RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jul-2021 09:20:30 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96MP8/2_msa/Q96MP8_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96MP8/3_mltree/Q96MP8 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96MP8/2_msa/Q96MP8_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 105 sites WARNING: Sequences tr_B4QC32_B4QC32_DROSI_7240 and tr_B4ILK5_B4ILK5_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4R1Q0_B4R1Q0_DROSI_7240 and tr_B4II53_B4II53_DROSE_7238 are exactly identical! WARNING: Sequences tr_E9FRU3_E9FRU3_DAPPU_6669 and tr_A0A164SQU0_A0A164SQU0_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E1ZZA3_E1ZZA3_CAMFO_104421 and tr_A0A158NEG7_A0A158NEG7_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E1ZZA3_E1ZZA3_CAMFO_104421 and tr_F4WVJ1_F4WVJ1_ACREC_103372 are exactly identical! WARNING: Sequences tr_E1ZZA3_E1ZZA3_CAMFO_104421 and tr_E2B9K5_E2B9K5_HARSA_610380 are exactly identical! WARNING: Sequences tr_E1ZZA3_E1ZZA3_CAMFO_104421 and tr_A0A151XJC1_A0A151XJC1_9HYME_64791 are exactly identical! WARNING: Sequences tr_E1ZZA3_E1ZZA3_CAMFO_104421 and tr_A0A195ENC7_A0A195ENC7_9HYME_471704 are exactly identical! WARNING: Sequences tr_E1ZZA3_E1ZZA3_CAMFO_104421 and tr_A0A195BV25_A0A195BV25_9HYME_520822 are exactly identical! WARNING: Sequences tr_E1ZZA3_E1ZZA3_CAMFO_104421 and tr_A0A195FL31_A0A195FL31_9HYME_34720 are exactly identical! WARNING: Sequences tr_E1ZZA3_E1ZZA3_CAMFO_104421 and tr_A0A195CPJ5_A0A195CPJ5_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A2R8QF04_A0A2R8QF04_DANRE_7955 and sp_Q6DG99_KCTD6_DANRE_7955 are exactly identical! WARNING: Sequences tr_Q6P7X5_Q6P7X5_DANRE_7955 and tr_A0A3B1JUP0_A0A3B1JUP0_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A1I7Q3Z4_A0A1I7Q3Z4_CHICK_9031 and sp_Q5F3E8_BACD2_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A1I7Q3Z4_A0A1I7Q3Z4_CHICK_9031 and tr_U3I6F2_U3I6F2_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1I7Q3Z4_A0A1I7Q3Z4_CHICK_9031 and tr_A0A093H7X3_A0A093H7X3_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1I7Q3Z4_A0A1I7Q3Z4_CHICK_9031 and tr_A0A226MWC8_A0A226MWC8_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_G1N9A0_G1N9A0_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_U3IDW6_U3IDW6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A091ISZ5_A0A091ISZ5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A091WL66_A0A091WL66_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A087RC19_A0A087RC19_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A093JT73_A0A093JT73_STRCA_441894 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A091WB89_A0A091WB89_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A099YX93_A0A099YX93_TINGU_94827 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A091GES8_A0A091GES8_9AVES_55661 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A0A0B1L9_A0A0A0B1L9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A2I0M9M9_A0A2I0M9M9_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A093IXP9_A0A093IXP9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A091HGK1_A0A091HGK1_CALAN_9244 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A1V4JIR7_A0A1V4JIR7_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A226NF60_A0A226NF60_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A226PG99_A0A226PG99_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1C6Z3_E1C6Z3_CHICK_9031 and tr_G3USL5_G3USL5_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NX81_F1NX81_CHICK_9031 and tr_H0ZDQ9_H0ZDQ9_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NX81_F1NX81_CHICK_9031 and tr_A0A0Q3RF63_A0A0Q3RF63_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NX81_F1NX81_CHICK_9031 and tr_A0A091VYF7_A0A091VYF7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NX81_F1NX81_CHICK_9031 and tr_A0A2I0MMW2_A0A2I0MMW2_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NX81_F1NX81_CHICK_9031 and tr_A0A1V4JGA4_A0A1V4JGA4_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NX81_F1NX81_CHICK_9031 and tr_A0A218VFD6_A0A218VFD6_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NX81_F1NX81_CHICK_9031 and tr_A0A226PUN3_A0A226PUN3_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_M3Z7Y9_M3Z7Y9_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A2I3HXD5_A0A2I3HXD5_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_G1PQG5_G1PQG5_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_G3R3J8_G3R3J8_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_H2NES6_H2NES6_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_E2RAN4_E2RAN4_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_H2Q4H2_H2Q4H2_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_F7ASN9_F7ASN9_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_W5P930_W5P930_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_I3MXU5_I3MXU5_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_H0Y0I4_H0Y0I4_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_H0UTT0_H0UTT0_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and sp_Q4G0X4_KCD21_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_F7HK74_F7HK74_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_G5AW64_G5AW64_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_U3AVD3_U3AVD3_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_M3VK38_M3VK38_PIG_9823 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_D2H3T7_D2H3T7_AILME_9646 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_G7PNB8_G7PNB8_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_G3MYS7_G3MYS7_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_L5JNT5_L5JNT5_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A337S853_A0A337S853_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A096N752_A0A096N752_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A0D9S952_A0A0D9S952_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A1S3EZJ5_A0A1S3EZJ5_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A1U7USF3_A0A1U7USF3_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A2K5KLZ4_A0A2K5KLZ4_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A2K6ASJ6_A0A2K6ASJ6_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A2K5XLU1_A0A2K5XLU1_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A2R8Z5X6_A0A2R8Z5X6_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A2U3V8X4_A0A2U3V8X4_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A2U3YZ83_A0A2U3YZ83_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A2Y9KKH0_A0A2Y9KKH0_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A2Y9PVU3_A0A2Y9PVU3_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A2Y9FGA6_A0A2Y9FGA6_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A384DF27_A0A384DF27_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q3URF8_KCD21_MOUSE_10090 and tr_A0A384AKB1_A0A384AKB1_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q6P7W2_SHKB1_MOUSE_10090 