RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 08-Jul-2021 09:14:52 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EQ8/2_msa/Q96EQ8_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EQ8/3_mltree/Q96EQ8 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EQ8/2_msa/Q96EQ8_trimmed_msa.fasta [00:00:00] Loaded alignment with 668 taxa and 12 sites WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A072UVL6_A0A072UVL6_MEDTR_3880 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_F4ICB5_F4ICB5_ARATH_3702 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_M5WWI6_M5WWI6_PRUPE_3760 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_B9RLV0_B9RLV0_RICCO_3988 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_D7KGG4_D7KGG4_ARALL_81972 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_I1KCV7_I1KCV7_SOYBN_3847 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_D7SI75_D7SI75_VITVI_29760 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_M4EA69_M4EA69_BRARP_51351 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_M4EQG7_M4EQG7_BRARP_51351 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A061FXY3_A0A061FXY3_THECC_3641 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A067EJW4_A0A067EJW4_CITSI_2711 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A067KHJ0_A0A067KHJ0_JATCU_180498 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A078G3F8_A0A078G3F8_BRANA_3708 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A078GNB3_A0A078GNB3_BRANA_3708 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A078J230_A0A078J230_BRANA_3708 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_R0ISC2_R0ISC2_9BRAS_81985 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A0A0LUJ8_A0A0A0LUJ8_CUCSA_3659 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_V4VM51_V4VM51_9ROSI_85681 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_V4KUC3_V4KUC3_EUTSA_72664 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A059CZ67_A0A059CZ67_EUCGR_71139 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A0D3CBA6_A0A0D3CBA6_BRAOL_109376 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A0D3DWM7_A0A0D3DWM7_BRAOL_109376 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A0D2LW29_A0A0D2LW29_GOSRA_29730 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A0L9UC42_A0A0L9UC42_PHAAN_3914 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A0K9QQ76_A0A0K9QQ76_SPIOL_3562 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A151SM11_A0A151SM11_CAJCA_3821 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A1S3TQQ1_A0A1S3TQQ1_VIGRR_3916 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A1S4DZI1_A0A1S4DZI1_CUCME_3656 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A2C9UKW0_A0A2C9UKW0_MANES_3983 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A2C9VRK2_A0A2C9VRK2_MANES_3983 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A1Q3BUB1_A0A1Q3BUB1_CEPFO_3775 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A1R3JBV3_A0A1R3JBV3_COCAP_210143 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A1U8M5R3_A0A1U8M5R3_GOSHI_3635 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A1U8NZ69_A0A1U8NZ69_GOSHI_3635 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A251U8K9_A0A251U8K9_HELAN_4232 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A251UYI9_A0A251UYI9_HELAN_4232 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A2J6L4C0_A0A2J6L4C0_LACSA_4236 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A2I4H425_A0A2I4H425_JUGRE_51240 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A2H5QR41_A0A2H5QR41_CITUN_55188 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A2P6P2T2_A0A2P6P2T2_ROSCH_74649 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A2R6PU59_A0A2R6PU59_ACTCH_1590841 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A2R6QH43_A0A2R6QH43_ACTCH_1590841 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A103XYN6_A0A103XYN6_CYNCS_59895 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A118JYF2_A0A118JYF2_CYNCS_59895 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A2U1LC96_A0A2U1LC96_ARTAN_35608 are exactly identical! WARNING: Sequences tr_V7AWZ8_V7AWZ8_PHAVU_3885 and tr_A0A2U1MKI1_A0A2U1MKI1_ARTAN_35608 are exactly identical! WARNING: Sequences tr_E7FEA4_E7FEA4_DANRE_7955 and tr_F7FE34_F7FE34_ORNAN_9258 are exactly identical! WARNING: Sequences tr_E7FEA4_E7FEA4_DANRE_7955 and tr_W5KUP3_W5KUP3_ASTMX_7994 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and sp_Q5F3B2_RN166_CHICK_9031 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and sp_Q3U9F6_RN166_MOUSE_10090 