RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 19-Jul-2021 13:07:03 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96NY7/2_msa/Q96NY7_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96NY7/3_mltree/Q96NY7.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96NY7/4_raxmlng_ancestral/Q96NY7 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626689223 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96NY7/2_msa/Q96NY7_nogap_msa.fasta [00:00:00] Loaded alignment with 745 taxa and 704 sites WARNING: Sequences tr_B4R4K6_B4R4K6_DROSI_7240 and tr_B4IG79_B4IG79_DROSE_7238 are exactly identical! WARNING: Sequences tr_E2AUL5_E2AUL5_CAMFO_104421 and tr_A0A087ZS24_A0A087ZS24_APIME_7460 are exactly identical! WARNING: Sequences tr_E2AUL5_E2AUL5_CAMFO_104421 and tr_A0A158P310_A0A158P310_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AUL5_E2AUL5_CAMFO_104421 and tr_A0A026W3Y3_A0A026W3Y3_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2AUL5_E2AUL5_CAMFO_104421 and tr_A0A0L7RD19_A0A0L7RD19_9HYME_597456 are exactly identical! WARNING: Sequences tr_E2AUL5_E2AUL5_CAMFO_104421 and tr_A0A151WYN2_A0A151WYN2_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2AUL5_E2AUL5_CAMFO_104421 and tr_A0A2A3E7L5_A0A2A3E7L5_APICC_94128 are exactly identical! WARNING: Sequences tr_M3YHX2_M3YHX2_MUSPF_9669 and tr_M3WNY6_M3WNY6_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YHX2_M3YHX2_MUSPF_9669 and tr_A0A2Y9JZU6_A0A2Y9JZU6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YWL1_M3YWL1_MUSPF_9669 and tr_G1LU49_G1LU49_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YWL1_M3YWL1_MUSPF_9669 and tr_A0A2Y9KFU0_A0A2Y9KFU0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G3QS42_G3QS42_GORGO_9595 and tr_A0A2R9B4E0_A0A2R9B4E0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R6T1_G3R6T1_GORGO_9595 and tr_A0A2J8NXZ6_A0A2J8NXZ6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R6T1_G3R6T1_GORGO_9595 and sp_O00299_CLIC1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R6T1_G3R6T1_GORGO_9595 and tr_A0A2R9APF0_A0A2R9APF0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3S4N2_G3S4N2_GORGO_9595 and tr_H2R4G9_H2R4G9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3S4N2_G3S4N2_GORGO_9595 and sp_O15247_CLIC2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3S4N2_G3S4N2_GORGO_9595 and tr_A0A2R9C5B1_A0A2R9C5B1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2PXC0_H2PXC0_PONAB_9601 and tr_A0A2K5LIU3_A0A2K5LIU3_CERAT_9531 are exactly identical! WARNING: Sequences tr_Q29H06_Q29H06_DROPS_46245 and tr_B4H0M2_B4H0M2_DROPE_7234 are exactly identical! WARNING: Sequences tr_J9P6I3_J9P6I3_CANLF_9615 and tr_A0A2U3XZT3_A0A2U3XZT3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_J9P6I3_J9P6I3_CANLF_9615 and tr_A0A384BRW6_A0A384BRW6_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3SHH1_A0A2I3SHH1_PANTR_9598 and tr_A0A2R9CF70_A0A2R9CF70_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2PYC1_H2PYC1_PANTR_9598 and sp_Q9Y696_CLIC4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PYC1_H2PYC1_PANTR_9598 and tr_F7EXF2_F7EXF2_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A0J9XYJ1_A0A0J9XYJ1_BRUMA_6279 and tr_A0A0R3Q392_A0A0R3Q392_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A1D5RJ72_A0A1D5RJ72_MACMU_9544 and tr_A0A096NR20_A0A096NR20_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5RJ72_A0A1D5RJ72_MACMU_9544 and tr_A0A2K6CA07_A0A2K6CA07_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6PP70_F6PP70_MACMU_9544 and tr_A0A096NDH5_A0A096NDH5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6PP70_F6PP70_MACMU_9544 and tr_A0A2K5M431_A0A2K5M431_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6PP70_F6PP70_MACMU_9544 and tr_A0A2K6C2Z9_A0A2K6C2Z9_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7E2U2_F7E2U2_MACMU_9544 and tr_G7P4R6_G7P4R6_MACFA_9541 are exactly identical! WARNING: Sequences tr_H9EMZ8_H9EMZ8_MACMU_9544 and tr_A0A096NH69_A0A096NH69_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H9EMZ8_H9EMZ8_MACMU_9544 and tr_A0A0D9R8K1_A0A0D9R8K1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H9EMZ8_H9EMZ8_MACMU_9544 and tr_A0A2K5N896_A0A2K5N896_CERAT_9531 are exactly identical! WARNING: Sequences tr_H9EMZ8_H9EMZ8_MACMU_9544 and tr_A0A2K6E2T5_A0A2K6E2T5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A287ADH9_A0A287ADH9_PIG_9823 and sp_Q9XSA7_CLIC4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A287ADH9_A0A287ADH9_PIG_9823 and