and sp_P0C5J9_SHKB1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8BGV7_BACD1_MOUSE_10090 and tr_G3I4I5_G3I4I5_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q8BGV7_BACD1_MOUSE_10090 and tr_G3TK22_G3TK22_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q8BJK1_KCTD7_MOUSE_10090 and tr_G1T8W6_G1T8W6_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q8BJK1_KCTD7_MOUSE_10090 and sp_B1WC97_KCTD7_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8BJK1_KCTD7_MOUSE_10090 and tr_A0A1U7R3P3_A0A1U7R3P3_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_G1QM64_G1QM64_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_G1PDQ6_G1PDQ6_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_G3RTF0_G3RTF0_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_H2NIK7_H2NIK7_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_F1PXR3_F1PXR3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_K7ANR5_K7ANR5_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_F7D8S4_F7D8S4_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_W5Q2U0_W5Q2U0_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_I3MPZ3_I3MPZ3_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_H0WN36_H0WN36_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A286XFY2_A0A286XFY2_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and sp_Q9H3F6_BACD3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A1D5Q9X2_A0A1D5Q9X2_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_G5BDR7_G5BDR7_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_G3T9C3_G3T9C3_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_U3E2C8_U3E2C8_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_F1RGB8_F1RGB8_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_G1MDV1_G1MDV1_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_G7PI65_G7PI65_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A6QLV6_A6QLV6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A337SDB5_A0A337SDB5_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A096MXR8_A0A096MXR8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A091D0R3_A0A091D0R3_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A0D9S356_A0A0D9S356_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A1S3WEW4_A0A1S3WEW4_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A3Q0DCP4_A0A3Q0DCP4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A2K5LUS2_A0A2K5LUS2_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A2K6AUF8_A0A2K6AUF8_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A2K5XW86_A0A2K5XW86_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A2R8ZMD8_A0A2R8ZMD8_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A2U4CKI4_A0A2U4CKI4_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A2U3X2C0_A0A2U3X2C0_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A2Y9KH14_A0A2Y9KH14_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A2Y9LAC5_A0A2Y9LAC5_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A2Y9FS66_A0A2Y9FS66_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A384DG93_A0A384DG93_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XXM6_M3XXM6_MUSPF_9669 and tr_A0A383ZYF9_A0A383ZYF9_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YXN2_M3YXN2_MUSPF_9669 and tr_F6Z191_F6Z191_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YXN2_M3YXN2_MUSPF_9669 and tr_A0A2U3WAT2_A0A2U3WAT2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YXN2_M3YXN2_MUSPF_9669 and tr_A0A2U3XEN9_A0A2U3XEN9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YXN2_M3YXN2_MUSPF_9669 and tr_A0A2Y9J690_A0A2Y9J690_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YXN2_M3YXN2_MUSPF_9669 and tr_A0A384CPN2_A0A384CPN2_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2I3HI61_A0A2I3HI61_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G1P3J0_G1P3J0_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G3I4V9_G3I4V9_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G3R567_G3R567_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2J8T1E8_A0A2J8T1E8_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G1SWX2_G1SWX2_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_F6Y598_F6Y598_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_H2R3I1_H2R3I1_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_F7DTJ2_F7DTJ2_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_W5PRE8_W5PRE8_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G3V6Z2_G3V6Z2_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_I3M7I5_I3M7I5_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_H0XTH4_H0XTH4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_H0WAB1_H0WAB1_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and sp_Q8NC69_KCTD6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_F7H0P7_F7H0P7_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G5BUK6_G5BUK6_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G3TND8_G3TND8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_F6TAC4_F6TAC4_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_F2Z5T4_F2Z5T4_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G1M033_G1M033_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G7NZB5_G7NZB5_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A6QLT0_A6QLT0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_L5KAJ2_L5KAJ2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_M3WTR4_M3WTR4_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A091D421_A0A091D421_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A0D9RI93_A0A0D9RI93_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A1S3AMW6_A0A1S3AMW6_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A1S3EMZ6_A0A1S3EMZ6_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A1U7TUF8_A0A1U7TUF8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A1U8C4V2_A0A1U8C4V2_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2K5LXE0_A0A2K5LXE0_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2K6DF58_A0A2K6DF58_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2R9AGM2_A0A2R9AGM2_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2U4CD00_A0A2U4CD00_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2U4CD01_A0A2U4CD01_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2U4CD06_A0A2U4CD06_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2U3ZSX1_A0A2U3ZSX1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2U3YVV3_A0A2U3YVV3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2Y9QVS3_A0A2Y9QVS3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2Y9IZ41_A0A2Y9IZ41_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2Y9NGL0_A0A2Y9NGL0_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2Y9SUR4_A0A2Y9SUR4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A384D3E8_A0A384D3E8_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A384AYA1_A0A384AYA1_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A2I2ZRX9_A0A2I2ZRX9_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_E2RD99_E2RD99_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A2J8QG26_A0A2J8QG26_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_F6WEE8_F6WEE8_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_W5P9W9_W5P9W9_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_I3M3W9_I3M3W9_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and