RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 01-Jul-2021 07:50:11 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96G42/2_msa/Q96G42_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96G42/3_mltree/Q96G42 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96G42/2_msa/Q96G42_trimmed_msa.fasta
[00:00:00] Loaded alignment with 999 taxa and 69 sites

WARNING: Sequences tr_B4QWC0_B4QWC0_DROSI_7240 and tr_B4IBM4_B4IBM4_DROSE_7238 are exactly identical!
WARNING: Sequences tr_E1ZV79_E1ZV79_CAMFO_104421 and tr_A0A026W6H0_A0A026W6H0_OOCBI_2015173 are exactly identical!
WARNING: Sequences tr_E2A5N0_E2A5N0_CAMFO_104421 and tr_F4W735_F4W735_ACREC_103372 are exactly identical!
WARNING: Sequences tr_E2A5N0_E2A5N0_CAMFO_104421 and tr_A0A151X803_A0A151X803_9HYME_64791 are exactly identical!
WARNING: Sequences tr_E2A5N0_E2A5N0_CAMFO_104421 and tr_A0A195DB30_A0A195DB30_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A0G2KCC7_A0A0G2KCC7_DANRE_7955 and tr_A0A2R8QFH5_A0A2R8QFH5_DANRE_7955 are exactly identical!
WARNING: Sequences tr_A0A1D5PQZ9_A0A1D5PQZ9_CHICK_9031 and sp_Q5F3N5_KLH14_CHICK_9031 are exactly identical!
WARNING: Sequences tr_A0A1D5PQZ9_A0A1D5PQZ9_CHICK_9031 and tr_G1NDT7_G1NDT7_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5PQZ9_A0A1D5PQZ9_CHICK_9031 and tr_K7FD76_K7FD76_PELSI_13735 are exactly identical!
WARNING: Sequences tr_A0A1D5PQZ9_A0A1D5PQZ9_CHICK_9031 and tr_H0ZKI6_H0ZKI6_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_A0A1D5PQZ9_A0A1D5PQZ9_CHICK_9031 and tr_U3JTN1_U3JTN1_FICAL_59894 are exactly identical!
WARNING: Sequences tr_A0A1D5PQZ9_A0A1D5PQZ9_CHICK_9031 and tr_U3IG47_U3IG47_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A1D5PQZ9_A0A1D5PQZ9_CHICK_9031 and tr_A0A151MNM8_A0A151MNM8_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_A0A1D5PQZ9_A0A1D5PQZ9_CHICK_9031 and tr_A0A3Q0H3C3_A0A3Q0H3C3_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_G1NAM4_G1NAM4_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_H0ZH59_H0ZH59_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_U3KFW0_U3KFW0_FICAL_59894 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_U3J4Y1_U3J4Y1_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_A0A0Q3PBH4_A0A0Q3PBH4_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_A0A091IPP9_A0A091IPP9_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_A0A091VIM6_A0A091VIM6_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_A0A087RC02_A0A087RC02_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_A0A091WBA9_A0A091WBA9_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_A0A0A0AC46_A0A0A0AC46_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_A0A2I0M9L9_A0A2I0M9L9_COLLI_8932 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_A0A091IAP9_A0A091IAP9_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_A0A1V4K933_A0A1V4K933_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_A0A218UW09_A0A218UW09_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_A0A226NLJ7_A0A226NLJ7_CALSU_9009 are exactly identical!
WARNING: Sequences tr_A0A1D5PX74_A0A1D5PX74_CHICK_9031 and tr_A0A226PQ81_A0A226PQ81_COLVI_9014 are exactly identical!
WARNING: Sequences tr_E1BTG0_E1BTG0_CHICK_9031 and tr_G1NMC1_G1NMC1_MELGA_9103 are exactly identical!
WARNING: Sequences tr_E1BTG0_E1BTG0_CHICK_9031 and tr_A0A226N789_A0A226N789_CALSU_9009 are exactly identical!
WARNING: Sequences tr_E1BTG0_E1BTG0_CHICK_9031 and tr_A0A226PAF2_A0A226PAF2_COLVI_9014 are exactly identical!
WARNING: Sequences tr_F1NH29_F1NH29_CHICK_9031 and tr_G1N4U1_G1N4U1_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1NQU1_F1NQU1_CHICK_9031 and tr_G1NMF2_G1NMF2_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1NQU1_F1NQU1_CHICK_9031 and tr_U3J284_U3J284_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_F1NQU1_F1NQU1_CHICK_9031 and tr_A0A226MSD4_A0A226MSD4_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F1NQU1_F1NQU1_CHICK_9031 and tr_A0A226NTG8_A0A226NTG8_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A0G2JGN5_A0A0G2JGN5_MOUSE_10090 and tr_F7HDS8_F7HDS8_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A0G2JGN5_A0A0G2JGN5_MOUSE_10090 and tr_A0A096N212_A0A096N212_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A0G2JGN5_A0A0G2JGN5_MOUSE_10090 and tr_A0A3Q0E2R8_A0A3Q0E2R8_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_A0A0G2JGN5_A0A0G2JGN5_MOUSE_10090 and tr_A0A2K5KKZ9_A0A2K5KKZ9_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q3UQV5_KBTB8_MOUSE_10090 and tr_G1R7K2_G1R7K2_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q3UQV5_KBTB8_MOUSE_10090 and tr_G3GS37_G3GS37_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_Q3UQV5_KBTB8_MOUSE_10090 and tr_H2PAB4_H2PAB4_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q3UQV5_KBTB8_MOUSE_10090 and sp_B1H285_KBTB8_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q3UQV5_KBTB8_MOUSE_10090 and tr_A0A384AYV2_A0A384AYV2_BALAS_310752 are exactly identical!
WARNING: Sequences sp_Q69ZK5_KLH14_MOUSE_10090 and tr_D3ZYQ7_D3ZYQ7_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q69ZK5_KLH14_MOUSE_10090 and tr_I3MR83_I3MR83_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q69ZK5_KLH14_MOUSE_10090 and tr_H0UUQ8_H0UUQ8_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_Q69ZK5_KLH14_MOUSE_10090 and tr_A0A1S3F2E0_A0A1S3F2E0_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_Q8BWA5_KLH31_MOUSE_10090 and tr_D3ZLT6_D3ZLT6_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q8BWA5_KLH31_MOUSE_10090 and tr_A0A1U8BZG8_A0A1U8BZG8_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q8R124_KLH36_MOUSE_10090 and tr_G3GRX3_G3GRX3_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_Q8R124_KLH36_MOUSE_10090 and sp_Q66HD2_KLH36_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q8R124_KLH36_MOUSE_10090 and tr_A0A1U8C604_A0A1U8C604_MESAU_10036 are exactly identical!
WARNING: Sequences tr_M3XM32_M3XM32_MUSPF_9669 and tr_A0A2Y9K170_A0A2Y9K170_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_G1R3I3_G1R3I3_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_G1NVQ8_G1NVQ8_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_G3SAV6_G3SAV6_GORGO_9595 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_G1SVG1_G1SVG1_RABIT_9986 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_E2RAL2_E2RAL2_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_H2R076_H2R076_PANTR_9598 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_F6QL48_F6QL48_HORSE_9796 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_W5P7M8_W5P7M8_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_H0XCW7_H0XCW7_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and sp_Q9P2G3_KLH14_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_G3THC5_G3THC5_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_G3W8P7_G3W8P7_SARHA_9305 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A2R8N2R8_A0A2R8N2R8_CALJA_9483 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_F1SAK5_F1SAK5_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_E1BPK1_E1BPK1_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_L5K265_L5K265_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A096MW19_A0A096MW19_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A0D9RZ61_A0A0D9RZ61_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A1S3W8K1_A0A1S3W8K1_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A2K5KHE5_A0A2K5KHE5_CERAT_9531 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A2K6DH29_A0A2K6DH29_MACNE_9545 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A2K5ZLG7_A0A2K5ZLG7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A2R9CD63_A0A2R9CD63_PANPA_9597 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A2U3WU86_A0A2U3WU86_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A2U3XSI1_A0A2U3XSI1_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A2Y9RXZ1_A0A2Y9RXZ1_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A2Y9IVD2_A0A2Y9IVD2_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Y6S8_M3Y6S8_MUSPF_9669 and tr_A0A384C9J8_A0A384C9J8_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_G1P284_G1P284_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2I2YKJ8_A0A2I2YKJ8_GORGO_9595 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_H2NRN3_H2NRN3_PONAB_9601 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_F1PEV6_F1PEV6_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_H2QBM6_H2QBM6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_W5PMT4_W5PMT4_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_H0X0F3_H0X0F3_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_F6WWV1_F6WWV1_MACMU_9544 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A287A862_A0A287A862_PIG_9823 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_G1MJ13_G1MJ13_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_G7PZW0_G7PZW0_MACFA_9541 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_E1BDD0_E1BDD0_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and sp_Q3B7M1_KLH36_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A096NPH1_A0A096NPH1_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A0D9S1X1_A0A0D9S1X1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A1S3A2N3_A0A1S3A2N3_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2K5M7F8_A0A2K5M7F8_CERAT_9531 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2K6BF68_A0A2K6BF68_MACNE_9545 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2K5YUL8_A0A2K5YUL8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2R9BDI1_A0A2R9BDI1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2U4BR90_A0A2U4BR90_TURTR_9739 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2U4BRC2_A0A2U4BRC2_TURTR_9739 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2U4BRK5_A0A2U4BRK5_TURTR_9739 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2U3VC78_A0A2U3VC78_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2U3Y807_A0A2U3Y807_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2Y9K249_A0A2Y9K249_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2Y9NXH8_A0A2Y9NXH8_DELLE_9749 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A2Y9EWD5_A0A2Y9EWD5_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_M3YBN8_M3YBN8_MUSPF_9669 and tr_A0A383ZCP4_A0A383ZCP4_BALAS_310752 are exactly identical!
WARNING: Sequences tr_M3YZT4_M3YZT4_MUSPF_9669 and tr_F6UYF2_F6UYF2_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3YZT4_M3YZT4_MUSPF_9669 and tr_G1LBI8_G1LBI8_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3YZT4_M3YZT4_MUSPF_9669 and tr_M3WG05_M3WG05_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3YZT4_M3YZT4_MUSPF_9669 and tr_A0A2U3WVC9_A0A2U3WVC9_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3YZT4_M3YZT4_MUSPF_9669 and tr_A0A2U3XLL3_A0A2U3XLL3_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3YZT4_M3YZT4_MUSPF_9669 and tr_A0A2Y9J0F6_A0A2Y9J0F6_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YZT4_M3YZT4_MUSPF_9669 and tr_A0A384D2P4_A0A384D2P4_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A0B4KEU3_A0A0B4KEU3_DROME_7227 and tr_B4HP23_B4HP23_DROSE_7238 are exactly identical!
