RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 20-Jul-2021 13:39:10 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96PX6/2_msa/Q96PX6_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96PX6/3_mltree/Q96PX6 --seed 2 --threads 2 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96PX6/2_msa/Q96PX6_trimmed_msa.fasta
[00:00:00] Loaded alignment with 376 taxa and 120 sites

WARNING: Sequences tr_B4NRV5_B4NRV5_DROSI_7240 and tr_Q9VQK1_Q9VQK1_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4NRV5_B4NRV5_DROSI_7240 and tr_B3MMY2_B3MMY2_DROAN_7217 are exactly identical!
WARNING: Sequences tr_B4NRV5_B4NRV5_DROSI_7240 and tr_A0A1W4V6X9_A0A1W4V6X9_DROFC_30025 are exactly identical!
WARNING: Sequences tr_A0A1D5PLN2_A0A1D5PLN2_CHICK_9031 and tr_A0A2I2ZME5_A0A2I2ZME5_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A1D5PLN2_A0A1D5PLN2_CHICK_9031 and tr_H0W6F0_H0W6F0_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_A0A1D5PLN2_A0A1D5PLN2_CHICK_9031 and tr_A0A2I3LY10_A0A2I3LY10_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5PLN2_A0A1D5PLN2_CHICK_9031 and tr_A0A060Y9T4_A0A060Y9T4_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1D5PLN2_A0A1D5PLN2_CHICK_9031 and tr_A0A226N9Q9_A0A226N9Q9_CALSU_9009 are exactly identical!
WARNING: Sequences tr_A0A1D5PLN2_A0A1D5PLN2_CHICK_9031 and tr_A0A226PHV3_A0A226PHV3_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A1D5PLN2_A0A1D5PLN2_CHICK_9031 and tr_A0A2K5XHK1_A0A2K5XHK1_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A1D5PLN2_A0A1D5PLN2_CHICK_9031 and tr_A0A2R9A2C9_A0A2R9A2C9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A1D5PPW0_A0A1D5PPW0_CHICK_9031 and tr_A0A226MUT4_A0A226MUT4_CALSU_9009 are exactly identical!
WARNING: Sequences tr_A0A1D5PPW0_A0A1D5PPW0_CHICK_9031 and tr_A0A226P8T5_A0A226P8T5_COLVI_9014 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and tr_H2NM83_H2NM83_PONAB_9601 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and tr_K7AAL2_K7AAL2_PANTR_9598 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and tr_I3MXW9_I3MXW9_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and tr_H0XTS2_H0XTS2_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and sp_A6NKD9_CC85C_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and tr_A0A2R8MSY0_A0A2R8MSY0_CALJA_9483 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and tr_A0A287BCU3_A0A287BCU3_PIG_9823 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and tr_F1MZJ7_F1MZJ7_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and tr_A0A0D9RDI2_A0A0D9RDI2_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and tr_A0A2K5MZC4_A0A2K5MZC4_CERAT_9531 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and tr_A0A2K6DTG5_A0A2K6DTG5_MACNE_9545 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and tr_A0A2Y9NR59_A0A2Y9NR59_DELLE_9749 are exactly identical!
WARNING: Sequences sp_E9Q6B2_CC85C_MOUSE_10090 and tr_A0A2Y9TDJ6_A0A2Y9TDJ6_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_M3Z8D9_M3Z8D9_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A2I3HE63_A0A2I3HE63_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_G3I2G2_G3I2G2_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_H2NCT3_H2NCT3_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_E2REF8_E2REF8_CANLF_9615 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_H2Q448_H2Q448_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_H0XLU9_H0XLU9_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and sp_Q15834_CC85B_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_F7F848_F7F848_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A2R8P8S4_A0A2R8P8S4_CALJA_9483 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_F1RU25_F1RU25_PIG_9823 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_D2H4N9_D2H4N9_AILME_9646 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_F1N5D5_F1N5D5_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_L5KQ66_L5KQ66_PTEAL_9402 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A337SJP2_A0A337SJP2_FELCA_9685 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A096N9K3_A0A096N9K3_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A0D9SCU1_A0A0D9SCU1_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A1U7Q2U9_A0A1U7Q2U9_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A2K6AMZ1_A0A2K6AMZ1_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A2U3UZL7_A0A2U3UZL7_TURTR_9739 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A2U3VGR8_A0A2U3VGR8_ODORO_9708 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A2U3Y925_A0A2U3Y925_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A2Y9DYS3_A0A2Y9DYS3_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A2Y9JSZ7_A0A2Y9JSZ7_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A2Y9PUX1_A0A2Y9PUX1_DELLE_9749 are exactly identical!
WARNING: Sequences sp_Q6PDY0_CC85B_MOUSE_10090 and tr_A0A2Y9FRQ8_A0A2Y9FRQ8_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_G1RE16_G1RE16_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_F6YUD3_F6YUD3_HORSE_9796 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_W5NV71_W5NV71_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_D3ZMD4_D3ZMD4_RAT_10116 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A287CX91_A0A287CX91_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_H0XW31_H0XW31_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_H0UX87_H0UX87_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_F7BVP9_F7BVP9_MACMU_9544 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A287ALS1_A0A287ALS1_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_G1LAF7_G1LAF7_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A2I2UT97_A0A2I2UT97_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A0D9RPG0_A0A0D9RPG0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A1S3FA04_A0A1S3FA04_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A1U7UTV8_A0A1U7UTV8_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A2K5NLC6_A0A2K5NLC6_CERAT_9531 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A2K6DN89_A0A2K6DN89_MACNE_9545 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A2K5XKK1_A0A2K5XKK1_MANLE_9568 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A2U3W6B8_A0A2U3W6B8_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A2U3Z5R9_A0A2U3Z5R9_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A2Y9JH02_A0A2Y9JH02_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A2Y9Q195_A0A2Y9Q195_DELLE_9749 are exactly identical!
