RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 16-Jul-2021 19:08:26 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EY9/2_msa/Q96EY9_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EY9/3_mltree/Q96EY9 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EY9/2_msa/Q96EY9_trimmed_msa.fasta [00:00:00] Loaded alignment with 372 taxa and 25 sites WARNING: Sequences tr_V7BVH1_V7BVH1_PHAVU_3885 and tr_I1M485_I1M485_SOYBN_3847 are exactly identical! WARNING: Sequences tr_V7BVH1_V7BVH1_PHAVU_3885 and tr_F6GVY6_F6GVY6_VITVI_29760 are exactly identical! WARNING: Sequences tr_V7BVH1_V7BVH1_PHAVU_3885 and tr_A0A3Q0ERQ2_A0A3Q0ERQ2_VIGRR_3916 are exactly identical! WARNING: Sequences tr_V7BVH1_V7BVH1_PHAVU_3885 and tr_A0A1U7ZV87_A0A1U7ZV87_NELNU_4432 are exactly identical! WARNING: Sequences tr_B4QCZ5_B4QCZ5_DROSI_7240 and tr_Q7K157_Q7K157_DROME_7227 are exactly identical! WARNING: Sequences sp_Q6PAT0_ADAT3_MOUSE_10090 and sp_Q561R2_ADAT3_RAT_10116 are exactly identical! WARNING: Sequences sp_Q6PAT0_ADAT3_MOUSE_10090 and tr_A0A1U8CJ38_A0A1U8CJ38_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3Z8D8_M3Z8D8_MUSPF_9669 and tr_A0A2U3Z9C2_A0A2U3Z9C2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z8D8_M3Z8D8_MUSPF_9669 and tr_A0A2Y9L5F6_A0A2Y9L5F6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_C5YC40_C5YC40_SORBI_4558 and tr_A0A1D6EFG6_A0A1D6EFG6_MAIZE_4577 are exactly identical! WARNING: Sequences tr_C5YC40_C5YC40_SORBI_4558 and tr_A0A1D6J3S7_A0A1D6J3S7_MAIZE_4577 are exactly identical! WARNING: Sequences tr_C5YC40_C5YC40_SORBI_4558 and tr_A0A2T7CS31_A0A2T7CS31_9POAL_1504633 are exactly identical! WARNING: Sequences tr_G1PYD3_G1PYD3_MYOLU_59463 and tr_L5L6Q9_L5L6Q9_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1PYD3_G1PYD3_MYOLU_59463 and tr_A0A2U3X615_A0A2U3X615_ODORO_9708 are exactly identical! WARNING: Sequences tr_D8QYM6_D8QYM6_SELML_88036 and tr_D8R912_D8R912_SELML_88036 are exactly identical! WARNING: Sequences tr_A8BYI0_A8BYI0_GIAIC_184922 and tr_E1EZD4_E1EZD4_GIAIA_658858 are exactly identical! WARNING: Sequences tr_C0NYV0_C0NYV0_AJECG_447093 and tr_A0A1B7NYE1_A0A1B7NYE1_9EURO_1658172 are exactly identical! WARNING: Sequences tr_Q28ZM8_Q28ZM8_DROPS_46245 and tr_B4GH18_B4GH18_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A179USW5_A0A179USW5_BLAGS_559298 and tr_C5GNX6_C5GNX6_AJEDR_559297 are exactly identical! WARNING: Sequences tr_A0A179USW5_A0A179USW5_BLAGS_559298 and tr_C1HC15_C1HC15_PARBA_502779 are exactly identical! WARNING: Sequences tr_A0A179USW5_A0A179USW5_BLAGS_559298 and tr_A0A1B7P0H5_A0A1B7P0H5_9EURO_1658172 are exactly identical! WARNING: Sequences tr_A0A179USW5_A0A179USW5_BLAGS_559298 and tr_A0A1J9PVY4_A0A1J9PVY4_9EURO_1447872 are exactly identical! WARNING: Sequences tr_Q5KK48_Q5KK48_CRYNJ_214684 and tr_E6R1R5_E6R1R5_CRYGW_367775 are exactly identical! WARNING: Sequences tr_Q5KK48_Q5KK48_CRYNJ_214684 and tr_A0A095CAP9_A0A095CAP9_CRYGR_294750 are exactly identical! WARNING: Sequences tr_Q4D5T2_Q4D5T2_TRYCC_353153 and tr_Q4DM44_Q4DM44_TRYCC_353153 are exactly identical! WARNING: Sequences tr_A0A3B5Q6K4_A0A3B5Q6K4_XIPMA_8083 and tr_I3KZB0_I3KZB0_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5Q6K4_A0A3B5Q6K4_XIPMA_8083 and tr_H3DE49_H3DE49_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B5Q6K4_A0A3B5Q6K4_XIPMA_8083 and tr_G3NDR1_G3NDR1_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A3B5Q6K4_A0A3B5Q6K4_XIPMA_8083 and tr_A0A087YPV6_A0A087YPV6_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5Q6K4_A0A3B5Q6K4_XIPMA_8083 and tr_A0A0P7WIR1_A0A0P7WIR1_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A3B5Q6K4_A0A3B5Q6K4_XIPMA_8083 and tr_A0A1S3PLE0_A0A1S3PLE0_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B5Q6K4_A0A3B5Q6K4_XIPMA_8083 and tr_A0A2I4CNV7_A0A2I4CNV7_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A3B5Q6K4_A0A3B5Q6K4_XIPMA_8083 and tr_A0A060VQT2_A0A060VQT2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A3B5Q6K4_A0A3B5Q6K4_XIPMA_8083 and tr_A0A2U9C926_A0A2U9C926_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A368RQV3_A0A368RQV3_SETIT_4555 and tr_A0A368S307_A0A368S307_SETIT_4555 are exactly identical! WARNING: Sequences tr_A0A368RQV3_A0A368RQV3_SETIT_4555 and tr_A0A3B6FNW4_A0A3B6FNW4_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A368RQV3_A0A368RQV3_SETIT_4555 and tr_A0A3B6MQ18_A0A3B6MQ18_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A158N973_A0A158N973_ATTCE_12957 and tr_A0A151IXL6_A0A151IXL6_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158N973_A0A158N973_ATTCE_12957 and tr_A0A195B3X6_A0A195B3X6_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158N973_A0A158N973_ATTCE_12957 and tr_A0A195FPJ5_A0A195FPJ5_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158N973_A0A158N973_ATTCE_12957 and tr_A0A195CUH3_A0A195CUH3_9HYME_456900 are exactly identical! WARNING: Sequences tr_H3GLB8_H3GLB8_PHYRM_164328 and tr_A0A329RPT1_A0A329RPT1_9STRA_29920 are exactly identical! WARNING: Sequences sp_Q96EY9_ADAT3_HUMAN_9606 and tr_A0A2R9CIS7_A0A2R9CIS7_PANPA_9597 are exactly identical! WARNING: Sequences tr_J3KTX1_J3KTX1_ORYBR_4533 and tr_A0A0E0HN59_A0A0E0HN59_ORYNI_4536 are exactly identical! WARNING: Sequences tr_J3KTX1_J3KTX1_ORYBR_4533 and tr_B8BD15_B8BD15_ORYSI_39946 are exactly identical! WARNING: Sequences tr_J3KTX1_J3KTX1_ORYBR_4533 and tr_I1QM36_I1QM36_ORYGL_4538 are exactly identical! WARNING: Sequences tr_J3KTX1_J3KTX1_ORYBR_4533 and tr_A0A0E0EPN4_A0A0E0EPN4_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_J3KTX1_J3KTX1_ORYBR_4533 and tr_A0A0E0QN37_A0A0E0QN37_ORYRU_4529 are exactly identical! WARNING: Sequences tr_J3KTX1_J3KTX1_ORYBR_4533 and tr_A0A0D3H3T6_A0A0D3H3T6_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_J3KTX1_J3KTX1_ORYBR_4533 and tr_A0A0E0AZR1_A0A0E0AZR1_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_J3KTX1_J3KTX1_ORYBR_4533 and tr_A0A0E0LYH0_A0A0E0LYH0_ORYPU_4537 are exactly identical! WARNING: Sequences tr_J3KTX1_J3KTX1_ORYBR_4533 and tr_A0A0E0MLR2_A0A0E0MLR2_ORYPU_4537 are exactly identical! WARNING: Sequences tr_J3KTX1_J3KTX1_ORYBR_4533 and tr_Q6ERC2_Q6ERC2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_Q2PIY7_Q2PIY7_ASPOR_510516 and tr_A0A0L1J2X7_A0A0L1J2X7_ASPNO_1509407 are exactly identical! WARNING: Sequences tr_A0A0J9Y8Y4_A0A0J9Y8Y4_BRUMA_6279 and tr_A0A0N4TEU6_A0A0N4TEU6_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0J9Y8Y4_A0A0J9Y8Y4_BRUMA_6279 and tr_A0A0R3RFA3_A0A0R3RFA3_9BILA_1147741 are exactly identical! WARNING: Sequences tr_E5S0L4_E5S0L4_TRISP_6334 and tr_A0A0V0S117_A0A0V0S117_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5S0L4_E5S0L4_TRISP_6334 and tr_A0A0V0W734_A0A0V0W734_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5S0L4_E5S0L4_TRISP_6334 and tr_A0A0V0UVC8_A0A0V0UVC8_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5S0L4_E5S0L4_TRISP_6334 and tr_A0A0V0ZAF3_A0A0V0ZAF3_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5S0L4_E5S0L4_TRISP_6334 and tr_A0A0V1M544_A0A0V1M544_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5S0L4_E5S0L4_TRISP_6334 and tr_A0A0V1GVJ8_A0A0V1GVJ8_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5S0L4_E5S0L4_TRISP_6334 and tr_A0A0V0TDM1_A0A0V0TDM1_9BILA_144512 are exactly identical! WARNING: Sequences tr_F4PA40_F4PA40_BATDJ_684364 and tr_A0A177WX61_A0A177WX61_BATDE_403673 are exactly identical! WARNING: Sequences tr_G3TQG6_G3TQG6_LOXAF_9785 and tr_A0A2Y9FZX3_A0A2Y9FZX3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2R8MTH0_A0A2R8MTH0_CALJA_9483 and tr_F7H410_F7H410_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2R8MTH0_A0A2R8MTH0_CALJA_9483 and tr_A0A0A0MUY5_A0A0A0MUY5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2R8MTH0_A0A2R8MTH0_CALJA_9483 and tr_A0A2K6AVL0_A0A2K6AVL0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A286ZNI1_A0A286ZNI1_PIG_9823 and tr_A0A2U4C7Y4_A0A2U4C7Y4_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A286ZNI1_A0A286ZNI1_PIG_9823 and tr_A0A2Y9LTH6_A0A2Y9LTH6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A286ZNI1_A0A286ZNI1_PIG_9823 and tr_A0A2Y9EQ31_A0A2Y9EQ31_PHYCD_9755 are exactly identical! WARNING: Sequences tr_E3K6V8_E3K6V8_PUCGT_418459 and tr_A0A0L6UA93_A0A0L6UA93_9BASI_27349 are exactly identical! WARNING: Sequences tr_G1XMH2_G1XMH2_ARTOA_756982 and tr_S8BL42_S8BL42_DACHA_1284197 are exactly identical! WARNING: Sequences tr_A0A2K2DQU6_A0A2K2DQU6_BRADI_15368 and tr_A0A287E0E3_A0A287E0E3_HORVV_112509 are exactly identical! WARNING: Sequences tr_A0A2K2DQU6_A0A2K2DQU6_BRADI_15368 and tr_A0A3B6KE81_A0A3B6KE81_WHEAT_4565 are exactly identical! WARNING: Sequences tr_B3RRC1_B3RRC1_TRIAD_10228 and tr_A0A369SFC2_A0A369SFC2_9METZ_287889 are exactly identical! WARNING: Sequences tr_M4CI96_M4CI96_BRARP_51351 and tr_A0A078IJF8_A0A078IJF8_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4CI96_M4CI96_BRARP_51351 and tr_V4KLC2_V4KLC2_EUTSA_72664 are exactly identical! WARNING: Sequences tr_R1D595_R1D595_EMIHU_2903 and tr_R1D893_R1D893_EMIHU_2903 are exactly identical! WARNING: Sequences tr_S2JU05_S2JU05_MUCC1_1220926 and tr_A0A0C9MEU9_A0A0C9MEU9_9FUNG_91626 are exactly identical! WARNING: Sequences tr_S2JU05_S2JU05_MUCC1_1220926 and tr_A0A168N4R8_A0A168N4R8_MUCCL_747725 are exactly identical! WARNING: Sequences tr_W2R212_W2R212_PHYPN_761204 and tr_A0A0W8BWR2_A0A0W8BWR2_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2R212_W2R212_PHYPN_761204 and tr_W2KEI0_W2KEI0_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A067FPZ2_A0A067FPZ2_CITSI_2711 and tr_V4TR27_V4TR27_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067FPZ2_A0A067FPZ2_CITSI_2711 and tr_A0A2H5Q7A4_A0A2H5Q7A4_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067QE14_A0A067QE14_ZOONE_136037 and tr_A0A067RLB3_A0A067RLB3_ZOONE_136037 are exactly identical! WARNING: Sequences tr_A0A067KH79_A0A067KH79_JATCU_180498 and tr_A0A2R6R2C1_A0A2R6R2C1_ACTCH_1590841 are exactly identical! WARNING: Sequences tr_A0A0A0KJ95_A0A0A0KJ95_CUCSA_3659 and tr_A0A1S4E5Y1_A0A1S4E5Y1_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0D2TS31_A0A0D2TS31_GOSRA_29730 and tr_A0A1U8KCS3_A0A1U8KCS3_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2TS31_A0A0D2TS31_GOSRA_29730 and tr_A0A1U8PIW4_A0A1U8PIW4_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0A1N6G7_A0A0A1N6G7_9FUNG_58291 and tr_A0A0A1PH40_A0A0A1PH40_9FUNG_58291 are exactly identical! WARNING: Sequences tr_A0A091JHN2_A0A091JHN2_EGRGA_188379 and tr_A0A091WAR1_A0A091WAR1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091JHN2_A0A091JHN2_EGRGA_188379 and tr_A0A0A0AC44_A0A0A0AC44_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A166AJK0_A0A166AJK0_DAUCA_79200 and tr_A0A175YN87_A0A175YN87_DAUCA_79200 are exactly identical! WARNING: Sequences