WARNING: Sequences tr_A0A0B4KEU3_A0A0B4KEU3_DROME_7227 and tr_Q292H5_Q292H5_DROPS_46245 are exactly identical!
WARNING: Sequences tr_A0A0B4KEU3_A0A0B4KEU3_DROME_7227 and tr_B4MK18_B4MK18_DROWI_7260 are exactly identical!
WARNING: Sequences tr_A0A0B4KEU3_A0A0B4KEU3_DROME_7227 and tr_B3MI14_B3MI14_DROAN_7217 are exactly identical!
WARNING: Sequences tr_A0A0B4KEU3_A0A0B4KEU3_DROME_7227 and tr_B4GDJ0_B4GDJ0_DROPE_7234 are exactly identical!
WARNING: Sequences tr_H2LSI2_H2LSI2_ORYLA_8090 and tr_A0A3B5KLU3_A0A3B5KLU3_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_H2LSI2_H2LSI2_ORYLA_8090 and tr_H3CXG4_H3CXG4_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H2LSI2_H2LSI2_ORYLA_8090 and tr_A0A1S3L0L0_A0A1S3L0L0_SALSA_8030 are exactly identical!
WARNING: Sequences tr_H2LSI2_H2LSI2_ORYLA_8090 and tr_A0A1S3RJ19_A0A1S3RJ19_SALSA_8030 are exactly identical!
WARNING: Sequences tr_H2LSI2_H2LSI2_ORYLA_8090 and tr_A0A060W926_A0A060W926_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_H2LSI2_H2LSI2_ORYLA_8090 and tr_A0A060XCF7_A0A060XCF7_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_B4J4J2_B4J4J2_DROGR_7222 and tr_B4LQ85_B4LQ85_DROVI_7244 are exactly identical!
WARNING: Sequences tr_A0A2I3HD76_A0A2I3HD76_NOMLE_61853 and tr_H2PPD6_H2PPD6_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A2I3HD76_A0A2I3HD76_NOMLE_61853 and tr_H2R9W6_H2R9W6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3HD76_A0A2I3HD76_NOMLE_61853 and sp_O94819_KBTBB_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3HD76_A0A2I3HD76_NOMLE_61853 and tr_A0A1D5Q3F5_A0A1D5Q3F5_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A2I3HD76_A0A2I3HD76_NOMLE_61853 and tr_A0A2I3MDD5_A0A2I3MDD5_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A2I3HD76_A0A2I3HD76_NOMLE_61853 and tr_A0A0D9SB14_A0A0D9SB14_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I3HD76_A0A2I3HD76_NOMLE_61853 and tr_A0A2K5KWQ1_A0A2K5KWQ1_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3HD76_A0A2I3HD76_NOMLE_61853 and tr_A0A2K6CWD4_A0A2K6CWD4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_G1NZU1_G1NZU1_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_A0A2I2YF66_A0A2I2YF66_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_H2NGV9_H2NGV9_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_F1Q383_F1Q383_CANLF_9615 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_H2R7A4_H2R7A4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_F7BD32_F7BD32_HORSE_9796 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_I3N085_I3N085_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and sp_Q9P2K6_KLH42_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_U3D2L1_U3D2L1_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_G1LYI2_G1LYI2_AILME_9646 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_L5KK47_L5KK47_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_A0A337S6H6_A0A337S6H6_FELCA_9685 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_A0A3Q0DWI3_A0A3Q0DWI3_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_A0A2R9C764_A0A2R9C764_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_A0A2Y9KXG9_A0A2Y9KXG9_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G1R0M3_G1R0M3_NOMLE_61853 and tr_A0A384BHG7_A0A384BHG7_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G1RI91_G1RI91_NOMLE_61853 and tr_G3RE91_G3RE91_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1RI91_G1RI91_NOMLE_61853 and tr_H2NRL2_H2NRL2_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1RI91_G1RI91_NOMLE_61853 and tr_H2RA10_H2RA10_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1RI91_G1RI91_NOMLE_61853 and tr_F6T7B9_F6T7B9_HORSE_9796 are exactly identical!
WARNING: Sequences tr_G1RI91_G1RI91_NOMLE_61853 and tr_D3ZRI9_D3ZRI9_RAT_10116 are exactly identical!
WARNING: Sequences tr_G1RI91_G1RI91_NOMLE_61853 and tr_H0X712_H0X712_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G1RI91_G1RI91_NOMLE_61853 and sp_Q9H2C0_GAN_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1RI91_G1RI91_NOMLE_61853 and tr_F6V530_F6V530_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1RI91_G1RI91_NOMLE_61853 and tr_A0A0D9S122_A0A0D9S122_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1RI91_G1RI91_NOMLE_61853 and tr_A0A2K5MS02_A0A2K5MS02_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1RI91_G1RI91_NOMLE_61853 and tr_A0A2K6DU00_A0A2K6DU00_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1RI91_G1RI91_NOMLE_61853 and tr_A0A2R9BYJ1_A0A2R9BYJ1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and sp_Q8NFY9_KBTB8_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_G5AXP5_G5AXP5_HETGA_10181 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_A0A2R8MFH9_A0A2R8MFH9_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_F1SFR7_F1SFR7_PIG_9823 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_G7NZ97_G7NZ97_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_L5K7S4_L5K7S4_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_A0A096NDA8_A0A096NDA8_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_A0A0D9RH21_A0A0D9RH21_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_A0A1S3EPY8_A0A1S3EPY8_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_A0A1U7UQQ3_A0A1U7UQQ3_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_A0A2K5P333_A0A2K5P333_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_A0A2K6DS95_A0A2K6DS95_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_A0A2K6A1S4_A0A2K6A1S4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_A0A2U3V4K5_A0A2U3V4K5_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_A0A2Y9NA50_A0A2Y9NA50_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G1PFT2_G1PFT2_MYOLU_59463 and tr_A0A2Y9EGF3_A0A2Y9EGF3_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G1PN11_G1PN11_MYOLU_59463 and tr_A0A2U4BJP5_A0A2U4BJP5_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G1PN11_G1PN11_MYOLU_59463 and tr_A0A2Y9NPP8_A0A2Y9NPP8_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G1PRL8_G1PRL8_MYOLU_59463 and sp_Q684M4_KEAP1_PIG_9823 are exactly identical!
WARNING: Sequences tr_G1PRL8_G1PRL8_MYOLU_59463 and tr_G1LY84_G1LY84_AILME_9646 are exactly identical!
WARNING: Sequences tr_G1PRL8_G1PRL8_MYOLU_59463 and tr_A0A1U7T5H7_A0A1U7T5H7_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1PRL8_G1PRL8_MYOLU_59463 and tr_A0A2U3YBM1_A0A2U3YBM1_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_G1PRL8_G1PRL8_MYOLU_59463 and tr_A0A384DHP8_A0A384DHP8_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G3HKR5_G3HKR5_CRIGR_10029 and tr_A0A1U8BZ86_A0A1U8BZ86_MESAU_10036 are exactly identical!
WARNING: Sequences tr_D8R4X1_D8R4X1_SELML_88036 and tr_D8S423_D8S423_SELML_88036 are exactly identical!
WARNING: Sequences tr_A0A2I2Z0C9_A0A2I2Z0C9_GORGO_9595 and tr_H2N8U9_H2N8U9_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A2I2Z0C9_A0A2I2Z0C9_GORGO_9595 and sp_Q5R866_KLD7A_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3QK36_G3QK36_GORGO_9595 and tr_A0A2I3RR06_A0A2I3RR06_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QK36_G3QK36_GORGO_9595 and sp_Q96G42_KLD7B_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QK36_G3QK36_GORGO_9595 and tr_G7PG75_G7PG75_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G3QK36_G3QK36_GORGO_9595 and tr_A0A0D9SD62_A0A0D9SD62_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G3QK36_G3QK36_GORGO_9595 and tr_A0A2R8Z6X3_A0A2R8Z6X3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3QM91_G3QM91_GORGO_9595 and tr_H2QMI0_H2QMI0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QM91_G3QM91_GORGO_9595 and tr_A0A2R8ZX93_A0A2R8ZX93_PANPA_9597 are exactly identical!
WARNING: Sequences tr_C3Y8R1_C3Y8R1_BRAFL_7739 and tr_C3YC40_C3YC40_BRAFL_7739 are exactly identical!
WARNING: Sequences tr_G1TM03_G1TM03_RABIT_9986 and tr_A0A286XMD4_A0A286XMD4_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_E2R3Q4_E2R3Q4_CANLF_9615 and tr_W5PCZ1_W5PCZ1_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_E2R3Q4_E2R3Q4_CANLF_9615 and tr_G1MDQ5_G1MDQ5_AILME_9646 are exactly identical!
WARNING: Sequences tr_E2R3Q4_E2R3Q4_CANLF_9615 and tr_M3W073_M3W073_FELCA_9685 are exactly identical!
WARNING: Sequences tr_E2R3Q4_E2R3Q4_CANLF_9615 and tr_A0A2Y9KG78_A0A2Y9KG78_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_F1PDU2_F1PDU2_CANLF_9615 and tr_A0A2U4B5X7_A0A2U4B5X7_TURTR_9739 are exactly identical!
WARNING: Sequences tr_F1PDU2_F1PDU2_CANLF_9615 and tr_A0A2Y9M0V4_A0A2Y9M0V4_DELLE_9749 are exactly identical!
WARNING: Sequences tr_F1PDU2_F1PDU2_CANLF_9615 and tr_A0A2Y9TKZ1_A0A2Y9TKZ1_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_F1PDU2_F1PDU2_CANLF_9615 and tr_A0A383Z1K8_A0A383Z1K8_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A2I3SH64_A0A2I3SH64_PANTR_9598 and tr_A0A2R8ZHD3_A0A2R8ZHD3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2QMW8_H2QMW8_PANTR_9598 and tr_A0A2R9C7L2_A0A2R9C7L2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F6QQ04_F6QQ04_ORNAN_9258 and tr_F6QQ17_F6QQ17_ORNAN_9258 are exactly identical!
WARNING: Sequences tr_F7F5Y0_F7F5Y0_MONDO_13616 and tr_G3W0G5_G3W0G5_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F7GIN1_F7GIN1_MONDO_13616 and tr_G3WKQ0_G3WKQ0_SARHA_9305 are exactly identical!
WARNING: Sequences tr_B0W1R9_B0W1R9_CULQU_7176 and tr_Q16HP9_Q16HP9_AEDAE_7159 are exactly identical!
WARNING: Sequences tr_B0W1R9_B0W1R9_CULQU_7176 and tr_Q16MJ3_Q16MJ3_AEDAE_7159 are exactly identical!
WARNING: Sequences tr_W5NVG1_W5NVG1_SHEEP_9940 and tr_E1BIL6_E1BIL6_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5PLA2_W5PLA2_SHEEP_9940 and tr_F1N465_F1N465_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5Q498_W5Q498_SHEEP_9940 and tr_A7MBG4_A7MBG4_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A3B5PW16_A0A3B5PW16_XIPMA_8083 and tr_A0A087XN12_A0A087XN12_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5Q371_A0A3B5Q371_XIPMA_8083 and tr_I3JCP1_I3JCP1_ORENI_8128 are exactly identical!
WARNING: Sequences tr_A0A3B5Q371_A0A3B5Q371_XIPMA_8083 and tr_A0A2I4B2U5_A0A2I4B2U5_9TELE_52670 are exactly identical!
WARNING: Sequences tr_M3ZFQ8_M3ZFQ8_XIPMA_8083 and tr_A0A087XFB5_A0A087XFB5_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M4AXH0_M4AXH0_XIPMA_8083 and tr_I3JT30_I3JT30_ORENI_8128 are exactly identical!
WARNING: Sequences tr_M4AXH0_M4AXH0_XIPMA_8083 and tr_H2T8E9_H2T8E9_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_M4AXH0_M4AXH0_XIPMA_8083 and tr_H3CSW6_H3CSW6_TETNG_99883 are exactly identical!
WARNING: Sequences tr_M4AXH0_M4AXH0_XIPMA_8083 and tr_A0A087Y9E5_A0A087Y9E5_POEFO_48698 are exactly identical!