WARNING: Sequences tr_M3XTB6_M3XTB6_MUSPF_9669 and tr_A0A384ARP5_A0A384ARP5_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A3B3IKA5_A0A3B3IKA5_ORYLA_8090 and tr_I3KRJ9_I3KRJ9_ORENI_8128 are exactly identical!
WARNING: Sequences tr_A0A3B3IKA5_A0A3B3IKA5_ORYLA_8090 and tr_A0A2U9BQ45_A0A2U9BQ45_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_H2L9J5_H2L9J5_ORYLA_8090 and tr_H2U0P9_H2U0P9_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_H2L9J5_H2L9J5_ORYLA_8090 and tr_G3PY47_G3PY47_GASAC_69293 are exactly identical!
WARNING: Sequences tr_H2L9J5_H2L9J5_ORYLA_8090 and tr_A0A2I4AZL3_A0A2I4AZL3_9TELE_52670 are exactly identical!
WARNING: Sequences tr_B4JR52_B4JR52_DROGR_7222 and tr_B4K1H0_B4K1H0_DROGR_7222 are exactly identical!
WARNING: Sequences tr_G3R6Z7_G3R6Z7_GORGO_9595 and tr_H2P656_H2P656_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3R6Z7_G3R6Z7_GORGO_9595 and tr_H2QHX8_H2QHX8_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3R6Z7_G3R6Z7_GORGO_9595 and sp_Q96PX6_CC85A_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3R6Z7_G3R6Z7_GORGO_9595 and tr_A0A2R9AKL4_A0A2R9AKL4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1NKP0_G1NKP0_MELGA_9103 and tr_U3ICS1_U3ICS1_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_G1NKP0_G1NKP0_MELGA_9103 and tr_A0A0Q3P976_A0A0Q3P976_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_G1NKP0_G1NKP0_MELGA_9103 and tr_A0A091V8P9_A0A091V8P9_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_G1NKP0_G1NKP0_MELGA_9103 and tr_A0A093HIN3_A0A093HIN3_STRCA_441894 are exactly identical!
WARNING: Sequences tr_G1NKP0_G1NKP0_MELGA_9103 and tr_A0A091G0P1_A0A091G0P1_9AVES_55661 are exactly identical!
WARNING: Sequences tr_G1NKP0_G1NKP0_MELGA_9103 and tr_A0A0A0AU24_A0A0A0AU24_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_G1NKP0_G1NKP0_MELGA_9103 and tr_A0A093FYW1_A0A093FYW1_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_G1NKP0_G1NKP0_MELGA_9103 and tr_A0A091HIQ0_A0A091HIQ0_CALAN_9244 are exactly identical!
WARNING: Sequences tr_G1NKP0_G1NKP0_MELGA_9103 and tr_A0A1V4KAP9_A0A1V4KAP9_PATFA_372326 are exactly identical!
WARNING: Sequences tr_G1NKP0_G1NKP0_MELGA_9103 and tr_A0A218V2M8_A0A218V2M8_9PASE_299123 are exactly identical!
WARNING: Sequences tr_G1SJU0_G1SJU0_RABIT_9986 and tr_A0A2U4BY57_A0A2U4BY57_TURTR_9739 are exactly identical!
WARNING: Sequences tr_B5DIP7_B5DIP7_DROPS_46245 and tr_B4G6Z8_B4G6Z8_DROPE_7234 are exactly identical!
WARNING: Sequences tr_F6QCP6_F6QCP6_MONDO_13616 and tr_G3W6L2_G3W6L2_SARHA_9305 are exactly identical!
WARNING: Sequences tr_A0A3B5QGR3_A0A3B5QGR3_XIPMA_8083 and tr_A0A087XNC8_A0A087XNC8_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M4AYL5_M4AYL5_XIPMA_8083 and tr_I3KZX6_I3KZX6_ORENI_8128 are exactly identical!
WARNING: Sequences tr_M4AYL5_M4AYL5_XIPMA_8083 and tr_A0A087YS69_A0A087YS69_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A158NYV0_A0A158NYV0_ATTCE_12957 and tr_A0A151JS27_A0A151JS27_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NYV0_A0A158NYV0_ATTCE_12957 and tr_A0A195BUI1_A0A195BUI1_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NYV0_A0A158NYV0_ATTCE_12957 and tr_A0A195FTA9_A0A195FTA9_9HYME_34720 are exactly identical!
WARNING: Sequences tr_I3M200_I3M200_ICTTR_43179 and tr_A0A1S3FIK1_A0A1S3FIK1_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_H2UDM1_H2UDM1_TAKRU_31033 and tr_H3D3F1_H3D3F1_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H3CCU8_H3CCU8_TETNG_99883 and tr_H3D7A5_H3D7A5_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H0Z904_H0Z904_TAEGU_59729 and tr_A0A218URY2_A0A218URY2_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H0ZR51_H0ZR51_TAEGU_59729 and tr_U3JIU9_U3JIU9_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0ZR51_H0ZR51_TAEGU_59729 and tr_A0A096LXC4_A0A096LXC4_POEFO_48698 are exactly identical!
WARNING: Sequences tr_B4MW14_B4MW14_DROWI_7260 and tr_B4LQH7_B4LQH7_DROVI_7244 are exactly identical!
WARNING: Sequences tr_B4MW14_B4MW14_DROWI_7260 and tr_A0A0Q9X561_A0A0Q9X561_DROMO_7230 are exactly identical!
WARNING: Sequences tr_U3K9H9_U3K9H9_FICAL_59894 and tr_A0A091FW40_A0A091FW40_CORBR_85066 are exactly identical!
WARNING: Sequences tr_U3I0S4_U3I0S4_ANAPL_8839 and tr_A0A093SGA8_A0A093SGA8_9PASS_328815 are exactly identical!
WARNING: Sequences tr_U3I0S4_U3I0S4_ANAPL_8839 and tr_A0A091UPP6_A0A091UPP6_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_U3I0S4_U3I0S4_ANAPL_8839 and tr_A0A091FTG5_A0A091FTG5_9AVES_55661 are exactly identical!
WARNING: Sequences tr_U3I0S4_U3I0S4_ANAPL_8839 and tr_A0A2I0M997_A0A2I0M997_COLLI_8932 are exactly identical!
WARNING: Sequences tr_U3I0S4_U3I0S4_ANAPL_8839 and tr_A0A093FV69_A0A093FV69_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_U3I0S4_U3I0S4_ANAPL_8839 and tr_A0A1V4IG32_A0A1V4IG32_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A3B1INJ8_A0A3B1INJ8_ASTMX_7994 and tr_A0A2D0QJC4_A0A2D0QJC4_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A093HDT7_A0A093HDT7_STRCA_441894 and tr_A0A0A0AJV1_A0A0A0AJV1_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A1S3L5I3_A0A1S3L5I3_SALSA_8030 and tr_A0A1S3Q1H3_A0A1S3Q1H3_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A061A5G6_A0A061A5G6_ONCMY_8022 and tr_A0A061A6S2_A0A061A6S2_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A2U3VKY6_A0A2U3VKY6_ODORO_9708 and tr_A0A2Y9JN55_A0A2Y9JN55_ENHLU_391180 are exactly identical!
WARNING: Duplicate sequences found: 123