tr_A0A1S4C7H7_A0A1S4C7H7_TOBAC_4097 and tr_A0A1U7UZE2_A0A1U7UZE2_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3H5J5_A0A1S3H5J5_LINUN_7574 and tr_A0A1S3HYQ6_A0A1S3HYQ6_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3E8L5_A0A1S3E8L5_CICAR_3827 and tr_A0A2C9U2F2_A0A2C9U2F2_MANES_3983 are exactly identical! WARNING: Sequences tr_A0A1S3E8L5_A0A1S3E8L5_CICAR_3827 and tr_A0A2G5C5A6_A0A2G5C5A6_AQUCA_218851 are exactly identical! WARNING: Sequences tr_A0A1S3E8L5_A0A1S3E8L5_CICAR_3827 and tr_A0A2P5FBI6_A0A2P5FBI6_TREOI_63057 are exactly identical! WARNING: Sequences tr_A0A1S3E8L5_A0A1S3E8L5_CICAR_3827 and tr_A0A2P5AEC5_A0A2P5AEC5_PARAD_3476 are exactly identical! WARNING: Sequences tr_A0A1L8FE29_A0A1L8FE29_XENLA_8355 and tr_A0A1L8FIG0_A0A1L8FIG0_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1U7Y6F8_A0A1U7Y6F8_NICSY_4096 and tr_A0A2G2ZYY5_A0A2G2ZYY5_CAPAN_4072 are exactly identical! WARNING: Sequences tr_A0A1Y2BDU0_A0A1Y2BDU0_9FUNG_329046 and tr_A0A1Y2C114_A0A1Y2C114_9FUNG_329046 are exactly identical! WARNING: Sequences tr_A0A2N5TBH5_A0A2N5TBH5_9BASI_200324 and tr_A0A2N5W466_A0A2N5W466_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A2G4T771_A0A2G4T771_9FUNG_1340429 and tr_A0A367K8J2_A0A367K8J2_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2G4T771_A0A2G4T771_9FUNG_1340429 and tr_A0A367KEL3_A0A367KEL3_9FUNG_86630 are exactly identical! WARNING: Duplicate sequences found: 106 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EY9/3_mltree/Q96EY9.raxml.reduced.phy Alignment comprises 1 partitions and 25 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 25 / 25 Gaps: 1.11 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EY9/3_mltree/Q96EY9.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 372 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 25 / 2000 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -12226.353099] Initial branch length optimization [00:00:00 -9858.729796] Model parameter optimization (eps = 10.000000) [00:00:04 -9793.692182] AUTODETECT spr round 1 (radius: 5) [00:00:13 -7656.256822] AUTODETECT spr round 2 (radius: 10) [00:00:25 -5920.222694] AUTODETECT spr round 3 (radius: 15) [00:00:38 -5094.682468] AUTODETECT spr round 4 (radius: 20) [00:00:53 -4692.412575] AUTODETECT spr round 5 (radius: 25) [00:01:08 -4481.874540] SPR radius for FAST iterations: 25 (autodetect) [00:01:08 -4481.874540] Model parameter optimization (eps = 3.000000) [00:01:11 -4440.587826] FAST spr round 1 (radius: 25) [00:01:22 -4046.176227] FAST spr round 2 (radius: 25) [00:01:31 -3975.563969] FAST spr round 3 (radius: 25) [00:01:41 -3970.325314] FAST spr round 4 (radius: 25) [00:01:50 -3967.513103] FAST spr round 5 (radius: 25) [00:01:58 -3967.512909] Model parameter optimization (eps = 1.000000) [00:02:01 -3966.573861] SLOW spr round 1 (radius: 5) [00:02:14 -3965.783264] SLOW spr round 2 (radius: 5) [00:02:25 -3965.756788] SLOW spr round 3 (radius: 10) [00:02:36 -3965.755467] SLOW spr round 4 (radius: 15) [00:02:53 -3962.839453] SLOW spr round 5 (radius: 5) [00:03:07 -3945.553528] SLOW spr round 6 (radius: 5) [00:03:19 -3945.553528] SLOW spr round 7 (radius: 10) [00:03:30 -3945.553525] SLOW spr round 8 (radius: 15) [00:03:46 -3945.553525] SLOW spr round 9 (radius: 20) [00:04:04 -3939.435420] SLOW spr round 10 (radius: 5) [00:04:19 -3930.724901] SLOW spr round 11 (radius: 5) [00:04:32 -3929.871537] SLOW spr round 12 (radius: 5) [00:04:44 -3929.871468] SLOW spr round 13 (radius: 10) [00:04:54 -3928.777279] SLOW spr round 14 (radius: 5) [00:05:09 -3927.025067] SLOW spr round 15 (radius: 5) [00:05:21 -3927.025048] SLOW spr round 16 (radius: 10) [00:05:32 -3927.025036] SLOW spr round 17 (radius: 15) [00:05:48 -3926.758085] SLOW spr round 18 (radius: 5) [00:06:02 -3926.732165] SLOW spr round 19 (radius: 10) [00:06:14 -3926.732154] SLOW spr round 20 (radius: 15) [00:06:29 -3926.732154] SLOW spr round 21 (radius: 20) [00:06:47 -3926.524182] SLOW spr round 22 (radius: 5) [00:07:02 -3925.218175] SLOW spr round 23 (radius: 5) [00:07:14 -3925.217804] SLOW spr round 24 (radius: 10) [00:07:26 -3922.871011] SLOW spr round 25 (radius: 5) [00:07:40 -3922.870984] SLOW spr round 26 (radius: 10) [00:07:52 -3919.980219] SLOW spr round 27 (radius: 5) [00:08:06 -3918.760080] SLOW spr round 28 (radius: 5) [00:08:18 -3918.757787] SLOW spr round 29 (radius: 10) [00:08:29 -3918.757310] SLOW spr round 30 (radius: 15) [00:08:46 -3917.271093] SLOW spr round 31 (radius: 5) [00:09:00 -3917.270850] SLOW spr round 32 (radius: 10) [00:09:12 -3917.270842] SLOW spr round 33 (radius: 15) [00:09:27 -3917.270840] SLOW spr round 34 (radius: 20) [00:09:46 -3880.749538] SLOW spr round 35 (radius: 5) [00:10:01 -3877.348898] SLOW spr round 36 (radius: 5) [00:10:14 -3875.508360] SLOW spr round 37 (radius: 5) [00:10:26 -3873.330162] SLOW spr round 38 (radius: 5) [00:10:37 -3873.283764] SLOW spr round 39 (radius: 10) [00:10:48 -3873.283727] SLOW spr round 40 (radius: 15) [00:11:04 -3871.501476] SLOW spr round 41 (radius: 5) [00:11:19 -3870.740820] SLOW spr round 42 (radius: 5) [00:11:31 -3870.738299] SLOW spr round 43 (radius: 10) [00:11:42 -3869.081939] SLOW spr round 44 (radius: 5) [00:11:56 -3868.262650] SLOW spr round 45 (radius: 5) [00:12:08 -3868.262645] SLOW spr round 46 (radius: 10) [00:12:19 -3868.262645] SLOW spr round 47 (radius: 15) [00:12:36 -3868.187223] SLOW spr round 48 (radius: 20) [00:12:54 -3866.719913] SLOW spr round 49 (radius: 5) [00:13:09 -3857.109393] SLOW spr round 50 (radius: 5) [00:13:22 -3851.572667] SLOW spr round 51 (radius: 5) [00:13:33 -3851.572661] SLOW spr round 52 (radius: 10) [00:13:44 -3851.572660] SLOW spr round 53 (radius: 15) [00:14:01 -3851.572660] SLOW spr round 54 (radius: 20) [00:14:19 -3851.572660] SLOW spr round 55 (radius: 25) [00:14:40 -3850.990764] SLOW spr round 56 (radius: 5) [00:14:54 -3850.990764] SLOW spr round 57 (radius: 10) [00:15:07 -3850.990764] SLOW spr round 58 (radius: 15) [00:15:22 -3850.990764] SLOW spr round 59 (radius: 20) [00:15:40 -3850.990764] SLOW spr round 60 (radius: 25) [00:16:01 -3850.990764] Model parameter optimization (eps = 0.100000) [00:16:03] ML tree search #1, logLikelihood: -3850.672315 [00:16:03 -12093.229045] Initial branch length optimization [00:16:03 -9749.596812] Model parameter optimization (eps = 10.000000) [00:16:07 -9697.034240] AUTODETECT spr round 1 (radius: 5) [00:16:16 -7530.351978] AUTODETECT spr round 2 (radius: 10) [00:16:27 -6164.183661] AUTODETECT spr round 3 (radius: 15) [00:16:39 -5063.512819] AUTODETECT spr round 4 (radius: 20) [00:16:51 -4819.793794] AUTODETECT spr round 5 (radius: 25) [00:17:03 -4753.610638] SPR radius for FAST iterations: 25 (autodetect) [00:17:03 -4753.610638] Model parameter optimization (eps = 3.000000) [00:17:09 -4713.748301] FAST spr round 1 (radius: 25) [00:17:19 -4094.563484] FAST spr round 2 (radius: 25) [00:17:29 -3984.196466] FAST spr round 3 (radius: 25) [00:17:38 -3970.382571] FAST spr round 4 (radius: 25) [00:17:47 -3967.040360] FAST spr round 5 (radius: 25) [00:17:56 -3966.933557] FAST spr round 6 (radius: 25) [00:18:05 -3966.933434] Model parameter optimization (eps = 1.000000) [00:18:09 -3961.618983] SLOW spr round 1 (radius: 5) [00:18:21 -3960.357213] SLOW spr round 2 (radius: 5) [00:18:33 -3960.356160] SLOW spr round 3 (radius: 10) [00:18:43 -3960.341310] SLOW spr round 4 (radius: 15) [00:19:01 -3957.038233] SLOW spr round 5 (radius: 5) [00:19:16 -3956.439563] SLOW spr round 6 (radius: 5) [00:19:28 -3955.781427] SLOW spr round 7 (radius: 5) [00:19:39 -3955.781400] SLOW spr round 8 (radius: 10) [00:19:50 -3955.033568] SLOW spr round 9 (radius: 5) [00:20:04 -3955.033565] SLOW spr round 10 (radius: 10) [00:20:16 -3954.304770] SLOW spr round 11 (radius: 5) [00:20:30 -3954.302552] SLOW spr round 12 (radius: 10) [00:20:42 -3954.302423] SLOW spr round 13 (radius: 15) [00:20:58 -3952.568740] SLOW spr round 14 (radius: 5) [00:21:13 -3951.695991] SLOW spr round 15 (radius: 5) [00:21:25 -3951.694745] SLOW spr round 16 (radius: 10) [00:21:36 -3951.694700] SLOW spr round 17 (radius: 15) [00:21:53 -3951.227164] SLOW spr round 18 (radius: 5) [00:22:07 -3949.608690] SLOW spr round 19 (radius: 5) [00:22:20 -3949.608098] SLOW spr round 20 (radius: 10) [00:22:31 -3949.608098] SLOW spr round 21 (radius: 15) [00:22:47 -3949.363312] SLOW spr round 22 (radius: 5) [00:23:02 -3947.988172] SLOW spr round 23 (radius: 5) [00:23:14 -3947.987838] SLOW spr round 24 (radius: 10) [00:23:25 -3947.987836] SLOW spr round 25 (radius: 15) [00:23:41 -3947.987836] SLOW spr round 26 (radius: 20) [00:23:59 -3945.191365] SLOW spr round 27 (radius: 5) [00:24:13 -3945.191291] SLOW spr round 28 (radius: 10) [00:24:26 -3945.191289] SLOW spr round 29 (radius: 15) [00:24:41 -3945.191289] SLOW spr round 30 (radius: 20) [00:24:58 -3945.191289] SLOW spr round 31 (radius: 25) [00:25:15 -3942.650927] SLOW spr round 32 (radius: 5) [00:25:30 -3942.640874] SLOW spr round 33 (radius: 10) [00:25:43 -3942.640873] SLOW spr round 34 (radius: 15) [00:25:58 -3942.337893] SLOW spr round 35 (radius: 5) [00:26:12 -3942.294967] SLOW spr round 36 (radius: 10) [00:26:25 -3942.294817] SLOW spr round 37 (radius: 15) [00:26:40 -3942.294817] SLOW spr round 38 (radius: 20) [00:26:58 -3942.294817] SLOW spr round 39 (radius: 25) [00:27:15 -3942.294817] Model parameter optimization (eps = 0.100000) [00:27:19] ML tree search #2, logLikelihood: -3941.599897 [00:27:19 -12174.197169] Initial branch length optimization [00:27:19 -10149.726658] Model parameter optimization (eps = 10.000000) [00:27:25 -9891.535487] AUTODETECT spr round 1 (radius: 5) [00:27:33 -7032.279231] AUTODETECT spr round 2 (radius: 10) [00:27:44 -5513.798743] AUTODETECT spr round 3 (radius: 15) [00:27:57 -4984.070485] AUTODETECT spr round 4 (radius: 20) [00:28:10 -4848.118071] AUTODETECT spr round 5 (radius: 25) [00:28:23 -4652.128742] SPR radius for FAST iterations: 25 (autodetect) [00:28:23 -4652.128742] Model parameter optimization (eps = 3.000000) [00:28:27 -4639.888029] FAST spr round 1 (radius: 25) [00:28:38 -4057.748877] FAST spr round 2 (radius: 25) [00:28:48 -3986.817574] FAST spr round 3 (radius: 25) [00:28:58 -3969.635694] FAST spr round 4 (radius: 25) [00:29:07 -3961.370130] FAST spr round 5 (radius: 25) [00:29:15 -3961.144129] FAST spr round 6 (radius: 25) [00:29:24 -3961.143811] Model parameter optimization (eps = 1.000000) [00:29:28 -3958.713999] SLOW spr round 1 (radius: 5) [00:29:39 -3956.573152] SLOW spr round 2 (radius: 5) [00:29:51 -3956.571275] SLOW spr round 3 (radius: 10) [00:30:02 -3936.287466] SLOW spr round 4 (radius: 5) [00:30:16 -3936.044340] SLOW spr round 5 (radius: 5) [00:30:28 -3936.044254] SLOW spr round 6 (radius: 10) [00:30:39 -3926.530375] SLOW spr round 7 (radius: 5) [00:30:52 -3926.521537] SLOW