WARNING: Sequences tr_H2UW71_H2UW71_TAKRU_31033 and tr_H3DKU6_H3DKU6_TETNG_99883 are exactly identical!
WARNING: Sequences tr_A0A286Y365_A0A286Y365_CAVPO_10141 and tr_G5BCW3_G5BCW3_HETGA_10181 are exactly identical!
WARNING: Sequences tr_A0A286Y365_A0A286Y365_CAVPO_10141 and tr_A0A091DTW5_A0A091DTW5_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_A0A286Y5L8_A0A286Y5L8_CAVPO_10141 and tr_A0A1S3GMD9_A0A1S3GMD9_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_A6NCF5_KLH33_HUMAN_9606 and tr_A0A2R9BDM0_A0A2R9BDM0_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A0K0JLV4_A0A0K0JLV4_BRUMA_6279 and tr_A0A0N4TVW7_A0A0N4TVW7_BRUPA_6280 are exactly identical!
WARNING: Sequences tr_A0A0K0JLV4_A0A0K0JLV4_BRUMA_6279 and tr_A0A1I7VQV7_A0A1I7VQV7_LOALO_7209 are exactly identical!
WARNING: Sequences tr_F6QK71_F6QK71_MACMU_9544 and tr_G7Q2C7_G7Q2C7_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6QK71_F6QK71_MACMU_9544 and tr_A0A096NB55_A0A096NB55_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6QK71_F6QK71_MACMU_9544 and tr_A0A0D9SDU8_A0A0D9SDU8_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F6QK71_F6QK71_MACMU_9544 and tr_A0A2K5KTJ2_A0A2K5KTJ2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6QK71_F6QK71_MACMU_9544 and tr_A0A2K5XTH5_A0A2K5XTH5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7DXU8_F7DXU8_MACMU_9544 and tr_G7PHJ2_G7PHJ2_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7DXU8_F7DXU8_MACMU_9544 and tr_A0A096NGJ6_A0A096NGJ6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7DXU8_F7DXU8_MACMU_9544 and tr_A0A2K5LTS0_A0A2K5LTS0_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7DXU8_F7DXU8_MACMU_9544 and tr_A0A2K6DVI2_A0A2K6DVI2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7DXU8_F7DXU8_MACMU_9544 and tr_A0A2K5ZE46_A0A2K5ZE46_MANLE_9568 are exactly identical!
WARNING: Sequences tr_Q7Q1T2_Q7Q1T2_ANOGA_7165 and tr_A0A084WFV3_A0A084WFV3_ANOSI_74873 are exactly identical!
WARNING: Sequences tr_G3TAQ3_G3TAQ3_LOXAF_9785 and tr_A0A2Y9DN49_A0A2Y9DN49_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_G3TCF3_G3TCF3_LOXAF_9785 and tr_A0A2Y9DN64_A0A2Y9DN64_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_H0Z1D8_H0Z1D8_TAEGU_59729 and tr_U3JW26_U3JW26_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0Z1D8_H0Z1D8_TAEGU_59729 and tr_A0A091F2C2_A0A091F2C2_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0Z1D8_H0Z1D8_TAEGU_59729 and tr_A0A093PRU6_A0A093PRU6_9PASS_328815 are exactly identical!
WARNING: Sequences tr_H0Z1D8_H0Z1D8_TAEGU_59729 and tr_A0A218V805_A0A218V805_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H0ZRJ1_H0ZRJ1_TAEGU_59729 and tr_A0A091F044_A0A091F044_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0ZRJ1_H0ZRJ1_TAEGU_59729 and tr_A0A093S786_A0A093S786_9PASS_328815 are exactly identical!
WARNING: Sequences tr_H0ZRJ1_H0ZRJ1_TAEGU_59729 and tr_A0A218VCU7_A0A218VCU7_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H0ZRR2_H0ZRR2_TAEGU_59729 and tr_U3JGX5_U3JGX5_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0ZRR2_H0ZRR2_TAEGU_59729 and tr_A0A0Q3U348_A0A0Q3U348_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_H0ZRR2_H0ZRR2_TAEGU_59729 and tr_A0A093QRB3_A0A093QRB3_9PASS_328815 are exactly identical!
WARNING: Sequences tr_H0ZRR2_H0ZRR2_TAEGU_59729 and tr_A0A087RKF3_A0A087RKF3_APTFO_9233 are exactly identical!
WARNING: Sequences tr_H0ZRR2_H0ZRR2_TAEGU_59729 and tr_A0A093HLL6_A0A093HLL6_STRCA_441894 are exactly identical!
WARNING: Sequences tr_H0ZRR2_H0ZRR2_TAEGU_59729 and tr_A0A091FGT9_A0A091FGT9_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A1B8XYK4_A0A1B8XYK4_XENTR_8364 and tr_F6RGI8_F6RGI8_XENTR_8364 are exactly identical!
WARNING: Sequences tr_F7ETE8_F7ETE8_XENTR_8364 and tr_A0A1L8FYW7_A0A1L8FYW7_XENLA_8355 are exactly identical!
WARNING: Sequences tr_F1RZV8_F1RZV8_PIG_9823 and tr_A0A2U3V3U0_A0A2U3V3U0_TURTR_9739 are exactly identical!
WARNING: Sequences tr_F1RZV8_F1RZV8_PIG_9823 and tr_A0A2Y9ESL3_A0A2Y9ESL3_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_D2HKW6_D2HKW6_AILME_9646 and tr_A0A2U3WNS1_A0A2U3WNS1_ODORO_9708 are exactly identical!
WARNING: Sequences tr_D2HKW6_D2HKW6_AILME_9646 and tr_A0A2U3YZQ0_A0A2U3YZQ0_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_G1L813_G1L813_AILME_9646 and tr_A0A2U3WLA3_A0A2U3WLA3_ODORO_9708 are exactly identical!
WARNING: Sequences tr_G1L813_G1L813_AILME_9646 and tr_A0A384D2A1_A0A384D2A1_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G1L813_G1L813_AILME_9646 and tr_A0A384APS5_A0A384APS5_BALAS_310752 are exactly identical!
WARNING: Sequences tr_B3RNX3_B3RNX3_TRIAD_10228 and tr_A0A369S9A9_A0A369S9A9_9METZ_287889 are exactly identical!
WARNING: Sequences tr_B3RZB9_B3RZB9_TRIAD_10228 and tr_A0A369S660_A0A369S660_9METZ_287889 are exactly identical!
WARNING: Sequences tr_B3S8H7_B3S8H7_TRIAD_10228 and tr_A0A369S091_A0A369S091_9METZ_287889 are exactly identical!
WARNING: Sequences tr_G7NUR9_G7NUR9_MACFA_9541 and tr_A0A0D9S929_A0A0D9S929_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G7NUR9_G7NUR9_MACFA_9541 and tr_A0A2K5KQ57_A0A2K5KQ57_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G7NUR9_G7NUR9_MACFA_9541 and tr_A0A2K6DTD3_A0A2K6DTD3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G8F5Q1_G8F5Q1_MACFA_9541 and tr_A0A096NNK4_A0A096NNK4_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G8F5Q1_G8F5Q1_MACFA_9541 and tr_A0A2K5N368_A0A2K5N368_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G8F5Q1_G8F5Q1_MACFA_9541 and tr_A0A2K6DAN9_A0A2K6DAN9_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G8F5Q1_G8F5Q1_MACFA_9541 and tr_A0A2K6A8F6_A0A2K6A8F6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_E1BF13_E1BF13_BOVIN_9913 and tr_A0A2U4A887_A0A2U4A887_TURTR_9739 are exactly identical!
WARNING: Sequences tr_E1BF13_E1BF13_BOVIN_9913 and tr_A0A2U3WXJ7_A0A2U3WXJ7_ODORO_9708 are exactly identical!
WARNING: Sequences tr_E1BF13_E1BF13_BOVIN_9913 and tr_A0A2U3XK82_A0A2U3XK82_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_E1BF13_E1BF13_BOVIN_9913 and tr_A0A2Y9J0F7_A0A2Y9J0F7_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_E1BF13_E1BF13_BOVIN_9913 and tr_A0A2Y9NBF4_A0A2Y9NBF4_DELLE_9749 are exactly identical!
WARNING: Sequences tr_E1BF13_E1BF13_BOVIN_9913 and tr_A0A2Y9S5X6_A0A2Y9S5X6_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_B4KMS4_B4KMS4_DROMO_7230 and tr_A0A0M3QVK2_A0A0M3QVK2_DROBS_30019 are exactly identical!
WARNING: Sequences tr_U3IS52_U3IS52_ANAPL_8839 and tr_A0A2I0M0A4_A0A2I0M0A4_COLLI_8932 are exactly identical!
WARNING: Sequences tr_U3IS52_U3IS52_ANAPL_8839 and tr_A0A1V4K1C0_A0A1V4K1C0_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A044U9N5_A0A044U9N5_ONCVO_6282 and tr_A0A182E4W6_A0A182E4W6_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A096NJA2_A0A096NJA2_PAPAN_9555 and tr_A0A0D9RL52_A0A0D9RL52_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A096NJA2_A0A096NJA2_PAPAN_9555 and tr_A0A2K6AIX6_A0A2K6AIX6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I3LFM9_A0A2I3LFM9_PAPAN_9555 and tr_A0A2K5KZQ4_A0A2K5KZQ4_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3LFM9_A0A2I3LFM9_PAPAN_9555 and tr_A0A2K6CGX3_A0A2K6CGX3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I3LFM9_A0A2I3LFM9_PAPAN_9555 and tr_A0A2K5Y7X2_A0A2K5Y7X2_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A151LYM2_A0A151LYM2_ALLMI_8496 and tr_A0A1U7RLP6_A0A1U7RLP6_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151MKC8_A0A151MKC8_ALLMI_8496 and tr_A0A1U7S1N3_A0A1U7S1N3_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151NK45_A0A151NK45_ALLMI_8496 and tr_A0A1U7RHH0_A0A1U7RHH0_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151NLF4_A0A151NLF4_ALLMI_8496 and tr_A0A3Q0GQQ9_A0A3Q0GQQ9_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151NM50_A0A151NM50_ALLMI_8496 and tr_A0A1U7S1J5_A0A1U7S1J5_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A091J5U1_A0A091J5U1_EGRGA_188379 and tr_A0A091V8N9_A0A091V8N9_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091J5U1_A0A091J5U1_EGRGA_188379 and tr_A0A087RJV4_A0A087RJV4_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091J5U1_A0A091J5U1_EGRGA_188379 and tr_A0A0A0AD56_A0A0A0AD56_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091UN81_A0A091UN81_NIPNI_128390 and tr_A0A091WNI3_A0A091WNI3_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A093JXU6_A0A093JXU6_STRCA_441894 and tr_A0A099ZMK3_A0A099ZMK3_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A1S3AEY2_A0A1S3AEY2_ERIEU_9365 and tr_A0A2Y9N468_A0A2Y9N468_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A1S3AEY2_A0A1S3AEY2_ERIEU_9365 and tr_A0A2Y9FL87_A0A2Y9FL87_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A1S3XFH2_A0A1S3XFH2_TOBAC_4097 and tr_A0A1U7Y9P8_A0A1U7Y9P8_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3LDH7_A0A1S3LDH7_SALSA_8030 and tr_A0A060W2D3_A0A060W2D3_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3MTD2_A0A1S3MTD2_SALSA_8030 and tr_A0A1S3SNA7_A0A1S3SNA7_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3MTD2_A0A1S3MTD2_SALSA_8030 and tr_A0A060XX62_A0A060XX62_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3N034_A0A1S3N034_SALSA_8030 and tr_A0A1S3SHH5_A0A1S3SHH5_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3N034_A0A1S3N034_SALSA_8030 and tr_A0A060XYR6_A0A060XYR6_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3N034_A0A1S3N034_SALSA_8030 and tr_A0A060XYS8_A0A060XYS8_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3P3Q4_A0A1S3P3Q4_SALSA_8030 and tr_A0A060W5J5_A0A060W5J5_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3PZH7_A0A1S3PZH7_SALSA_8030 and tr_A0A060WIS4_A0A060WIS4_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3RRX5_A0A1S3RRX5_SALSA_8030 and tr_A0A060W8Y6_A0A060W8Y6_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1L8HQB4_A0A1L8HQB4_XENLA_8355 and tr_A0A1L8I0N8_A0A1L8I0N8_XENLA_8355 are exactly identical!
WARNING: Sequences tr_A0A226MXZ8_A0A226MXZ8_CALSU_9009 and tr_A0A226NRR3_A0A226NRR3_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2D0QA57_A0A2D0QA57_ICTPU_7998 and tr_A0A2D0QBB1_A0A2D0QBB1_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0QA57_A0A2D0QA57_ICTPU_7998 and tr_W5UKV0_W5UKV0_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0QEX6_A0A2D0QEX6_ICTPU_7998 and tr_A0A2D0QG06_A0A2D0QG06_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2U4AY39_A0A2U4AY39_TURTR_9739 and tr_A0A2Y9PBJ7_A0A2Y9PBJ7_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4AY39_A0A2U4AY39_TURTR_9739 and tr_A0A2Y9SDY0_A0A2Y9SDY0_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2U4AY39_A0A2U4AY39_TURTR_9739 and tr_A0A383YWQ7_A0A383YWQ7_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A2U4BC16_A0A2U4BC16_TURTR_9739 and tr_A0A2Y9PJ33_A0A2Y9PJ33_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U3VUZ0_A0A2U3VUZ0_ODORO_9708 and tr_A0A2Y9J325_A0A2Y9J325_ENHLU_391180 are exactly identical!
WARNING: Duplicate sequences found: 330