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96PX6/3_mltree/Q96PX6.raxml.reduced.phy

Alignment comprises 1 partitions and 120 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 120 / 120
Gaps: 9.20 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96PX6/3_mltree/Q96PX6.raxml.rba

Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 376 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 120 / 9600
[00:00:00] Data distribution: max. searches per worker: 10

Starting ML tree search with 20 distinct starting trees

[00:00:00 -45820.755988] Initial branch length optimization
[00:00:00 -37086.079914] Model parameter optimization (eps = 10.000000)
[00:00:13 -36740.634370] AUTODETECT spr round 1 (radius: 5)
[00:00:31 -24460.384592] AUTODETECT spr round 2 (radius: 10)
[00:00:54 -18117.781571] AUTODETECT spr round 3 (radius: 15)
[00:01:22 -14715.294825] AUTODETECT spr round 4 (radius: 20)
[00:01:52 -14086.746276] AUTODETECT spr round 5 (radius: 25)
[00:02:24 -13859.265267] SPR radius for FAST iterations: 25 (autodetect)
[00:02:24 -13859.265267] Model parameter optimization (eps = 3.000000)
[00:02:33 -13824.678765] FAST spr round 1 (radius: 25)
[00:03:00 -11930.084227] FAST spr round 2 (radius: 25)
[00:03:22 -11815.126016] FAST spr round 3 (radius: 25)
[00:03:43 -11790.694733] FAST spr round 4 (radius: 25)
[00:04:00 -11788.284406] FAST spr round 5 (radius: 25)
[00:04:16 -11788.281307] Model parameter optimization (eps = 1.000000)
[00:04:25 -11777.932559] SLOW spr round 1 (radius: 5)
[00:04:46 -11772.480658] SLOW spr round 2 (radius: 5)
[00:05:08 -11771.825702] SLOW spr round 3 (radius: 5)
[00:05:30 -11771.824880] SLOW spr round 4 (radius: 10)
[00:05:53 -11768.643809] SLOW spr round 5 (radius: 5)
[00:06:21 -11768.641809] SLOW spr round 6 (radius: 10)
[00:06:48 -11768.641427] SLOW spr round 7 (radius: 15)
[00:07:18 -11768.613975] SLOW spr round 8 (radius: 20)
[00:08:04 -11767.469874] SLOW spr round 9 (radius: 5)
[00:08:36 -11767.455474] SLOW spr round 10 (radius: 10)
[00:09:04 -11767.455047] SLOW spr round 11 (radius: 15)
[00:09:34 -11767.454952] SLOW spr round 12 (radius: 20)
[00:10:19 -11767.454906] SLOW spr round 13 (radius: 25)
[00:11:11 -11767.454880] Model parameter optimization (eps = 0.100000)