spr round 8 (radius: 10) [00:31:04 -3920.162937] SLOW spr round 9 (radius: 5) [00:31:18 -3920.162807] SLOW spr round 10 (radius: 10) [00:31:29 -3920.162724] SLOW spr round 11 (radius: 15) [00:31:45 -3918.230533] SLOW spr round 12 (radius: 5) [00:31:59 -3917.186169] SLOW spr round 13 (radius: 5) [00:32:11 -3917.185669] SLOW spr round 14 (radius: 10) [00:32:22 -3917.185570] SLOW spr round 15 (radius: 15) [00:32:38 -3916.366625] SLOW spr round 16 (radius: 5) [00:32:53 -3914.805663] SLOW spr round 17 (radius: 5) [00:33:05 -3914.805567] SLOW spr round 18 (radius: 10) [00:33:16 -3914.805550] SLOW spr round 19 (radius: 15) [00:33:31 -3914.757751] SLOW spr round 20 (radius: 20) [00:33:49 -3913.563371] SLOW spr round 21 (radius: 5) [00:34:04 -3913.563162] SLOW spr round 22 (radius: 10) [00:34:16 -3913.563065] SLOW spr round 23 (radius: 15) [00:34:31 -3913.383198] SLOW spr round 24 (radius: 5) [00:34:45 -3913.294314] SLOW spr round 25 (radius: 10) [00:34:58 -3913.293623] SLOW spr round 26 (radius: 15) [00:35:13 -3913.131690] SLOW spr round 27 (radius: 5) [00:35:27 -3913.078564] SLOW spr round 28 (radius: 10) [00:35:39 -3913.078527] SLOW spr round 29 (radius: 15) [00:35:54 -3913.078524] SLOW spr round 30 (radius: 20) [00:36:12 -3913.078520] SLOW spr round 31 (radius: 25) [00:36:30 -3909.848299] SLOW spr round 32 (radius: 5) [00:36:45 -3909.848271] SLOW spr round 33 (radius: 10) [00:36:58 -3909.230528] SLOW spr round 34 (radius: 5) [00:37:11 -3909.230519] SLOW spr round 35 (radius: 10) [00:37:22 -3909.230516] SLOW spr round 36 (radius: 15) [00:37:38 -3908.547341] SLOW spr round 37 (radius: 5) [00:37:52 -3908.547335] SLOW spr round 38 (radius: 10) [00:38:04 -3908.547332] SLOW spr round 39 (radius: 15) [00:38:19 -3908.547329] SLOW spr round 40 (radius: 20) [00:38:37 -3908.547325] SLOW spr round 41 (radius: 25) [00:38:55 -3907.489409] SLOW spr round 42 (radius: 5) [00:39:10 -3907.489401] SLOW spr round 43 (radius: 10) [00:39:23 -3907.489398] SLOW spr round 44 (radius: 15) [00:39:38 -3907.489395] SLOW spr round 45 (radius: 20) [00:39:56 -3907.489392] SLOW spr round 46 (radius: 25) [00:40:14 -3907.489389] Model parameter optimization (eps = 0.100000) [00:40:18] ML tree search #3, logLikelihood: -3906.627316 [00:40:18 -12056.365794] Initial branch length optimization [00:40:18 -9758.732779] Model parameter optimization (eps = 10.000000) [00:40:22 -9699.980587] AUTODETECT spr round 1 (radius: 5) [00:40:31 -7612.365816] AUTODETECT spr round 2 (radius: 10) [00:40:43 -6072.206364] AUTODETECT spr round 3 (radius: 15) [00:40:57 -5186.390654] AUTODETECT spr round 4 (radius: 20) [00:41:11 -4935.740505] AUTODETECT spr round 5 (radius: 25) [00:41:26 -4758.115976] SPR radius for FAST iterations: 25 (autodetect) [00:41:26 -4758.115976] Model parameter optimization (eps = 3.000000) [00:41:30 -4709.631387] FAST spr round 1 (radius: 25) [00:41:40 -4180.771809] FAST spr round 2 (radius: 25) [00:41:51 -4100.902183] FAST spr round 3 (radius: 25) [00:42:00 -4094.287319] FAST spr round 4 (radius: 25) [00:42:09 -4093.219823] FAST spr round 5 (radius: 25) [00:42:18 -4093.219715] Model parameter optimization (eps = 1.000000) [00:42:19 -4092.332879] SLOW spr round 1 (radius: 5) [00:42:32 -4091.794433] SLOW spr round 2 (radius: 5) [00:42:43 -4091.794230] SLOW spr round 3 (radius: 10) [00:42:54 -4091.637111] SLOW spr round 4 (radius: 5) [00:43:08 -4091.637105] SLOW spr round 5 (radius: 10) [00:43:20 -4088.992299] SLOW spr round 6 (radius: 5) [00:43:33 -4087.391770] SLOW spr round 7 (radius: 5) [00:43:45 -4087.391475] SLOW spr round 8 (radius: 10) [00:43:56 -4085.910334] SLOW spr round 9 (radius: 5) [00:44:10 -4085.066218] SLOW spr round 10 (radius: 5) [00:44:23 -4083.736566] SLOW spr round 11 (radius: 5) [00:44:34 -4083.736564] SLOW spr round 12 (radius: 10) [00:44:45 -4083.736564] SLOW spr round 13 (radius: 15) [00:45:00 -4082.100460] SLOW spr round 14 (radius: 5) [00:45:14 -4077.481781] SLOW spr round 15 (radius: 5) [00:45:27 -4077.481762] SLOW spr round 16 (radius: 10) [00:45:38 -4077.389427] SLOW spr round 17 (radius: 15) [00:45:53 -4069.661118] SLOW spr round 18 (radius: 5) [00:46:07 -4068.941340] SLOW spr round 19 (radius: 5) [00:46:19 -4068.941339] SLOW spr round 20 (radius: 10) [00:46:31 -4068.941339] SLOW spr round 21 (radius: 15) [00:46:46 -4068.382745] SLOW spr round 22 (radius: 5) [00:47:00 -4068.382715] SLOW spr round 23 (radius: 10) [00:47:12 -4068.382715] SLOW spr round 24 (radius: 15) [00:47:26 -4068.228002] SLOW spr round 25 (radius: 5) [00:47:40 -4068.228001] SLOW spr round 26 (radius: 10) [00:47:53 -4068.228001] SLOW spr round 27 (radius: 15) [00:48:07 -4068.207962] SLOW spr round 28 (radius: 20) [00:48:25 -4005.838650] SLOW spr round 29 (radius: 5) [00:48:40 -3959.199925] SLOW spr round 30 (radius: 5) [00:48:53 -3957.106471] SLOW spr round 31 (radius: 5) [00:49:05 -3957.105699] SLOW spr round 32 (radius: 10) [00:49:16 -3955.345735] SLOW spr round 33 (radius: 5) [00:49:29 -3955.345726] SLOW spr round 34 (radius: 10) [00:49:41 -3955.345726] SLOW spr round 35 (radius: 15) [00:49:55 -3955.345726] SLOW spr round 36 (radius: 20) [00:50:13 -3948.904217] SLOW spr round 37 (radius: 5) [00:50:28 -3933.810479] SLOW spr round 38 (radius: 5) [00:50:40 -3933.810421] SLOW spr round 39 (radius: 10) [00:50:51 -3916.467620] SLOW spr round 40 (radius: 5) [00:51:05 -3904.366896] SLOW spr round 41 (radius: 5) [00:51:17 -3904.366788] SLOW spr round 42 (radius: 10) [00:51:28 -3904.366788] SLOW spr round 43 (radius: 15) [00:51:43 -3904.366788] SLOW spr round 44 (radius: 20) [00:52:00 -3904.366788] SLOW spr round 45 (radius: 25) [00:52:17 -3904.366788] Model parameter optimization (eps = 0.100000) [00:52:19] ML tree search #4, logLikelihood: -3904.016630 [00:52:19 -12189.591932] Initial branch length optimization [00:52:19 -10034.026453] Model parameter optimization (eps = 10.000000) [00:52:24 -9740.580184] AUTODETECT spr round 1 (radius: 5) [00:52:33 -7364.671758] AUTODETECT spr round 2 (radius: 10) [00:52:43 -5935.480034] AUTODETECT spr round 3 (radius: 15) [00:52:56 -5060.234220] AUTODETECT spr round 4 (radius: 20) [00:53:10 -4914.863865] AUTODETECT spr round 5 (radius: 25) [00:53:24 -4671.938797] SPR radius for FAST iterations: 25 (autodetect) [00:53:24 -4671.938797] Model parameter optimization (eps = 3.000000) [00:53:29 -4663.954407] FAST spr round 1 (radius: 25) [00:53:40 -4095.408126] FAST spr round 2 (radius: 25) [00:53:49 -4026.586404] FAST spr round 3 (radius: 25) [00:53:58 -4018.357609] FAST spr round 4 (radius: 25) [00:54:07 -4018.340007] Model parameter optimization (eps = 1.000000) [00:54:09 -4018.083786] SLOW spr round 1 (radius: 5) [00:54:21 -4016.554065] SLOW spr round 2 (radius: 5) [00:54:33 -4016.553470] SLOW spr round 3 (radius: 10) [00:54:44 -4016.131088] SLOW spr round 4 (radius: 5) [00:54:58 -4011.711882] SLOW spr round 5 (radius: 5) [00:55:11 -4011.710578] SLOW spr round 6 (radius: 10) [00:55:22 -4011.522627] SLOW spr round 7 (radius: 5) [00:55:36 -4011.522356] SLOW spr round 8 (radius: 10) [00:55:48 -4010.713724] SLOW spr round 9 (radius: 5) [00:56:01 -4010.713599] SLOW spr round 10 (radius: 10) [00:56:13 -4010.713551] SLOW spr round 11 (radius: 15) [00:56:30 -3980.924003] SLOW spr round 12 (radius: 5) [00:56:45 -3963.685862] SLOW spr round 13 (radius: 5) [00:56:58 -3963.199660] SLOW spr round 14 (radius: 5) [00:57:09 -3958.838694] SLOW spr round 15 (radius: 5) [00:57:20 -3958.838658] SLOW spr round 16 (radius: 10) [00:57:31 -3958.113375] SLOW spr round 17 (radius: 5) [00:57:44 -3958.097893] SLOW spr round 18 (radius: 10) [00:57:56 -3958.097787] SLOW spr round 19 (radius: 15) [00:58:12 -3958.097787] SLOW spr round 20 (radius: 20) [00:58:32 -3952.958778] SLOW spr round 21 (radius: 5) [00:58:47 -3952.396155] SLOW spr round 22 (radius: 5) [00:59:00 -3952.376559] SLOW spr round 23 (radius: 10) [00:59:11 -3952.374637] SLOW spr round 24 (radius: 15) [00:59:27 -3950.589604] SLOW spr round 25 (radius: 5) [00:59:41 -3950.589573] SLOW spr round 26 (radius: 10) [00:59:54 -3950.589570] SLOW spr round 27 (radius: 15) [01:00:09 -3949.900407] SLOW spr round 28 (radius: 5) [01:00:23 -3949.900407] SLOW spr round 29 (radius: 10) [01:00:36 -3949.900407] SLOW spr round 30 (radius: 15) [01:00:51 -3949.900407] SLOW spr round 31 (radius: 20) [01:01:10 -3949.900407] SLOW spr round 32 (radius: 25) [01:01:30 -3935.956718] SLOW spr round 33 (radius: 5) [01:01:45 -3911.261483] SLOW spr round 34 (radius: 5) [01:01:58 -3909.712573] SLOW spr round 35 (radius: 5) [01:02:09 -3909.712498] SLOW spr round 36 (radius: 10) [01:02:20 -3909.712468] SLOW spr round 37 (radius: 15) [01:02:37 -3909.712453] SLOW spr round 38 (radius: 20) [01:02:56 -3909.633446] SLOW spr round 39 (radius: 25) [01:03:15 -3909.633446] Model parameter optimization (eps = 0.100000) [01:03:18] ML tree search #5, logLikelihood: -3908.583686 [01:03:18 -12091.143510] Initial branch length optimization [01:03:18 -9996.696175] Model parameter optimization (eps = 10.000000) [01:03:23 -9741.575459] AUTODETECT spr round 1 (radius: 5) [01:03:32 -7317.526435] AUTODETECT spr round 2 (radius: 10) [01:03:42 -5781.991517] AUTODETECT spr round 3 (radius: 15) [01:03:55 -5044.899739] AUTODETECT spr round 4 (radius: 20) [01:04:08 -4785.981742] AUTODETECT spr round 5 (radius: 25) [01:04:21 -4690.097531] SPR radius for FAST iterations: 25 (autodetect) [01:04:21 -4690.097531] Model parameter optimization (eps = 3.000000) [01:04:26 -4678.969463] FAST spr round 1 (radius: 25) [01:04:36 -4098.950537] FAST spr round 2 (radius: 25) [01:04:46 -4039.557480] FAST spr round 3 (radius: 25) [01:04:55 -4032.124483] FAST spr round 4 (radius: 25) [01:05:03 -4032.123721] Model parameter optimization (eps = 1.000000) [01:05:08 -4030.954891] SLOW spr round 1 (radius: 5) [01:05:20 -4029.698780] SLOW spr round 2 (radius: 5) [01:05:31 -4029.688901] SLOW spr round 3 (radius: 10) [01:05:42 -4026.234248] SLOW spr round 4 (radius: 5) [01:05:56 -4026.194565] SLOW spr round 5 (radius: 10) [01:06:08 -4025.707095] SLOW spr round 6 (radius: 5) [01:06:22 -4025.427434] SLOW spr round 7 (radius: 5) [01:06:34 -4024.223838] SLOW spr round 8 (radius: 5) [01:06:45 -4024.223662] SLOW spr round 9 (radius: 10) [01:06:55 -4024.223645] SLOW spr round 10 (radius: 15) [01:07:12 -3991.629596] SLOW spr round 11 (radius: 5) [01:07:26 -3975.719259] SLOW spr round 12 (radius: 5) [01:07:39 -3974.862229] SLOW spr round 13 (radius: 5) [01:07:50 -3974.862223] SLOW spr round 14 (radius: 10) [01:08:01 -3972.251979] SLOW spr round 15 (radius: 5) [01:08:15 -3972.052300] SLOW spr round 16 (radius: 5) [01:08:27 -3972.052260] SLOW spr round 17 (radius: 10) [01:08:38 -3972.052245] SLOW spr round 18 (radius: 15) [01:08:54 -3971.222377] SLOW spr round 19 (radius: 5) [01:09:08 -3971.208633] SLOW spr round 