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96G42/3_mltree/Q96G42.raxml.reduced.phy

Alignment comprises 1 partitions and 69 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 69 / 69
Gaps: 0.84 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96G42/3_mltree/Q96G42.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 999 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 69 / 5520
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -141926.770988] Initial branch length optimization
[00:00:02 -120330.693900] Model parameter optimization (eps = 10.000000)
[00:00:25 -119472.238263] AUTODETECT spr round 1 (radius: 5)
[00:01:50 -76381.023008] AUTODETECT spr round 2 (radius: 10)
[00:03:24 -50335.583293] AUTODETECT spr round 3 (radius: 15)
[00:05:02 -38341.848993] AUTODETECT spr round 4 (radius: 20)
[00:06:56 -33278.758339] AUTODETECT spr round 5 (radius: 25)
[00:09:01 -32031.941682] SPR radius for FAST iterations: 25 (autodetect)
[00:09:01 -32031.941682] Model parameter optimization (eps = 3.000000)
[00:09:17 -31990.850185] FAST spr round 1 (radius: 25)
[00:10:43 -27490.554424] FAST spr round 2 (radius: 25)
[00:12:04 -27176.794306] FAST spr round 3 (radius: 25)
[00:13:17 -27150.152252] FAST spr round 4 (radius: 25)
[00:14:27 -27142.269414] FAST spr round 5 (radius: 25)
[00:15:34 -27142.269392] Model parameter optimization (eps = 1.000000)
[00:15:40 -27141.586680] SLOW spr round 1 (radius: 5)
[00:16:58 -27130.399398] SLOW spr round 2 (radius: 5)
[00:18:17 -27129.691174] SLOW spr round 3 (radius: 5)
[00:19:35 -27129.689447] SLOW spr round 4 (radius: 10)
[00:20:59 -27129.689269] SLOW spr round 5 (radius: 15)
[00:22:55 -27129.545247] SLOW spr round 6 (radius: 5)
[00:24:31 -27129.541648] SLOW spr round 7 (radius: 10)
[00:26:00 -27129.541592] SLOW spr round 8 (radius: 15)
[00:27:52 -27129.426100] SLOW spr round 9 (radius: 5)
[00:29:28 -27129.425234] SLOW spr round 10 (radius: 10)
[00:30:58 -27129.425201] SLOW spr round 11 (radius: 15)
[00:32:48 -27129.425200] SLOW spr round 12 (radius: 20)
[00:35:52 -27129.425200] SLOW spr round 13 (radius: 25)
[00:39:39 -27127.964013] SLOW spr round 14 (radius: 5)
[00:41:17 -27124.203961] SLOW spr round 15 (radius: 5)
[00:42:44 -27124.202880] SLOW spr round 16 (radius: 10)
[00:44:09 -27124.202470] SLOW spr round 17 (radius: 15)
[00:46:03 -27123.082897] SLOW spr round 18 (radius: 5)
[00:47:40 -27117.956618] SLOW spr round 19 (radius: 5)
[00:49:07 -27116.072903] SLOW spr round 20 (radius: 5)
[00:50:29 -27115.274870] SLOW spr round 21 (radius: 5)
[00:51:47 -27115.274254] SLOW spr round 22 (radius: 10)
[00:53:06 -27115.274152] SLOW spr round 23 (radius: 15)
[00:55:03 -27115.274126] SLOW spr round 24 (radius: 20)
[00:58:08 -27115.274120] SLOW spr round 25 (radius: 25)
[01:01:49 -27115.274118] Model parameter optimization (eps = 0.100000)

[01:01:57] ML tree search #1, logLikelihood: -27115.111012

[01:01:57 -140852.794921] Initial branch length optimization
[01:01:58 -120295.425551] Model parameter optimization (eps = 10.000000)
[01:02:22 -119180.883613] AUTODETECT spr round 1 (radius: 5)
[01:03:48 -74881.555953] AUTODETECT spr round 2 (radius: 10)
[01:05:22 -47986.994996] AUTODETECT spr round 3 (radius: 15)
[01:06:58 -38567.070128] AUTODETECT spr round 4 (radius: 20)
[01:08:52 -33256.033736] AUTODETECT spr round 5 (radius: 25)
[01:11:16 -32458.149900] SPR radius for FAST iterations: 25 (autodetect)
[01:11:16 -32458.149900] Model parameter optimization (eps = 3.000000)
[01:11:30 -32431.310512] FAST spr round 1 (radius: 25)
[01:13:04 -27440.748546] FAST spr round 2 (radius: 25)
[01:14:21 -27207.437796] FAST spr round 3 (radius: 25)
[01:15:34 -27169.346843] FAST spr round 4 (radius: 25)
[01:16:44 -27163.281277] FAST spr round 5 (radius: 25)
[01:17:51 -27163.281252] Model parameter optimization (eps = 1.000000)
[01:18:03 -27160.490396] SLOW spr round 1 (radius: 5)
[01:19:22 -27154.930540] SLOW spr round 2 (radius: 5)
[01:20:39 -27151.926337] SLOW spr round 3 (radius: 5)
[01:21:53 -27151.925349] SLOW spr round 4 (radius: 10)
[01:23:12 -27149.869513] SLOW spr round 5 (radius: 5)
[01:24:43 -27148.775380] SLOW spr round 6 (radius: 5)
[01:26:07 -27148.766220] SLOW spr round 7 (radius: 10)
[01:27:29 -27148.766146] SLOW spr round 8 (radius: 15)
[01:29:19 -27147.882552] SLOW spr round 9 (radius: 5)
[01:30:53 -27147.545065] SLOW spr round 10 (radius: 5)
[01:32:17 -27147.544447] SLOW spr round 11 (radius: 10)
[01:33:39 -27147.544364] SLOW spr round 12 (radius: 15)
[01:35:27 -27147.544345] SLOW spr round 13 (radius: 20)
[01:38:12 -27147.258256] SLOW spr round 14 (radius: 5)
[01:39:49 -27141.735161] SLOW spr round 15 (radius: 5)
[01:41:14 -27141.734603] SLOW spr round 16 (radius: 10)
[01:42:36 -27141.734586] SLOW spr round 17 (radius: 15)
[01:44:24 -27141.734585] SLOW spr round 18 (radius: 20)
[01:47:09 -27141.734585] SLOW spr round 19 (radius: 25)
[01:50:37 -27141.734585] Model parameter optimization (eps = 0.100000)

[01:50:40] ML tree search #2, logLikelihood: -27141.727846

[01:50:40 -140752.987739] Initial branch length optimization
[01:50:41 -120018.615149] Model parameter optimization (eps = 10.000000)
[01:51:06 -118897.135102] AUTODETECT spr round 1 (radius: 5)
[01:52:33 -77782.235480] AUTODETECT spr round 2 (radius: 10)
[01:54:05 -52321.349083] AUTODETECT spr round 3 (radius: 15)
[01:55:41 -42079.227015] AUTODETECT spr round 4 (radius: 20)
[01:57:24 -39548.198956] AUTODETECT spr round 5 (radius: 25)
[01:59:18 -37776.434594] SPR radius for FAST iterations: 25 (autodetect)
[01:59:18 -37776.434594] Model parameter optimization (eps = 3.000000)
[01:59:26 -37769.098892] FAST spr round 1 (radius: 25)
[02:01:02 -28767.065322] FAST spr round 2 (radius: 25)
[02:02:26 -27312.578527] FAST spr round 3 (radius: 25)
[02:03:43 -27191.424237] FAST spr round 4 (radius: 25)
[02:04:55 -27151.758790] FAST spr round 5 (radius: 25)
[02:06:05 -27151.738587] Model parameter optimization (eps = 1.000000)
[02:06:16 -27144.125891] SLOW spr round 1 (radius: 5)
[02:07:36 -27133.738321] SLOW spr round 2 (radius: 5)
[02:08:54 -27133.258773] SLOW spr round 3 (radius: 5)
[02:10:11 -27133.258471] SLOW spr round 4 (radius: 10)
[02:11:30 -27132.129612] SLOW spr round 5 (radius: 5)
[02:13:00 -27131.830219] SLOW spr round 6 (radius: 5)
[02:14:22 -27131.830069] SLOW spr round 7 (radius: 10)
[02:15:43 -27131.830058] SLOW spr round 8 (radius: 15)
[02:17:31 -27131.830057] SLOW spr round 9 (radius: 20)
[02:20:14 -27131.830056] SLOW spr round 10 (radius: 25)
[02:23:33 -27131.830056] Model parameter optimization (eps = 0.100000)