[00:11:17] [worker #0] ML tree search #1, logLikelihood: -11766.542988

[00:11:17 -45409.349444] Initial branch length optimization
[00:11:18 -36571.883999] Model parameter optimization (eps = 10.000000)
[00:11:31 -36369.543010] AUTODETECT spr round 1 (radius: 5)
[00:11:49 -23039.195001] AUTODETECT spr round 2 (radius: 10)
[00:12:12 -18041.614725] AUTODETECT spr round 3 (radius: 15)
[00:12:40 -15963.588021] AUTODETECT spr round 4 (radius: 20)
[00:13:11 -15884.922562] AUTODETECT spr round 5 (radius: 25)
[00:13:52 -14164.254214] SPR radius for FAST iterations: 25 (autodetect)
[00:13:52 -14164.254214] Model parameter optimization (eps = 3.000000)
[00:14:04 -14100.358739] FAST spr round 1 (radius: 25)
[00:14:28 -12561.526870] FAST spr round 2 (radius: 25)
[00:14:48 -11830.896800] FAST spr round 3 (radius: 25)
[00:15:08 -11797.389093] FAST spr round 4 (radius: 25)
[00:15:26 -11795.413048] FAST spr round 5 (radius: 25)
[00:15:43 -11795.412397] Model parameter optimization (eps = 1.000000)
[00:15:53 -11781.693997] SLOW spr round 1 (radius: 5)
[00:16:14 -11779.125718] SLOW spr round 2 (radius: 5)
[00:16:36 -11779.082750] SLOW spr round 3 (radius: 10)
[00:17:00 -11776.525679] SLOW spr round 4 (radius: 5)
[00:17:30 -11774.701011] SLOW spr round 5 (radius: 5)
[00:17:55 -11773.297313] SLOW spr round 6 (radius: 5)
[00:18:17 -11773.296272] SLOW spr round 7 (radius: 10)
[00:18:42 -11766.447256] SLOW spr round 8 (radius: 5)
[00:19:11 -11763.247651] SLOW spr round 9 (radius: 5)
[00:19:29] [worker #1] ML tree search #2, logLikelihood: -11753.336643
[00:19:37 -11763.235027] SLOW spr round 10 (radius: 10)
[00:20:01 -11763.235020] SLOW spr round 11 (radius: 15)
[00:20:37 -11762.458391] SLOW spr round 12 (radius: 5)
[00:21:08 -11762.456740] SLOW spr round 13 (radius: 10)
[00:21:37 -11762.319556] SLOW spr round 14 (radius: 5)
[00:22:04 -11762.319534] SLOW spr round 15 (radius: 10)
[00:22:30 -11762.319530] SLOW spr round 16 (radius: 15)
[00:23:02 -11762.319528] SLOW spr round 17 (radius: 20)
[00:23:53 -11762.160405] SLOW spr round 18 (radius: 5)
[00:24:26 -11762.136559] SLOW spr round 19 (radius: 10)
[00:24:54 -11761.869702] SLOW spr round 20 (radius: 5)
[00:25:21 -11761.863567] SLOW spr round 21 (radius: 10)
[00:25:47 -11761.863488] SLOW spr round 22 (radius: 15)
[00:26:19 -11761.863488] SLOW spr round 23 (radius: 20)
[00:27:10 -11761.863488] SLOW spr round 24 (radius: 25)
[00:28:07 -11761.863488] Model parameter optimization (eps = 0.100000)

[00:28:18] [worker #0] ML tree search #3, logLikelihood: -11760.666397

[00:28:18 -45726.395384] Initial branch length optimization
[00:28:19 -36705.692663] Model parameter optimization (eps = 10.000000)
[00:28:30 -36471.398066] AUTODETECT spr round 1 (radius: 5)
[00:28:48 -23392.824467] AUTODETECT spr round 2 (radius: 10)
[00:29:10 -18737.015994] AUTODETECT spr round 3 (radius: 15)
[00:29:38 -15116.413955] AUTODETECT spr round 4 (radius: 20)
[00:30:07 -14605.119197] AUTODETECT spr round 5 (radius: 25)
[00:30:27] [worker #1] ML tree search #4, logLikelihood: -11759.446921
[00:30:39 -14453.200767] SPR radius for FAST iterations: 25 (autodetect)
[00:30:39 -14453.200767] Model parameter optimization (eps = 3.000000)
[00:30:55 -14414.941316] FAST spr round 1 (radius: 25)
[00:31:22 -12171.930744] FAST spr round 2 (radius: 25)
[00:31:47 -11816.228645] FAST spr round 3 (radius: 25)
[00:32:08 -11802.852786] FAST spr round 4 (radius: 25)
[00:32:27 -11795.388634] FAST spr round 5 (radius: 25)
[00:32:45 -11792.529854] FAST spr round 6 (radius: 25)
[00:33:02 -11792.528518] Model parameter optimization (eps = 1.000000)
[00:33:11 -11781.632818] SLOW spr round 1 (radius: 5)
[00:33:35 -11777.177957] SLOW spr round 2 (radius: 5)
[00:33:56 -11777.176706] SLOW spr round 3 (radius: 10)
[00:34:20 -11775.302390] SLOW spr round 4 (radius: 5)
[00:34:49 -11774.123991] SLOW spr round 5 (radius: 5)
[00:35:15 -11773.140466] SLOW spr round 6 (radius: 5)
[00:35:39 -11772.422114] SLOW spr round 7 (radius: 5)
[00:36:02 -11770.513457] SLOW spr round 8 (radius: 5)
[00:36:23 -11770.492246] SLOW spr round 9 (radius: 10)
[00:36:47 -11770.490799] SLOW spr round 10 (radius: 15)
[00:37:20 -11770.429302] SLOW spr round 11 (radius: 20)
[00:38:06 -11769.161973] SLOW spr round 12 (radius: 5)
[00:38:38 -11769.161579] SLOW spr round 13 (radius: 10)
[00:39:06 -11769.104515] SLOW spr round 14 (radius: 15)
[00:39:37 -11769.104310] SLOW spr round 15 (radius: 20)
[00:40:23 -11769.104289] SLOW spr round 16 (radius: 25)
[00:41:19 -11764.328942] SLOW spr round 17 (radius: 5)
[00:41:52 -11763.235941] SLOW spr round 18 (radius: 5)
[00:42:19 -11763.235846] SLOW spr round 19 (radius: 10)
[00:42:44 -11763.098912] SLOW spr round 20 (radius: 5)
[00:43:12 -11763.098633] SLOW spr round 21 (radius: 10)
[00:43:37 -11763.068610] SLOW spr round 22 (radius: 15)
[00:44:09 -11762.713544] SLOW spr round 23 (radius: 5)
[00:44:40 -11762.671851] SLOW spr round 24 (radius: 10)
[00:44:59] [worker #1] ML tree search #6, logLikelihood: -11760.478194
[00:45:07 -11762.671647] SLOW spr round 25 (radius: 15)
[00:45:37 -11762.508538] SLOW spr round 26 (radius: 5)
[00:46:08 -11762.508234] SLOW spr round 27 (radius: 10)
[00:46:35 -11762.508222] SLOW spr round 28 (radius: 15)
[00:47:07 -11762.508221] SLOW spr round 29 (radius: 20)
[00:47:53 -11762.508221] SLOW spr round 30 (radius: 25)
[00:48:46 -11762.508221] Model parameter optimization (eps = 0.100000)