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_M3Y9L2_M3Y9L2_MUSPF_9669 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_H2MYD4_H2MYD4_ORYLA_8090 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_G1PCJ2_G1PCJ2_MYOLU_59463 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_G3RA09_G3RA09_GORGO_9595 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_H2NRS0_H2NRS0_PONAB_9601 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_G1N726_G1N726_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_H9GBV4_H9GBV4_ANOCA_28377 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_F1PHC6_F1PHC6_CANLF_9615 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_H2QBQ3_H2QBQ3_PANTR_9598 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_F6R9W7_F6R9W7_MONDO_13616 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_F6Q5Y4_F6Q5Y4_HORSE_9796 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_W5PUL0_W5PUL0_SHEEP_9940 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and sp_Q6J1I7_RN166_RAT_10116 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A3B5RF18_A0A3B5RF18_XIPMA_8083 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_I3M3B8_I3M3B8_ICTTR_43179 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_H0XVB3_H0XVB3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A3B5K2J8_A0A3B5K2J8_TAKRU_31033 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_H0UX27_H0UX27_CAVPO_10141 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and sp_Q96A37_RN166_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_G5C2U2_G5C2U2_HETGA_10181 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_K7F953_K7F953_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_G3SVL3_G3SVL3_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_G3VF15_G3VF15_SARHA_9305 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_G3VYV6_G3VYV6_SARHA_9305 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_H0ZBK3_H0ZBK3_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_Q0VFJ0_Q0VFJ0_XENTR_8364 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_U3DQK0_U3DQK0_CALJA_9483 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A287A9W7_A0A287A9W7_PIG_9823 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_G7PZY8_G7PZY8_MACFA_9541 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A6H736_A6H736_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_U3JLI6_U3JLI6_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A087YCG0_A0A087YCG0_POEFO_48698 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A096N2Q9_A0A096N2Q9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A091DL91_A0A091DL91_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A0D9S2C6_A0A0D9S2C6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A0P7Y9D6_A0A0P7Y9D6_9TELE_113540 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A0Q3PH04_A0A0Q3PH04_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A091F434_A0A091F434_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A093QC98_A0A093QC98_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A091URR8_A0A091URR8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A087QQ40_A0A087QQ40_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A093HKQ5_A0A093HKQ5_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A091GUV7_A0A091GUV7_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A0A0AUQ8_A0A0A0AUQ8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A2I0LIV8_A0A2I0LIV8_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A093GM77_A0A093GM77_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A1S3A993_A0A1S3A993_ERIEU_9365 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A1S3KUU7_A0A1S3KUU7_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A1S3PTG7_A0A1S3PTG7_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A1L8GEW8_A0A1L8GEW8_XENLA_8355 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A1U7QRK6_A0A1U7QRK6_MESAU_10036 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A1V4K2Z5_A0A1V4K2Z5_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A2I4AYD5_A0A2I4AYD5_9TELE_52670 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A226NC54_A0A226NC54_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A226PEB3_A0A226PEB3_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A2K5KVC0_A0A2K5KVC0_CERAT_9531 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A2K6E6Q7_A0A2K6E6Q7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A2U3VCA4_A0A2U3VCA4_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A2Y9DN84_A0A2Y9DN84_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A2Y9K2Q8_A0A2Y9K2Q8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A2Y9NUH1_A0A2Y9NUH1_DELLE_9749 