RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 18:14:50 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q96QS3/2_msa/Q96QS3_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q96QS3/3_mltree/Q96QS3.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q96QS3/4_raxmlng_ancestral/Q96QS3 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622646890 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q96QS3/2_msa/Q96QS3_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 562 sites WARNING: Sequences tr_B4Q632_B4Q632_DROSI_7240 and tr_B4ICW1_B4ICW1_DROSE_7238 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_G1N5L3_G1N5L3_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_U3IX53_U3IX53_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A091JC58_A0A091JC58_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A091VLX1_A0A091VLX1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A087QYX0_A0A087QYX0_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A091V4Q3_A0A091V4Q3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A091FN52_A0A091FN52_9AVES_55661 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A0A0AQY1_A0A0A0AQY1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1C143_E1C143_CHICK_9031 and tr_A0A2I0MFC7_A0A2I0MFC7_COLLI_8932 are exactly identical! WARNING: Sequences sp_Q9PVY0_RX1_CHICK_9031 and tr_A0A226MXA1_A0A226MXA1_CALSU_9009 are exactly identical! WARNING: Sequences sp_O35690_PHX2B_MOUSE_10090 and tr_A0A2I3GB05_A0A2I3GB05_NOMLE_61853 are exactly identical! WARNING: Sequences sp_O35690_PHX2B_MOUSE_10090 and tr_G3QTR1_G3QTR1_GORGO_9595 are exactly identical! WARNING: Sequences sp_O35690_PHX2B_MOUSE_10090 and tr_H2QPD7_H2QPD7_PANTR_9598 are exactly identical! WARNING: Sequences sp_O35690_PHX2B_MOUSE_10090 and sp_Q99453_PHX2B_HUMAN_9606 are exactly identical! WARNING: Sequences sp_O35690_PHX2B_MOUSE_10090 and tr_A0A096NPT4_A0A096NPT4_PAPAN_9555 are exactly identical! WARNING: Sequences sp_O35690_PHX2B_MOUSE_10090 and tr_A0A0D9RWY9_A0A0D9RWY9_CHLSB_60711 are exactly identical! WARNING: Sequences sp_O35690_PHX2B_MOUSE_10090 and tr_A0A2K6BFM4_A0A2K6BFM4_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YCW7_M3YCW7_MUSPF_9669 and tr_A0A2Y9J627_A0A2Y9J627_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B4JDS0_B4JDS0_DROGR_7222 and tr_B4K0N7_B4K0N7_DROGR_7222 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_H2NI70_H2NI70_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_G7PIK8_G7PIK8_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_A0A096MXS2_A0A096MXS2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_A0A0D9QV21_A0A0D9QV21_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_A0A2K5NLC8_A0A2K5NLC8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_A0A2K6CG92_A0A2K6CG92_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_A0A2K5YFN0_A0A2K5YFN0_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QD58_G3QD58_GORGO_9595 and tr_H2Q6K1_H2Q6K1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QD58_G3QD58_GORGO_9595 and tr_F6VW17_F6VW17_HORSE_9796 are exactly identical! WARNING: Sequences tr_G3QD58_G3QD58_GORGO_9595 and tr_I3NDR7_I3NDR7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G3QD58_G3QD58_GORGO_9595 and sp_Q15699_ALX1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QD58_G3QD58_GORGO_9595 and tr_L5JU17_L5JU17_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G3QD58_G3QD58_GORGO_9595 and tr_A0A2R9B0M3_A0A2R9B0M3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QD58_G3QD58_GORGO_9595 and tr_A0A2U3WGP3_A0A2U3WGP3_ODORO_9708 are exactly identical! WARNING: Sequences tr_G3QD58_G3QD58_GORGO_9595 and tr_A0A2Y9EA01_A0A2Y9EA01_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G3QN78_G3QN78_GORGO_9595 and tr_H2PZM0_H2PZM0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QN78_G3QN78_GORGO_9595 and sp_O95076_ALX3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RFJ8_G3RFJ8_GORGO_9595 and tr_A0A2J8SBJ1_A0A2J8SBJ1_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RFJ8_G3RFJ8_GORGO_9595 and sp_A2T711_RAX2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RFJ8_G3RFJ8_GORGO_9595 and sp_Q96IS3_RAX2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RFJ8_G3RFJ8_GORGO_9595 and tr_F6YCG6_F6YCG6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RFJ8_G3RFJ8_GORGO_9595 and tr_G7PYK7_G7PYK7_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3RFJ8_G3RFJ8_GORGO_9595 and tr_A0A0A0MW01_A0A0A0MW01_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RFJ8_G3RFJ8_GORGO_9595 and tr_A0A0D9REX2_A0A0D9REX2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RFJ8_G3RFJ8_GORGO_9595 and tr_A0A2K5MZL8_A0A2K5MZL8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RFJ8_G3RFJ8_GORGO_9595 and tr_A0A2K6CA27_A0A2K6CA27_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RFJ8_G3RFJ8_GORGO_9595 and tr_A0A2K5YMP4_A0A2K5YMP4_MANLE_9568 are exactly identical! WARNING: Sequences tr_Q29N35_Q29N35_DROPS_46245 and tr_B4G8B0_B4G8B0_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A2J8JGN7_A0A2J8JGN7_PANTR_9598 and tr_A0A2R8ZN19_A0A2R8ZN19_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5NV96_W5NV96_SHEEP_9940 and tr_E1BDA0_E1BDA0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5Q1B1_W5Q1B1_SHEEP_9940 and tr_E1BKK2_E1BKK2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A3B5Q688_A0A3B5Q688_XIPMA_8083 and