[00:48:53] [worker #0] ML tree search #5, logLikelihood: -11757.124927

[00:48:53 -46825.036588] Initial branch length optimization
[00:48:54 -37605.120610] Model parameter optimization (eps = 10.000000)
[00:49:05 -37390.773910] AUTODETECT spr round 1 (radius: 5)
[00:49:23 -23689.718803] AUTODETECT spr round 2 (radius: 10)
[00:49:47 -16789.447922] AUTODETECT spr round 3 (radius: 15)
[00:50:13 -15041.284608] AUTODETECT spr round 4 (radius: 20)
[00:50:44 -14104.106254] AUTODETECT spr round 5 (radius: 25)
[00:51:21 -13514.998741] SPR radius for FAST iterations: 25 (autodetect)
[00:51:21 -13514.998741] Model parameter optimization (eps = 3.000000)
[00:51:31 -13471.891220] FAST spr round 1 (radius: 25)
[00:51:58 -12082.623310] FAST spr round 2 (radius: 25)
[00:52:22 -11909.501143] FAST spr round 3 (radius: 25)
[00:52:42 -11818.467465] FAST spr round 4 (radius: 25)
[00:53:00 -11793.821926] FAST spr round 5 (radius: 25)
[00:53:17 -11793.332642] FAST spr round 6 (radius: 25)
[00:53:34 -11792.322809] FAST spr round 7 (radius: 25)
[00:53:50 -11792.322804] Model parameter optimization (eps = 1.000000)
[00:54:01 -11785.255985] SLOW spr round 1 (radius: 5)
[00:54:22 -11783.541663] SLOW spr round 2 (radius: 5)
[00:54:43 -11780.661516] SLOW spr round 3 (radius: 5)
[00:55:03 -11780.661482] SLOW spr round 4 (radius: 10)
[00:55:26 -11778.525453] SLOW spr round 5 (radius: 5)
[00:55:55 -11772.204730] SLOW spr round 6 (radius: 5)
[00:56:19 -11772.204097] SLOW spr round 7 (radius: 10)
[00:56:25] [worker #1] ML tree search #8, logLikelihood: -11766.932267
[00:56:43 -11769.841089] SLOW spr round 8 (radius: 5)
[00:57:11 -11768.737913] SLOW spr round 9 (radius: 5)
[00:57:36 -11768.734817] SLOW spr round 10 (radius: 10)
[00:57:59 -11768.734563] SLOW spr round 11 (radius: 15)
[00:58:32 -11767.273770] SLOW spr round 12 (radius: 5)
[00:59:02 -11767.272329] SLOW spr round 13 (radius: 10)
[00:59:29 -11767.245061] SLOW spr round 14 (radius: 15)
[01:00:01 -11767.245014] SLOW spr round 15 (radius: 20)
[01:00:45 -11767.245006] SLOW spr round 16 (radius: 25)
[01:01:36 -11767.245004] Model parameter optimization (eps = 0.100000)

[01:01:43] [worker #0] ML tree search #7, logLikelihood: -11765.951961

[01:01:43 -45780.801803] Initial branch length optimization
[01:01:44 -36872.758229] Model parameter optimization (eps = 10.000000)
[01:01:55 -36652.290825] AUTODETECT spr round 1 (radius: 5)
[01:02:14 -23983.565052] AUTODETECT spr round 2 (radius: 10)
[01:02:36 -18763.782373] AUTODETECT spr round 3 (radius: 15)
[01:03:03 -14917.606127] AUTODETECT spr round 4 (radius: 20)
[01:03:38 -13446.175913] AUTODETECT spr round 5 (radius: 25)
[01:04:10 -13222.589872] SPR radius for FAST iterations: 25 (autodetect)
[01:04:10 -13222.589872] Model parameter optimization (eps = 3.000000)
[01:04:22 -13176.958087] FAST spr round 1 (radius: 25)
[01:04:48 -11901.324955] FAST spr round 2 (radius: 25)
[01:05:12 -11817.100637] FAST spr round 3 (radius: 25)
[01:05:33 -11808.698611] FAST spr round 4 (radius: 25)
[01:05:52 -11804.164631] FAST spr round 5 (radius: 25)
[01:06:12 -11798.953922] FAST spr round 6 (radius: 25)
[01:06:29 -11798.896822] Model parameter optimization (eps = 1.000000)
[01:06:41 -11781.295174] SLOW spr round 1 (radius: 5)
[01:07:04 -11776.357022] SLOW spr round 2 (radius: 5)
[01:07:12] [worker #1] ML tree search #10, logLikelihood: -11773.164290
[01:07:26 -11775.669790] SLOW spr round 3 (radius: 5)
[01:07:47 -11775.651003] SLOW spr round 4 (radius: 10)
[01:08:12 -11775.432095] SLOW spr round 5 (radius: 5)
[01:08:42 -11775.430265] SLOW spr round 6 (radius: 10)
[01:09:09 -11775.429885] SLOW spr round 7 (radius: 15)
[01:09:39 -11774.823471] SLOW spr round 8 (radius: 5)
[01:10:10 -11774.822901] SLOW spr round 9 (radius: 10)
[01:10:38 -11774.822862] SLOW spr round 10 (radius: 15)
[01:11:08 -11769.477390] SLOW spr round 11 (radius: 5)
[01:11:40 -11769.475127] SLOW spr round 12 (radius: 10)
[01:12:07 -11769.475082] SLOW spr round 13 (radius: 15)
[01:12:37 -11769.475073] SLOW spr round 14 (radius: 20)
[01:13:21 -11769.475034] SLOW spr round 15 (radius: 25)
[01:14:13 -11769.019431] SLOW spr round 16 (radius: 5)
[01:14:46 -11769.016347] SLOW spr round 17 (radius: 10)
[01:15:15 -11769.016305] SLOW spr round 18 (radius: 15)
[01:15:45 -11769.016295] SLOW spr round 19 (radius: 20)
[01:16:30 -11769.016290] SLOW spr round 20 (radius: 25)
[01:17:22 -11768.684887] SLOW spr round 21 (radius: 5)
[01:17:54 -11768.684558] SLOW spr round 22 (radius: 10)
[01:18:22 -11768.684453] SLOW spr round 23 (radius: 15)
[01:18:53 -11768.684401] SLOW spr round 24 (radius: 20)
[01:19:39 -11768.684306] SLOW spr round 25 (radius: 25)
[01:20:19] [worker #1] ML tree search #12, logLikelihood: -11763.485611
[01:20:30 -11768.684294] Model parameter optimization (eps = 0.100000)