sp_Q8TBC3_SHKB1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A1D5Q4G9_A0A1D5Q4G9_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_F7G6M1_F7G6M1_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A287AI32_A0A287AI32_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_G1M129_G1M129_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_G7PXM1_G7PXM1_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and sp_A3KMV1_SHKB1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_L5L462_L5L462_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_M3VVW3_M3VVW3_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A0A0MWL5_A0A0A0MWL5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A1S3GJM6_A0A1S3GJM6_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A2K5NDG1_A0A2K5NDG1_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A2K5ZF88_A0A2K5ZF88_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A2R9CLG4_A0A2R9CLG4_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A2U3VMV1_A0A2U3VMV1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A2Y9FRH5_A0A2Y9FRH5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A384BXL9_A0A384BXL9_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z1W3_M3Z1W3_MUSPF_9669 and tr_A0A383YVG4_A0A383YVG4_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Z524_M3Z524_MUSPF_9669 and tr_G3MWZ7_G3MWZ7_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Z524_M3Z524_MUSPF_9669 and tr_A0A0D9SE95_A0A0D9SE95_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Z524_M3Z524_MUSPF_9669 and tr_A0A2Y9JLU4_A0A2Y9JLU4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B4J6H1_B4J6H1_DROGR_7222 and tr_B4LPG5_B4LPG5_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4J6H1_B4J6H1_DROGR_7222 and tr_B4KLS8_B4KLS8_DROMO_7230 are exactly identical! WARNING: Sequences tr_A0A2I3HMZ7_A0A2I3HMZ7_NOMLE_61853 and tr_A0A2I2ZX05_A0A2I2ZX05_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HMZ7_A0A2I3HMZ7_NOMLE_61853 and tr_A0A2I3TPU2_A0A2I3TPU2_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HMZ7_A0A2I3HMZ7_NOMLE_61853 and sp_Q96MP8_KCTD7_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HMZ7_A0A2I3HMZ7_NOMLE_61853 and tr_H9EQG4_H9EQG4_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3HMZ7_A0A2I3HMZ7_NOMLE_61853 and tr_G8F4J8_G8F4J8_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3HMZ7_A0A2I3HMZ7_NOMLE_61853 and tr_A0A2I3LYH9_A0A2I3LYH9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HMZ7_A0A2I3HMZ7_NOMLE_61853 and tr_A0A0D9S0A6_A0A0D9S0A6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3HMZ7_A0A2I3HMZ7_NOMLE_61853 and tr_A0A2K5MWT4_A0A2K5MWT4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HMZ7_A0A2I3HMZ7_NOMLE_61853 and tr_A0A2K6ED79_A0A2K6ED79_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HMZ7_A0A2I3HMZ7_NOMLE_61853 and tr_A0A2K6A7B7_A0A2K6A7B7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_G1PC21_G1PC21_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_G3QPI7_G3QPI7_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_H2NT28_H2NT28_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and sp_Q5RBH4_BACD2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_G1STR3_G1STR3_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_E2QVW0_E2QVW0_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_H2R9L0_H2R9L0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_F6PH15_F6PH15_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_W5Q815_W5Q815_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_I3M9Z3_I3M9Z3_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and sp_Q13829_BACD2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_G5BVN5_G5BVN5_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_G3SY76_G3SY76_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_F7I5U0_F7I5U0_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_I3LM60_I3LM60_PIG_9823 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_G7PTW6_G7PTW6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_E1BLB2_E1BLB2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_L5JSW4_L5JSW4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_M3X7C4_M3X7C4_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_A0A096P384_A0A096P384_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_A0A091D5P8_A0A091D5P8_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_A0A0D9R4U2_A0A0D9R4U2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_A0A1S3F6N3_A0A1S3F6N3_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_A0A1U7UHZ4_A0A1U7UHZ4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_A0A2K6CRL1_A0A2K6CRL1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_A0A2K5YJP4_A0A2K5YJP4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QN25_G1QN25_NOMLE_61853 and tr_A0A2R8ZN02_A0A2R8ZN02_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3Z9T1_M3Z9T1_NOMLE_61853 and tr_H2QAV9_H2QAV9_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Z9T1_M3Z9T1_NOMLE_61853 and sp_Q8WZ19_BACD1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1P4H9_G1P4H9_MYOLU_59463 and tr_A0A2U3YP77_A0A2U3YP77_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1P4H9_G1P4H9_MYOLU_59463 and tr_A0A2Y9ECA1_A0A2Y9ECA1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G3HI82_G3HI82_CRIGR_10029 and sp_Q7TPL3_BACD3_RAT_10116 are exactly identical! WARNING: Sequences tr_G3HI82_G3HI82_CRIGR_10029 and tr_A0A1S3F158_A0A1S3F158_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G3I5C8_G3I5C8_CRIGR_10029 and tr_D4ADH5_D4ADH5_RAT_10116 are exactly identical! WARNING: Sequences tr_G3I5C8_G3I5C8_CRIGR_10029 and tr_A0A1U7R9C6_A0A1U7R9C6_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3IKG2_G3IKG2_CRIGR_10029 and tr_A0A337SJ37_A0A337SJ37_FELCA_9685 are exactly identical! WARNING: Sequences tr_G3RCI8_G3RCI8_GORGO_9595 and tr_H2Q4G9_H2Q4G9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RCI8_G3RCI8_GORGO_9595 and sp_Q9BQ13_KCD14_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RCI8_G3RCI8_GORGO_9595 and tr_A0A2R9CB17_A0A2R9CB17_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RHW8_G3RHW8_GORGO_9595 and tr_A0A2J8TK76_A0A2J8TK76_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RHW8_G3RHW8_GORGO_9595 and tr_I3MVI5_I3MVI5_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G3RHW8_G3RHW8_GORGO_9595 and tr_H0X2W9_H0X2W9_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G3RHW8_G3RHW8_GORGO_9595 and tr_A0A096NMK1_A0A096NMK1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RHW8_G3RHW8_GORGO_9595 and tr_A0A0D9R1E4_A0A0D9R1E4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RHW8_G3RHW8_GORGO_9595 