20 (radius: 10) [01:09:20 -3968.720555] SLOW spr round 21 (radius: 5) [01:09:34 -3967.365505] SLOW spr round 22 (radius: 5) [01:09:46 -3967.365152] SLOW spr round 23 (radius: 10) [01:09:57 -3966.916934] SLOW spr round 24 (radius: 5) [01:10:10 -3966.914664] SLOW spr round 25 (radius: 10) [01:10:22 -3966.914502] SLOW spr round 26 (radius: 15) [01:10:37 -3966.839855] SLOW spr round 27 (radius: 20) [01:10:54 -3963.997195] SLOW spr round 28 (radius: 5) [01:11:08 -3953.204847] SLOW spr round 29 (radius: 5) [01:11:21 -3948.702340] SLOW spr round 30 (radius: 5) [01:11:33 -3948.490024] SLOW spr round 31 (radius: 5) [01:11:44 -3948.489701] SLOW spr round 32 (radius: 10) [01:11:55 -3947.599985] SLOW spr round 33 (radius: 5) [01:12:09 -3946.993278] SLOW spr round 34 (radius: 5) [01:12:21 -3946.993228] SLOW spr round 35 (radius: 10) [01:12:32 -3946.993226] SLOW spr round 36 (radius: 15) [01:12:48 -3946.941507] SLOW spr round 37 (radius: 20) [01:13:05 -3942.486001] SLOW spr round 38 (radius: 5) [01:13:20 -3936.462637] SLOW spr round 39 (radius: 5) [01:13:33 -3936.135722] SLOW spr round 40 (radius: 5) [01:13:44 -3936.135721] SLOW spr round 41 (radius: 10) [01:13:55 -3936.135721] SLOW spr round 42 (radius: 15) [01:14:11 -3935.610480] SLOW spr round 43 (radius: 5) [01:14:25 -3935.593337] SLOW spr round 44 (radius: 10) [01:14:37 -3935.593296] SLOW spr round 45 (radius: 15) [01:14:52 -3935.579097] SLOW spr round 46 (radius: 20) [01:15:10 -3933.703609] SLOW spr round 47 (radius: 5) [01:15:25 -3922.517868] SLOW spr round 48 (radius: 5) [01:15:38 -3912.960016] SLOW spr round 49 (radius: 5) [01:15:50 -3912.133204] SLOW spr round 50 (radius: 5) [01:16:01 -3912.132453] SLOW spr round 51 (radius: 10) [01:16:11 -3912.132446] SLOW spr round 52 (radius: 15) [01:16:27 -3912.132445] SLOW spr round 53 (radius: 20) [01:16:44 -3912.132445] SLOW spr round 54 (radius: 25) [01:17:02 -3909.201425] SLOW spr round 55 (radius: 5) [01:17:17 -3890.020460] SLOW spr round 56 (radius: 5) [01:17:30 -3890.013445] SLOW spr round 57 (radius: 10) [01:17:41 -3888.766686] SLOW spr round 58 (radius: 5) [01:17:55 -3888.766356] SLOW spr round 59 (radius: 10) [01:18:07 -3886.847400] SLOW spr round 60 (radius: 5) [01:18:21 -3886.847282] SLOW spr round 61 (radius: 10) [01:18:33 -3886.847276] SLOW spr round 62 (radius: 15) [01:18:48 -3886.847273] SLOW spr round 63 (radius: 20) [01:19:05 -3886.847272] SLOW spr round 64 (radius: 25) [01:19:23 -3885.085136] SLOW spr round 65 (radius: 5) [01:19:38 -3885.085136] SLOW spr round 66 (radius: 10) [01:19:51 -3885.085136] SLOW spr round 67 (radius: 15) [01:20:06 -3885.085136] SLOW spr round 68 (radius: 20) [01:20:23 -3885.085135] SLOW spr round 69 (radius: 25) [01:20:42 -3885.085135] Model parameter optimization (eps = 0.100000) [01:20:45] ML tree search #6, logLikelihood: -3883.734035 [01:20:45 -12267.857918] Initial branch length optimization [01:20:45 -10129.027166] Model parameter optimization (eps = 10.000000) [01:20:50 -9840.626527] AUTODETECT spr round 1 (radius: 5) [01:20:59 -7369.737761] AUTODETECT spr round 2 (radius: 10) [01:21:12 -5864.409322] AUTODETECT spr round 3 (radius: 15) [01:21:25 -5000.082112] AUTODETECT spr round 4 (radius: 20) [01:21:39 -4750.998036] AUTODETECT spr round 5 (radius: 25) [01:21:54 -4645.798991] SPR radius for FAST iterations: 25 (autodetect) [01:21:54 -4645.798991] Model parameter optimization (eps = 3.000000) [01:21:59 -4639.824291] FAST spr round 1 (radius: 25) [01:22:09 -4079.991407] FAST spr round 2 (radius: 25) [01:22:18 -4003.381436] FAST spr round 3 (radius: 25) [01:22:28 -3989.185837] FAST spr round 4 (radius: 25) [01:22:37 -3988.200412] FAST spr round 5 (radius: 25) [01:22:45 -3988.090169] FAST spr round 6 (radius: 25) [01:22:54 -3988.089883] Model parameter optimization (eps = 1.000000) [01:22:58 -3986.976939] SLOW spr round 1 (radius: 5) [01:23:10 -3985.314119] SLOW spr round 2 (radius: 5) [01:23:21 -3985.313821] SLOW spr round 3 (radius: 10) [01:23:32 -3985.295380] SLOW spr round 4 (radius: 15) [01:23:48 -3984.591113] SLOW spr round 5 (radius: 5) [01:24:02 -3984.588473] SLOW spr round 6 (radius: 10) [01:24:14 -3984.088277] SLOW spr round 7 (radius: 5) [01:24:28 -3984.088263] SLOW spr round 8 (radius: 10) [01:24:40 -3984.088263] SLOW spr round 9 (radius: 15) [01:24:55 -3983.189109] SLOW spr round 10 (radius: 5) [01:25:09 -3983.147105] SLOW spr round 11 (radius: 10) [01:25:21 -3983.141795] SLOW spr round 12 (radius: 15) [01:25:37 -3983.141795] SLOW spr round 13 (radius: 20) [01:25:55 -3976.005198] SLOW spr round 14 (radius: 5) [01:26:11 -3958.302072] SLOW spr round 15 (radius: 5) [01:26:23 -3957.958028] SLOW spr round 16 (radius: 5) [01:26:35 -3957.957710] SLOW spr round 17 (radius: 10) [01:26:46 -3955.995891] SLOW spr round 18 (radius: 5) [01:27:00 -3955.995653] SLOW spr round 19 (radius: 10) [01:27:12 -3955.995645] SLOW spr round 20 (radius: 15) [01:27:27 -3952.804407] SLOW spr round 21 (radius: 5) [01:27:41 -3952.794641] SLOW spr round 22 (radius: 10) [01:27:53 -3952.462042] SLOW spr round 23 (radius: 5) [01:28:07 -3952.461969] SLOW spr round 24 (radius: 10) [01:28:18 -3952.461954] SLOW spr round 25 (radius: 15) [01:28:33 -3952.461946] SLOW spr round 26 (radius: 20) [01:28:51 -3952.150899] SLOW spr round 27 (radius: 5) [01:29:05 -3952.150739] SLOW spr round 28 (radius: 10) [01:29:18 -3952.150735] SLOW spr round 29 (radius: 15) [01:29:33 -3952.150733] SLOW spr round 30 (radius: 20) [01:29:50 -3952.150733] SLOW spr round 31 (radius: 25) [01:30:10 -3941.750293] SLOW spr round 32 (radius: 5) [01:30:25 -3925.738910] SLOW spr round 33 (radius: 5) [01:30:38 -3924.574141] SLOW spr round 34 (radius: 5) [01:30:49 -3924.574107] SLOW spr round 35 (radius: 10) [01:31:00 -3924.574092] SLOW spr round 36 (radius: 15) [01:31:16 -3924.574084] SLOW spr round 37 (radius: 20) [01:31:33 -3924.574080] SLOW spr round 38 (radius: 25) [01:31:52 -3924.570236] Model parameter optimization (eps = 0.100000) [01:31:54] ML tree search #7, logLikelihood: -3924.276609 [01:31:54 -12078.118704] Initial branch length optimization [01:31:55 -9910.076766] Model parameter optimization (eps = 10.000000) [01:32:00 -9685.535694] AUTODETECT spr round 1 (radius: 5) [01:32:09 -7052.564342] AUTODETECT spr round 2 (radius: 10) [01:32:20 -5484.875311] AUTODETECT spr round 3 (radius: 15) [01:32:33 -4573.529918] AUTODETECT spr round 4 (radius: 20) [01:32:47 -4396.328451] AUTODETECT spr round 5 (radius: 25) [01:33:01 -4344.261276] SPR radius for FAST iterations: 25 (autodetect) [01:33:01 -4344.261276] Model parameter optimization (eps = 3.000000) [01:33:06 -4336.729236] FAST spr round 1 (radius: 25) [01:33:16 -4046.998667] FAST spr round 2 (radius: 25) [01:33:26 -4004.189933] FAST spr round 3 (radius: 25) [01:33:36 -3979.233468] FAST spr round 4 (radius: 25) [01:33:45 -3977.006135] FAST spr round 5 (radius: 25) [01:33:53 -3976.234575] FAST spr round 6 (radius: 25) [01:34:02 -3976.234489] Model parameter optimization (eps = 1.000000) [01:34:08 -3974.913048] SLOW spr round 1 (radius: 5) [01:34:20 -3971.559000] SLOW spr round 2 (radius: 5) [01:34:31 -3971.557318] SLOW spr round 3 (radius: 10) [01:34:42 -3970.921253] SLOW spr round 4 (radius: 5) [01:34:56 -3970.921216] SLOW spr round 5 (radius: 10) [01:35:09 -3970.921216] SLOW spr round 6 (radius: 15) [01:35:23 -3969.192519] SLOW spr round 7 (radius: 5) [01:35:38 -3969.192508] SLOW spr round 8 (radius: 10) [01:35:50 -3969.192508] SLOW spr round 9 (radius: 15) [01:36:05 -3968.881868] SLOW spr round 10 (radius: 5) [01:36:19 -3968.881822] SLOW spr round 11 (radius: 10) [01:36:32 -3968.881822] SLOW spr round 12 (radius: 15) [01:36:46 -3968.881822] SLOW spr round 13 (radius: 20) [01:37:04 -3921.670442] SLOW spr round 14 (radius: 5) [01:37:19 -3918.532084] SLOW spr round 15 (radius: 5) [01:37:32 -3918.531578] SLOW spr round 16 (radius: 10) [01:37:44 -3912.242397] SLOW spr round 17 (radius: 5) [01:37:58 -3907.126232] SLOW spr round 18 (radius: 5) [01:38:09 -3907.126157] SLOW spr round 19 (radius: 10) [01:38:20 -3907.126147] SLOW spr round 20 (radius: 15) [01:38:37 -3905.867213] SLOW spr round 21 (radius: 5) [01:38:51 -3905.867208] SLOW spr round 22 (radius: 10) [01:39:03 -3905.867206] SLOW spr round 23 (radius: 15) [01:39:18 -3905.310362] SLOW spr round 24 (radius: 5) [01:39:32 -3903.855006] SLOW spr round 25 (radius: 5) [01:39:44 -3903.802728] SLOW spr round 26 (radius: 10) [01:39:56 -3903.725508] SLOW spr round 27 (radius: 15) [01:40:12 -3903.066713] SLOW spr round 28 (radius: 5) [01:40:26 -3901.958928] SLOW spr round 29 (radius: 5) [01:40:38 -3901.935965] SLOW spr round 30 (radius: 10) [01:40:50 -3901.934280] SLOW spr round 31 (radius: 15) [01:41:05 -3901.934177] SLOW spr round 32 (radius: 20) [01:41:24 -3897.176745] SLOW spr round 33 (radius: 5) [01:41:38 -3879.859604] SLOW spr round 34 (radius: 5) [01:41:51 -3879.859566] SLOW spr round 35 (radius: 10) [01:42:02 -3879.859566] SLOW spr round 36 (radius: 15) [01:42:18 -3879.859566] SLOW spr round 37 (radius: 20) [01:42:36 -3869.834425] SLOW spr round 38 (radius: 5) [01:42:51 -3868.720077] SLOW spr round 39 (radius: 5) [01:43:04 -3868.606667] SLOW spr round 40 (radius: 5) [01:43:15 -3868.605762] SLOW spr round 41 (radius: 10) [01:43:26 -3868.605735] SLOW spr round 42 (radius: 15) [01:43:42 -3868.605734] SLOW spr round 43 (radius: 20) [01:44:01 -3867.787211] SLOW spr round 44 (radius: 5) [01:44:16 -3867.776520] SLOW spr round 45 (radius: 10) [01:44:29 -3867.776501] SLOW spr round 46 (radius: 15) [01:44:44 -3867.776501] SLOW spr round 47 (radius: 20) [01:45:04 -3865.782726] SLOW spr round 48 (radius: 5) [01:45:19 -3863.650977] SLOW spr round 49 (radius: 5) [01:45:31 -3863.650972] SLOW spr round 50 (radius: 10) [01:45:43 -3863.650972] SLOW spr round 51 (radius: 15) [01:45:59 -3863.650972] SLOW spr round 52 (radius: 20) [01:46:17 -3863.650972] SLOW spr round 53 (radius: 25) [01:46:38 -3854.749442] SLOW spr round 54 (radius: 5) [01:46:53 -3839.716800] SLOW spr round 55 (radius: 5) [01:47:06 -3839.716708] SLOW spr round 56 (radius: 10) [01:47:17 -3839.716698] SLOW spr round 57 (radius: 15) [01:47:33 -3839.716697] SLOW spr round 58 (radius: 20) [01:47:51 -3839.716696] SLOW spr round 59 (radius: 25) [01:48:11 -3837.727618] SLOW spr round 60 (radius: 5) [01:48:26 -3837.056451] SLOW spr round 61 (radius: 5) [01:48:39 -3837.056439] SLOW spr round 62 (radius: 10) [01:48:50 -3834.578758] SLOW spr round 63 (radius: 5) [01:49:04 -3834.578739] SLOW spr round 64 (radius: 10) [01:49:16 -3834.578739] SLOW spr round 65 (radius: 15) [01:49:31 -3834.578739] SLOW spr round 66 (radius: 20) [01:49:48 -3834.578739] SLOW spr round 67 (radius: 25) [01:50:09 -3834.578720] Model parameter optimization (eps = 0.100000) [01:50:13] ML tree search #8, logLikelihood: -3834.065580 [01:50:13 -12181.082882] Initial branch length optimization [01:50:13 -9750.044218] Model parameter optimization (eps = 10.000000) [01:50:18 -9679.951111] AUTODETECT spr round 1 (radius: 5) [01:50:28 -7731.565208] AUTODETECT spr round 2 (radius: 10) [01:50:39 -6059.867926] AUTODETECT spr round 3 (radius: 15) [01:50:52 -5232.634871] AUTODETECT spr round 4 (radius: 20) [01:51:06 -4884.964788] AUTODETECT spr round 5 (radius: 25) [01:51:22 -4575.403440] SPR radius for FAST iterations: 25 (autodetect) [01:51:22 -4575.403440] Model parameter optimization (eps = 3.000000) [01:51:26 -4528.825363] FAST spr round 1 (radius: 25) [01:51:36 -3963.700771] FAST spr round 2 (radius: 25) [01:51:45 -3943.425412] FAST spr round 3 (radius: 25) [01:51:54 -3941.483823] FAST spr round 4 (radius: 25) [01:52:03 -3902.104530] FAST spr round 5 (radius: 25) [01:52:12 -3898.060877] FAST spr round 6 (radius: 25) [01:52:21 -3898.060610] Model parameter optimization (eps = 1.000000) [01:52:23 -3897.956859] SLOW spr round 1 (radius: 5) [01:52:35 -3895.089069] SLOW spr round 2 (radius: 5) [01:52:46 -3895.088889] SLOW spr round 3 (radius: 10) [01:52:57 -3894.980751] SLOW spr round 4 (radius: 5) [01:53:10 -3894.980742] SLOW spr round 5 (radius: 10) [01:53:22 -3894.980740] SLOW spr round 6 (radius: 15) [01:53:37 -3890.958170] SLOW spr round 7 (radius: 5) [01:53:52 -3883.314685] SLOW spr round 8 (radius: 5) [01:54:04 -3883.174692] SLOW spr round 9 (radius: 5) [01:54:15 -3883.174597] SLOW spr round 10 (radius: 10) [01:54:26 -3883.174594] SLOW spr round 11 (radius: 15) [01:54:42 -3881.612788] SLOW spr round 12 (radius: 5) [01:54:57 -3881.227435] SLOW spr round 13 (radius: 5) [01:55:09 -3881.226422] SLOW spr round 14 (radius: 10) [01:55:20 -3881.226366] SLOW spr round 15 (radius: 15) [01:55:36 -3880.630384] SLOW spr round 16 (radius: 5) [01:55:49 -3880.630381] SLOW spr round 17 (radius: 10) [01:56:01 -3880.630381] SLOW spr round 18 (radius: 15) [01:56:17 -3880.630381] SLOW spr round 19 (radius: 20) [01:56:35 -3879.862544] SLOW spr round 20 (radius: 5) [01:56:50 -3878.563923] SLOW spr round 21 (radius: 5) [01:57:03 -3877.931698] SLOW spr round 22 (radius: 5) [01:57:14 -3877.931286] SLOW spr round 23 (radius: 10) [01:57:25 -3871.993369] SLOW spr round 24 (radius: 5) [01:57:39 -3871.472952] SLOW spr round 25 (radius: 5) [01:57:52 -3869.164151] SLOW spr round 26 (radius: 5) [01:58:03 -3869.161712] SLOW spr round 27 (radius: 10) [01:58:14 -3869.161488] SLOW spr round 28 (radius: 15) [01:58:30 -3869.011747] SLOW spr round 29 (radius: 5) [01:58:45 -3868.271253] SLOW spr round 30 (radius: 5) [01:58:57 -3868.270872] SLOW spr round 31 (radius: 10) [01:59:08 -3868.270871] SLOW spr round 32 (radius: 15) [01:59:24 -3868.270871] SLOW spr round 33 (radius: 20) [01:59:41 -3868.120788] SLOW spr round 34 (radius: 5) [01:59:55 -3868.120787] SLOW spr round 35 (radius: 10) [02:00:07 -3868.120787] SLOW spr round 36 (radius: 15) [02:00:22 -3868.120787] SLOW spr round 37 (radius: 20) [02:00:39 -3868.120787] SLOW spr round 38 (radius: 25) [02:00:58 -3868.120787] Model parameter optimization (eps = 0.100000) [02:00:59] ML tree search #9, logLikelihood: -3867.709139 [02:00:59 -12127.304952] Initial branch length optimization [02:00:59 -9970.343368] Model parameter optimization (eps = 10.000000) [02:01:05 -9732.754332] AUTODETECT spr round 1 (radius: 5) [02:01:14 -7118.705117] AUTODETECT spr round 2 (radius: 10) [02:01:25 -5826.173704] AUTODETECT spr round 3 (radius: 15) [02:01:39 -5089.825573] AUTODETECT spr round 4 (radius: 20) [02:01:53 -4899.723070] AUTODETECT spr round 5 (radius: 25) [02:02:07 -4726.961595] SPR radius for FAST iterations: 25 (autodetect) [02:02:07 -4726.961595] Model parameter optimization (eps = 3.000000) [02:02:12 -4717.497394] FAST spr round 1 (radius: 25) [02:02:23 -4022.398000] FAST spr round 2 (radius: 25) [02:02:33 -3943.866631] FAST spr round 3 (radius: 25) [02:02:42 -3941.068303] FAST spr round 4 (radius: 25) [02:02:51 -3935.599845] FAST spr round 5 (radius: 25) [02:03:00 -3932.056814] FAST spr round 6 (radius: 25) [02:03:09 -3931.964480] Model parameter optimization (eps = 1.000000) [02:03:12 -3931.198754] SLOW spr round 1 (radius: 5) [02:03:25 -3930.587280] SLOW spr round 2 (radius: 5) [02:03:36 -3930.482874] SLOW spr round 3 (radius: 5) [02:03:47 -3930.482660] SLOW spr round 4 (radius: 10) [02:03:58 -3928.747025] SLOW spr round 5 (radius: 5) [02:04:12 -3928.747000] SLOW spr round 6 (radius: 10) [02:04:24 -3928.747000] SLOW spr round 7 (radius: 15) [02:04:40 -3928.325371] SLOW spr round 8 (radius: 5) [02:04:55 -3928.325339] SLOW spr round 9 (radius: 10) [02:05:07 -3928.325339] SLOW spr round 10 (radius: 15) [02:05:23 -3928.325338] SLOW spr round 11 (radius: 20) [02:05:42 -3926.428673] SLOW spr round 12 (radius: 5) [02:05:56 -3926.428671] SLOW spr round 13 (radius: 10) [02:06:09 -3926.428671] SLOW spr round 14 (radius: 15) [02:06:25 -3926.428671] SLOW spr round 15 (radius: 20) [02:06:43 -3924.859170] SLOW spr round 16 (radius: 5) [02:06:58 -3924.857663] SLOW spr round 17 (radius: 10) [02:07:12 -3897.486889] SLOW spr round 18 (radius: 5) [02:07:26 -3893.722430] SLOW spr round 19 (radius: 5) [02:07:38 -3893.722135] SLOW spr round 20 (radius: 10) [02:07:49 -3893.590246] SLOW spr round 21 (radius: 5) [02:08:03 -3892.137554] SLOW spr round 22 (radius: 5) [02:08:15 -3892.137546] SLOW spr round 23 (radius: 10) [02:08:26 -3892.137546] SLOW spr round 24 (radius: 15) [02:08:43 -3891.553100] SLOW spr round 25 (radius: 5) [02:08:57 -3889.805212] SLOW spr round 26 (radius: 5) [02:09:09 -3889.805212] SLOW spr round 27 (radius: 10) [02:09:21 -3889.805212] SLOW spr round 28 (radius: 15) [02:09:37 -3889.805212] SLOW spr round 29 (radius: 20) [02:09:55 -3889.805212] SLOW spr round 30 (radius: 25) [02:10:15 -3887.665982] SLOW spr round 31 (radius: 5) [02:10:30 -3887.665979] SLOW spr round 32 (radius: 10) [02:10:43 -3887.665979] SLOW spr round 33 (radius: 15) [02:10:58 -3887.665979] SLOW spr round 34 (radius: 20) [02:11:17 -3887.665979] SLOW spr round 35 (radius: 25) [02:11:36 -3887.665979] Model parameter optimization (eps = 0.100000) [02:11:40] ML tree search #10, logLikelihood: -3887.419743 [02:11:40 -12161.268588] Initial branch length optimization [02:11:40 -10023.804968] Model parameter optimization (eps = 10.000000) [02:11:48 -9781.916614] AUTODETECT spr round 1 (radius: 5) [02:11:56 -7256.363449] AUTODETECT spr round 2 (radius: 10) [02:12:07 -5882.237737] AUTODETECT spr round 3 (radius: 15) [02:12:19 -5242.460903] AUTODETECT spr round 4 (radius: 20) [02:12:34 -4629.182480] AUTODETECT spr round 5 (radius: 25) [02:12:50 -4546.948260] SPR radius for FAST iterations: 25 (autodetect) [02:12:50 -4546.948260] Model parameter optimization (eps = 3.000000) [02:12:55 -4540.809940] FAST spr round 1 (radius: 25) [02:13:05 -4015.323615] FAST spr round 2 (radius: 25) [02:13:15 -3970.170018] FAST spr round 3 (radius: 25) [02:13:24 -3908.750916] FAST spr round 4 (radius: 25) [02:13:33 -3886.567171] FAST spr round 5 (radius: 25) [02:13:42 -3886.566879] Model parameter optimization (eps = 1.000000) [02:13:46 -3885.243739] SLOW spr round 1 (radius: 5) [02:13:58 -3884.084585] SLOW spr round 2 (radius: 5) [02:14:09 -3884.082900] SLOW spr round 3 (radius: 10) [02:14:20 -3882.668388] SLOW spr round 4 (radius: 5) [02:14:34 -3882.654734] SLOW spr round 5 (radius: 10) [02:14:46 -3882.654669] SLOW spr round 6 (radius: 15) [02:15:01 -3879.040181] SLOW spr round 7 (radius: 5) [02:15:16 -3878.885155] SLOW spr round 8 (radius: 5) [02:15:28 -3878.884927] SLOW spr round 9 (radius: 10) [02:15:40 -3876.754597] SLOW spr round 10 (radius: 5) [02:15:54 -3876.753277] SLOW spr round 11 (radius: 10) [02:16:06 -3876.320808] SLOW spr round 12 (radius: 5) [02:16:19 -3876.320731] SLOW spr round 13 (radius: 10) [02:16:31 -3876.320713] SLOW spr round 14 (radius: 15) [02:16:47 -3876.320699] SLOW spr round 15 (radius: 20) [02:17:05 -3870.769019] SLOW spr round 16 (radius: 5) [02:17:20 -3869.610185] SLOW spr round 17 (radius: 5) [02:17:33 -3869.610134] SLOW spr round 18 (radius: 10) [02:17:44 -3869.610118] SLOW spr round 19 (radius: 15) [02:18:00 -3869.610105] SLOW spr round 20 (radius: 20) [02:18:18 -3869.610092] SLOW spr round 21 (radius: 25) [02:18:37 -3866.600759] SLOW spr round 22 (radius: 5) [02:18:52 -3865.262117] SLOW spr round 23 (radius: 5) [02:19:05 -3864.170963] SLOW spr round 24 (radius: 5) [02:19:16 -3864.170881] SLOW spr round 25 (radius: 10) [02:19:27 -3864.170864] SLOW spr round 26 (radius: 15) [02:19:43 -3864.101533] SLOW spr round 27 (radius: 20) [02:20:02 -3861.992382] SLOW spr round 28 (radius: 5) [02:20:17 -3861.200643] SLOW spr round 29 (radius: 5) [02:20:30 -3861.198521] SLOW spr round 30 (radius: 10) [02:20:41 -3861.198307] SLOW spr round 31 (radius: 15) [02:20:57 -3860.644645] SLOW spr round 32 (radius: 5) [02:21:11 -3860.448836] SLOW spr round 33 (radius: 5) [02:21:23 -3860.448550] SLOW spr round 34 (radius: 10) [02:21:34 -3859.879357] SLOW spr round 35 (radius: 5) [02:21:47 -3859.879316] SLOW spr round 36 (radius: 10) [02:21:59 -3859.879300] SLOW spr round 37 (radius: 15) [02:22:15 -3859.553904] SLOW spr round 38 (radius: 5) [02:22:29 -3859.394297] SLOW spr round 39 (radius: 5) [02:22:41 -3859.394173] SLOW spr round 40 (radius: 10) [02:22:52 -3859.394155] SLOW spr round 41 (radius: 15) [02:23:08 -3859.394142] SLOW spr round 42 (radius: 20) [02:23:27 -3859.274709] SLOW spr round 43 (radius: 5) [02:23:41 -3859.274678] SLOW spr round 44 (radius: 10) [02:23:54 -3859.274664] SLOW spr round 45 (radius: 15) [02:24:09 -3858.753804] SLOW spr round 46 (radius: 5) [02:24:23 -3858.161084] SLOW spr round 47 (radius: 5) [02:24:36 -3858.160667] SLOW spr round 48 (radius: 10) [02:24:47 -3858.160606] SLOW spr round 49 (radius: 15) [02:25:04 -3858.160584] SLOW spr round 50 (radius: 20) [02:25:22 -3858.016306] SLOW spr round 51 (radius: 5) [02:25:37 -3858.016289] SLOW spr round 52 (radius: 10) [02:25:50 -3858.016273] SLOW spr round 53 (radius: 15) [02:26:05 -3858.016257] SLOW spr round 54 (radius: 20) [02:26:24 -3858.016241] SLOW spr round 55 (radius: 25) [02:26:43 -3858.016225] Model parameter optimization (eps = 0.100000) [02:26:50] ML tree search #11, logLikelihood: -3856.068932 [02:26:50 -12127.710683] Initial branch length optimization [02:26:50 -9661.658835] Model parameter optimization (eps = 10.000000) [02:26:54 -9605.643135] AUTODETECT spr round 1 (radius: 5) [02:27:03 -7618.465884] AUTODETECT spr round 2 (radius: 10) [02:27:14 -6143.976219] AUTODETECT spr round 3 (radius: 15) [02:27:27 -5152.750086] AUTODETECT spr round 4 (radius: 20) [02:27:40 -4958.385283] AUTODETECT spr round 5 (radius: 25) [02:27:55 -4845.585399] SPR radius for FAST iterations: 25 (autodetect) [02:27:55 -4845.585399] Model parameter optimization (eps = 