[02:23:36] ML tree search #3, logLikelihood: -27131.780381

[02:23:36 -141489.600948] Initial branch length optimization
[02:23:38 -120234.277888] Model parameter optimization (eps = 10.000000)
[02:24:12 -118990.160304] AUTODETECT spr round 1 (radius: 5)
[02:25:39 -75901.321576] AUTODETECT spr round 2 (radius: 10)
[02:27:12 -49751.804450] AUTODETECT spr round 3 (radius: 15)
[02:28:43 -40878.265417] AUTODETECT spr round 4 (radius: 20)
[02:30:33 -34123.242061] AUTODETECT spr round 5 (radius: 25)
[02:32:49 -32476.522717] SPR radius for FAST iterations: 25 (autodetect)
[02:32:49 -32476.522717] Model parameter optimization (eps = 3.000000)
[02:33:01 -32458.727075] FAST spr round 1 (radius: 25)
[02:34:30 -27519.174798] FAST spr round 2 (radius: 25)
[02:35:47 -27243.079534] FAST spr round 3 (radius: 25)
[02:36:59 -27186.391028] FAST spr round 4 (radius: 25)
[02:38:12 -27168.541681] FAST spr round 5 (radius: 25)
[02:39:20 -27167.377979] FAST spr round 6 (radius: 25)
[02:40:27 -27167.377682] Model parameter optimization (eps = 1.000000)
[02:40:36 -27156.600462] SLOW spr round 1 (radius: 5)
[02:41:58 -27150.189768] SLOW spr round 2 (radius: 5)
[02:43:15 -27148.119865] SLOW spr round 3 (radius: 5)
[02:44:31 -27148.119312] SLOW spr round 4 (radius: 10)
[02:45:50 -27146.989514] SLOW spr round 5 (radius: 5)
[02:47:23 -27145.080376] SLOW spr round 6 (radius: 5)
[02:48:49 -27135.332576] SLOW spr round 7 (radius: 5)
[02:50:10 -27127.908232] SLOW spr round 8 (radius: 5)
[02:51:26 -27127.907221] SLOW spr round 9 (radius: 10)
[02:52:46 -27124.819279] SLOW spr round 10 (radius: 5)
[02:54:17 -27124.818168] SLOW spr round 11 (radius: 10)
[02:55:41 -27124.319917] SLOW spr round 12 (radius: 5)
[02:57:10 -27124.319241] SLOW spr round 13 (radius: 10)
[02:58:34 -27124.319080] SLOW spr round 14 (radius: 15)
[03:00:21 -27124.318897] SLOW spr round 15 (radius: 20)
[03:03:02 -27124.318759] SLOW spr round 16 (radius: 25)
[03:06:21 -27124.318630] Model parameter optimization (eps = 0.100000)

[03:06:27] ML tree search #4, logLikelihood: -27123.355776

[03:06:27 -141726.622351] Initial branch length optimization
[03:06:29 -120722.636277] Model parameter optimization (eps = 10.000000)
[03:06:56 -119680.364727] AUTODETECT spr round 1 (radius: 5)
[03:08:21 -75647.561077] AUTODETECT spr round 2 (radius: 10)
[03:09:54 -53683.956719] AUTODETECT spr round 3 (radius: 15)
[03:11:31 -39180.865065] AUTODETECT spr round 4 (radius: 20)
[03:13:24 -34313.160733] AUTODETECT spr round 5 (radius: 25)
[03:15:33 -32186.943398] SPR radius for FAST iterations: 25 (autodetect)
[03:15:33 -32186.943398] Model parameter optimization (eps = 3.000000)
[03:15:48 -32158.387339] FAST spr round 1 (radius: 25)
[03:17:14 -27653.148044] FAST spr round 2 (radius: 25)
[03:18:31 -27434.136733] FAST spr round 3 (radius: 25)
[03:19:45 -27405.964532] FAST spr round 4 (radius: 25)
[03:20:55 -27396.936940] FAST spr round 5 (radius: 25)
[03:22:04 -27392.711797] FAST spr round 6 (radius: 25)
[03:23:13 -27392.248563] FAST spr round 7 (radius: 25)
[03:24:22 -27392.197091] Model parameter optimization (eps = 1.000000)
[03:24:31 -27391.041338] SLOW spr round 1 (radius: 5)
[03:25:49 -27383.654465] SLOW spr round 2 (radius: 5)
[03:27:08 -27381.245320] SLOW spr round 3 (radius: 5)
[03:28:26 -27380.094916] SLOW spr round 4 (radius: 5)
[03:29:42 -27380.094652] SLOW spr round 5 (radius: 10)
[03:31:02 -27375.127377] SLOW spr round 6 (radius: 5)
[03:32:33 -27375.127365] SLOW spr round 7 (radius: 10)
[03:34:00 -27374.647311] SLOW spr round 8 (radius: 5)
[03:35:28 -27374.647239] SLOW spr round 9 (radius: 10)
[03:36:52 -27374.500001] SLOW spr round 10 (radius: 5)
[03:38:21 -27374.499937] SLOW spr round 11 (radius: 10)
[03:39:46 -27374.499934] SLOW spr round 12 (radius: 15)
[03:41:39 -27160.897453] SLOW spr round 13 (radius: 5)
[03:43:17 -27125.488793] SLOW spr round 14 (radius: 5)
[03:44:43 -27125.488734] SLOW spr round 15 (radius: 10)
[03:46:06 -27125.488730] SLOW spr round 16 (radius: 15)
[03:47:56 -27125.488729] SLOW spr round 17 (radius: 20)
[03:50:39 -27125.488720] SLOW spr round 18 (radius: 25)
[03:54:03 -27125.488720] Model parameter optimization (eps = 0.100000)

[03:54:07] ML tree search #5, logLikelihood: -27125.438416

[03:54:07 -140527.002163] Initial branch length optimization
[03:54:08 -119664.006262] Model parameter optimization (eps = 10.000000)
[03:54:28 -118521.094489] AUTODETECT spr round 1 (radius: 5)
[03:55:55 -75976.839397] AUTODETECT spr round 2 (radius: 10)
[03:57:27 -49900.426393] AUTODETECT spr round 3 (radius: 15)
[03:59:02 -41343.171167] AUTODETECT spr round 4 (radius: 20)
[04:00:47 -36682.034097] AUTODETECT spr round 5 (radius: 25)
[04:03:00 -33591.501360] SPR radius for FAST iterations: 25 (autodetect)
[04:03:00 -33591.501360] Model parameter optimization (eps = 3.000000)
[04:03:16 -33575.078616] FAST spr round 1 (radius: 25)
[04:04:47 -27596.178098] FAST spr round 2 (radius: 25)
[04:06:08 -27211.938414] FAST spr round 3 (radius: 25)
[04:07:22 -27158.774195] FAST spr round 4 (radius: 25)
[04:08:32 -27149.814600] FAST spr round 5 (radius: 25)
[04:09:40 -27149.571444] FAST spr round 6 (radius: 25)
[04:10:47 -27149.552909] Model parameter optimization (eps = 1.000000)
[04:10:58 -27144.046405] SLOW spr round 1 (radius: 5)
[04:12:17 -27138.153440] SLOW spr round 2 (radius: 5)
[04:13:33 -27136.940530] SLOW spr round 3 (radius: 5)
[04:14:49 -27136.940512] SLOW spr round 4 (radius: 10)
[04:16:11 -27133.573015] SLOW spr round 5 (radius: 5)
[04:17:41 -27133.572926] SLOW spr round 6 (radius: 10)
[04:19:05 -27133.526540] SLOW spr round 7 (radius: 15)
[04:20:53 -27132.929074] SLOW spr round 8 (radius: 5)
[04:22:27 -27132.714889] SLOW spr round 9 (radius: 5)
[04:23:50 -27132.714884] SLOW spr round 10 (radius: 10)
[04:25:11 -27132.714883] SLOW spr round 11 (radius: 15)
[04:26:59 -27132.714883] SLOW spr round 12 (radius: 20)
[04:29:52 -27132.714838] SLOW spr round 13 (radius: 25)
[04:33:38 -27132.714838] Model parameter optimization (eps = 0.100000)

[04:33:42] ML tree search #6, logLikelihood: -27132.689742

[04:33:42 -141426.478279] Initial branch length optimization
[04:33:43 -120538.214365] Model parameter optimization (eps = 10.000000)
[04:34:10 -119350.075972] AUTODETECT spr round 1 (radius: 5)
[04:35:36 -75661.704841] AUTODETECT spr round 2 (radius: 10)
[04:37:09 -49681.726908] AUTODETECT spr round 3 (radius: 15)
[04:38:45 -40868.878411] AUTODETECT spr round 4 (radius: 20)
[04:40:34 -34985.700691] AUTODETECT spr round 5 (radius: 25)
[04:42:34 -32985.485148] SPR radius for FAST iterations: 25 (autodetect)
[04:42:34 -32985.485148] Model parameter optimization (eps = 3.000000)
[04:42:48 -32962.156569] FAST spr round 1 (radius: 25)
[04:44:18 -27781.993702] FAST spr round 2 (radius: 25)
[04:45:37 -27194.044168] FAST spr round 3 (radius: 25)
[04:46:51 -27167.022248] FAST spr round 4 (radius: 25)
[04:48:01 -27163.441824] FAST spr round 5 (radius: 25)
[04:49:09 -27163.440894] Model parameter optimization (eps = 1.000000)
[04:49:19 -27162.199824] SLOW spr round 1 (radius: 5)
[04:50:36 -27154.210792] SLOW spr round 2 (radius: 5)
[04:51:56 -27153.921311] SLOW spr round 3 (radius: 5)
[04:53:12 -27153.921048] SLOW spr round 4 (radius: 10)
[04:54:33 -27149.521417] SLOW spr round 5 (radius: 5)
[04:56:04 -27149.517691] SLOW spr round 6 (radius: 10)
[04:57:30 -27148.225713] SLOW spr round 7 (radius: 5)
[04:59:00 -27147.939739] SLOW spr round 8 (radius: 5)
[05:00:24 -27147.332980] SLOW spr round 9 (radius: 5)
[05:01:43 -27147.332912] SLOW spr round 10 (radius: 10)
[05:03:03 -27147.332883] SLOW spr round 11 (radius: 15)
[05:04:56 -27137.560967] SLOW spr round 12 (radius: 5)
[05:06:32 -27130.353773] SLOW spr round 13 (radius: 5)
[05:07:57 -27129.863183] SLOW spr round 14 (radius: 5)
[05:09:17 -27129.861972] SLOW spr round 15 (radius: 10)
[05:10:40 -27127.564334] SLOW spr round 16 (radius: 5)
[05:12:10 -27127.210299] SLOW spr round 17 (radius: 5)
[05:13:32 -27127.210185] SLOW spr round 18 (radius: 10)
[05:14:56 -27127.210176] SLOW spr round 19 (radius: 15)
[05:16:52 -27123.913495] SLOW spr round 20 (radius: 5)
[05:18:27 -27123.910835] SLOW spr round 21 (radius: 10)
[05:19:56 -27123.910527] SLOW spr round 22 (radius: 15)
[05:21:47 -27123.910440] SLOW spr round 23 (radius: 20)
[05:24:49 -27121.465988] SLOW spr round 24 (radius: 5)
[05:26:24 -27121.465692] SLOW spr round 25 (radius: 10)
[05:27:57 -27121.465688] SLOW spr round 26 (radius: 15)
[05:29:50 -27121.465688] SLOW spr round 27 (radius: 20)
[05:32:55 -27121.465688] SLOW spr round 28 (radius: 25)
[05:36:38 -27121.465688] Model parameter optimization (eps = 0.100000)