tr_A0A2U4BLH4_A0A2U4BLH4_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A287ADH9_A0A287ADH9_PIG_9823 and tr_A0A2Y9DM31_A0A2Y9DM31_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A287ADH9_A0A287ADH9_PIG_9823 and tr_A0A2Y9LCM1_A0A2Y9LCM1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A287ADH9_A0A287ADH9_PIG_9823 and tr_A0A2Y9STD7_A0A2Y9STD7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G7Q239_G7Q239_MACFA_9541 and tr_A0A096MLZ7_A0A096MLZ7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7Q239_G7Q239_MACFA_9541 and tr_A0A0D9R2F3_A0A0D9R2F3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G7Q239_G7Q239_MACFA_9541 and tr_A0A2K6BK66_A0A2K6BK66_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7Q239_G7Q239_MACFA_9541 and tr_A0A2K5Z5F0_A0A2K5Z5F0_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q5E9B7_CLIC1_BOVIN_9913 and tr_A0A2Y9EY05_A0A2Y9EY05_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q5E9B7_CLIC1_BOVIN_9913 and tr_A0A384B3Y4_A0A384B3Y4_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A096NIR0_A0A096NIR0_PAPAN_9555 and tr_A0A2K5KUY7_A0A2K5KUY7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NRQ1_A0A096NRQ1_PAPAN_9555 and tr_A0A0D9RUC3_A0A0D9RUC3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096NRQ1_A0A096NRQ1_PAPAN_9555 and tr_A0A2K5P8T1_A0A2K5P8T1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A091JD02_A0A091JD02_EGRGA_188379 and tr_A0A091VVZ5_A0A091VVZ5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JD02_A0A091JD02_EGRGA_188379 and tr_A0A087R950_A0A087R950_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JD02_A0A091JD02_EGRGA_188379 and tr_A0A0A0AUQ1_A0A0A0AUQ1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091V7V4_A0A091V7V4_NIPNI_128390 and tr_A0A087RKL1_A0A087RKL1_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0V0S0H5_A0A0V0S0H5_9BILA_6336 and tr_A0A0V0VTL4_A0A0V0VTL4_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0WC63_A0A0V0WC63_9BILA_92179 and tr_A0A0V1KYX8_A0A0V1KYX8_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0WC63_A0A0V0WC63_9BILA_92179 and tr_A0A0V1NFI3_A0A0V1NFI3_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0WC63_A0A0V0WC63_9BILA_92179 and tr_A0A0V0TAJ5_A0A0V0TAJ5_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0WXK6_A0A0V0WXK6_9BILA_92179 and tr_A0A0V1KVW6_A0A0V1KVW6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0WXK6_A0A0V0WXK6_9BILA_92179 and tr_A0A0V0U7S4_A0A0V0U7S4_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A226MPG2_A0A226MPG2_CALSU_9009 and tr_A0A226PHT4_A0A226PHT4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MYK9_A0A226MYK9_CALSU_9009 and tr_A0A226PDV1_A0A226PDV1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U4BIH8_A0A2U4BIH8_TURTR_9739 and tr_A0A2Y9MSQ0_A0A2Y9MSQ0_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3WTZ6_A0A2U3WTZ6_ODORO_9708 and tr_A0A2U3Y1A3_A0A2U3Y1A3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3X093_A0A2U3X093_ODORO_9708 and tr_A0A2U3Y474_A0A2U3Y474_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A384CEH9_A0A384CEH9_URSMA_29073 and tr_A0A383ZUF0_A0A383ZUF0_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 66 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96NY7/4_raxmlng_ancestral/Q96NY7.raxml.reduced.phy Alignment comprises 1 partitions and 704 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 704 Gaps: 63.82 % Invariant sites: 0.85 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96NY7/4_raxmlng_ancestral/Q96NY7.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96NY7/3_mltree/Q96NY7.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 176 / 14080 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -94934.347566 [00:00:00 -94934.347566] Initial branch length optimization [00:00:01 -91556.319383] Model parameter optimization (eps = 0.100000) [00:01:09] Tree #1, final logLikelihood: -90728.041960 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.107886,0.216278) (0.062792,0.341811) (0.229608,0.363530) (0.599714,1.453583) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96NY7/4_raxmlng_ancestral/Q96NY7.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96NY7/4_raxmlng_ancestral/Q96NY7.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96NY7/4_raxmlng_ancestral/Q96NY7.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96NY7/4_raxmlng_ancestral/Q96NY7.raxml.log Analysis started: 19-Jul-2021 13:07:03 / finished: 19-Jul-2021 13:08:16 Elapsed time: 73.651 seconds