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A2Y9SXS4_A0A2Y9SXS4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F1NAX4_F1NAX4_CHICK_9031 and tr_A0A383ZCQ8_A0A383ZCQ8_BALAS_310752 are exactly identical! WARNING: Sequences tr_F1NC08_F1NC08_CHICK_9031 and tr_G3I922_G3I922_CRIGR_10029 are exactly identical! WARNING: Sequences tr_F1NC08_F1NC08_CHICK_9031 and tr_G1NDQ1_G1NDQ1_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NC08_F1NC08_CHICK_9031 and tr_D3ZI70_D3ZI70_RAT_10116 are exactly identical! WARNING: Sequences tr_F1NC08_F1NC08_CHICK_9031 and tr_H0XK52_H0XK52_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F1NC08_F1NC08_CHICK_9031 and tr_G5B2C9_G5B2C9_HETGA_10181 are exactly identical! WARNING: Sequences tr_F1NC08_F1NC08_CHICK_9031 and tr_K7FCJ1_K7FCJ1_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NC08_F1NC08_CHICK_9031 and tr_H0ZKG4_H0ZKG4_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NC08_F1NC08_CHICK_9031 and tr_U3IJ19_U3IJ19_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NC08_F1NC08_CHICK_9031 and tr_A0A093SNJ0_A0A093SNJ0_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NC08_F1NC08_CHICK_9031 and tr_A0A091I5H8_A0A091I5H8_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1NC08_F1NC08_CHICK_9031 and tr_A0A2U3ZDC9_A0A2U3ZDC9_ODORO_9708 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_H0ZEI4_H0ZEI4_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_U3KET6_U3KET6_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_U3J4P8_U3J4P8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_A0A091E5B5_A0A091E5B5_CORBR_85066 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_A0A093RUQ1_A0A093RUQ1_9PASS_328815 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_A0A087QS32_A0A087QS32_APTFO_9233 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_A0A093H9S0_A0A093H9S0_STRCA_441894 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_A0A091X9P0_A0A091X9P0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_A0A091G016_A0A091G016_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_A0A093GQX5_A0A093GQX5_DRYPU_118200 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_A0A091HRY9_A0A091HRY9_CALAN_9244 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_A0A1V4KL35_A0A1V4KL35_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_A0A226MGR9_A0A226MGR9_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q6J211_Q6J211_CHICK_9031 and tr_A0A226PHQ6_A0A226PHQ6_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_G9KLD4_G9KLD4_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2I3HNY7_A0A2I3HNY7_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_G1PLG6_G1PLG6_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_H2NW51_H2NW51_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_J9PBI0_J9PBI0_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2I3TFY9_A0A2I3TFY9_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_F6V3R9_F6V3R9_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_W5P805_W5P805_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A0G2JXY7_A0A0G2JXY7_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_I3NGP2_I3NGP2_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_H0WI65_H0WI65_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and sp_Q96EQ8_RN125_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_G5C304_G5C304_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_G3T2M2_G3T2M2_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2R8MDR5_A0A2R8MDR5_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_K7GL56_K7GL56_PIG_9823 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_D2HQL7_D2HQL7_AILME_9646 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_G7PWL2_G7PWL2_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_E1BJY5_E1BJY5_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_L5K272_L5K272_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_M3X3H3_M3X3H3_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A096NB50_A0A096NB50_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A0D9RZ49_A0A0D9RZ49_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A1S2ZL03_A0A1S2ZL03_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A1S3F2E7_A0A1S3F2E7_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A3Q0DJM4_A0A3Q0DJM4_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A1U8CLP3_A0A1U8CLP3_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2K5NPG8_A0A2K5NPG8_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2K6D0Z3_A0A2K6D0Z3_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