[05:36:43] ML tree search #7, logLikelihood: -27121.411444

[05:36:43 -140857.704328] Initial branch length optimization
[05:36:44 -119806.774726] Model parameter optimization (eps = 10.000000)
[05:37:13 -118668.871831] AUTODETECT spr round 1 (radius: 5)
[05:38:40 -75734.459734] AUTODETECT spr round 2 (radius: 10)
[05:40:11 -51978.468392] AUTODETECT spr round 3 (radius: 15)
[05:41:49 -39280.721841] AUTODETECT spr round 4 (radius: 20)
[05:43:38 -33062.635811] AUTODETECT spr round 5 (radius: 25)
[05:45:47 -31920.049328] SPR radius for FAST iterations: 25 (autodetect)
[05:45:48 -31920.049328] Model parameter optimization (eps = 3.000000)
[05:45:58 -31908.005607] FAST spr round 1 (radius: 25)
[05:47:29 -27455.831443] FAST spr round 2 (radius: 25)
[05:48:48 -27191.339096] FAST spr round 3 (radius: 25)
[05:50:00 -27167.142229] FAST spr round 4 (radius: 25)
[05:51:11 -27155.443402] FAST spr round 5 (radius: 25)
[05:52:23 -27146.685925] FAST spr round 6 (radius: 25)
[05:53:31 -27146.683680] Model parameter optimization (eps = 1.000000)
[05:53:38 -27143.530465] SLOW spr round 1 (radius: 5)
[05:54:58 -27129.309543] SLOW spr round 2 (radius: 5)
[05:56:18 -27128.253740] SLOW spr round 3 (radius: 5)
[05:57:35 -27128.252989] SLOW spr round 4 (radius: 10)
[05:58:56 -27128.252905] SLOW spr round 5 (radius: 15)
[06:00:55 -27128.252895] SLOW spr round 6 (radius: 20)
[06:03:46 -27124.488630] SLOW spr round 7 (radius: 5)
[06:05:23 -27124.471755] SLOW spr round 8 (radius: 10)
[06:06:54 -27124.468831] SLOW spr round 9 (radius: 15)
[06:08:45 -27124.468595] SLOW spr round 10 (radius: 20)
[06:11:36 -27124.468581] SLOW spr round 11 (radius: 25)
[06:14:56 -27124.468580] Model parameter optimization (eps = 0.100000)

[06:14:58] ML tree search #8, logLikelihood: -27124.446779

[06:14:59 -141408.030258] Initial branch length optimization
[06:15:00 -120367.587690] Model parameter optimization (eps = 10.000000)
[06:15:25 -119148.195870] AUTODETECT spr round 1 (radius: 5)
[06:16:51 -76260.174542] AUTODETECT spr round 2 (radius: 10)
[06:18:24 -48467.308595] AUTODETECT spr round 3 (radius: 15)
[06:19:58 -38667.415843] AUTODETECT spr round 4 (radius: 20)
[06:21:52 -32705.948222] AUTODETECT spr round 5 (radius: 25)
[06:23:58 -31172.976360] SPR radius for FAST iterations: 25 (autodetect)
[06:23:58 -31172.976360] Model parameter optimization (eps = 3.000000)
[06:24:12 -31150.833467] FAST spr round 1 (radius: 25)
[06:25:42 -27609.032789] FAST spr round 2 (radius: 25)
[06:27:03 -27172.526528] FAST spr round 3 (radius: 25)
[06:28:17 -27141.978461] FAST spr round 4 (radius: 25)
[06:29:27 -27136.917317] FAST spr round 5 (radius: 25)
[06:30:37 -27131.978562] FAST spr round 6 (radius: 25)
[06:31:45 -27131.784145] FAST spr round 7 (radius: 25)
[06:32:53 -27131.783763] Model parameter optimization (eps = 1.000000)
[06:33:00 -27130.610906] SLOW spr round 1 (radius: 5)
[06:34:19 -27121.423006] SLOW spr round 2 (radius: 5)
[06:35:36 -27120.732211] SLOW spr round 3 (radius: 5)
[06:36:52 -27120.541129] SLOW spr round 4 (radius: 5)
[06:38:07 -27120.541123] SLOW spr round 5 (radius: 10)
[06:39:24 -27120.498990] SLOW spr round 6 (radius: 15)
[06:41:13 -27119.500762] SLOW spr round 7 (radius: 5)
[06:42:45 -27119.284562] SLOW spr round 8 (radius: 5)
[06:44:11 -27119.284098] SLOW spr round 9 (radius: 10)
[06:45:33 -27119.284018] SLOW spr round 10 (radius: 15)
[06:47:19 -27119.284004] SLOW spr round 11 (radius: 20)
[06:50:03 -27119.121903] SLOW spr round 12 (radius: 5)
[06:51:37 -27119.121625] SLOW spr round 13 (radius: 10)
[06:53:05 -27119.121469] SLOW spr round 14 (radius: 15)
[06:54:49 -27118.910169] SLOW spr round 15 (radius: 5)
[06:56:23 -27118.906858] SLOW spr round 16 (radius: 10)
[06:57:50 -27118.906824] SLOW spr round 17 (radius: 15)
[06:59:35 -27118.906817] SLOW spr round 18 (radius: 20)
[07:02:20 -27118.906814] SLOW spr round 19 (radius: 25)
[07:05:44 -27117.116001] SLOW spr round 20 (radius: 5)
[07:07:19 -27117.097047] SLOW spr round 21 (radius: 10)
[07:08:48 -27117.094865] SLOW spr round 22 (radius: 15)
[07:10:34 -27117.094735] SLOW spr round 23 (radius: 20)
[07:13:20 -27117.094729] SLOW spr round 24 (radius: 25)
[07:16:44 -27117.094729] Model parameter optimization (eps = 0.100000)

[07:16:47] ML tree search #9, logLikelihood: -27117.084971

[07:16:47 -141031.036494] Initial branch length optimization
[07:16:49 -119505.909231] Model parameter optimization (eps = 10.000000)
[07:17:14 -118646.178073] AUTODETECT spr round 1 (radius: 5)
[07:18:41 -75919.590233] AUTODETECT spr round 2 (radius: 10)
[07:20:14 -52176.709702] AUTODETECT spr round 3 (radius: 15)
[07:21:54 -41452.436779] AUTODETECT spr round 4 (radius: 20)
[07:23:48 -35458.264640] AUTODETECT spr round 5 (radius: 25)
[07:25:48 -33297.413612] SPR radius for FAST iterations: 25 (autodetect)
[07:25:48 -33297.413612] Model parameter optimization (eps = 3.000000)
[07:26:00 -33248.584470] FAST spr round 1 (radius: 25)
[07:27:31 -27552.721223] FAST spr round 2 (radius: 25)
[07:28:50 -27224.791949] FAST spr round 3 (radius: 25)
[07:30:03 -27172.526572] FAST spr round 4 (radius: 25)
[07:31:15 -27162.422059] FAST spr round 5 (radius: 25)
[07:32:23 -27160.285443] FAST spr round 6 (radius: 25)
[07:33:29 -27160.283264] Model parameter optimization (eps = 1.000000)
[07:33:36 -27159.357547] SLOW spr round 1 (radius: 5)
[07:34:53 -27142.931051] SLOW spr round 2 (radius: 5)
[07:36:11 -27139.916917] SLOW spr round 3 (radius: 5)
[07:37:29 -27138.213724] SLOW spr round 4 (radius: 5)
[07:38:49 -27137.109475] SLOW spr round 5 (radius: 5)
[07:40:07 -27136.748178] SLOW spr round 6 (radius: 5)
[07:41:25 -27136.745640] SLOW spr round 7 (radius: 10)
[07:42:47 -27134.078844] SLOW spr round 8 (radius: 5)
[07:44:22 -27123.941730] SLOW spr round 9 (radius: 5)
[07:45:49 -27122.903597] SLOW spr round 10 (radius: 5)
[07:47:09 -27122.902775] SLOW spr round 11 (radius: 10)
[07:48:31 -27122.902673] SLOW spr round 12 (radius: 15)
[07:50:28 -27121.864434] SLOW spr round 13 (radius: 5)
[07:52:03 -27121.864416] SLOW spr round 14 (radius: 10)
[07:53:30 -27121.864414] SLOW spr round 15 (radius: 15)
[07:55:23 -27121.864414] SLOW spr round 16 (radius: 20)
[07:58:29 -27121.864414] SLOW spr round 17 (radius: 25)
[08:02:12 -27119.787187] SLOW spr round 18 (radius: 5)
[08:03:47 -27119.784891] SLOW spr round 19 (radius: 10)
[08:05:20 -27119.784843] SLOW spr round 20 (radius: 15)
[08:07:15 -27119.784843] SLOW spr round 21 (radius: 20)
[08:10:22 -27119.784842] SLOW spr round 22 (radius: 25)
[08:14:03 -27119.784842] Model parameter optimization (eps = 0.100000)

[08:14:08] ML tree search #10, logLikelihood: -27119.704568

[08:14:08 -141627.307800] Initial branch length optimization
[08:14:09 -120718.171213] Model parameter optimization (eps = 10.000000)
[08:14:40 -119591.418647] AUTODETECT spr round 1 (radius: 5)
[08:16:08 -74498.206571] AUTODETECT spr round 2 (radius: 10)
[08:17:42 -50287.665611] AUTODETECT spr round 3 (radius: 15)
[08:19:19 -39823.881887] AUTODETECT spr round 4 (radius: 20)
[08:21:15 -34147.640694] AUTODETECT spr round 5 (radius: 25)
[08:23:31 -32682.971308] SPR radius for FAST iterations: 25 (autodetect)
[08:23:31 -32682.971308] Model parameter optimization (eps = 3.000000)
[08:23:49 -32670.121415] FAST spr round 1 (radius: 25)
[08:25:20 -27801.960890] FAST spr round 2 (radius: 25)
[08:26:38 -27211.317898] FAST spr round 3 (radius: 25)
[08:27:54 -27152.636301] FAST spr round 4 (radius: 25)
[08:29:03 -27151.330294] FAST spr round 5 (radius: 25)
[08:30:10 -27151.330251] Model parameter optimization (eps = 1.000000)
[08:30:19 -27149.998638] SLOW spr round 1 (radius: 5)
[08:31:38 -27144.570936] SLOW spr round 2 (radius: 5)
[08:32:56 -27143.984644] SLOW spr round 3 (radius: 5)
[08:34:16 -27143.905369] SLOW spr round 4 (radius: 10)
[08:35:37 -27142.371246] SLOW spr round 5 (radius: 5)
[08:37:09 -27141.614473] SLOW spr round 6 (radius: 5)
[08:38:32 -27141.614186] SLOW spr round 7 (radius: 10)
[08:39:54 -27141.614172] SLOW spr round 8 (radius: 15)
[08:41:41 -27141.463330] SLOW spr round 9 (radius: 5)
[08:43:14 -27141.463153] SLOW spr round 10 (radius: 10)
[08:44:43 -27141.463147] SLOW spr round 11 (radius: 15)
[08:46:28 -27141.463147] SLOW spr round 12 (radius: 20)
[08:49:01 -27141.437347] SLOW spr round 13 (radius: 25)
[08:51:58 -27141.436626] Model parameter optimization (eps = 0.100000)