3.000000) [02:28:00 -4794.619697] FAST spr round 1 (radius: 25) [02:28:11 -4234.676985] FAST spr round 2 (radius: 25) [02:28:20 -4191.005716] FAST spr round 3 (radius: 25) [02:28:30 -4161.183744] FAST spr round 4 (radius: 25) [02:28:38 -4161.183196] Model parameter optimization (eps = 1.000000) [02:28:42 -4156.829676] SLOW spr round 1 (radius: 5) [02:28:55 -4156.253722] SLOW spr round 2 (radius: 5) [02:29:06 -4156.253633] SLOW spr round 3 (radius: 10) [02:29:17 -4147.037168] SLOW spr round 4 (radius: 5) [02:29:32 -4145.009302] SLOW spr round 5 (radius: 5) [02:29:44 -4145.009284] SLOW spr round 6 (radius: 10) [02:29:55 -4144.985824] SLOW spr round 7 (radius: 15) [02:30:11 -4141.477156] SLOW spr round 8 (radius: 5) [02:30:26 -4140.929263] SLOW spr round 9 (radius: 5) [02:30:38 -4140.929145] SLOW spr round 10 (radius: 10) [02:30:49 -4140.929144] SLOW spr round 11 (radius: 15) [02:31:05 -4139.311606] SLOW spr round 12 (radius: 5) [02:31:19 -4139.267871] SLOW spr round 13 (radius: 10) [02:31:31 -4138.604679] SLOW spr round 14 (radius: 5) [02:31:45 -4138.603493] SLOW spr round 15 (radius: 10) [02:31:57 -4138.603466] SLOW spr round 16 (radius: 15) [02:32:12 -4137.852756] SLOW spr round 17 (radius: 5) [02:32:26 -4137.245104] SLOW spr round 18 (radius: 5) [02:32:39 -4137.245100] SLOW spr round 19 (radius: 10) [02:32:50 -4136.700865] SLOW spr round 20 (radius: 5) [02:33:04 -4136.700202] SLOW spr round 21 (radius: 10) [02:33:16 -4136.700202] SLOW spr round 22 (radius: 15) [02:33:31 -4136.017838] SLOW spr round 23 (radius: 5) [02:33:45 -4136.017657] SLOW spr round 24 (radius: 10) [02:33:57 -4136.017656] SLOW spr round 25 (radius: 15) [02:34:12 -4136.017656] SLOW spr round 26 (radius: 20) [02:34:31 -4094.609802] SLOW spr round 27 (radius: 5) [02:34:47 -3999.948203] SLOW spr round 28 (radius: 5) [02:35:00 -3947.136239] SLOW spr round 29 (radius: 5) [02:35:12 -3945.374128] SLOW spr round 30 (radius: 5) [02:35:22 -3944.605171] SLOW spr round 31 (radius: 5) [02:35:33 -3944.604682] SLOW spr round 32 (radius: 10) [02:35:44 -3942.290230] SLOW spr round 33 (radius: 5) [02:35:58 -3942.150669] SLOW spr round 34 (radius: 5) [02:36:10 -3942.150549] SLOW spr round 35 (radius: 10) [02:36:21 -3941.410487] SLOW spr round 36 (radius: 5) [02:36:35 -3938.612663] SLOW spr round 37 (radius: 5) [02:36:47 -3938.460170] SLOW spr round 38 (radius: 5) [02:36:58 -3938.460152] SLOW spr round 39 (radius: 10) [02:37:09 -3938.460151] SLOW spr round 40 (radius: 15) [02:37:25 -3938.359116] SLOW spr round 41 (radius: 5) [02:37:39 -3938.359089] SLOW spr round 42 (radius: 10) [02:37:52 -3938.359089] SLOW spr round 43 (radius: 15) [02:38:07 -3938.327633] SLOW spr round 44 (radius: 20) [02:38:25 -3938.327395] SLOW spr round 45 (radius: 25) [02:38:44 -3938.327381] Model parameter optimization (eps = 0.100000) [02:38:46] ML tree search #12, logLikelihood: -3937.780079 [02:38:46 -12135.826343] Initial branch length optimization [02:38:46 -10025.612938] Model parameter optimization (eps = 10.000000) [02:38:51 -9787.948142] AUTODETECT spr round 1 (radius: 5) [02:39:00 -6982.769590] AUTODETECT spr round 2 (radius: 10) [02:39:10 -5504.255770] AUTODETECT spr round 3 (radius: 15) [02:39:23 -4976.167214] AUTODETECT spr round 4 (radius: 20) [02:39:36 -4622.899365] AUTODETECT spr round 5 (radius: 25) [02:39:49 -4527.264878] SPR radius for FAST iterations: 25 (autodetect) [02:39:49 -4527.264878] Model parameter optimization (eps = 3.000000) [02:39:54 -4514.561022] FAST spr round 1 (radius: 25) [02:40:04 -4023.268976] FAST spr round 2 (radius: 25) [02:40:14 -3984.272758] FAST spr round 3 (radius: 25) [02:40:23 -3957.357555] FAST spr round 4 (radius: 25) [02:40:33 -3950.282036] FAST spr round 5 (radius: 25) [02:40:41 -3949.809303] FAST spr round 6 (radius: 25) [02:40:50 -3949.809260] Model parameter optimization (eps = 1.000000) [02:40:54 -3948.538985] SLOW spr round 1 (radius: 5) [02:41:07 -3948.025489] SLOW spr round 2 (radius: 5) [02:41:18 -3948.024619] SLOW spr round 3 (radius: 10) [02:41:29 -3946.321036] SLOW spr round 4 (radius: 5) [02:41:43 -3945.146624] SLOW spr round 5 (radius: 5) [02:41:55 -3945.146491] SLOW spr round 6 (radius: 10) [02:42:06 -3944.851923] SLOW spr round 7 (radius: 5) [02:42:20 -3944.851908] SLOW spr round 8 (radius: 10) [02:42:32 -3944.851907] SLOW spr round 9 (radius: 15) [02:42:47 -3941.393132] SLOW spr round 10 (radius: 5) [02:43:01 -3941.391442] SLOW spr round 11 (radius: 10) [02:43:14 -3941.165598] SLOW spr round 12 (radius: 5) [02:43:27 -3941.165571] SLOW spr round 13 (radius: 10) [02:43:39 -3941.165565] SLOW spr round 14 (radius: 15) [02:43:54 -3941.154985] SLOW spr round 15 (radius: 20) [02:44:12 -3937.445525] SLOW spr round 16 (radius: 5) [02:44:27 -3937.445048] SLOW spr round 17 (radius: 10) [02:44:39 -3937.445022] SLOW spr round 18 (radius: 15) [02:44:55 -3933.470537] SLOW spr round 19 (radius: 5) [02:45:09 -3932.965912] SLOW spr round 20 (radius: 5) [02:45:21 -3932.965587] SLOW spr round 21 (radius: 10) [02:45:33 -3932.965481] SLOW spr round 22 (radius: 15) [02:45:49 -3931.419152] SLOW spr round 23 (radius: 5) [02:46:03 -3930.735890] SLOW spr round 24 (radius: 5) [02:46:15 -3930.735866] SLOW spr round 25 (radius: 10) [02:46:26 -3930.735865] SLOW spr round 26 (radius: 15) [02:46:42 -3930.735865] SLOW spr round 27 (radius: 20) [02:47:01 -3930.735865] SLOW spr round 28 (radius: 25) [02:47:21 -3930.127380] SLOW spr round 29 (radius: 5) [02:47:35 -3930.127295] SLOW spr round 30 (radius: 10) [02:47:48 -3930.127278] SLOW spr round 31 (radius: 15) [02:48:03 -3930.127272] SLOW spr round 32 (radius: 20) [02:48:22 -3930.127269] SLOW spr round 33 (radius: 25) [02:48:42 -3930.127267] Model parameter optimization (eps = 0.100000) [02:48:45] ML tree search #13, logLikelihood: -3929.159750 [02:48:45 -12236.489494] Initial branch length optimization [02:48:45 -10008.009312] Model parameter optimization (eps = 10.000000) [02:48:50 -9767.813610] AUTODETECT spr round 1 (radius: 5) [02:48:59 -7294.339069] AUTODETECT spr round 2 (radius: 10) [02:49:09 -6019.855928] AUTODETECT spr round 3 (radius: 15) [02:49:21 -5163.470576] AUTODETECT spr round 4 (radius: 20) [02:49:35 -4683.206695] AUTODETECT spr round 5 (radius: 25) [02:49:49 -4669.196923] SPR radius for FAST iterations: 25 (autodetect) [02:49:49 -4669.196923] Model parameter optimization (eps = 3.000000) [02:49:53 -4662.762422] FAST spr round 1 (radius: 25) [02:50:04 -4092.291874] FAST spr round 2 (radius: 25) [02:50:13 -4009.617886] FAST spr round 3 (radius: 25) [02:50:23 -3997.330546] FAST spr round 4 (radius: 25) [02:50:31 -3996.216027] FAST spr round 5 (radius: 25) [02:50:40 -3996.215830] Model parameter optimization (eps = 1.000000) [02:50:42 -3995.422446] SLOW spr round 1 (radius: 5) [02:50:53 -3993.459059] SLOW spr round 2 (radius: 5) [02:51:05 -3993.336854] SLOW spr round 3 (radius: 5) [02:51:15 -3993.336500] SLOW spr round 4 (radius: 10) [02:51:26 -3990.720952] SLOW spr round 5 (radius: 5) [02:51:40 -3987.398168] SLOW spr round 6 (radius: 5) [02:51:52 -3987.398161] SLOW spr round 7 (radius: 10) [02:52:03 -3987.319817] SLOW spr round 8 (radius: 15) [02:52:21 -3952.840212] SLOW spr round 9 (radius: 5) [02:52:36 -3947.926469] SLOW spr round 10 (radius: 5) [02:52:48 -3947.925999] SLOW spr round 11 (radius: 10) [02:53:00 -3946.075266] SLOW spr round 12 (radius: 5) [02:53:14 -3941.685055] SLOW spr round 13 (radius: 5) [02:53:26 -3941.685050] SLOW spr round 14 (radius: 10) [02:53:36 -3941.685050] SLOW spr round 15 (radius: 15) [02:53:54 -3939.785483] SLOW spr round 16 (radius: 5) [02:54:08 -3908.346950] SLOW spr round 17 (radius: 5) [02:54:21 -3903.909621] SLOW spr round 18 (radius: 5) [02:54:33 -3901.067453] SLOW spr round 19 (radius: 5) [02:54:43 -3900.656963] SLOW spr round 20 (radius: 5) [02:54:54 -3900.656815] SLOW spr round 21 (radius: 10) [02:55:04 -3899.657243] SLOW spr round 22 (radius: 5) [02:55:18 -3899.657208] SLOW spr round 23 (radius: 10) [02:55:30 -3897.748465] SLOW spr round 24 (radius: 5) [02:55:44 -3896.012557] SLOW spr round 25 (radius: 5) [02:55:56 -3896.012413] SLOW spr round 26 (radius: 10) [02:56:07 -3896.012394] SLOW spr round 27 (radius: 15) [02:56:24 -3895.792413] SLOW spr round 28 (radius: 5) [02:56:38 -3895.792390] SLOW spr round 29 (radius: 10) [02:56:50 -3895.792378] SLOW spr round 30 (radius: 15) [02:57:05 -3895.792369] SLOW spr round 31 (radius: 20) [02:57:25 -3895.188230] SLOW spr round 32 (radius: 5) [02:57:39 -3895.188222] SLOW spr round 33 (radius: 10) [02:57:52 -3895.188215] SLOW spr round 34 (radius: 15) [02:58:07 -3895.188210] SLOW spr round 35 (radius: 20) [02:58:26 -3895.188206] SLOW spr round 36 (radius: 25) [02:58:47 -3894.713810] SLOW spr round 37 (radius: 5) [02:59:02 -3894.317880] SLOW spr round 38 (radius: 5) [02:59:15 -3894.312777] SLOW spr round 39 (radius: 10) [02:59:26 -3894.312758] SLOW spr round 40 (radius: 15) [02:59:42 -3892.542511] SLOW spr round 41 (radius: 5) [02:59:56 -3892.542469] SLOW spr round 42 (radius: 10) [03:00:08 -3892.542467] SLOW spr round 43 (radius: 15) [03:00:24 -3892.542467] SLOW spr round 44 (radius: 20) [03:00:42 -3892.542467] SLOW spr round 45 (radius: 25) [03:01:02 -3892.529523] Model parameter optimization (eps = 0.100000) [03:01:06] ML tree search #14, logLikelihood: -3888.567217 [03:01:06 -12213.567587] Initial branch length optimization [03:01:07 -9919.996853] Model parameter optimization (eps = 10.000000) [03:01:11 -9839.494918] AUTODETECT spr round 1 (radius: 5) [03:01:20 -7541.963110] AUTODETECT spr round 2 (radius: 10) [03:01:30 -6122.287826] AUTODETECT spr round 3 (radius: 15) [03:01:43 -5299.292872] AUTODETECT spr round 4 (radius: 20) [03:01:57 -4723.731829] AUTODETECT spr round 5 (radius: 25) [03:02:11 -4621.151668] SPR radius for FAST iterations: 25 (autodetect) [03:02:11 -4621.151668] Model parameter optimization (eps = 3.000000) [03:02:17 -4572.863452] FAST spr round 1 (radius: 25) [03:02:28 -3963.248289] FAST spr round 2 (radius: 25) [03:02:38 -3878.228173] FAST spr round 3 (radius: 25) [03:02:47 -3867.164404] FAST spr round 4 (radius: 25) [03:02:56 -3865.694817] FAST spr round 5 (radius: 25) [03:03:05 -3865.692180] Model parameter optimization (eps = 1.000000) [03:03:09 -3863.340802] SLOW spr round 1 (radius: 5) [03:03:21 -3862.382075] SLOW spr round 2 (radius: 5) [03:03:32 -3861.813916] SLOW spr round 3 (radius: 5) [03:03:43 -3861.813741] SLOW spr round 4 (radius: 10) [03:03:54 -3861.575094] SLOW spr round 5 (radius: 5) [03:04:07 -3861.575070] SLOW spr round 6 (radius: 10) [03:04:20 -3858.313854] SLOW spr round 7 (radius: 5) [03:04:33 -3858.313834] SLOW spr round 8 (radius: 10) [03:04:45 -3858.313834] SLOW spr round 9 (radius: 15) [03:05:00 -3857.335076] SLOW spr round 10 (radius: 5) [03:05:14 -3857.326183] SLOW spr round 11 (radius: 