2K5XIH3_A0A2K5XIH3_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2R8ZZB0_A0A2R8ZZB0_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2U3V981_A0A2U3V981_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2U3WU92_A0A2U3WU92_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2Y9RTL9_A0A2Y9RTL9_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2Y9IWC0_A0A2Y9IWC0_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2Y9P676_A0A2Y9P676_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A2Y9FU10_A0A2Y9FU10_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A384C474_A0A384C474_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q9D9R0_RN125_MOUSE_10090 and tr_A0A383YW34_A0A383YW34_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_M3Z1I5_M3Z1I5_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_G1R5P2_G1R5P2_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_G1PRE3_G1PRE3_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_H2P296_H2P296_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_G1T0W0_G1T0W0_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_F1PY34_F1PY34_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_H2QKK0_H2QKK0_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and sp_Q6J212_RN114_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_F7DIZ6_F7DIZ6_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_W5PUG0_W5PUG0_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and sp_Q6J2U6_RN114_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_I3M6K1_I3M6K1_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_H0WNU3_H0WNU3_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_H0V4N1_H0V4N1_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and sp_Q9Y508_RN114_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_F6RK58_F6RK58_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_G5AZ06_G5AZ06_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_F6U6P9_F6U6P9_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and sp_Q6J1I8_RN114_PIG_9823 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_G1M4D3_G1M4D3_AILME_9646 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and sp_Q4U5R4_RN114_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_L5JY75_L5JY75_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_M3X765_M3X765_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A2I3MR78_A0A2I3MR78_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A091DZZ8_A0A091DZZ8_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A0D9RRA5_A0A0D9RRA5_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A1S3ADC3_A0A1S3ADC3_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A1S3FT70_A0A1S3FT70_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A1U7U2L9_A0A1U7U2L9_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A1U7QWA5_A0A1U7QWA5_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A2K5LAN2_A0A2K5LAN2_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A2K6DRT9_A0A2K6DRT9_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A2K5YBT3_A0A2K5YBT3_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A2R9CS64_A0A2R9CS64_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A2U3V7P2_A0A2U3V7P2_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A2U3WT67_A0A2U3WT67_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A2U3XKC3_A0A2U3XKC3_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A2Y9DA45_A0A2Y9DA45_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A2Y9IN46_A0A2Y9IN46_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A2Y9Q2B4_A0A2Y9Q2B4_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A384CP40_A0A384CP40_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q9ET26_RN114_MOUSE_10090 and tr_A0A384ADD2_A0A384ADD2_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5JJR1_W5JJR1_ANODA_43151 and tr_Q7Q649_Q7Q649_ANOGA_7165 are exactly identical! WARNING: Sequences tr_W5JJR1_W5JJR1_ANODA_43151 and tr_Q175V9_Q175V9_AEDAE_7159 are exactly identical! WARNING: Sequences tr_A0A1B6QMF0_A0A1B6QMF0_SORBI_4558 and tr_A0A368SPC2_A0A368SPC2_SETIT_4555 are exactly identical! WARNING: Sequences tr_A0A1B6QMF0_A0A1B6QMF0_SORBI_4558 and tr_A0A0E0GPJ4_A0A0E0GPJ4_ORYNI_4536 are exactly identical! WARNING: Sequences tr_A0A1B6QMF0_A0A1B6QMF0_SORBI_4558 and tr_B8AKS0_B8AKS0_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A1B6QMF0_A0A1B6QMF0_SORBI_4558 and tr_A0A1D6K627_A0A1D6K627_MAIZE_4577 are exactly identical! WARNING: Sequences tr_A0A1B6QMF0_A0A1B6QMF0_SORBI_4558 and tr_A0A0E0R7S7_A0A0E0R7S7_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A1B6QMF0_A0A1B6QMF0_SORBI_4558 