[08:52:02] ML tree search #11, logLikelihood: -27141.392485

[08:52:02 -140851.567810] Initial branch length optimization
[08:52:03 -120111.593172] Model parameter optimization (eps = 10.000000)
[08:52:28 -118842.071218] AUTODETECT spr round 1 (radius: 5)
[08:53:54 -76642.752506] AUTODETECT spr round 2 (radius: 10)
[08:55:28 -52254.808407] AUTODETECT spr round 3 (radius: 15)
[08:57:07 -41720.024615] AUTODETECT spr round 4 (radius: 20)
[08:59:05 -34059.636055] AUTODETECT spr round 5 (radius: 25)
[09:01:45 -32740.375749] SPR radius for FAST iterations: 25 (autodetect)
[09:01:45 -32740.375749] Model parameter optimization (eps = 3.000000)
[09:01:54 -32719.683286] FAST spr round 1 (radius: 25)
[09:03:29 -27629.628407] FAST spr round 2 (radius: 25)
[09:04:51 -27196.615250] FAST spr round 3 (radius: 25)
[09:06:05 -27169.259632] FAST spr round 4 (radius: 25)
[09:07:16 -27162.982732] FAST spr round 5 (radius: 25)
[09:08:25 -27162.752244] FAST spr round 6 (radius: 25)
[09:09:33 -27162.751833] Model parameter optimization (eps = 1.000000)
[09:09:40 -27159.872089] SLOW spr round 1 (radius: 5)
[09:10:59 -27148.875889] SLOW spr round 2 (radius: 5)
[09:12:18 -27140.717303] SLOW spr round 3 (radius: 5)
[09:13:39 -27134.478046] SLOW spr round 4 (radius: 5)
[09:14:58 -27133.432189] SLOW spr round 5 (radius: 5)
[09:16:16 -27132.266415] SLOW spr round 6 (radius: 5)
[09:17:36 -27131.879055] SLOW spr round 7 (radius: 5)
[09:18:53 -27131.646701] SLOW spr round 8 (radius: 5)
[09:20:09 -27131.646698] SLOW spr round 9 (radius: 10)
[09:21:29 -27129.629030] SLOW spr round 10 (radius: 5)
[09:22:59 -27129.577469] SLOW spr round 11 (radius: 10)
[09:24:25 -27127.554618] SLOW spr round 12 (radius: 5)
[09:25:55 -27127.554166] SLOW spr round 13 (radius: 10)
[09:27:19 -27127.554159] SLOW spr round 14 (radius: 15)
[09:29:07 -27125.307863] SLOW spr round 15 (radius: 5)
[09:30:42 -27123.578825] SLOW spr round 16 (radius: 5)
[09:32:08 -27121.677265] SLOW spr round 17 (radius: 5)
[09:33:29 -27121.675791] SLOW spr round 18 (radius: 10)
[09:34:49 -27121.675715] SLOW spr round 19 (radius: 15)
[09:36:37 -27121.675711] SLOW spr round 20 (radius: 20)
[09:39:16 -27121.675711] SLOW spr round 21 (radius: 25)
[09:42:35 -27121.675711] Model parameter optimization (eps = 0.100000)

[09:42:39] ML tree search #12, logLikelihood: -27121.614117

[09:42:39 -141445.994560] Initial branch length optimization
[09:42:40 -119809.248123] Model parameter optimization (eps = 10.000000)
[09:42:59 -118744.271581] AUTODETECT spr round 1 (radius: 5)
[09:44:25 -78120.081402] AUTODETECT spr round 2 (radius: 10)
[09:45:57 -51200.633870] AUTODETECT spr round 3 (radius: 15)
[09:47:33 -42960.547770] AUTODETECT spr round 4 (radius: 20)
[09:49:20 -39072.833092] AUTODETECT spr round 5 (radius: 25)
[09:51:32 -35046.570210] SPR radius for FAST iterations: 25 (autodetect)
[09:51:32 -35046.570210] Model parameter optimization (eps = 3.000000)
[09:51:51 -35006.379642] FAST spr round 1 (radius: 25)
[09:53:24 -27723.834695] FAST spr round 2 (radius: 25)
[09:54:41 -27205.384853] FAST spr round 3 (radius: 25)
[09:55:55 -27171.158964] FAST spr round 4 (radius: 25)
[09:57:05 -27164.983208] FAST spr round 5 (radius: 25)
[09:58:11 -27150.630846] FAST spr round 6 (radius: 25)
[09:59:21 -27144.951106] FAST spr round 7 (radius: 25)
[10:00:28 -27143.788968] FAST spr round 8 (radius: 25)
[10:01:34 -27143.788847] Model parameter optimization (eps = 1.000000)
[10:01:42 -27140.831772] SLOW spr round 1 (radius: 5)
[10:02:59 -27133.434736] SLOW spr round 2 (radius: 5)
[10:04:14 -27132.608387] SLOW spr round 3 (radius: 5)
[10:05:29 -27132.603407] SLOW spr round 4 (radius: 10)
[10:06:48 -27132.603324] SLOW spr round 5 (radius: 15)
[10:08:45 -27130.621891] SLOW spr round 6 (radius: 5)
[10:10:20 -27130.567224] SLOW spr round 7 (radius: 10)
[10:11:48 -27129.540203] SLOW spr round 8 (radius: 5)
[10:13:16 -27129.539572] SLOW spr round 9 (radius: 10)
[10:14:39 -27129.539538] SLOW spr round 10 (radius: 15)
[10:16:29 -27129.539519] SLOW spr round 11 (radius: 20)
[10:19:21 -27127.312227] SLOW spr round 12 (radius: 5)
[10:20:53 -27127.312101] SLOW spr round 13 (radius: 10)
[10:22:20 -27127.312092] SLOW spr round 14 (radius: 15)
[10:24:09 -27127.312092] SLOW spr round 15 (radius: 20)
[10:27:02 -27127.312091] SLOW spr round 16 (radius: 25)
[10:30:39 -27127.312091] Model parameter optimization (eps = 0.100000)

[10:30:49] ML tree search #13, logLikelihood: -27126.592055

[10:30:49 -141199.957808] Initial branch length optimization
[10:30:50 -119992.198328] Model parameter optimization (eps = 10.000000)
[10:31:15 -118942.748274] AUTODETECT spr round 1 (radius: 5)
[10:32:41 -74301.043768] AUTODETECT spr round 2 (radius: 10)
[10:34:13 -49369.290860] AUTODETECT spr round 3 (radius: 15)
[10:35:45 -40822.677930] AUTODETECT spr round 4 (radius: 20)
[10:37:32 -36178.306929] AUTODETECT spr round 5 (radius: 25)
[10:39:43 -33116.821769] SPR radius for FAST iterations: 25 (autodetect)
[10:39:43 -33116.821769] Model parameter optimization (eps = 3.000000)
[10:39:53 -33098.392819] FAST spr round 1 (radius: 25)
[10:41:23 -27642.630134] FAST spr round 2 (radius: 25)
[10:42:44 -27185.176284] FAST spr round 3 (radius: 25)
[10:43:58 -27148.065203] FAST spr round 4 (radius: 25)
[10:45:08 -27142.734947] FAST spr round 5 (radius: 25)
[10:46:17 -27141.817547] FAST spr round 6 (radius: 25)
[10:47:24 -27141.715764] FAST spr round 7 (radius: 25)
[10:48:31 -27141.714659] Model parameter optimization (eps = 1.000000)
[10:48:42 -27140.660892] SLOW spr round 1 (radius: 5)
[10:49:59 -27129.191074] SLOW spr round 2 (radius: 5)
[10:51:17 -27124.825284] SLOW spr round 3 (radius: 5)
[10:52:34 -27121.891049] SLOW spr round 4 (radius: 5)
[10:53:50 -27121.890328] SLOW spr round 5 (radius: 10)
[10:55:09 -27121.890291] SLOW spr round 6 (radius: 15)
[10:57:04 -27121.295935] SLOW spr round 7 (radius: 5)
[10:58:37 -27121.295879] SLOW spr round 8 (radius: 10)
[11:00:05 -27119.689453] SLOW spr round 9 (radius: 5)
[11:01:32 -27119.688614] SLOW spr round 10 (radius: 10)
[11:02:55 -27119.688578] SLOW spr round 11 (radius: 15)
[11:04:45 -27119.688576] SLOW spr round 12 (radius: 20)
[11:07:36 -27119.688576] SLOW spr round 13 (radius: 25)
[11:11:10 -27119.688576] Model parameter optimization (eps = 0.100000)

[11:11:14] ML tree search #14, logLikelihood: -27119.658154

[11:11:14 -141863.773659] Initial branch length optimization
[11:11:15 -120397.213146] Model parameter optimization (eps = 10.000000)
[11:11:37 -119429.933286] AUTODETECT spr round 1 (radius: 5)
[11:13:03 -77325.075688] AUTODETECT spr round 2 (radius: 10)
[11:14:34 -49854.211937] AUTODETECT spr round 3 (radius: 15)
[11:16:10 -38807.841209] AUTODETECT spr round 4 (radius: 20)
[11:17:56 -35304.993962] AUTODETECT spr round 5 (radius: 25)
[11:20:01 -33131.164570] SPR radius for FAST iterations: 25 (autodetect)
[11:20:01 -33131.164570] Model parameter optimization (eps = 3.000000)
[11:20:17 -33090.980114] FAST spr round 1 (radius: 25)
[11:21:49 -27749.880544] FAST spr round 2 (radius: 25)
[11:23:09 -27194.651163] FAST spr round 3 (radius: 25)
[11:24:22 -27149.665738] FAST spr round 4 (radius: 25)
[11:25:34 -27132.801359] FAST spr round 5 (radius: 25)
[11:26:41 -27131.508782] FAST spr round 6 (radius: 25)
[11:27:48 -27131.508177] Model parameter optimization (eps = 1.000000)
[11:27:57 -27129.996727] SLOW spr round 1 (radius: 5)
[11:29:15 -27124.978920] SLOW spr round 2 (radius: 5)
[11:30:30 -27124.977766] SLOW spr round 3 (radius: 10)
[11:31:48 -27124.450374] SLOW spr round 4 (radius: 5)
[11:33:21 -27122.561647] SLOW spr round 5 (radius: 5)
[11:34:44 -27122.306371] SLOW spr round 6 (radius: 5)
[11:36:03 -27122.306326] SLOW spr round 7 (radius: 10)
[11:37:23 -27121.603983] SLOW spr round 8 (radius: 5)
[11:38:51 -27121.603766] SLOW spr round 9 (radius: 10)
[11:40:15 -27121.603761] SLOW spr round 10 (radius: 15)
[11:42:02 -27121.562098] SLOW spr round 11 (radius: 20)
[11:44:45 -27121.562098] SLOW spr round 12 (radius: 25)
[11:48:01 -27121.562098] Model parameter optimization (eps = 0.100000)