[01:20:36] [worker #0] ML tree search #9, logLikelihood: -11766.629892

[01:20:36 -46302.998677] Initial branch length optimization
[01:20:36 -37241.922793] Model parameter optimization (eps = 10.000000)
[01:20:51 -36881.988910] AUTODETECT spr round 1 (radius: 5)
[01:21:09 -24681.664287] AUTODETECT spr round 2 (radius: 10)
[01:21:32 -18776.175222] AUTODETECT spr round 3 (radius: 15)
[01:22:01 -15693.929865] AUTODETECT spr round 4 (radius: 20)
[01:22:35 -14041.677074] AUTODETECT spr round 5 (radius: 25)
[01:23:14 -13827.517565] SPR radius for FAST iterations: 25 (autodetect)
[01:23:14 -13827.517565] Model parameter optimization (eps = 3.000000)
[01:23:22 -13798.190242] FAST spr round 1 (radius: 25)
[01:23:50 -11951.473722] FAST spr round 2 (radius: 25)
[01:24:11 -11808.824295] FAST spr round 3 (radius: 25)
[01:24:31 -11793.329455] FAST spr round 4 (radius: 25)
[01:24:49 -11791.476814] FAST spr round 5 (radius: 25)
[01:25:05 -11791.451741] Model parameter optimization (eps = 1.000000)
[01:25:14 -11780.654676] SLOW spr round 1 (radius: 5)
[01:25:36 -11774.766206] SLOW spr round 2 (radius: 5)
[01:25:57 -11772.875176] SLOW spr round 3 (radius: 5)
[01:26:19 -11772.771664] SLOW spr round 4 (radius: 5)
[01:26:41 -11772.770452] SLOW spr round 5 (radius: 10)
[01:27:04 -11770.556829] SLOW spr round 6 (radius: 5)
[01:27:33 -11770.555601] SLOW spr round 7 (radius: 10)
[01:27:58 -11770.554688] SLOW spr round 8 (radius: 15)
[01:28:30 -11770.554046] SLOW spr round 9 (radius: 20)
[01:29:13 -11768.616809] SLOW spr round 10 (radius: 5)
[01:29:27] [worker #1] ML tree search #14, logLikelihood: -11770.771304
[01:29:45 -11767.278755] SLOW spr round 11 (radius: 5)
[01:30:12 -11767.278159] SLOW spr round 12 (radius: 10)
[01:30:37 -11767.277848] SLOW spr round 13 (radius: 15)
[01:31:09 -11767.277629] SLOW spr round 14 (radius: 20)
[01:31:52 -11766.982259] SLOW spr round 15 (radius: 5)
[01:32:25 -11765.953790] SLOW spr round 16 (radius: 5)
[01:32:53 -11765.144986] SLOW spr round 17 (radius: 5)
[01:33:17 -11765.144689] SLOW spr round 18 (radius: 10)
[01:33:41 -11765.049944] SLOW spr round 19 (radius: 15)
[01:34:14 -11764.965859] SLOW spr round 20 (radius: 20)
[01:35:03 -11764.963878] SLOW spr round 21 (radius: 25)
[01:36:03 -11764.962876] Model parameter optimization (eps = 0.100000)