and tr_A0A1U7UI72_A0A1U7UI72_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3RHW8_G3RHW8_GORGO_9595 and tr_A0A2K5MDV8_A0A2K5MDV8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RHW8_G3RHW8_GORGO_9595 and tr_A0A2K6BDT4_A0A2K6BDT4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RHW8_G3RHW8_GORGO_9595 and tr_A0A2K5Y444_A0A2K5Y444_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3RHW8_G3RHW8_GORGO_9595 and tr_A0A2Y9E5C3_A0A2Y9E5C3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_C3Z3Q5_C3Z3Q5_BRAFL_7739 and tr_C3Z3Q6_C3Z3Q6_BRAFL_7739 are exactly identical! WARNING: Sequences tr_G1N3E4_G1N3E4_MELGA_9103 and tr_A0A091JBN9_A0A091JBN9_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1N3E4_G1N3E4_MELGA_9103 and tr_A0A091VQ19_A0A091VQ19_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1N3E4_G1N3E4_MELGA_9103 and tr_A0A087RAX0_A0A087RAX0_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1N3E4_G1N3E4_MELGA_9103 and tr_A0A093I2Q2_A0A093I2Q2_STRCA_441894 are exactly identical! WARNING: Sequences tr_G1N3E4_G1N3E4_MELGA_9103 and tr_A0A099ZC41_A0A099ZC41_TINGU_94827 are exactly identical! WARNING: Sequences tr_G1N3E4_G1N3E4_MELGA_9103 and tr_A0A091G448_A0A091G448_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1N3E4_G1N3E4_MELGA_9103 and tr_A0A0A0A6E3_A0A0A0A6E3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1N3E4_G1N3E4_MELGA_9103 and tr_A0A1V4JSB4_A0A1V4JSB4_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1N3E4_G1N3E4_MELGA_9103 and tr_A0A226N3I4_A0A226N3I4_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1N3E4_G1N3E4_MELGA_9103 and tr_A0A226PXN9_A0A226PXN9_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q293H2_Q293H2_DROPS_46245 and tr_B4GBI0_B4GBI0_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2QZK8_E2QZK8_CANLF_9615 and tr_A0A287BQA2_A0A287BQA2_PIG_9823 are exactly identical! WARNING: Sequences tr_E2QZK8_E2QZK8_CANLF_9615 and tr_L5KGZ4_L5KGZ4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_E2QZK8_E2QZK8_CANLF_9615 and tr_M3XGC5_M3XGC5_FELCA_9685 are exactly identical! WARNING: Sequences tr_E2QZK8_E2QZK8_CANLF_9615 and tr_A0A2U3VQ10_A0A2U3VQ10_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2QZK8_E2QZK8_CANLF_9615 and tr_A0A2Y9LF86_A0A2Y9LF86_ENHLU_391180 are exactly identical! WARNING: Sequences tr_E2QZK8_E2QZK8_CANLF_9615 and tr_A0A2Y9PL69_A0A2Y9PL69_DELLE_9749 are exactly identical! WARNING: Sequences tr_E2QZK8_E2QZK8_CANLF_9615 and tr_A0A2Y9ESS3_A0A2Y9ESS3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F7B231_F7B231_MONDO_13616 and tr_F7ECP0_F7ECP0_MONDO_13616 are exactly identical! WARNING: Sequences tr_F7B5S1_F7B5S1_MONDO_13616 and tr_G3W8D3_G3W8D3_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7EHK7_F7EHK7_MONDO_13616 and tr_G3W4X3_G3W4X3_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5PLA0_W5PLA0_SHEEP_9940 and sp_A4IFB4_KCTD7_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PLA0_W5PLA0_SHEEP_9940 and tr_A0A2U4A9A7_A0A2U4A9A7_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5PLA0_W5PLA0_SHEEP_9940 and tr_A0A2Y9PMC2_A0A2Y9PMC2_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5PLA0_W5PLA0_SHEEP_9940 and tr_A0A2Y9TL61_A0A2Y9TL61_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5PLA0_W5PLA0_SHEEP_9940 and tr_A0A384AGW6_A0A384AGW6_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A3B5Q7Q5_A0A3B5Q7Q5_XIPMA_8083 and tr_A0A087Y4Z0_A0A087Y4Z0_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5Q7Q5_A0A3B5Q7Q5_XIPMA_8083 and tr_A0A2I4CWL6_A0A2I4CWL6_9TELE_52670 are exactly identical! WARNING: Sequences tr_M4AKN8_M4AKN8_XIPMA_8083 and tr_A0A087XYZ2_A0A087XYZ2_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A087ZR51_A0A087ZR51_APIME_7460 and tr_A0A2A3E1Y7_A0A2A3E1Y7_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088ACU7_A0A088ACU7_APIME_7460 and tr_A0A2A3ET42_A0A2A3ET42_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NJ09_A0A158NJ09_ATTCE_12957 and tr_F4WWQ4_F4WWQ4_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NJ09_A0A158NJ09_ATTCE_12957 and tr_A0A195BLG4_A0A195BLG4_9HYME_520822 are exactly identical! WARNING: Sequences tr_I3K770_I3K770_ORENI_8128 and tr_A0A3B5KIC2_A0A3B5KIC2_TAKRU_31033 are exactly identical! WARNING: Sequences tr_I3K770_I3K770_ORENI_8128 and tr_Q4RSV0_Q4RSV0_TETNG_99883 are exactly identical! WARNING: Sequences tr_I3K770_I3K770_ORENI_8128 and tr_G3P3H2_G3P3H2_GASAC_69293 are exactly identical! WARNING: Sequences tr_I3K770_I3K770_ORENI_8128 and tr_A0A2U9BS73_A0A2U9BS73_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A3B5K423_A0A3B5K423_TAKRU_31033 and tr_Q4RJY2_Q4RJY2_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A286XU97_A0A286XU97_CAVPO_10141 and tr_A0A091ECP5_A0A091ECP5_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A286XU97_A0A286XU97_CAVPO_10141 and tr_A0A1S3A6E9_A0A1S3A6E9_ERIEU_9365 are exactly identical! WARNING: Sequences tr_F4K1X9_F4K1X9_ARATH_3702 and sp_Q9SE95_FIP2_ARATH_3702 are exactly identical! WARNING: Sequences tr_A0A0K0J8L9_A0A0K0J8L9_BRUMA_6279 and tr_A0A0R3QU23_A0A0R3QU23_9BILA_42155 are exactly identical! WARNING: Sequences tr_G7NEE9_G7NEE9_MACMU_9544 and tr_G7PNB4_G7PNB4_MACFA_9541 are exactly identical! WARNING: Sequences tr_G7NEE9_G7NEE9_MACMU_9544 and tr_A0A2I3MVT8_A0A2I3MVT8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7NEE9_G7NEE9_MACMU_9544 and tr_A0A2K5KLU0_A0A2K5KLU0_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7NEE9_G7NEE9_MACMU_9544 and tr_A0A2K6DR96_A0A2K6DR96_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7NEE9_G7NEE9_MACMU_9544 and tr_A0A2K5YAJ7_A0A2K5YAJ7_MANLE_9568 are exactly identical! WARNING: Sequences tr_K7FC26_K7FC26_PELSI_13735 and tr_H0ZAC9_H0ZAC9_TAEGU_59729 are exactly identical! WARNING: Sequences tr_K7FC26_K7FC26_PELSI_13735 and tr_M3XJZ7_M3XJZ7_LATCH_7897 are exactly identical! WARNING: Sequences tr_K7FC26_K7FC26_PELSI_13735 and tr_U3K256_U3K256_FICAL_59894 are exactly identical! WARNING: Sequences tr_K7FC26_K7FC26_PELSI_13735 and tr_A0A151NS12_A0A151NS12_ALLMI_8496 are exactly identical! WARNING: Sequences tr_K7FC26_K7FC26_PELSI_13735 and tr_A0A093QA72_A0A093QA72_9PASS_328815 are exactly identical! WARNING: Sequences tr_K7FC26_K7FC26_PELSI_13735 and tr_A0A3Q0G471_A0A3Q0G471_ALLSI_38654 are exactly identical! WARNING: Sequences tr_K7FC26_K7FC26_PELSI_13735 and tr_A0A218V5H4_A0A218V5H4_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZEI0_H0ZEI0_TAEGU_59729 and tr_U3JQC7_U3JQC7_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZEI0_H0ZEI0_TAEGU_59729 and tr_A0A218ULY3_A0A218ULY3_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZFV5_H0ZFV5_TAEGU_59729 and tr_U3KFG2_U3KFG2_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZFV5_H0ZFV5_TAEGU_59729 and tr_A0A091EP64_A0A091EP64_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZFV5_H0ZFV5_TAEGU_59729 and tr_A0A093QF42_A0A093QF42_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZFV5_H0ZFV5_TAEGU_59729 