tr_A0A087YKF0_A0A087YKF0_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QAU1_A0A3B5QAU1_XIPMA_8083 and tr_A0A087XT14_A0A087XT14_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AMF9_A0A088AMF9_APIME_7460 and tr_A0A2A3EH84_A0A2A3EH84_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158P0P0_A0A158P0P0_ATTCE_12957 and tr_A0A195DX54_A0A195DX54_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158P0P0_A0A158P0P0_ATTCE_12957 and tr_A0A195B1D4_A0A195B1D4_9HYME_520822 are exactly identical! WARNING: Sequences tr_H0YRH0_H0YRH0_TAEGU_59729 and tr_A0A087QMY0_A0A087QMY0_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZAM2_H0ZAM2_TAEGU_59729 and tr_U3JXQ6_U3JXQ6_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZAM2_H0ZAM2_TAEGU_59729 and tr_A0A091EAP1_A0A091EAP1_CORBR_85066 are exactly identical! WARNING: Sequences tr_F6QW98_F6QW98_CALJA_9483 and tr_A0A1U7T3K9_A0A1U7T3K9_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A044R227_A0A044R227_ONCVO_6282 and tr_A0A182E8C1_A0A182E8C1_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A096NH47_A0A096NH47_PAPAN_9555 and tr_A0A0D9S6H7_A0A0D9S6H7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096NH47_A0A096NH47_PAPAN_9555 and tr_A0A2K5MU88_A0A2K5MU88_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9RDG3_A0A0D9RDG3_CHLSB_60711 and tr_A0A2K5KHQ6_A0A2K5KHQ6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9RDG3_A0A0D9RDG3_CHLSB_60711 and tr_A0A2K6DZR8_A0A2K6DZR8_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0D9RDG3_A0A0D9RDG3_CHLSB_60711 and tr_A0A2K5XDC0_A0A2K5XDC0_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151LYQ9_A0A151LYQ9_ALLMI_8496 and tr_A0A1U7S7Z5_A0A1U7S7Z5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091F0W8_A0A091F0W8_CORBR_85066 and tr_A0A091J9V4_A0A091J9V4_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091F0W8_A0A091F0W8_CORBR_85066 and tr_A0A091VLU5_A0A091VLU5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091F0W8_A0A091F0W8_CORBR_85066 and tr_A0A093HBJ4_A0A093HBJ4_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091F0W8_A0A091F0W8_CORBR_85066 and tr_A0A0A0AXJ7_A0A0A0AXJ7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JMB2_A0A091JMB2_EGRGA_188379 and tr_A0A091UNZ2_A0A091UNZ2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JMB2_A0A091JMB2_EGRGA_188379 and tr_A0A091WS91_A0A091WS91_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091JMB2_A0A091JMB2_EGRGA_188379 and tr_A0A0A0A9V9_A0A0A0A9V9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JMB2_A0A091JMB2_EGRGA_188379 and tr_A0A093GFW3_A0A093GFW3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0V1CS45_A0A0V1CS45_TRIBR_45882 and tr_A0A0V0VUR5_A0A0V0VUR5_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CS45_A0A0V1CS45_TRIBR_45882 and tr_A0A0V1P0P5_A0A0V1P0P5_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1M6L1_A0A0V1M6L1_9BILA_268474 and tr_A0A0V1H6X5_A0A0V1H6X5_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3RR13_A0A1S3RR13_SALSA_8030 and tr_A0A060YC01_A0A060YC01_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MZT8_A0A226MZT8_CALSU_9009 and tr_A0A226PBN4_A0A226PBN4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226N5U7_A0A226N5U7_CALSU_9009 and tr_A0A226P0L8_A0A226P0L8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0QQP4_A0A2D0QQP4_ICTPU_7998 and tr_A0A2D0QT11_A0A2D0QT11_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U3V8G0_A0A2U3V8G0_TURTR_9739 and tr_A0A2Y9LER6_A0A2Y9LER6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V8G0_A0A2U3V8G0_TURTR_9739 and tr_A0A2Y9F3H7_A0A2Y9F3H7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9P0U9_A0A2Y9P0U9_DELLE_9749 and tr_A0A2Y9SD92_A0A2Y9SD92_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9PRZ1_A0A2Y9PRZ1_DELLE_9749 and tr_A0A2Y9FLV2_A0A2Y9FLV2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9PRZ1_A0A2Y9PRZ1_DELLE_9749 and tr_A0A384A1U7_A0A384A1U7_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9FWZ2_A0A2Y9FWZ2_PHYCD_9755 and tr_A0A383ZUH6_A0A383ZUH6_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 88 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q96QS3/4_raxmlng_ancestral/Q96QS3.raxml.reduced.phy Alignment comprises 1 partitions and 562 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 562 Gaps: 61.44 % Invariant sites: 0.18 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q96QS3/4_raxmlng_ancestral/Q96QS3.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q96QS3/3_mltree/Q96QS3.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 141 / 11280 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -326620.321156 [00:00:00 -326620.321156] Initial branch length optimization [00:00:02 -143278.520402] Model parameter optimization (eps = 0.100000) [00:01:01] Tree #1, final logLikelihood: -143007.676907 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.065511,0.055057) (0.072084,0.142064) (0.247884,0.610606) (0.614520,1.358447) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q96QS3/4_raxmlng_ancestral/Q96QS3.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q96QS3/4_raxmlng_ancestral/Q96QS3.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q96QS3/4_raxmlng_ancestral/Q96QS3.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q96QS3/4_raxmlng_ancestral/Q96QS3.raxml.log Analysis started: 02-Jun-2021 18:14:50 / finished: 02-Jun-2021 18:15:56 Elapsed time: 65.921 seconds Consumed energy: 5.669 Wh