10) [03:05:26 -3857.326147] SLOW spr round 12 (radius: 15) [03:05:41 -3857.326146] SLOW spr round 13 (radius: 20) [03:05:58 -3856.266138] SLOW spr round 14 (radius: 5) [03:06:12 -3855.961943] SLOW spr round 15 (radius: 5) [03:06:25 -3855.961939] SLOW spr round 16 (radius: 10) [03:06:35 -3855.961939] SLOW spr round 17 (radius: 15) [03:06:51 -3855.961939] SLOW spr round 18 (radius: 20) [03:07:07 -3855.961939] SLOW spr round 19 (radius: 25) [03:07:26 -3844.020946] SLOW spr round 20 (radius: 5) [03:07:40 -3839.377300] SLOW spr round 21 (radius: 5) [03:07:53 -3839.330362] SLOW spr round 22 (radius: 10) [03:08:04 -3839.329260] SLOW spr round 23 (radius: 15) [03:08:19 -3839.328736] SLOW spr round 24 (radius: 20) [03:08:36 -3838.633643] SLOW spr round 25 (radius: 5) [03:08:50 -3838.633567] SLOW spr round 26 (radius: 10) [03:09:03 -3838.633566] SLOW spr round 27 (radius: 15) [03:09:18 -3837.634776] SLOW spr round 28 (radius: 5) [03:09:32 -3837.634679] SLOW spr round 29 (radius: 10) [03:09:44 -3837.634678] SLOW spr round 30 (radius: 15) [03:09:59 -3837.634678] SLOW spr round 31 (radius: 20) [03:10:16 -3837.634678] SLOW spr round 32 (radius: 25) [03:10:36 -3837.267000] SLOW spr round 33 (radius: 5) [03:10:51 -3837.266487] SLOW spr round 34 (radius: 10) [03:11:04 -3832.026306] SLOW spr round 35 (radius: 5) [03:11:18 -3831.416453] SLOW spr round 36 (radius: 5) [03:11:30 -3831.416443] SLOW spr round 37 (radius: 10) [03:11:41 -3829.938387] SLOW spr round 38 (radius: 5) [03:11:55 -3829.938372] SLOW spr round 39 (radius: 10) [03:12:08 -3829.938372] SLOW spr round 40 (radius: 15) [03:12:23 -3829.938372] SLOW spr round 41 (radius: 20) [03:12:41 -3829.077518] SLOW spr round 42 (radius: 5) [03:12:56 -3829.047527] SLOW spr round 43 (radius: 10) [03:13:09 -3829.047515] SLOW spr round 44 (radius: 15) [03:13:24 -3829.047515] SLOW spr round 45 (radius: 20) [03:13:43 -3829.047515] SLOW spr round 46 (radius: 25) [03:14:03 -3829.010867] Model parameter optimization (eps = 0.100000) [03:14:05] ML tree search #15, logLikelihood: -3829.002011 [03:14:05 -12311.469070] Initial branch length optimization [03:14:05 -10153.742386] Model parameter optimization (eps = 10.000000) [03:14:12 -9864.222969] AUTODETECT spr round 1 (radius: 5) [03:14:21 -7477.984398] AUTODETECT spr round 2 (radius: 10) [03:14:33 -5915.801865] AUTODETECT spr round 3 (radius: 15) [03:14:45 -5245.140943] AUTODETECT spr round 4 (radius: 20) [03:15:02 -4825.804911] AUTODETECT spr round 5 (radius: 25) [03:15:19 -4654.131912] SPR radius for FAST iterations: 25 (autodetect) [03:15:19 -4654.131912] Model parameter optimization (eps = 3.000000) [03:15:24 -4646.036524] FAST spr round 1 (radius: 25) [03:15:35 -4115.727424] FAST spr round 2 (radius: 25) [03:15:46 -4048.625722] FAST spr round 3 (radius: 25) [03:15:55 -4036.248586] FAST spr round 4 (radius: 25) [03:16:04 -4036.248367] Model parameter optimization (eps = 1.000000) [03:16:08 -4033.941842] SLOW spr round 1 (radius: 5) [03:16:21 -4032.887260] SLOW spr round 2 (radius: 5) [03:16:32 -4032.814866] SLOW spr round 3 (radius: 10) [03:16:43 -4029.197718] SLOW spr round 4 (radius: 5) [03:16:58 -4022.264238] SLOW spr round 5 (radius: 5) [03:17:10 -4022.263686] SLOW spr round 6 (radius: 10) [03:17:21 -4021.942290] SLOW spr round 7 (radius: 5) [03:17:35 -4021.941905] SLOW spr round 8 (radius: 10) [03:17:47 -4021.941559] SLOW spr round 9 (radius: 15) [03:18:01 -4018.814703] SLOW spr round 10 (radius: 5) [03:18:16 -4018.813827] SLOW spr round 11 (radius: 10) [03:18:28 -4018.813805] SLOW spr round 12 (radius: 15) [03:18:42 -4018.813788] SLOW spr round 13 (radius: 20) [03:18:59 -4008.426288] SLOW spr round 14 (radius: 5) [03:19:15 -4003.680780] SLOW spr round 15 (radius: 5) [03:19:28 -4001.390242] SLOW spr round 16 (radius: 5) [03:19:39 -4001.390204] SLOW spr round 17 (radius: 10) [03:19:50 -4001.390193] SLOW spr round 18 (radius: 15) [03:20:05 -4001.390182] SLOW spr round 19 (radius: 20) [03:20:21 -4000.912586] SLOW spr round 20 (radius: 5) [03:20:36 -4000.189278] SLOW spr round 21 (radius: 5) [03:20:49 -4000.189262] SLOW spr round 22 (radius: 10) [03:21:00 -4000.189251] SLOW spr round 23 (radius: 15) [03:21:14 -4000.189240] SLOW spr round 24 (radius: 20) [03:21:31 -4000.165101] SLOW spr round 25 (radius: 25) [03:21:49 -3999.664698] SLOW spr round 26 (radius: 5) [03:22:04 -3999.552072] SLOW spr round 27 (radius: 5) [03:22:17 -3999.550520] SLOW spr round 28 (radius: 10) [03:22:29 -3999.550038] SLOW spr round 29 (radius: 15) [03:22:44 -3999.549872] SLOW spr round 30 (radius: 20) [03:23:01 -3999.397664] SLOW spr round 31 (radius: 5) [03:23:15 -3999.376330] SLOW spr round 32 (radius: 10) [03:23:28 -3999.375210] SLOW spr round 33 (radius: 15) [03:23:42 -3999.375161] SLOW spr round 34 (radius: 20) [03:23:59 -3999.375149] SLOW spr round 35 (radius: 25) [03:24:18 -3999.375138] Model parameter optimization (eps = 0.100000) [03:24:22] ML tree search #16, logLikelihood: -3997.222964 [03:24:22 -12258.531813] Initial branch length optimization [03:24:22 -10020.109800] Model parameter optimization (eps = 10.000000) [03:24:28 -9779.620369] AUTODETECT spr round 1 (radius: 5) [03:24:37 -7216.119054] AUTODETECT spr round 2 (radius: 10) [03:24:48 -5371.728624] AUTODETECT spr round 3 (radius: 15) [03:25:00 -4622.305152] AUTODETECT spr round 4 (radius: 20) [03:25:13 -4497.684176] AUTODETECT spr round 5 (radius: 25) [03:25:26 -4442.275599] SPR radius for FAST iterations: 25 (autodetect) [03:25:26 -4442.275599] Model parameter optimization (eps = 3.000000) [03:25:31 -4436.935853] FAST spr round 1 (radius: 25) [03:25:40 -3977.017709] FAST spr round 2 (radius: 25) [03:25:50 -3922.911478] FAST spr round 3 (radius: 25) [03:25:59 -3916.926826] FAST spr round 4 (radius: 25) [03:26:08 -3915.921251] FAST spr round 5 (radius: 25) [03:26:17 -3915.791577] FAST spr round 6 (radius: 25) [03:26:26 -3915.754817] Model parameter optimization (eps = 1.000000) [03:26:30 -3913.123394] SLOW spr round 1 (radius: 5) [03:26:43 -3912.440828] SLOW spr round 2 (radius: 5) [03:26:55 -3912.439444] SLOW spr round 3 (radius: 10) [03:27:06 -3910.532760] SLOW spr round 4 (radius: 5) [03:27:20 -3908.056589] SLOW spr round 5 (radius: 5) [03:27:33 -3907.641635] SLOW spr round 6 (radius: 5) [03:27:44 -3907.641379] SLOW spr round 7 (radius: 10) [03:27:55 -3906.119286] SLOW spr round 8 (radius: 5) [03:28:10 -3904.986685] SLOW spr round 9 (radius: 5) [03:28:22 -3904.958715] SLOW spr round 10 (radius: 10) [03:28:33 -3904.691863] SLOW spr round 11 (radius: 5) [03:28:47 -3903.620604] SLOW spr round 12 (radius: 5) [03:28:59 -3903.620584] SLOW spr round 13 (radius: 10) [03:29:10 -3903.620582] SLOW spr round 14 (radius: 15) [03:29:26 -3902.200175] SLOW spr round 15 (radius: 5) [03:29:41 -3902.173990] SLOW spr round 16 (radius: 10) [03:29:53 -3901.489250] SLOW spr round 17 (radius: 5) [03:30:06 -3901.489156] SLOW spr round 18 (radius: 10) [03:30:18 -3901.489153] SLOW spr round 19 (radius: 15) [03:30:33 -3900.344610] SLOW spr round 20 (radius: 5) [03:30:47 -3900.344610] SLOW spr round 21 (radius: 10) [03:30:59 -3900.344610] SLOW spr round 22 (radius: 15) [03:31:14 -3900.344610] SLOW spr round 23 (radius: 20) [03:31:33 -3898.961885] SLOW spr round 24 (radius: 5) [03:31:48 -3898.961871] SLOW spr round 25 (radius: 10) [03:32:00 -3897.344856] SLOW spr round 26 (radius: 5) [03:32:14 -3896.834375] SLOW spr round 27 (radius: 5) [03:32:26 -3896.833143] SLOW spr round 28 (radius: 10) [03:32:37 -3896.832973] SLOW spr round 29 (radius: 15) [03:32:54 -3896.832948] SLOW spr round 30 (radius: 20) [03:33:13 -3896.832944] SLOW spr round 31 (radius: 25) [03:33:33 -3889.206068] SLOW spr round 32 (radius: 5) [03:33:47 -3889.205855] SLOW spr round 33 (radius: 10) [03:34:00 -3889.205741] SLOW spr round 34 (radius: 15) [03:34:15 -3888.838688] SLOW spr round 35 (radius: 5) [03:34:30 -3888.838327] SLOW spr round 36 (radius: 10) [03:34:42 -3888.838224] SLOW spr round 37 (radius: 15) [03:34:57 -3888.838192] SLOW spr round 38 (radius: 20) [03:35:16 -3888.675682] SLOW spr round 39 (radius: 5) [03:35:31 -3888.675679] SLOW spr round 40 (radius: 10) [03:35:43 -3888.675678] SLOW spr round 41 (radius: 15) [03:35:59 -3888.675677] SLOW spr round 42 (radius: 20) [03:36:18 -3888.675677] SLOW spr round 43 (radius: 25) [03:36:37 -3888.675677] Model parameter optimization (eps = 0.100000) [03:36:42] ML tree search #17, logLikelihood: -3886.052656 [03:36:42 -12206.864587] Initial branch length optimization [03:36:42 -9850.958794] Model parameter optimization (eps = 10.000000) [03:36:46 -9789.033208] AUTODETECT spr round 1 (radius: 5) [03:36:55 -7480.855944] AUTODETECT spr round 2 (radius: 10) [03:37:07 -5903.661338] AUTODETECT spr round 3 (radius: 15) [03:37:20 -5331.773218] AUTODETECT spr round 4 (radius: 20) [03:37:35 -5052.741113] AUTODETECT spr round 5 (radius: 25) [03:37:50 -4950.310833] SPR radius for FAST iterations: 25 (autodetect) [03:37:50 -4950.310833] Model parameter optimization (eps = 3.000000) [03:37:58 -4896.347942] FAST spr round 1 (radius: 25) [03:38:09 -4249.213011] FAST spr round 2 (radius: 25) [03:38:19 -4177.893161] FAST spr round 3 (radius: 25) [03:38:28 -4159.664006] FAST spr round 4 (radius: 25) [03:38:37 -4153.626243] FAST spr round 5 (radius: 25) [03:38:46 -4145.540063] FAST spr round 6 (radius: 25) [03:38:55 -4145.539263] Model parameter optimization (eps = 1.000000) [03:38:58 -4142.897926] SLOW spr round 1 (radius: 5) [03:39:10 -4142.871818] SLOW spr round 2 (radius: 10) [03:39:21 -4140.743272] SLOW spr round 3 (radius: 5) [03:39:34 -4140.739405] SLOW spr round 4 (radius: 10) [03:39:47 -4124.148072] SLOW spr round 5 (radius: 5) [03:40:00 -4099.973140] SLOW spr round 6 (radius: 5) [03:40:13 -4099.324269] SLOW spr round 7 (radius: 5) [03:40:24 -4099.324248] SLOW spr round 8 (radius: 10) [03:40:34 -4099.324247] SLOW spr round 9 (radius: 15) [03:40:51 -4081.666120] SLOW spr round 10 (radius: 5) [03:41:06 -4073.021555] SLOW spr round 11 (radius: 5) [03:41:18 -4073.021505] SLOW spr round 12 (radius: 10) [03:41:29 -3961.391543] SLOW spr round 13 (radius: 5) [03:41:43 -3952.557607] SLOW spr round 14 (radius: 5) [03:41:55 -3952.557577] SLOW spr round 15 (radius: 10) [03:42:06 -3952.557576] SLOW spr round 16 (radius: 15) [03:42:21 -3951.443756] SLOW spr round 17 (radius: 5) [03:42:35 -3951.432181] SLOW spr round 18 (radius: 10) [03:42:47 -3951.430469] SLOW spr round 19 (radius: 15) [03:43:02 -3950.271074] SLOW spr round 20 (radius: 5) [03:43:16 -3950.271036] SLOW spr round 21 (radius: 10) [03:43:27 -3950.271032] SLOW spr round 22 (radius: 15) [03:43:42 -3950.271031] SLOW spr round 23 (radius: 20) [03:44:00 -3937.579254] SLOW spr round 24 (radius: 5) [03:44:15 -3929.998917] SLOW spr round 25 (radius: 5) [03:44:27 -3929.997878] SLOW spr round 26 (radius: 