and tr_A0A218VD56_A0A218VD56_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZS10_H0ZS10_TAEGU_59729 and tr_A0A091J1T0_A0A091J1T0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0ZS10_H0ZS10_TAEGU_59729 and tr_A0A093SGG4_A0A093SGG4_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZS10_H0ZS10_TAEGU_59729 and tr_A0A087RFC3_A0A087RFC3_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZS10_H0ZS10_TAEGU_59729 and tr_A0A093I2G6_A0A093I2G6_STRCA_441894 are exactly identical! WARNING: Sequences tr_H0ZS10_H0ZS10_TAEGU_59729 and tr_A0A218ULP3_A0A218ULP3_9PASE_299123 are exactly identical! WARNING: Sequences tr_F6U3U6_F6U3U6_XENTR_8364 and tr_A0A091FCK7_A0A091FCK7_CORBR_85066 are exactly identical! WARNING: Sequences tr_F6U3U6_F6U3U6_XENTR_8364 and tr_A0A1L8HQ00_A0A1L8HQ00_XENLA_8355 are exactly identical! WARNING: Sequences tr_A8XSL0_A8XSL0_CAEBR_6238 and tr_A0A2G5USL0_A0A2G5USL0_9PELO_1611254 are exactly identical! WARNING: Sequences tr_B3RY70_B3RY70_TRIAD_10228 and tr_A0A369SHI4_A0A369SHI4_9METZ_287889 are exactly identical! WARNING: Sequences tr_F1N648_F1N648_BOVIN_9913 and sp_Q2T9W0_BACD1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_U3JW49_U3JW49_FICAL_59894 and tr_A0A218V2G7_A0A218V2G7_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3KKV8_U3KKV8_FICAL_59894 and tr_A0A091EQA7_A0A091EQA7_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3KKV8_U3KKV8_FICAL_59894 and tr_A0A091J1S7_A0A091J1S7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_U3KKV8_U3KKV8_FICAL_59894 and tr_A0A093RYR3_A0A093RYR3_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3KKV8_U3KKV8_FICAL_59894 and tr_A0A091UNR6_A0A091UNR6_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3KKV8_U3KKV8_FICAL_59894 and tr_A0A0A0A842_A0A0A0A842_CHAVO_50402 are exactly identical! WARNING: Sequences tr_U3KKV8_U3KKV8_FICAL_59894 and tr_A0A2I0M2P2_A0A2I0M2P2_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3KKV8_U3KKV8_FICAL_59894 and tr_A0A093GG96_A0A093GG96_DRYPU_118200 are exactly identical! WARNING: Sequences tr_U3KKV8_U3KKV8_FICAL_59894 and tr_A0A1V4KN88_A0A1V4KN88_PATFA_372326 are exactly identical! WARNING: Sequences tr_U3KKV8_U3KKV8_FICAL_59894 and tr_A0A218UMJ1_A0A218UMJ1_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3I1S0_U3I1S0_ANAPL_8839 and tr_A0A093JMN2_A0A093JMN2_STRCA_441894 are exactly identical! WARNING: Sequences tr_U3I1S0_U3I1S0_ANAPL_8839 and tr_A0A099ZIZ4_A0A099ZIZ4_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A2K6WDK7_A0A2K6WDK7_ONCVO_6282 and tr_A0A182E8P2_A0A182E8P2_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A2I3LXV9_A0A2I3LXV9_PAPAN_9555 and tr_A0A2K5ZVK8_A0A2K5ZVK8_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151N4V0_A0A151N4V0_ALLMI_8496 and tr_A0A1U7S0P5_A0A1U7S0P5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N4Y6_A0A151N4Y6_ALLMI_8496 and tr_A0A1U7SKQ8_A0A1U7SKQ8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N5S8_A0A151N5S8_ALLMI_8496 and tr_A0A1U7RKT3_A0A1U7RKT3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N693_A0A151N693_ALLMI_8496 and tr_A0A3Q0H9H9_A0A3Q0H9H9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3TI60_A0A0Q3TI60_AMAAE_12930 and tr_A0A091F5I9_A0A091F5I9_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A0Q3TI60_A0A0Q3TI60_AMAAE_12930 and tr_A0A091IK63_A0A091IK63_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A0Q3TI60_A0A0Q3TI60_AMAAE_12930 and tr_A0A093QNS1_A0A093QNS1_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A0Q3TI60_A0A0Q3TI60_AMAAE_12930 and tr_A0A091UNK5_A0A091UNK5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A0Q3TI60_A0A0Q3TI60_AMAAE_12930 and tr_A0A087R069_A0A087R069_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0Q3TI60_A0A0Q3TI60_AMAAE_12930 and tr_A0A091W374_A0A091W374_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A0Q3TI60_A0A0Q3TI60_AMAAE_12930 and tr_A0A091H3T0_A0A091H3T0_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0Q3TI60_A0A0Q3TI60_AMAAE_12930 and tr_A0A0A0A756_A0A0A0A756_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0Q3TI60_A0A0Q3TI60_AMAAE_12930 and tr_A0A2I0LYL8_A0A2I0LYL8_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A0Q3TI60_A0A0Q3TI60_AMAAE_12930 and tr_A0A093FVD0_A0A093FVD0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0Q3TI60_A0A0Q3TI60_AMAAE_12930 and tr_A0A091IF20_A0A091IF20_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0Q3TI60_A0A0Q3TI60_AMAAE_12930 and tr_A0A1V4K234_A0A1V4K234_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A091JN13_A0A091JN13_EGRGA_188379 and tr_A0A093QBS0_A0A093QBS0_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091JN13_A0A091JN13_EGRGA_188379 and tr_A0A091VP61_A0A091VP61_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JN13_A0A091JN13_EGRGA_188379 and tr_A0A091WEV5_A0A091WEV5_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091JN13_A0A091JN13_EGRGA_188379 and tr_A0A0A0AGV9_A0A0A0AGV9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JN13_A0A091JN13_EGRGA_188379 and tr_A0A091HTJ2_A0A091HTJ2_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A194QMI5_A0A194QMI5_PAPMA_76193 and tr_A0A194PE83_A0A194PE83_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A091UNR1_A0A091UNR1_NIPNI_128390 and tr_A0A0A0A846_A0A0A0A846_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091UNR1_A0A091UNR1_NIPNI_128390 and tr_A0A093GJT2_A0A093GJT2_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091GEE1_A0A091GEE1_9AVES_55661 and tr_A0A091I3C0_A0A091I3C0_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A2I0M1W7_A0A2I0M1W7_COLLI_8932 and tr_A0A1V4K2L4_A0A1V4K2L4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0M2K4_A0A2I0M2K4_COLLI_8932 and tr_A0A1V4KN97_A0A1V4KN97_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A151JNN5_A0A151JNN5_9HYME_471704 and tr_A0A195D3I7_A0A195D3I7_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1S3XN67_A0A1S3XN67_TOBAC_4097 and tr_A0A1U7YCN0_A0A1U7YCN0_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3PIW3_A0A1S3PIW3_SALSA_8030 and tr_A0A060WMQ3_A0A060WMQ3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3SSI4_A0A1S3SSI4_SALSA_8030 and tr_A0A060YBE5_A0A060YBE5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B5XCE6_B5XCE6_SALSA_8030 and tr_A0A060WLP9_A0A060WLP9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MFS4_A0A226MFS4_CALSU_9009 and tr_A0A226NT59_A0A226NT59_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MYD6_A0A226MYD6_CALSU_9009 and tr_A0A226PDD4_A0A226PDD4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U3V151_A0A2U3V151_TURTR_9739 and tr_A0A2Y9Q2L3_A0A2Y9Q2L3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V151_A0A2U3V151_TURTR_9739 and tr_A0A2Y9FHN5_A0A2Y9FHN5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3V151_A0A2U3V151_TURTR_9739 and tr_A0A384A9F0_A0A384A9F0_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4CG41_A0A2U4CG41_TURTR_9739 and tr_A0A384AK00_A0A384AK00_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3VW79_A0A2U3VW79_ODORO_9708 and tr_A0A2Y9JVA4_A0A2Y9JVA4_ENHLU_391180 are exactly identical! WARNING: Duplicate sequences found: 383 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96MP8/3_mltree/Q96MP8.raxml.reduced.phy Alignment comprises 1 partitions and 105 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 105 / 105 Gaps: 2.16 % Invariant sites: 0.95 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96MP8/3_mltree/Q96MP8.