[01:36:09] [worker #0] ML tree search #11, logLikelihood: -11763.155109

[01:36:09 -46575.869325] Initial branch length optimization
[01:36:09 -37227.407538] Model parameter optimization (eps = 10.000000)
[01:36:24 -37003.517045] AUTODETECT spr round 1 (radius: 5)
[01:36:43 -24045.969975] AUTODETECT spr round 2 (radius: 10)
[01:37:05 -18841.170347] AUTODETECT spr round 3 (radius: 15)
[01:37:32 -16611.061292] AUTODETECT spr round 4 (radius: 20)
[01:38:04 -15353.990883] AUTODETECT spr round 5 (radius: 25)
[01:38:32 -14184.213832] SPR radius for FAST iterations: 25 (autodetect)
[01:38:32 -14184.213832] Model parameter optimization (eps = 3.000000)
[01:38:48 -14136.229383] FAST spr round 1 (radius: 25)
[01:39:11 -11895.396805] FAST spr round 2 (radius: 25)
[01:39:32 -11791.016709] FAST spr round 3 (radius: 25)
[01:39:52 -11788.718692] FAST spr round 4 (radius: 25)
[01:40:09 -11786.815626] FAST spr round 5 (radius: 25)
[01:40:27 -11786.814844] Model parameter optimization (eps = 1.000000)
[01:40:37 -11772.557408] SLOW spr round 1 (radius: 5)
[01:40:59 -11765.440497] SLOW spr round 2 (radius: 5)
[01:41:22 -11765.439008] SLOW spr round 3 (radius: 10)
[01:41:46 -11764.583151] SLOW spr round 4 (radius: 5)
[01:42:16 -11764.176637] SLOW spr round 5 (radius: 5)
[01:42:42 -11764.175905] SLOW spr round 6 (radius: 10)
[01:43:08 -11763.346197] SLOW spr round 7 (radius: 5)
[01:43:36 -11763.345970] SLOW spr round 8 (radius: 10)
[01:44:02 -11763.345960] SLOW spr round 9 (radius: 15)
[01:44:35 -11763.345942] SLOW spr round 10 (radius: 20)
[01:45:17 -11763.345942] SLOW spr round 11 (radius: 25)
[01:46:07 -11763.345942] Model parameter optimization (eps = 0.100000)

[01:46:13] [worker #0] ML tree search #13, logLikelihood: -11762.535939

[01:46:13 -46528.429775] Initial branch length optimization
[01:46:14 -37206.629464] Model parameter optimization (eps = 10.000000)
[01:46:27 -37028.590764] AUTODETECT spr round 1 (radius: 5)
[01:46:45 -23483.346889] AUTODETECT spr round 2 (radius: 10)
[01:46:56] [worker #1] ML tree search #16, logLikelihood: -11779.529807
[01:47:07 -18038.465363] AUTODETECT spr round 3 (radius: 15)
[01:47:33 -15546.888824] AUTODETECT spr round 4 (radius: 20)
[01:48:10 -14062.805540] AUTODETECT spr round 5 (radius: 25)
[01:48:52 -13718.195904] SPR radius for FAST iterations: 25 (autodetect)
[01:48:52 -13718.195904] Model parameter optimization (eps = 3.000000)
[01:49:03 -13668.781919] FAST spr round 1 (radius: 25)
[01:49:28 -11921.397218] FAST spr round 2 (radius: 25)
[01:49:49 -11791.143739] FAST spr round 3 (radius: 25)
[01:50:08 -11788.984798] FAST spr round 4 (radius: 25)
[01:50:26 -11788.984194] Model parameter optimization (eps = 1.000000)
[01:50:35 -11775.114303] SLOW spr round 1 (radius: 5)
[01:50:57 -11772.399834] SLOW spr round 2 (radius: 5)
[01:51:18 -11772.399276] SLOW spr round 3 (radius: 10)
[01:51:43 -11769.408495] SLOW spr round 4 (radius: 5)
[01:52:12 -11768.816032] SLOW spr round 5 (radius: 5)
[01:52:37 -11768.815395] SLOW spr round 6 (radius: 10)
[01:53:01 -11768.815349] SLOW spr round 7 (radius: 15)
[01:53:32 -11768.409309] SLOW spr round 8 (radius: 5)
[01:54:04 -11767.995643] SLOW spr round 9 (radius: 5)
[01:54:29 -11767.995582] SLOW spr round 10 (radius: 10)
[01:54:55 -11767.995568] SLOW spr round 11 (radius: 15)
[01:55:26 -11763.215380] SLOW spr round 12 (radius: 5)
[01:55:56 -11763.213866] SLOW spr round 13 (radius: 10)
[01:56:24 -11763.213771] SLOW spr round 14 (radius: 15)
[01:56:54 -11763.213748] SLOW spr round 15 (radius: 20)
[01:57:37 -11762.691758] SLOW spr round 16 (radius: 5)
[01:58:09 -11762.691497] SLOW spr round 17 (radius: 10)
[01:58:37 -11762.678062] SLOW spr round 18 (radius: 15)
[01:59:08 -11762.678055] SLOW spr round 19 (radius: 20)
[01:59:51 -11762.678052] SLOW spr round 20 (radius: 25)
[02:00:45 -11759.804135] SLOW spr round 21 (radius: 5)
[02:01:17 -11759.802534] SLOW spr round 22 (radius: 10)
[02:01:45 -11759.802315] SLOW spr round 23 (radius: 15)
[02:02:16 -11759.802275] SLOW spr round 24 (radius: 20)
[02:03:00 -11759.802267] SLOW spr round 25 (radius: 25)
[02:03:52] [worker #1] ML tree search #18, logLikelihood: -11764.044315
[02:03:54 -11759.802266] Model parameter optimization (eps = 0.100000)