and tr_I1GQR5_I1GQR5_BRADI_15368 are exactly identical! WARNING: Sequences tr_A0A1B6QMF0_A0A1B6QMF0_SORBI_4558 and tr_A0A0D3FKD7_A0A0D3FKD7_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A1B6QMF0_A0A1B6QMF0_SORBI_4558 and tr_A0A0D9Z9H3_A0A0D9Z9H3_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A1B6QMF0_A0A1B6QMF0_SORBI_4558 and tr_A0A0E0KFJ4_A0A0E0KFJ4_ORYPU_4537 are exactly identical! WARNING: Sequences tr_A0A1B6QMF0_A0A1B6QMF0_SORBI_4558 and tr_A0A2T7CB53_A0A2T7CB53_9POAL_1504633 are exactly identical! WARNING: Sequences tr_C5X4N8_C5X4N8_SORBI_4558 and tr_A0A1D6ESN3_A0A1D6ESN3_MAIZE_4577 are exactly identical! WARNING: Sequences tr_C5X4N8_C5X4N8_SORBI_4558 and tr_A0A1D6I813_A0A1D6I813_MAIZE_4577 are exactly identical! WARNING: Sequences tr_C5XIT4_C5XIT4_SORBI_4558 and tr_A0A1D6MRY8_A0A1D6MRY8_MAIZE_4577 are exactly identical! WARNING: Sequences tr_C5XIT4_C5XIT4_SORBI_4558 and tr_B4F9X1_B4F9X1_MAIZE_4577 are exactly identical! WARNING: Sequences tr_C5XIT4_C5XIT4_SORBI_4558 and tr_W1PTU2_W1PTU2_AMBTC_13333 are exactly identical! WARNING: Sequences tr_C5XIT4_C5XIT4_SORBI_4558 and tr_A0A3B6TK58_A0A3B6TK58_WHEAT_4565 are exactly identical! WARNING: Sequences tr_C5XIT4_C5XIT4_SORBI_4558 and tr_A0A2T7D3R6_A0A2T7D3R6_9POAL_1504633 are exactly identical! WARNING: Sequences tr_A0A3B3HUM7_A0A3B3HUM7_ORYLA_8090 and tr_A0A3B5QCZ5_A0A3B5QCZ5_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A3B3HUM7_A0A3B3HUM7_ORYLA_8090 and tr_I3JLZ4_I3JLZ4_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B3HUM7_A0A3B3HUM7_ORYLA_8090 and tr_A0A3B5JWW0_A0A3B5JWW0_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B3HUM7_A0A3B3HUM7_ORYLA_8090 and tr_H3CPP3_H3CPP3_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B3HUM7_A0A3B3HUM7_ORYLA_8090 and tr_G3Q543_G3Q543_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A3B3HUM7_A0A3B3HUM7_ORYLA_8090 and tr_A0A1S3N9Z6_A0A1S3N9Z6_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B3HUM7_A0A3B3HUM7_ORYLA_8090 and tr_A0A2I4CDS7_A0A2I4CDS7_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A3B3HUM7_A0A3B3HUM7_ORYLA_8090 and tr_A0A2U9AZV3_A0A2U9AZV3_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2MA84_H2MA84_ORYLA_8090 and tr_I3IWE3_I3IWE3_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2MA84_H2MA84_ORYLA_8090 and tr_A0A1S3Q5U1_A0A1S3Q5U1_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q0UXB2_Q0UXB2_PHANO_321614 and tr_A0A177BXS6_A0A177BXS6_9PLEO_1460663 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_G1P4Q9_G1P4Q9_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_G3RQA3_G3RQA3_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_G1MQT1_G1MQT1_MELGA_9103 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_H9GA04_H9GA04_ANOCA_28377 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_G1SPY6_G1SPY6_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_H2QAM1_H2QAM1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_F7BGA2_F7BGA2_MONDO_13616 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_W5PCY5_W5PCY5_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and sp_Q9NZS9_BFAR_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_H3CS39_H3CS39_TETNG_99883 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A287B4W6_A0A287B4W6_PIG_9823 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_H3A1D4_H3A1D4_LATCH_7897 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A5PJN7_A5PJN7_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_L5KQB1_L5KQB1_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_M3VUQ3_M3VUQ3_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_U3J2J4_U3J2J4_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_W5LXA3_W5LXA3_LEPOC_7918 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A0Q3P507_A0A0Q3P507_AMAAE_12930 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A093PYB0_A0A093PYB0_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A091UR98_A0A091UR98_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A091WB93_A0A091WB93_OPIHO_30419 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A099Z3R9_A0A099Z3R9_TINGU_94827 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A091FZT6_A0A091FZT6_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A1S3A5A8_A0A1S3A5A8_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A1S3EUX1_A0A1S3EUX1_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A2R9BGJ5_A0A2R9BGJ5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A2U4ATV1_A0A2U4ATV1_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A2Y9LGR4_A0A2Y9LGR4_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A2Y9EQC0_A0A2Y9EQC0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1RH12_G1RH12_NOMLE_61853 