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 105 / 8400 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -178163.922374] Initial branch length optimization [00:00:03 -145068.369381] Model parameter optimization (eps = 10.000000) [00:00:32 -144830.917609] AUTODETECT spr round 1 (radius: 5) [00:02:28 -92304.396981] AUTODETECT spr round 2 (radius: 10) [00:04:32 -64434.460719] AUTODETECT spr round 3 (radius: 15) [00:06:36 -49693.605049] AUTODETECT spr round 4 (radius: 20) [00:08:49 -41333.038113] AUTODETECT spr round 5 (radius: 25) [00:11:13 -40096.763739] SPR radius for FAST iterations: 25 (autodetect) [00:11:13 -40096.763739] Model parameter optimization (eps = 3.000000) [00:11:30 -40028.056507] FAST spr round 1 (radius: 25) [00:13:29 -33746.612771] FAST spr round 2 (radius: 25) [00:15:11 -33106.054744] FAST spr round 3 (radius: 25) [00:16:40 -33053.647619] FAST spr round 4 (radius: 25) [00:18:04 -33031.655387] FAST spr round 5 (radius: 25) [00:19:24 -33023.994457] FAST spr round 6 (radius: 25) [00:20:43 -33023.829360] FAST spr round 7 (radius: 25) [00:22:02 -33023.136138] FAST spr round 8 (radius: 25) [00:23:22 -33023.136052] Model parameter optimization (eps = 1.000000) [00:23:35 -33021.050173] SLOW spr round 1 (radius: 5) [00:25:07 -33018.043697] SLOW spr round 2 (radius: 5) [00:26:39 -33016.983966] SLOW spr round 3 (radius: 5) [00:28:10 -33016.983875] SLOW spr round 4 (radius: 10) [00:29:47 -33016.983828] SLOW spr round 5 (radius: 15) [00:31:57 -33016.633487] SLOW spr round 6 (radius: 5) [00:33:55 -33014.305778] SLOW spr round 7 (radius: 5) [00:35:39 -33014.305709] SLOW spr round 8 (radius: 10) [00:37:21 -33014.305680] SLOW spr round 9 (radius: 15) [00:39:28 -33014.305655] SLOW spr round 10 (radius: 20) [00:42:18 -33014.305655] SLOW spr round 11 (radius: 25) [00:45:54 -33014.305655] Model parameter optimization (eps = 0.100000) [00:46:05] [worker #0] ML tree search #1, logLikelihood: -33013.313235 [00:46:05 -177773.022211] Initial branch length optimization [00:46:08 -144531.901556] Model parameter optimization (eps = 10.000000) [00:46:37 -144305.432932] AUTODETECT spr round 1 (radius: 5) [00:48:35 -90803.725415] AUTODETECT spr round 2 (radius: 10) [00:50:43 -64971.768366] AUTODETECT spr round 3 (radius: 15) [00:52:45 -52958.290053] AUTODETECT spr round 4 (radius: 20) [00:55:08 -45807.973538] AUTODETECT spr round 5 (radius: 25) [00:57:35 -41943.324193] SPR radius for FAST iterations: 25 (autodetect) [00:57:35 -41943.324193] Model parameter optimization (eps = 3.000000) [00:57:50 -41888.494049] FAST spr round 1 (radius: 25) [00:59:54 -33825.248000] FAST spr round 2 (radius: 25) [01:01:33 -33123.833984] FAST spr round 3 (radius: 25) [01:03:02 -33053.212730] FAST spr round 4 (radius: 25) [01:04:25 -33046.431914] FAST spr round 5 (radius: 25) [01:05:47 -33041.729394] FAST spr round 6 (radius: 25) [01:07:07 -33039.380742] FAST spr round 7 (radius: 25) [01:08:27 -33039.380500] Model parameter optimization (eps = 1.000000) [01:08:38 -33036.922711] SLOW spr round 1 (radius: 5) [01:10:10 -33027.108297] SLOW spr round 2 (radius: 5) [01:11:41 -33026.298760] SLOW spr round 3 (radius: 5) [01:13:13 -33026.297777] SLOW spr round 4 (radius: 10) [01:14:51 -33019.824715] SLOW spr round 5 (radius: 5) [01:16:43 -33016.252806] SLOW spr round 6 (radius: 5) [01:17:44] [worker #1] ML tree search #2, logLikelihood: -33018.820604 [01:18:26 -33015.944287] SLOW spr round 7 (radius: 5) [01:20:04 -33015.944015] SLOW spr round 8 (radius: 10) [01:21:43 -33015.148698] SLOW spr round 9 (radius: 5) [01:23:38 -33015.148620] SLOW spr round 10 (radius: 10) [01:25:23 -33015.148576] SLOW spr round 11 (radius: 15) [01:27:31 -33013.589965] SLOW spr round 12 (radius: 5) [01:29:30 -33013.266273] SLOW spr round 13 (radius: 5) [01:31:14 -33013.265579] SLOW spr round 14 (radius: 10) [01:32:58 -33013.265519] SLOW spr round 15 (radius: 15) [01:35:05 -33013.265508] SLOW spr round 16 (radius: 20) [01:37:46 -33013.265508] SLOW spr round 17 (radius: 25) [01:41:17 -33013.265508] Model parameter optimization (eps = 0.100000) [01:41:22] [worker #0] ML tree search #3, logLikelihood: -33013.170329 [01:41:22 -178254.550728] Initial branch length optimization [01:41:25 -145766.851770] Model parameter optimization (eps = 10.000000) [01:41:51 -145550.559385] AUTODETECT spr round 1 (radius: 5) [01:43:49 -90708.125548] AUTODETECT spr round 2 (radius: 10) [01:45:58 -65067.420980] AUTODETECT spr round 3 (radius: 15) [01:48:02 -54882.183432] AUTODETECT spr round 4 (radius: 20) [01:50:26 -48078.132731] AUTODETECT spr round 5 (radius: 25) [01:53:17 -45960.108343] SPR radius for FAST iterations: 25 (autodetect) [01:53:17 -45960.108343] Model parameter optimization (eps = 3.000000) [01:53:30 -45910.283963] FAST spr round 1 (radius: 25) [01:55:27 -37920.084150] FAST spr round 2 (radius: 25) [01:57:06 -33676.050351] FAST spr round 3 (radius: 25) [01:58:39 -33106.930692] FAST spr round 4 (radius: 25) [02:00:06 -33051.414398] FAST spr round 5 (radius: 25) [02:01:09] [worker #1] ML tree search #4, logLikelihood: -33044.843492 [02:01:29 -33045.860593] FAST spr round 6 (radius: 25) [02:02:49 -33045.747670] FAST spr round 7 (radius: 25) [02:04:09 -33045.747340] Model parameter optimization (eps = 1.000000) [02:04:22 -33041.937961] SLOW spr round 1 (radius: 5) [02:05:54 -33021.938468] SLOW spr round 2 (radius: 5) [02:07:28 -33016.742832] SLOW spr round 3 (radius: 5) [02:08:58 -33016.742813] SLOW spr round 4 (radius: 10) [02:10:34 -33015.996517] SLOW spr round 5 (radius: 5) [02:12:27 -33014.532586] SLOW spr round 6 (radius: 5) [02:14:09 -33014.532547] SLOW spr round 7 (radius: 10) [02:15:50 -33011.789318] SLOW spr round 8 (radius: 5) [02:17:42 -33011.061805] SLOW spr round 9 (radius: 5) [02:19:22 -33011.061805] SLOW spr round 10 (radius: 10) [02:21:00 -33011.061805] SLOW spr round 11 (radius: 15) [02:23:11 -33009.352405] SLOW spr round 12 (radius: 5) [02:25:09 -33008.139688] SLOW spr round 13 (radius: 5) [02:26:53 -33008.139683] SLOW spr round 14 (radius: 10) [02:28:34 -33008.139683] SLOW spr round 15 (radius: 15) [02:30:42 -33008.139683] SLOW spr round 16 (radius: 20) [02:33:32 -33008.139683] SLOW spr round 17 (radius: 25) [02:37:04 -33008.139683] Model parameter optimization (eps = 0.100000) [02:37:08] [worker #0] ML tree search #5, logLikelihood: -33008.105978 [02:37:08 -178413.453440] Initial branch length optimization [02:37:11 -145453.735103] Model parameter