[02:04:03] [worker #0] ML tree search #15, logLikelihood: -11759.104084

[02:04:03 -46029.144408] Initial branch length optimization
[02:04:04 -36790.624551] Model parameter optimization (eps = 10.000000)
[02:04:20 -36543.997112] AUTODETECT spr round 1 (radius: 5)
[02:04:38 -24156.267843] AUTODETECT spr round 2 (radius: 10)
[02:05:01 -18549.175944] AUTODETECT spr round 3 (radius: 15)
[02:05:28 -15163.734138] AUTODETECT spr round 4 (radius: 20)
[02:06:00 -13849.625357] AUTODETECT spr round 5 (radius: 25)
[02:06:40 -13350.312834] SPR radius for FAST iterations: 25 (autodetect)
[02:06:40 -13350.312834] Model parameter optimization (eps = 3.000000)
[02:06:51 -13308.235014] FAST spr round 1 (radius: 25)
[02:07:19 -11957.495618] FAST spr round 2 (radius: 25)
[02:07:40 -11790.495769] FAST spr round 3 (radius: 25)
[02:07:59 -11784.012725] FAST spr round 4 (radius: 25)
[02:08:16 -11783.186673] FAST spr round 5 (radius: 25)
[02:08:33 -11783.186383] Model parameter optimization (eps = 1.000000)
[02:08:40 -11775.299244] SLOW spr round 1 (radius: 5)
[02:09:02 -11773.886649] SLOW spr round 2 (radius: 5)
[02:09:23 -11773.528483] SLOW spr round 3 (radius: 5)
[02:09:43 -11773.526512] SLOW spr round 4 (radius: 10)
[02:10:06 -11767.726962] SLOW spr round 5 (radius: 5)
[02:10:36 -11764.722758] SLOW spr round 6 (radius: 5)
[02:11:02 -11764.051126] SLOW spr round 7 (radius: 5)
[02:11:24 -11764.050902] SLOW spr round 8 (radius: 10)
[02:11:47 -11764.050867] SLOW spr round 9 (radius: 15)
[02:12:19 -11762.974263] SLOW spr round 10 (radius: 5)
[02:12:50 -11762.524438] SLOW spr round 11 (radius: 5)
[02:13:17 -11762.509819] SLOW spr round 12 (radius: 10)
[02:13:41 -11762.509721] SLOW spr round 13 (radius: 15)
[02:14:13 -11762.509721] SLOW spr round 14 (radius: 20)
[02:15:00 -11762.509721] SLOW spr round 15 (radius: 25)
[02:15:55 -11762.509704] Model parameter optimization (eps = 0.100000)

[02:15:58] [worker #0] ML tree search #17, logLikelihood: -11762.431165

[02:15:58 -46550.740447] Initial branch length optimization
[02:15:58 -37344.124509] Model parameter optimization (eps = 10.000000)
[02:16:12 -37102.320182] AUTODETECT spr round 1 (radius: 5)
[02:16:31 -24572.136901] AUTODETECT spr round 2 (radius: 10)
[02:16:54 -17499.954814] AUTODETECT spr round 3 (radius: 15)
[02:17:20 -15019.924844] AUTODETECT spr round 4 (radius: 20)
[02:17:53 -13916.815053] AUTODETECT spr round 5 (radius: 25)
[02:18:36 -13661.187930] SPR radius for FAST iterations: 25 (autodetect)
[02:18:36 -13661.187930] Model parameter optimization (eps = 3.000000)
[02:18:49 -13626.173776] FAST spr round 1 (radius: 25)
[02:19:17 -11904.102729] FAST spr round 2 (radius: 25)
[02:19:40 -11834.039495] FAST spr round 3 (radius: 25)
[02:20:00 -11793.623254] FAST spr round 4 (radius: 25)
[02:20:18 -11792.338000] FAST spr round 5 (radius: 25)
[02:20:36 -11792.326405] Model parameter optimization (eps = 1.000000)
[02:20:48 -11778.023255] SLOW spr round 1 (radius: 5)
[02:21:10 -11772.231597] SLOW spr round 2 (radius: 5)
[02:21:33 -11770.388519] SLOW spr round 3 (radius: 5)
[02:21:54 -11770.388184] SLOW spr round 4 (radius: 10)
[02:22:06] [worker #1] ML tree search #20, logLikelihood: -11793.297972
[02:22:18 -11768.569018] SLOW spr round 5 (radius: 5)
[02:22:47 -11768.320973] SLOW spr round 6 (radius: 5)
[02:23:11 -11768.320847] SLOW spr round 7 (radius: 10)
[02:23:36 -11768.249355] SLOW spr round 8 (radius: 15)
[02:24:07 -11767.921402] SLOW spr round 9 (radius: 5)
[02:24:38 -11767.581166] SLOW spr round 10 (radius: 5)
[02:25:04 -11767.581110] SLOW spr round 11 (radius: 10)
[02:25:28 -11767.581067] SLOW spr round 12 (radius: 15)
[02:25:58 -11762.547233] SLOW spr round 13 (radius: 5)
[02:26:29 -11762.545385] SLOW spr round 14 (radius: 10)
[02:26:56 -11762.545295] SLOW spr round 15 (radius: 15)
[02:27:25 -11762.545277] SLOW spr round 16 (radius: 20)
[02:28:09 -11762.545273] SLOW spr round 17 (radius: 25)
[02:29:03 -11760.537880] SLOW spr round 18 (radius: 5)
[02:29:34 -11760.536922] SLOW spr round 19 (radius: 10)
[02:30:02 -11760.536833] SLOW spr round 20 (radius: 15)
[02:30:32 -11760.536829] SLOW spr round 21 (radius: 20)
[02:31:17 -11760.536825] SLOW spr round 22 (radius: 25)
[02:32:10 -11760.536825] Model parameter optimization (eps = 0.100000)

[02:32:20] [worker #0] ML tree search #19, logLikelihood: -11758.243655


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.295124,0.747640) (0.142072,1.815504) (0.382881,0.603154) (0.179923,1.614493) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -11753.336643

AIC score: 25016.673287 / AICc score: 1166576.673287 / BIC score: 27121.229553
Free parameters (model + branch lengths): 755

WARNING: Number of free parameters (K=755) is larger than alignment size (n=120).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96PX6/3_mltree/Q96PX6.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96PX6/3_mltree/Q96PX6.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96PX6/3_mltree/Q96PX6.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96PX6/3_mltree/Q96PX6.raxml.log

Analysis started: 20-Jul-2021 13:39:10 / finished: 20-Jul-2021 16:11:30

Elapsed time: 9140.776 seconds