and tr_A0A384AM33_A0A384AM33_BALAS_310752 are exactly identical! WARNING: Sequences tr_D8S3K1_D8S3K1_SELML_88036 and tr_D8SUD1_D8SUD1_SELML_88036 are exactly identical! WARNING: Sequences tr_Q7SAR3_Q7SAR3_NEUCR_367110 and tr_F7VRY5_F7VRY5_SORMK_771870 are exactly identical! WARNING: Sequences tr_Q7SAR3_Q7SAR3_NEUCR_367110 and tr_G4UL05_G4UL05_NEUT9_510952 are exactly identical! WARNING: Sequences tr_B8ND94_B8ND94_ASPFN_332952 and tr_Q2U933_Q2U933_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8ND94_B8ND94_ASPFN_332952 and tr_A0A0F0IEJ1_A0A0F0IEJ1_ASPPU_1403190 are exactly identical! WARNING: Sequences tr_B8ND94_B8ND94_ASPFN_332952 and tr_A0A0L1ISQ2_A0A0L1ISQ2_ASPNO_1509407 are exactly identical! WARNING: Sequences tr_B8ND94_B8ND94_ASPFN_332952 and tr_A0A1F8AF15_A0A1F8AF15_9EURO_109264 are exactly identical! WARNING: Sequences tr_B8ND94_B8ND94_ASPFN_332952 and tr_A0A1S9DAH8_A0A1S9DAH8_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_B8ND94_B8ND94_ASPFN_332952 and tr_A0A2G7G791_A0A2G7G791_9EURO_656916 are exactly identical! WARNING: Sequences tr_Q4N251_Q4N251_THEPA_5875 and tr_Q4U9F6_Q4U9F6_THEAN_5874 are exactly identical! WARNING: Sequences tr_G7L5V8_G7L5V8_MEDTR_3880 and tr_A0A1S2XRF2_A0A1S2XRF2_CICAR_3827 are exactly identical! WARNING: Sequences tr_B9QFM1_B9QFM1_TOXGV_432359 and tr_A0A074TRM4_A0A074TRM4_HAMHA_99158 are exactly identical! WARNING: Sequences tr_F9F126_F9F126_FUSOF_660025 and tr_W7MM90_W7MM90_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9F126_F9F126_FUSOF_660025 and tr_A0A0D2XW61_A0A0D2XW61_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9F126_F9F126_FUSOF_660025 and tr_N4U2M2_N4U2M2_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9F126_F9F126_FUSOF_660025 and tr_X0CA06_X0CA06_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9F126_F9F126_FUSOF_660025 and tr_A0A2H3T9B8_A0A2H3T9B8_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9F126_F9F126_FUSOF_660025 and tr_A0A2H3HZR3_A0A2H3HZR3_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9F126_F9F126_FUSOF_660025 and tr_A0A2K0WPP2_A0A2K0WPP2_GIBNY_42673 are exactly identical! WARNING: Sequences tr_Q4WTZ0_Q4WTZ0_ASPFU_330879 and tr_A0A0S7E2Z6_A0A0S7E2Z6_9EURO_293939 are exactly identical! WARNING: Sequences tr_D7FV06_D7FV06_ECTSI_2880 and tr_A0A1Y1IV45_A0A1Y1IV45_KLENI_105231 are exactly identical! WARNING: Sequences tr_M4AM54_M4AM54_XIPMA_8083 and tr_A0A3B5K4L3_A0A3B5K4L3_TAKRU_31033 are exactly identical! WARNING: Sequences tr_M4AM54_M4AM54_XIPMA_8083 and tr_A0A087XNI3_A0A087XNI3_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AM54_M4AM54_XIPMA_8083 and tr_B5X1B4_B5X1B4_SALSA_8030 are exactly identical! WARNING: Sequences tr_M4AM54_M4AM54_XIPMA_8083 and tr_A0A2I4BXX0_A0A2I4BXX0_9TELE_52670 are exactly identical! WARNING: Sequences tr_M4AM54_M4AM54_XIPMA_8083 and tr_A0A060X4Q2_A0A060X4Q2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_M4AM54_M4AM54_XIPMA_8083 and tr_A0A2U9BZN4_A0A2U9BZN4_SCOMX_52904 are exactly identical! WARNING: Sequences tr_K4CY17_K4CY17_SOLLC_4081 and tr_M1BYM3_M1BYM3_SOLTU_4113 are exactly identical! WARNING: Sequences tr_A0A158NCF3_A0A158NCF3_ATTCE_12957 and tr_A0A151JR75_A0A151JR75_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NCF3_A0A158NCF3_ATTCE_12957 and tr_A0A195BWA2_A0A195BWA2_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NCF3_A0A158NCF3_ATTCE_12957 and tr_A0A195F8W2_A0A195F8W2_9HYME_34720 are exactly identical! WARNING: Sequences tr_I3KM47_I3KM47_ORENI_8128 and tr_G3Q3I6_G3Q3I6_GASAC_69293 are exactly identical! WARNING: Sequences tr_I3KM47_I3KM47_ORENI_8128 and tr_A0A0P7UPN4_A0A0P7UPN4_9TELE_113540 are exactly identical! WARNING: Sequences sp_Q9FF61_SM3L1_ARATH_3702 and tr_D7LYB0_D7LYB0_ARALL_81972 are exactly identical! WARNING: Sequences sp_Q9FF61_SM3L1_ARATH_3702 and tr_R0H8R9_R0H8R9_9BRAS_81985 are exactly identical! WARNING: Sequences sp_Q9FF61_SM3L1_ARATH_3702 and tr_V4KR55_V4KR55_EUTSA_72664 are exactly identical! WARNING: Sequences tr_A0A2K1XA28_A0A2K1XA28_POPTR_3694 and tr_A0A2K1XA42_A0A2K1XA42_POPTR_3694 are exactly identical! WARNING: Sequences tr_A0A2K1ZW75_A0A2K1ZW75_POPTR_3694 and tr_B9RU66_B9RU66_RICCO_3988 are exactly identical! WARNING: Sequences tr_A0A2K1ZW75_A0A2K1ZW75_POPTR_3694 and tr_A0A2C9V8N7_A0A2C9V8N7_MANES_3983 are exactly identical! WARNING: Sequences tr_A2YXA3_A2YXA3_ORYSI_39946 and tr_A0A0E0QLH0_A0A0E0QLH0_ORYRU_4529 are exactly identical! WARNING: Sequences tr_I1NRX9_I1NRX9_ORYGL_4538 and tr_A0A0D3EUF2_A0A0D3EUF2_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1NRX9_I1NRX9_ORYGL_4538 