optimization (eps = 10.000000) [02:37:32 -145247.321064] AUTODETECT spr round 1 (radius: 5) [02:39:27 -89942.898326] AUTODETECT spr round 2 (radius: 10) [02:39:42] [worker #1] ML tree search #6, logLikelihood: -33017.320972 [02:41:31 -61450.948276] AUTODETECT spr round 3 (radius: 15) [02:43:35 -50609.897039] AUTODETECT spr round 4 (radius: 20) [02:45:56 -43770.362758] AUTODETECT spr round 5 (radius: 25) [02:48:51 -40397.706749] SPR radius for FAST iterations: 25 (autodetect) [02:48:51 -40397.706749] Model parameter optimization (eps = 3.000000) [02:49:05 -40338.304783] FAST spr round 1 (radius: 25) [02:50:57 -33426.094991] FAST spr round 2 (radius: 25) [02:52:33 -33075.621986] FAST spr round 3 (radius: 25) [02:54:01 -33033.882298] FAST spr round 4 (radius: 25) [02:55:24 -33025.444883] FAST spr round 5 (radius: 25) [02:56:44 -33025.444211] Model parameter optimization (eps = 1.000000) [02:56:53 -33024.413739] SLOW spr round 1 (radius: 5) [02:58:26 -33013.621779] SLOW spr round 2 (radius: 5) [02:59:56 -33013.565223] SLOW spr round 3 (radius: 10) [03:01:35 -33008.744058] SLOW spr round 4 (radius: 5) [03:03:27 -33008.037996] SLOW spr round 5 (radius: 5) [03:05:06 -33008.036516] SLOW spr round 6 (radius: 10) [03:06:44 -33008.036470] SLOW spr round 7 (radius: 15) [03:08:50 -33008.036469] SLOW spr round 8 (radius: 20) [03:11:41 -33008.036469] SLOW spr round 9 (radius: 25) [03:15:15 -33008.036469] Model parameter optimization (eps = 0.100000) [03:15:19] [worker #0] ML tree search #7, logLikelihood: -33007.962817 [03:15:19 -177496.853724] Initial branch length optimization [03:15:22 -145230.058135] Model parameter optimization (eps = 10.000000) [03:15:52 -144971.214668] AUTODETECT spr round 1 (radius: 5) [03:17:49 -90191.536664] AUTODETECT spr round 2 (radius: 10) [03:19:53 -63719.783047] AUTODETECT spr round 3 (radius: 15) [03:21:57 -52764.845638] AUTODETECT spr round 4 (radius: 20) [03:24:05 -48314.703091] AUTODETECT spr round 5 (radius: 25) [03:26:29 -45641.369938] SPR radius for FAST iterations: 25 (autodetect) [03:26:29 -45641.369938] Model parameter optimization (eps = 3.000000) [03:26:47 -45571.592063] FAST spr round 1 (radius: 25) [03:28:52 -34646.971731] FAST spr round 2 (radius: 25) [03:30:31 -33182.029850] FAST spr round 3 (radius: 25) [03:32:02 -33079.525573] FAST spr round 4 (radius: 25) [03:33:29 -33046.788265] FAST spr round 5 (radius: 25) [03:34:52 -33034.622291] FAST spr round 6 (radius: 25) [03:36:11 -33034.621623] Model parameter optimization (eps = 1.000000) [03:36:20 -33032.385060] SLOW spr round 1 (radius: 5) [03:37:51 -33024.829175] SLOW spr round 2 (radius: 5) [03:39:22 -33022.598861] SLOW spr round 3 (radius: 5) [03:40:51 -33022.341962] SLOW spr round 4 (radius: 5) [03:42:19 -33022.341824] SLOW spr round 5 (radius: 10) [03:43:55 -33019.978095] SLOW spr round 6 (radius: 5) [03:45:45 -33019.977939] SLOW spr round 7 (radius: 10) [03:47:29 -33017.235989] SLOW spr round 8 (radius: 5) [03:49:19 -33016.574901] SLOW spr round 9 (radius: 5) [03:50:58 -33016.574901] SLOW spr round 10 (radius: 10) [03:52:35 -33016.574883] SLOW spr round 11 (radius: 15) [03:54:45 -33016.552907] SLOW spr round 12 (radius: 20) [03:57:31 -33016.552882] SLOW spr round 13 (radius: 25) [04:00:56 -33012.073899] SLOW spr round 14 (radius: 5) [04:02:58 -33006.904650] SLOW spr round 15 (radius: 5) [04:04:46 -33006.903877] SLOW spr round 16 (radius: 10) [04:06:00] [worker #1] ML tree search #8, logLikelihood: -33013.341682 [04:06:28 -33006.903824] SLOW spr round 17 (radius: 15) [04:08:39 -33005.696231] SLOW spr round 18 (radius: 5) [04:10:35 -33005.682076] SLOW spr round 19 (radius: 10) [04:12:27 -33001.856178] SLOW spr round 20 (radius: 5) [04:14:15 -33001.213282] SLOW spr round 21 (radius: 5) [04:15:55 -33001.211653] SLOW spr round 22 (radius: 10) [04:17:33 -33001.211510] SLOW spr round 23 (radius: 15) [04:19:45 -33001.211495] SLOW spr round 24 (radius: 20) [04:22:29 -33001.211493] SLOW spr round 25 (radius: 25) [04:25:53 -33001.211493] Model parameter optimization (eps = 0.100000) [04:25:59] [worker #0] ML tree search #9, logLikelihood: -33001.008066 [04:25:59 -176889.548281] Initial branch length optimization [04:26:03 -144004.088977] Model parameter optimization (eps = 10.000000) [04:26:29 -143789.512163] AUTODETECT spr round 1 (radius: 5) [04:28:26 -91345.963109] AUTODETECT spr round 2 (radius: 10) [04:30:33 -62997.910087] AUTODETECT spr round 3 (radius: 15) [04:32:41 -53126.106516] AUTODETECT spr round 4 (radius: 20) [04:34:58 -45572.953989] AUTODETECT spr round 5 (radius: 25) [04:37:18 -42835.151069] SPR radius for FAST iterations: 25 (autodetect) [04:37:18 -42835.151069] Model parameter optimization (eps = 3.000000) [04:37:34 -42806.714056] FAST spr round 1 (radius: 25) [04:39:41 -34081.103566] FAST spr round 2 (radius: 25) [04:41:25 -33132.876985] FAST spr round 3 (radius: 25) [04:42:58 -33030.747041] FAST spr round 4 (radius: 25) [04:44:23 -33023.843368] FAST spr round 5 (radius: 25) [04:45:02] [worker #1] ML tree search #10, logLikelihood: -33049.051529 [04:45:43 -33023.836134] Model parameter optimization (eps = 1.000000) [04:45:55 -33018.384889] SLOW spr round 1 (radius: 5) [04:47:29 -33012.910310] SLOW spr round 2 (radius: 5) [04:49:03 -33011.815159] SLOW spr round 3 (radius: 5) [04:50:36 -33011.814951] SLOW spr round 4 (radius: 10) [04:52:17 -33011.146384] SLOW spr round 5 (radius: 5) [04:54:11 -33009.644546] SLOW spr round 6 (radius: 5) [04:55:55 -33009.287975] SLOW spr round 7 (radius: 5) [04:57:33 -33006.163739] SLOW spr round 8 (radius: 5) [04:59:08 -33006.162671] SLOW spr round 9 (radius: 10) [05:00:50 -33006.162600] SLOW spr round 10 (radius: 15) [05:03:03 -33002.951765] SLOW spr round 11 (radius: 5) [05:05:02 -33001.736279] SLOW spr round 12 (radius: 5) [05:06:47 -33001.736159] SLOW spr round 13 (radius: 10) [05:08:31 -32998.642379] SLOW spr round 14 (radius: 5) [05:10:22 -32998.640976] SLOW spr round 15 (radius: 10) [05:12:07 -32998.640878] SLOW spr round 16 (radius: 15) [05:14:13 -32998.640870] SLOW spr round 17 (radius: 20) [05:17:04 -32998.640870] SLOW spr round 18 (radius: 25) [05:20:39 -32998.640870] Model parameter optimization (eps = 0.100000) [05:20:46] [worker #0] ML tree search #11, logLikelihood: -32998.417451 [05:20:46 -178439.514283] Initial branch length optimization [05:20:49 -146178.609152] Model parameter optimization (eps = 10.000000) [05:21:15 -145989.803497] AUTODETECT spr round 1 (radius: 5) [05:23:12 -92953.604617] AUTODETECT spr round 2 (radius: 10) [05:25:17 -64369.105763] AUTODETECT spr round 3 (radius: 15) [05:27:22 -52337.023117] AUTODETECT spr round 4 (radius: 20) [05:29:45 -42183.600212] AUTODETECT spr round 5 (radius: 25) [05:32:16] [worker #1] ML tree search #12, logLikelihood: -33021.198212 [05:32:26 -40357.953190] SPR radius for FAST iterations: 25 (autodetect) [05:32:26 -40357.953190] Model parameter optimization (eps = 3.000000) [05:32:43 -40308.294810] FAST spr