10) [03:44:39 -3913.142318] SLOW spr round 27 (radius: 5) [03:44:53 -3911.363374] SLOW spr round 28 (radius: 5) [03:45:05 -3911.173940] SLOW spr round 29 (radius: 5) [03:45:16 -3911.173931] SLOW spr round 30 (radius: 10) [03:45:27 -3909.276255] SLOW spr round 31 (radius: 5) [03:45:41 -3908.596843] SLOW spr round 32 (radius: 5) [03:45:53 -3908.596829] SLOW spr round 33 (radius: 10) [03:46:04 -3908.596829] SLOW spr round 34 (radius: 15) [03:46:20 -3908.596829] SLOW spr round 35 (radius: 20) [03:46:37 -3908.596829] SLOW spr round 36 (radius: 25) [03:46:58 -3905.695940] SLOW spr round 37 (radius: 5) [03:47:13 -3880.577350] SLOW spr round 38 (radius: 5) [03:47:26 -3849.928637] SLOW spr round 39 (radius: 5) [03:47:37 -3849.928634] SLOW spr round 40 (radius: 10) [03:47:48 -3849.928634] SLOW spr round 41 (radius: 15) [03:48:04 -3849.928634] SLOW spr round 42 (radius: 20) [03:48:22 -3849.928634] SLOW spr round 43 (radius: 25) [03:48:42 -3848.287686] SLOW spr round 44 (radius: 5) [03:48:56 -3848.287676] SLOW spr round 45 (radius: 10) [03:49:09 -3848.287676] SLOW spr round 46 (radius: 15) [03:49:24 -3848.287676] SLOW spr round 47 (radius: 20) [03:49:42 -3842.030252] SLOW spr round 48 (radius: 5) [03:49:56 -3841.639463] SLOW spr round 49 (radius: 5) [03:50:09 -3841.639463] SLOW spr round 50 (radius: 10) [03:50:20 -3841.639463] SLOW spr round 51 (radius: 15) [03:50:35 -3841.639463] SLOW spr round 52 (radius: 20) [03:50:53 -3841.639463] SLOW spr round 53 (radius: 25) [03:51:13 -3841.465760] SLOW spr round 54 (radius: 5) [03:51:27 -3841.465760] SLOW spr round 55 (radius: 10) [03:51:40 -3841.465760] SLOW spr round 56 (radius: 15) [03:51:54 -3840.692398] SLOW spr round 57 (radius: 5) [03:52:08 -3840.683270] SLOW spr round 58 (radius: 10) [03:52:20 -3840.681929] SLOW spr round 59 (radius: 15) [03:52:35 -3840.681729] SLOW spr round 60 (radius: 20) [03:52:52 -3840.681699] SLOW spr round 61 (radius: 25) [03:53:10 -3827.257005] SLOW spr round 62 (radius: 5) [03:53:25 -3826.274004] SLOW spr round 63 (radius: 5) [03:53:38 -3826.273947] SLOW spr round 64 (radius: 10) [03:53:49 -3826.273945] SLOW spr round 65 (radius: 15) [03:54:04 -3826.207532] SLOW spr round 66 (radius: 20) [03:54:21 -3826.206243] SLOW spr round 67 (radius: 25) [03:54:39 -3826.206144] Model parameter optimization (eps = 0.100000) [03:54:43] ML tree search #18, logLikelihood: -3825.877297 [03:54:43 -12144.129920] Initial branch length optimization [03:54:43 -9776.857544] Model parameter optimization (eps = 10.000000) [03:54:48 -9700.172366] AUTODETECT spr round 1 (radius: 5) [03:54:57 -7593.054521] AUTODETECT spr round 2 (radius: 10) [03:55:08 -6116.311642] AUTODETECT spr round 3 (radius: 15) [03:55:22 -5167.344246] AUTODETECT spr round 4 (radius: 20) [03:55:37 -4861.408976] AUTODETECT spr round 5 (radius: 25) [03:55:53 -4520.571815] SPR radius for FAST iterations: 25 (autodetect) [03:55:53 -4520.571815] Model parameter optimization (eps = 3.000000) [03:55:59 -4471.795130] FAST spr round 1 (radius: 25) [03:56:09 -4090.270211] FAST spr round 2 (radius: 25) [03:56:19 -4063.532684] FAST spr round 3 (radius: 25) [03:56:28 -4009.371465] FAST spr round 4 (radius: 25) [03:56:37 -4001.368230] FAST spr round 5 (radius: 25) [03:56:46 -4001.367974] Model parameter optimization (eps = 1.000000) [03:56:50 -3999.892099] SLOW spr round 1 (radius: 5) [03:57:02 -3998.587567] SLOW spr round 2 (radius: 5) [03:57:13 -3998.586749] SLOW spr round 3 (radius: 10) [03:57:24 -3989.371518] SLOW spr round 4 (radius: 5) [03:57:38 -3989.371489] SLOW spr round 5 (radius: 10) [03:57:50 -3987.777486] SLOW spr round 6 (radius: 5) [03:58:03 -3987.777130] SLOW spr round 7 (radius: 10) [03:58:14 -3987.777130] SLOW spr round 8 (radius: 15) [03:58:29 -3975.088193] SLOW spr round 9 (radius: 5) [03:58:44 -3945.498408] SLOW spr round 10 (radius: 5) [03:58:56 -3945.233315] SLOW spr round 11 (radius: 5) [03:59:08 -3945.233260] SLOW spr round 12 (radius: 10) [03:59:18 -3945.233259] SLOW spr round 13 (radius: 15) [03:59:34 -3943.515593] SLOW spr round 14 (radius: 5) [03:59:48 -3943.515574] SLOW spr round 15 (radius: 10) [04:00:00 -3943.515574] SLOW spr round 16 (radius: 15) [04:00:14 -3943.515574] SLOW spr round 17 (radius: 20) [04:00:32 -3941.188252] SLOW spr round 18 (radius: 5) [04:00:46 -3940.812810] SLOW spr round 19 (radius: 5) [04:00:58 -3940.808108] SLOW spr round 20 (radius: 10) [04:01:09 -3940.473338] SLOW spr round 21 (radius: 5) [04:01:23 -3940.473300] SLOW spr round 22 (radius: 10) [04:01:35 -3940.473300] SLOW spr round 23 (radius: 15) [04:01:49 -3940.473300] SLOW spr round 24 (radius: 20) [04:02:06 -3940.473300] SLOW spr round 25 (radius: 25) [04:02:25 -3938.783820] SLOW spr round 26 (radius: 5) [04:02:39 -3938.782740] SLOW spr round 27 (radius: 10) [04:02:52 -3938.782138] SLOW spr round 28 (radius: 15) [04:03:06 -3938.781805] SLOW spr round 29 (radius: 20) [04:03:23 -3938.781622] SLOW spr round 30 (radius: 25) [04:03:42 -3938.781521] Model parameter optimization (eps = 0.100000) [04:03:45] ML tree search #19, logLikelihood: -3938.501901 [04:03:45 -12095.999781] Initial branch length optimization [04:03:45 -9739.930798] Model parameter optimization (eps = 10.000000) [04:03:49 -9691.603010] AUTODETECT spr round 1 (radius: 5) [04:03:58 -7673.788280] AUTODETECT spr round 2 (radius: 10) [04:04:09 -6152.432936] AUTODETECT spr round 3 (radius: 15) [04:04:21 -5324.163454] AUTODETECT spr round 4 (radius: 20) [04:04:38 -4638.056774] AUTODETECT spr round 5 (radius: 25) [04:04:52 -4545.458123] SPR radius for FAST iterations: 25 (autodetect) [04:04:53 -4545.458123] Model parameter optimization (eps = 3.000000) [04:04:56 -4498.149261] FAST spr round 1 (radius: 25) [04:05:06 -4081.189115] FAST spr round 2 (radius: 25) [04:05:15 -3986.673815] FAST spr round 3 (radius: 25) [04:05:24 -3964.849238] FAST spr round 4 (radius: 25) [04:05:33 -3964.849204] Model parameter optimization (eps = 1.000000) [04:05:35 -3964.822451] SLOW spr round 1 (radius: 5) [04:05:47 -3964.474350] SLOW spr round 2 (radius: 5) [04:05:59 -3964.474286] SLOW spr round 3 (radius: 10) [04:06:09 -3963.539588] SLOW spr round 4 (radius: 5) [04:06:23 -3963.243025] SLOW spr round 5 (radius: 5) [04:06:35 -3963.242086] SLOW spr round 6 (radius: 10) [04:06:46 -3962.855386] SLOW spr round 7 (radius: 5) [04:07:00 -3962.855380] SLOW spr round 8 (radius: 10) [04:07:11 -3962.855379] SLOW spr round 9 (radius: 15) [04:07:26 -3961.105721] SLOW spr round 10 (radius: 5) [04:07:40 -3958.487065] SLOW spr round 11 (radius: 5) [04:07:53 -3958.444675] SLOW spr round 12 (radius: 10) [04:08:03 -3958.444245] SLOW spr round 13 (radius: 15) [04:08:19 -3958.181300] SLOW spr round 14 (radius: 5) [04:08:33 -3955.545279] SLOW spr round 15 (radius: 5) [04:08:45 -3955.545241] SLOW spr round 16 (radius: 10) [04:08:56 -3955.545241] SLOW spr round 17 (radius: 15) [04:09:12 -3954.874991] SLOW spr round 18 (radius: 5) [04:09:26 -3953.632383] SLOW spr round 19 (radius: 5) [04:09:38 -3953.632382] SLOW spr round 20 (radius: 10) [04:09:50 -3953.632382] SLOW spr round 21 (radius: 15) [04:10:05 -3953.595613] SLOW spr round 22 (radius: 20) [04:10:22 -3951.003572] SLOW spr round 23 (radius: 5) [04:10:37 -3949.530811] SLOW spr round 24 (radius: 5) [04:10:50 -3947.118057] SLOW spr round 25 (radius: 5) [04:11:02 -3947.116306] SLOW spr round 26 (radius: 10) [04:11:13 -3947.116225] SLOW spr round 27 (radius: 15) [04:11:29 -3945.416835] SLOW spr round 28 (radius: 5) [04:11:43 -3944.882568] SLOW spr round 29 (radius: 5) [04:11:56 -3944.882549] SLOW spr round 30 (radius: 10) [04:12:07 -3944.882549] SLOW spr round 31 (radius: 15) [04:12:22 -3944.882549] SLOW spr round 32 (radius: 20) [04:12:40 -3944.341939] SLOW spr round 33 (radius: 5) [04:12:54 -3944.341909] SLOW spr round 34 (radius: 10) [04:13:06 -3944.341909] SLOW spr round 35 (radius: 15) [04:13:21 -3944.341909] SLOW spr round 36 (radius: 20) [04:13:39 -3944.341909] SLOW spr round 37 (radius: 25) [04:13:58 -3942.874682] SLOW spr round 38 (radius: 5) [04:14:13 -3941.916225] SLOW spr round 39 (radius: 5) [04:14:26 -3941.916166] SLOW spr round 40 (radius: 10) [04:14:37 -3941.916164] SLOW spr round 41 (radius: 15) [04:14:52 -3941.916164] SLOW spr round 42 (radius: 20) [04:15:10 -3941.916164] SLOW spr round 43 (radius: 25) [04:15:29 -3941.719469] SLOW spr round 44 (radius: 5) [04:15:44 -3938.888899] SLOW spr round 45 (radius: 5) [04:15:56 -3938.888867] SLOW spr round 46 (radius: 10) [04:16:07 -3938.888867] SLOW spr round 47 (radius: 15) [04:16:23 -3938.888867] SLOW spr round 48 (radius: 20) [04:16:40 -3938.888867] SLOW spr round 49 (radius: 25) [04:16:59 -3938.637227] SLOW spr round 50 (radius: 5) [04:17:14 -3937.138048] SLOW spr round 51 (radius: 5) [04:17:27 -3937.043024] SLOW spr round 52 (radius: 10) [04:17:38 -3934.524821] SLOW spr round 53 (radius: 5) [04:17:52 -3912.809549] SLOW spr round 54 (radius: 5) [04:18:04 -3911.561827] SLOW spr round 55 (radius: 5) [04:18:15 -3911.561774] SLOW spr round 56 (radius: 10) [04:18:26 -3910.279666] SLOW spr round 57 (radius: 5) [04:18:40 -3880.998873] SLOW spr round 58 (radius: 5) [04:18:52 -3880.998468] SLOW spr round 59 (radius: 10) [04:19:03 -3879.539657] SLOW spr round 60 (radius: 5) [04:19:17 -3877.822246] SLOW spr round 61 (radius: 5) [04:19:29 -3877.821815] SLOW spr round 62 (radius: 10) [04:19:40 -3877.821810] SLOW spr round 63 (radius: 15) [04:19:56 -3855.198543] SLOW spr round 64 (radius: 5) [04:20:11 -3845.773463] SLOW spr round 65 (radius: 5) [04:20:23 -3845.773356] SLOW spr round 66 (radius: 10) [04:20:34 -3845.773356] SLOW spr round 67 (radius: 15) [04:20:50 -3845.773356] SLOW spr round 68 (radius: 20) [04:21:07 -3845.773356] SLOW spr round 69 (radius: 25) [04:21:24 -3845.773356] Model parameter optimization (eps = 0.100000) [04:21:25] ML tree search #20, logLikelihood: -3845.325317 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.399601,0.503389) (0.304785,1.123182) (0.295215,1.538280) (0.000400,5.988936) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -3825.877297 AIC score: 9145.754594 / AICc score: 1126657.754594 / BIC score: 10056.254836 Free parameters (model + branch lengths): 747 WARNING: Number of free parameters (K=747) is larger than alignment size (n=25). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 156 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EY9/3_mltree/Q96EY9.raxml.bestTreeCollapsed Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EY9/3_mltree/Q96EY9.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EY9/3_mltree/Q96EY9.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EY9/3_mltree/Q96EY9.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EY9/3_mltree/Q96EY9.raxml.log Analysis started: 16-Jul-2021 19:08:26 / finished: 16-Jul-2021 23:29:52 Elapsed time: 15685.896 seconds