and tr_A0A0E0JP46_A0A0E0JP46_ORYPU_4537 are exactly identical! WARNING: Sequences tr_F9X9I4_F9X9I4_ZYMTI_336722 and tr_A0A0F4GZC8_A0A0F4GZC8_9PEZI_1047168 are exactly identical! WARNING: Sequences tr_F9X9I4_F9X9I4_ZYMTI_336722 and tr_A0A1X7RRJ4_A0A1X7RRJ4_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_F6PN75_F6PN75_XENTR_8364 and tr_A0A1L8FT09_A0A1L8FT09_XENLA_8355 are exactly identical! WARNING: Sequences tr_F6PN75_F6PN75_XENTR_8364 and tr_A0A1L8FYV8_A0A1L8FYV8_XENLA_8355 are exactly identical! WARNING: Sequences tr_G2YM08_G2YM08_BOTF4_999810 and tr_M7TSW4_M7TSW4_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_G2YM08_G2YM08_BOTF4_999810 and tr_A0A2J6PY88_A0A2J6PY88_9HELO_1745343 are exactly identical! WARNING: Sequences tr_E3QIR2_E3QIR2_COLGM_645133 and tr_A0A010QB42_A0A010QB42_9PEZI_1445577 are exactly identical! WARNING: Sequences tr_E3QIR2_E3QIR2_COLGM_645133 and tr_A0A135U5D2_A0A135U5D2_9PEZI_1209931 are exactly identical! WARNING: Sequences tr_E3QIR2_E3QIR2_COLGM_645133 and tr_A0A1G4BLJ6_A0A1G4BLJ6_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_B4M202_B4M202_DROVI_7244 and tr_B4L8G7_B4L8G7_DROMO_7230 are exactly identical! WARNING: Sequences tr_L2GDU8_L2GDU8_COLFN_1213859 and tr_T0LLF0_T0LLF0_COLGC_1237896 are exactly identical! WARNING: Sequences tr_L2GDU8_L2GDU8_COLFN_1213859 and tr_A0A179HZ55_A0A179HZ55_9HYPO_33203 are exactly identical! WARNING: Sequences tr_M4CXZ2_M4CXZ2_BRARP_51351 and tr_A0A0D3EHP2_A0A0D3EHP2_BRAOL_109376 are exactly identical! WARNING: Sequences tr_N4VAH3_N4VAH3_COLOR_1213857 and tr_A0A162PY59_A0A162PY59_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_N1Q9E9_N1Q9E9_PSEFD_383855 and tr_A0A139HPL6_A0A139HPL6_9PEZI_321146 are exactly identical! WARNING: Sequences tr_A0A3B1JKC0_A0A3B1JKC0_ASTMX_7994 and tr_A0A2D0PZK4_A0A2D0PZK4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_W5KSZ6_W5KSZ6_ASTMX_7994 and tr_A0A2D0SMA7_A0A2D0SMA7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_W9XHC5_W9XHC5_9EURO_1182542 and tr_A0A0D2BLE9_A0A0D2BLE9_9EURO_215243 are exactly identical! WARNING: Sequences tr_A0A015IFT9_A0A015IFT9_9GLOM_1432141 and tr_A0A2I1DUR9_A0A2I1DUR9_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015IFT9_A0A015IFT9_9GLOM_1432141 and tr_A0A2H5SXT3_A0A2H5SXT3_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015IFT9_A0A015IFT9_9GLOM_1432141 and tr_A0A2Z6S093_A0A2Z6S093_9GLOM_94130 are exactly identical! WARNING: Sequences tr_A0A015JUW3_A0A015JUW3_9GLOM_1432141 and tr_A0A2I1FUU1_A0A2I1FUU1_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015JUW3_A0A015JUW3_9GLOM_1432141 and tr_A0A2H5U8E4_A0A2H5U8E4_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015JUW3_A0A015JUW3_9GLOM_1432141 and tr_A0A2Z6Q1C2_A0A2Z6Q1C2_9GLOM_94130 are exactly identical! WARNING: Sequences tr_A0A067EEX7_A0A067EEX7_CITSI_2711 and tr_V4T2M9_V4T2M9_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067EEX7_A0A067EEX7_CITSI_2711 and tr_A0A0D2TSD3_A0A0D2TSD3_GOSRA_29730 are exactly identical! WARNING: Sequences tr_A0A067EEX7_A0A067EEX7_CITSI_2711 and tr_A0A1U8M9X6_A0A1U8M9X6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A067EEX7_A0A067EEX7_CITSI_2711 and tr_A0A2H5NU76_A0A2H5NU76_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067KZL5_A0A067KZL5_JATCU_180498 and tr_A0A2G5EW31_A0A2G5EW31_AQUCA_218851 are exactly identical! WARNING: Sequences tr_A0A074WRG4_A0A074WRG4_9PEZI_1043004 and tr_A0A074Y6N2_A0A074Y6N2_9PEZI_1043005 are exactly identical! WARNING: Sequences tr_A0A074WRG4_A0A074WRG4_9PEZI_1043004 and tr_A0A074VHD5_A0A074VHD5_9PEZI_1043003 are exactly identical! WARNING: Sequences tr_A0A074WRG4_A0A074WRG4_9PEZI_1043004 and tr_A0A074XI53_A0A074XI53_AURPU_1043002 are exactly identical! WARNING: Sequences tr_A0A0A2IR50_A0A0A2IR50_PENEN_27334 and tr_W6PZK6_W6PZK6_PENRF_1365484 are exactly identical! WARNING: Sequences tr_A0A0A2IR50_A0A0A2IR50_PENEN_27334 and tr_A0A0M8PBI7_A0A0M8PBI7_9EURO_229535 are exactly identical! WARNING: Sequences tr_A0A0A2IR50_A0A0A2IR50_PENEN_27334 and tr_A0A0G4PGW7_A0A0G4PGW7_PENCA_1429867 are exactly identical! WARNING: Sequences tr_A0A0A2IR50_A0A0A2IR50_PENEN_27334 and tr_A0A101MQ13_A0A101MQ13_9EURO_48697 are exactly identical! WARNING: Sequences tr_A0A0A2IR50_A0A0A2IR50_PENEN_27334 and tr_A0A135LLB0_A0A135LLB0_PENPA_5078 are exactly identical! WARNING: Sequences tr_A0A0A2IR50_A0A0A2IR50_PENEN_27334 and tr_A0A1V6P2F7_A0A1V6P2F7_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A0A2IR50_A0A0A2IR50_PENEN_27334 and tr_A0A1V6SED2_A0A1V6SED2_9EURO_29845 are exactly identical! WARNING: Sequences