round 1 (radius: 25) [05:34:35 -33633.242787] FAST spr round 2 (radius: 25) [05:36:10 -33079.019234] FAST spr round 3 (radius: 25) [05:37:39 -33048.219881] FAST spr round 4 (radius: 25) [05:39:05 -33045.078729] FAST spr round 5 (radius: 25) [05:40:27 -33045.078376] Model parameter optimization (eps = 1.000000) [05:40:36 -33043.527644] SLOW spr round 1 (radius: 5) [05:42:10 -33028.611117] SLOW spr round 2 (radius: 5) [05:43:46 -33025.685925] SLOW spr round 3 (radius: 5) [05:45:20 -33025.512235] SLOW spr round 4 (radius: 5) [05:46:51 -33025.512230] SLOW spr round 5 (radius: 10) [05:48:28 -33025.512218] SLOW spr round 6 (radius: 15) [05:50:37 -33025.512218] SLOW spr round 7 (radius: 20) [05:53:23 -33025.512218] SLOW spr round 8 (radius: 25) [05:56:43 -33025.512218] Model parameter optimization (eps = 0.100000) [05:56:54] [worker #0] ML tree search #13, logLikelihood: -33025.484664 [05:56:54 -177892.879235] Initial branch length optimization [05:56:57 -144454.468789] Model parameter optimization (eps = 10.000000) [05:57:27 -144196.699503] AUTODETECT spr round 1 (radius: 5) [05:59:27 -89231.284481] AUTODETECT spr round 2 (radius: 10) [06:01:32 -61757.511475] AUTODETECT spr round 3 (radius: 15) [06:03:37 -52277.942777] AUTODETECT spr round 4 (radius: 20) [06:05:57 -46397.731687] AUTODETECT spr round 5 (radius: 25) [06:08:38 -44446.373670] SPR radius for FAST iterations: 25 (autodetect) [06:08:38 -44446.373670] Model parameter optimization (eps = 3.000000) [06:08:56 -44393.457723] FAST spr round 1 (radius: 25) [06:10:57 -34900.229744] FAST spr round 2 (radius: 25) [06:12:01] [worker #1] ML tree search #14, logLikelihood: -33018.817415 [06:12:36 -33179.779308] FAST spr round 3 (radius: 25) [06:14:06 -33051.183000] FAST spr round 4 (radius: 25) [06:15:33 -33036.993113] FAST spr round 5 (radius: 25) [06:16:54 -33033.380817] FAST spr round 6 (radius: 25) [06:18:14 -33031.158249] FAST spr round 7 (radius: 25) [06:19:34 -33030.686425] FAST spr round 8 (radius: 25) [06:20:54 -33030.686290] Model parameter optimization (eps = 1.000000) [06:21:01 -33028.749261] SLOW spr round 1 (radius: 5) [06:22:33 -33017.601732] SLOW spr round 2 (radius: 5) [06:24:05 -33016.787442] SLOW spr round 3 (radius: 5) [06:25:38 -33016.787034] SLOW spr round 4 (radius: 10) [06:27:17 -33016.786821] SLOW spr round 5 (radius: 15) [06:29:29 -33016.786744] SLOW spr round 6 (radius: 20) [06:32:21 -33016.786697] SLOW spr round 7 (radius: 25) [06:35:47 -33016.786697] Model parameter optimization (eps = 0.100000) [06:35:50] [worker #0] ML tree search #15, logLikelihood: -33016.773661 [06:35:50 -179636.395461] Initial branch length optimization [06:35:53 -145968.257891] Model parameter optimization (eps = 10.000000) [06:36:24 -145788.437854] AUTODETECT spr round 1 (radius: 5) [06:38:24 -93243.953977] AUTODETECT spr round 2 (radius: 10) [06:40:33 -66270.067604] AUTODETECT spr round 3 (radius: 15) [06:42:36 -54208.488335] AUTODETECT spr round 4 (radius: 20) [06:44:58 -45267.640304] AUTODETECT spr round 5 (radius: 25) [06:47:39 -40636.246556] SPR radius for FAST iterations: 25 (autodetect) [06:47:39 -40636.246556] Model parameter optimization (eps = 3.000000) [06:47:56 -40557.345929] FAST spr round 1 (radius: 25) [06:49:56 -33646.020363] FAST spr round 2 (radius: 25) [06:51:28] [worker #1] ML tree search #16, logLikelihood: -33037.510722 [06:51:34 -33078.939567] FAST spr round 3 (radius: 25) [06:53:03 -33048.964945] FAST spr round 4 (radius: 25) [06:54:26 -33041.702786] FAST spr round 5 (radius: 25) [06:55:48 -33039.501576] FAST spr round 6 (radius: 25) [06:57:10 -33038.574667] FAST spr round 7 (radius: 25) [06:58:31 -33038.574665] Model parameter optimization (eps = 1.000000) [06:58:40 -33035.033125] SLOW spr round 1 (radius: 5) [07:00:14 -33022.430643] SLOW spr round 2 (radius: 5) [07:01:48 -33019.954352] SLOW spr round 3 (radius: 5) [07:03:18 -33019.954205] SLOW spr round 4 (radius: 10) [07:04:56 -33013.465638] SLOW spr round 5 (radius: 5) [07:06:49 -33005.703442] SLOW spr round 6 (radius: 5) [07:08:31 -33005.477801] SLOW spr round 7 (radius: 5) [07:10:05 -33005.477606] SLOW spr round 8 (radius: 10) [07:11:44 -33005.477596] SLOW spr round 9 (radius: 15) [07:13:55 -33005.393490] SLOW spr round 10 (radius: 20) [07:16:51 -33005.393490] SLOW spr round 11 (radius: 25) [07:20:30 -33005.393490] Model parameter optimization (eps = 0.100000) [07:20:35] [worker #0] ML tree search #17, logLikelihood: -33005.375110 [07:20:35 -176389.892613] Initial branch length optimization [07:20:38 -144240.622436] Model parameter optimization (eps = 10.000000) [07:21:04 -143983.559930] AUTODETECT spr round 1 (radius: 5) [07:23:00 -88916.978082] AUTODETECT spr round 2 (radius: 10) [07:25:01 -62177.038684] AUTODETECT spr round 3 (radius: 15) [07:27:10 -53082.020096] AUTODETECT spr round 4 (radius: 20) [07:29:44 -44686.792265] AUTODETECT spr round 5 (radius: 25) [07:32:07 -42280.959731] SPR radius for FAST iterations: 25 (autodetect) [07:32:07 -42280.959731] Model parameter optimization (eps = 3.000000) [07:32:27 -42237.002004] FAST spr round 1 (radius: 25) [07:34:24 -34816.417994] FAST spr round 2 (radius: 25) [07:35:59 -33655.263319] FAST spr round 3 (radius: 25) [07:37:24 -33047.164747] FAST spr round 4 (radius: 25) [07:38:49 -33029.519661] FAST spr round 5 (radius: 25) [07:40:10 -33027.968310] FAST spr round 6 (radius: 25) [07:41:30 -33027.968141] Model parameter optimization (eps = 1.000000) [07:41:41 -33025.318906] SLOW spr round 1 (radius: 5) [07:43:13 -33016.429236] SLOW spr round 2 (radius: 5) [07:44:46 -33016.191060] SLOW spr round 3 (radius: 5) [07:45:31] [worker #1] ML tree search #18, logLikelihood: -32998.855392 [07:46:16 -33016.183396] SLOW spr round 4 (radius: 10) [07:47:51 -33016.183288] SLOW spr round 5 (radius: 15) [07:50:01 -33016.183286] SLOW spr round 6 (radius: 20) [07:52:55 -33016.183286] SLOW spr round 7 (radius: 25) [07:56:35 -33016.183286] Model parameter optimization (eps = 0.100000) [07:56:39] [worker #0] ML tree search #19, logLikelihood: -33016.174167 [08:26:29] [worker #1] ML tree search #20, logLikelihood: -33006.464585 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.200129,0.311314) (0.186921,0.523680) (0.358689,1.034078) (0.254261,1.844160) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -32998.417451 AIC score: 70006.834902 / AICc score: 8114066.834902 / BIC score: 75328.025404 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=105). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96MP8/3_mltree/Q96MP8.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96MP8/3_mltree/Q96MP8.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96MP8/3_mltree/Q96MP8.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96MP8/3_mltree/Q96MP8.raxml.log Analysis started: 02-Jul-2021 09:20:30 / finished: 02-Jul-2021 17:46:59 Elapsed time: 30389.681 seconds Consumed energy: 2561.861 Wh (= 13 km in an electric car, or 64 km with an e-scooter!)