[11:48:08] ML tree search #15, logLikelihood: -27121.534104

[11:48:08 -140251.604868] Initial branch length optimization
[11:48:10 -119726.199658] Model parameter optimization (eps = 10.000000)
[11:48:42 -118597.532941] AUTODETECT spr round 1 (radius: 5)
[11:50:07 -75841.811342] AUTODETECT spr round 2 (radius: 10)
[11:51:40 -48666.896250] AUTODETECT spr round 3 (radius: 15)
[11:53:10 -39462.428100] AUTODETECT spr round 4 (radius: 20)
[11:54:54 -35180.179379] AUTODETECT spr round 5 (radius: 25)
[11:56:54 -33026.761220] SPR radius for FAST iterations: 25 (autodetect)
[11:56:54 -33026.761220] Model parameter optimization (eps = 3.000000)
[11:57:14 -32999.138810] FAST spr round 1 (radius: 25)
[11:58:49 -27601.867096] FAST spr round 2 (radius: 25)
[12:00:07 -27179.919505] FAST spr round 3 (radius: 25)
[12:01:20 -27139.527706] FAST spr round 4 (radius: 25)
[12:02:31 -27135.104388] FAST spr round 5 (radius: 25)
[12:03:38 -27135.104222] Model parameter optimization (eps = 1.000000)
[12:03:45 -27133.045620] SLOW spr round 1 (radius: 5)
[12:05:02 -27129.079415] SLOW spr round 2 (radius: 5)
[12:06:20 -27128.942978] SLOW spr round 3 (radius: 5)
[12:07:33 -27128.942965] SLOW spr round 4 (radius: 10)
[12:08:53 -27128.942933] SLOW spr round 5 (radius: 15)
[12:10:42 -27128.942887] SLOW spr round 6 (radius: 20)
[12:13:15 -27128.919823] SLOW spr round 7 (radius: 25)
[12:16:29 -27128.919822] Model parameter optimization (eps = 0.100000)

[12:16:33] ML tree search #16, logLikelihood: -27128.910892

[12:16:33 -140811.820973] Initial branch length optimization
[12:16:34 -120178.338913] Model parameter optimization (eps = 10.000000)
[12:16:58 -119162.804456] AUTODETECT spr round 1 (radius: 5)
[12:18:24 -75357.027213] AUTODETECT spr round 2 (radius: 10)
[12:19:55 -52631.589182] AUTODETECT spr round 3 (radius: 15)
[12:21:33 -39159.815165] AUTODETECT spr round 4 (radius: 20)
[12:23:31 -34359.270815] AUTODETECT spr round 5 (radius: 25)
[12:25:39 -33178.150414] SPR radius for FAST iterations: 25 (autodetect)
[12:25:39 -33178.150414] Model parameter optimization (eps = 3.000000)
[12:25:50 -33157.912924] FAST spr round 1 (radius: 25)
[12:27:16 -28022.226586] FAST spr round 2 (radius: 25)
[12:28:34 -27227.245105] FAST spr round 3 (radius: 25)
[12:29:49 -27143.076584] FAST spr round 4 (radius: 25)
[12:30:58 -27134.020953] FAST spr round 5 (radius: 25)
[12:32:06 -27131.305603] FAST spr round 6 (radius: 25)
[12:33:14 -27131.305356] Model parameter optimization (eps = 1.000000)
[12:33:27 -27125.168161] SLOW spr round 1 (radius: 5)
[12:34:45 -27121.218051] SLOW spr round 2 (radius: 5)
[12:36:01 -27120.505084] SLOW spr round 3 (radius: 5)
[12:37:15 -27120.505080] SLOW spr round 4 (radius: 10)
[12:38:34 -27118.941247] SLOW spr round 5 (radius: 5)
[12:40:05 -27117.806853] SLOW spr round 6 (radius: 5)
[12:41:28 -27117.806485] SLOW spr round 7 (radius: 10)
[12:42:50 -27117.760022] SLOW spr round 8 (radius: 15)
[12:44:39 -27117.760019] SLOW spr round 9 (radius: 20)
[12:47:24 -27117.760018] SLOW spr round 10 (radius: 25)
[12:50:48 -27117.760018] Model parameter optimization (eps = 0.100000)

[12:50:54] ML tree search #17, logLikelihood: -27117.728696

[12:50:54 -141940.678209] Initial branch length optimization
[12:50:55 -120846.938406] Model parameter optimization (eps = 10.000000)
[12:51:27 -119734.344014] AUTODETECT spr round 1 (radius: 5)
[12:52:52 -77166.770127] AUTODETECT spr round 2 (radius: 10)
[12:54:23 -52476.279877] AUTODETECT spr round 3 (radius: 15)
[12:55:54 -41529.423631] AUTODETECT spr round 4 (radius: 20)
[12:57:50 -34481.927022] AUTODETECT spr round 5 (radius: 25)
[13:00:04 -33180.048639] SPR radius for FAST iterations: 25 (autodetect)
[13:00:04 -33180.048639] Model parameter optimization (eps = 3.000000)
[13:00:16 -33148.557623] FAST spr round 1 (radius: 25)
[13:01:46 -27433.196329] FAST spr round 2 (radius: 25)
[13:03:04 -27197.292038] FAST spr round 3 (radius: 25)
[13:04:17 -27185.486390] FAST spr round 4 (radius: 25)
[13:05:26 -27175.395637] FAST spr round 5 (radius: 25)
[13:06:34 -27173.034288] FAST spr round 6 (radius: 25)
[13:07:41 -27171.346580] FAST spr round 7 (radius: 25)
[13:08:47 -27171.346412] Model parameter optimization (eps = 1.000000)
[13:08:56 -27168.725001] SLOW spr round 1 (radius: 5)
[13:10:16 -27153.533702] SLOW spr round 2 (radius: 5)
[13:11:34 -27143.569290] SLOW spr round 3 (radius: 5)
[13:12:52 -27136.822590] SLOW spr round 4 (radius: 5)
[13:14:09 -27136.694935] SLOW spr round 5 (radius: 5)
[13:15:24 -27136.694797] SLOW spr round 6 (radius: 10)
[13:16:43 -27136.590029] SLOW spr round 7 (radius: 5)
[13:18:12 -27136.590028] SLOW spr round 8 (radius: 10)
[13:19:37 -27136.590028] SLOW spr round 9 (radius: 15)
[13:21:26 -27131.628165] SLOW spr round 10 (radius: 5)
[13:22:58 -27131.628163] SLOW spr round 11 (radius: 10)
[13:24:25 -27131.628163] SLOW spr round 12 (radius: 15)
[13:26:14 -27131.628163] SLOW spr round 13 (radius: 20)
[13:29:02 -27131.628163] SLOW spr round 14 (radius: 25)
[13:32:29 -27131.628163] Model parameter optimization (eps = 0.100000)

[13:32:34] ML tree search #18, logLikelihood: -27131.313484

[13:32:34 -141590.468349] Initial branch length optimization
[13:32:36 -120693.811433] Model parameter optimization (eps = 10.000000)
[13:33:01 -119554.971088] AUTODETECT spr round 1 (radius: 5)
[13:34:26 -78050.941859] AUTODETECT spr round 2 (radius: 10)
[13:35:57 -53328.922533] AUTODETECT spr round 3 (radius: 15)
[13:37:36 -40499.671257] AUTODETECT spr round 4 (radius: 20)
[13:39:26 -34202.030037] AUTODETECT spr round 5 (radius: 25)
[13:41:31 -31804.543372] SPR radius for FAST iterations: 25 (autodetect)
[13:41:31 -31804.543372] Model parameter optimization (eps = 3.000000)
[13:41:42 -31764.583877] FAST spr round 1 (radius: 25)
[13:43:09 -27583.900889] FAST spr round 2 (radius: 25)
[13:44:25 -27165.619093] FAST spr round 3 (radius: 25)
[13:45:35 -27137.528111] FAST spr round 4 (radius: 25)
[13:46:45 -27133.294450] FAST spr round 5 (radius: 25)
[13:47:52 -27133.294382] Model parameter optimization (eps = 1.000000)
[13:47:59 -27131.993976] SLOW spr round 1 (radius: 5)
[13:49:16 -27128.620706] SLOW spr round 2 (radius: 5)
[13:50:32 -27128.619643] SLOW spr round 3 (radius: 10)
[13:51:50 -27126.886241] SLOW spr round 4 (radius: 5)
[13:53:21 -27126.648118] SLOW spr round 5 (radius: 5)
[13:54:47 -27124.257646] SLOW spr round 6 (radius: 5)
[13:56:05 -27124.257359] SLOW spr round 7 (radius: 10)
[13:57:25 -27124.257287] SLOW spr round 8 (radius: 15)
[13:59:14 -27123.176081] SLOW spr round 9 (radius: 5)
[14:00:46 -27123.176045] SLOW spr round 10 (radius: 10)
[14:02:13 -27123.176044] SLOW spr round 11 (radius: 15)
[14:03:58 -27123.176043] SLOW spr round 12 (radius: 20)
[14:06:35 -27123.176035] SLOW spr round 13 (radius: 25)
[14:09:45 -27123.176035] Model parameter optimization (eps = 0.100000)

[14:09:48] ML tree search #19, logLikelihood: -27123.164554

[14:09:48 -141183.061443] Initial branch length optimization
[14:09:49 -120126.519953] Model parameter optimization (eps = 10.000000)
[14:10:11 -119068.595418] AUTODETECT spr round 1 (radius: 5)
[14:11:37 -73737.090376] AUTODETECT spr round 2 (radius: 10)
[14:13:08 -49549.708705] AUTODETECT spr round 3 (radius: 15)
[14:14:47 -40598.770733] AUTODETECT spr round 4 (radius: 20)
[14:16:44 -33759.317151] AUTODETECT spr round 5 (radius: 25)
[14:19:03 -32370.698875] SPR radius for FAST iterations: 25 (autodetect)
[14:19:03 -32370.698875] Model parameter optimization (eps = 3.000000)
[14:19:20 -32338.962739] FAST spr round 1 (radius: 25)
[14:20:50 -27784.179451] FAST spr round 2 (radius: 25)
[14:22:11 -27460.988331] FAST spr round 3 (radius: 25)
[14:23:24 -27328.710059] FAST spr round 4 (radius: 25)
[14:24:36 -27127.904261] FAST spr round 5 (radius: 25)
[14:25:44 -27124.970340] FAST spr round 6 (radius: 25)
[14:26:52 -27124.970270] Model parameter optimization (eps = 1.000000)
[14:26:59 -27124.217769] SLOW spr round 1 (radius: 5)
[14:28:16 -27114.024097] SLOW spr round 2 (radius: 5)
[14:29:35 -27108.193968] SLOW spr round 3 (radius: 5)
[14:30:51 -27108.184109] SLOW spr round 4 (radius: 10)
[14:32:09 -27108.183970] SLOW spr round 5 (radius: 15)
[14:34:00 -27108.183902] SLOW spr round 6 (radius: 20)
[14:36:51 -27108.183901] SLOW spr round 7 (radius: 25)
[14:40:30 -27108.183901] Model parameter optimization (eps = 0.100000)

[14:40:33] ML tree search #20, logLikelihood: -27108.168597


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.132974,0.592943) (0.316269,0.560886) (0.376995,1.158797) (0.173761,1.766226) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -27108.168597

AIC score: 58218.337194 / AICc score: 8070222.337194 / BIC score: 62688.784310
Free parameters (model + branch lengths): 2001

WARNING: Number of free parameters (K=2001) is larger than alignment size (n=69).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 444 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96G42/3_mltree/Q96G42.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96G42/3_mltree/Q96G42.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96G42/3_mltree/Q96G42.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96G42/3_mltree/Q96G42.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96G42/3_mltree/Q96G42.raxml.log

Analysis started: 01-Jul-2021 07:50:11 / finished: 01-Jul-2021 22:30:45

Elapsed time: 52833.819 seconds

Consumed energy: 4798.857 Wh (= 24 km in an electric car, or 120 km with an e-scooter!)