tr_A0A0A2IR50_A0A0A2IR50_PENEN_27334 and tr_A0A1V6QS22_A0A1V6QS22_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A0A2IR50_A0A0A2IR50_PENEN_27334 and tr_A0A1V6YZ40_A0A1V6YZ40_PENNA_60175 are exactly identical! WARNING: Sequences tr_A0A0B4HB13_A0A0B4HB13_METMF_1276143 and tr_A0A0D9P265_A0A0D9P265_METAN_1291518 are exactly identical! WARNING: Sequences tr_A0A151MNQ3_A0A151MNQ3_ALLMI_8496 and tr_A0A1U7SU10_A0A1U7SU10_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N151_A0A151N151_ALLMI_8496 and tr_A0A3Q0GIB3_A0A3Q0GIB3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NZU4_A0A151NZU4_ALLMI_8496 and tr_A0A1U8CUE3_A0A1U8CUE3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0D2GBC3_A0A0D2GBC3_9EURO_1442368 and tr_A0A0D2H4U9_A0A0D2H4U9_9EURO_1442371 are exactly identical! WARNING: Sequences tr_A0A0D2GBC3_A0A0D2GBC3_9EURO_1442368 and tr_A0A0D2AQK9_A0A0D2AQK9_9EURO_569365 are exactly identical! WARNING: Sequences tr_A0A091JNV5_A0A091JNV5_EGRGA_188379 and tr_A0A091V3G9_A0A091V3G9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A0L9U7G8_A0A0L9U7G8_PHAAN_3914 and tr_A0A1S3TBJ1_A0A1S3TBJ1_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A091VSC8_A0A091VSC8_NIPNI_128390 and tr_A0A087REC2_A0A087REC2_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VSC8_A0A091VSC8_NIPNI_128390 and tr_A0A093G7R7_A0A093G7R7_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A166VTC5_A0A166VTC5_9PEZI_708197 and tr_A0A1J7JV58_A0A1J7JV58_9PEZI_1408157 are exactly identical! WARNING: Sequences tr_A0A1S4CVE2_A0A1S4CVE2_TOBAC_4097 and tr_A0A1U7V9X7_A0A1U7V9X7_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3LGQ3_A0A1S3LGQ3_SALSA_8030 and tr_A0A060YB14_A0A060YB14_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MVS0_A0A1S3MVS0_SALSA_8030 and tr_A0A060XEG6_A0A060XEG6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3SUS9_A0A1S3SUS9_SALSA_8030 and tr_A0A060XR48_A0A060XR48_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1J9PHK8_A0A1J9PHK8_9EURO_1447872 and tr_A0A2B7Z9M4_A0A2B7Z9M4_9EURO_73230 are exactly identical! WARNING: Sequences tr_A0A1U8A8G5_A0A1U8A8G5_NELNU_4432 and tr_A0A2G5F4B4_A0A2G5F4B4_AQUCA_218851 are exactly identical! WARNING: Sequences tr_A0A2G5HDE0_A0A2G5HDE0_CERBT_122368 and tr_A0A2I0RUG3_A0A2I0RUG3_9PEZI_348901 are exactly identical! WARNING: Sequences tr_A0A2G5HDE0_A0A2G5HDE0_CERBT_122368 and tr_A0A2S6C584_A0A2S6C584_9PEZI_357750 are exactly identical! WARNING: Sequences tr_A0A2J6TII2_A0A2J6TII2_9HELO_1095630 and tr_A0A2J6RC30_A0A2J6RC30_9HELO_1149755 are exactly identical! WARNING: Sequences tr_A0A2P5FRQ8_A0A2P5FRQ8_TREOI_63057 and tr_A0A2P5D2S4_A0A2P5D2S4_PARAD_3476 are exactly identical! WARNING: Sequences tr_A0A103Y6G6_A0A103Y6G6_CYNCS_59895 and tr_A0A103Y6H6_A0A103Y6H6_CYNCS_59895 are exactly identical! WARNING: Duplicate sequences found: 384 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EQ8/3_mltree/Q96EQ8.raxml.reduced.phy Alignment comprises 1 partitions and 12 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 12 / 12 Gaps: 1.07 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EQ8/3_mltree/Q96EQ8.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 668 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 12 / 960 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -11943.806723] Initial branch length optimization [00:00:00 -9429.804459] Model parameter optimization (eps = 10.000000) [00:00:10 -9238.760239] AUTODETECT spr round 1 (radius: 5) [00:00:32 -6522.605223] AUTODETECT spr round 2 (radius: 10) [00:00:57 -4831.179902] AUTODETECT spr round 3 (radius: 15) [00:01:23 -4002.764717] AUTODETECT spr round 4 (radius: 20) [00:02:01 -3247.609015] AUTODETECT spr round 5 (radius: 25) [00:02:32 -3074.106796] SPR radius for FAST iterations: 25 (autodetect) [00:02:32 -3074.106796] Model parameter optimization (eps = 3.000000) [00:02:37 -3058.450116] FAST spr round 1 (radius: 25) [00:03:03 -2655.914133] FAST spr round 2 (radius: 25) [00:03:27 -2638.596267] FAST spr round 3 (radius: 25) [00:03:50 -2638.428987] FAST spr round 4 (radius: 25) [00:04:13 -2638.428934] Model parameter optimization (eps = 1.000000) [00:04:15 -2637.589503] SLOW spr round 1 (radius: 5) [00:04:40 -2608.686286] SLOW spr round 2 (radius: 5) [00:05:04 -2608.683154] SLOW spr round 3 (radius: 10) [00:05:29 -2591.899232] SLOW spr round 4 (radius: 5) [00:05:55 -2577.683477] SLOW spr round 5 (radius: 5) [00:06:20 -2577.125053] SLOW spr round 6 (radius: 5) [00:06:45 -2577.116552] SLOW spr round 7 (radius: 10) [00:07:10 -2577.116547] SLOW spr round 8 (radius: 15) [00:07:39 -2553.292765] SLOW spr round 9 (radius: 5) [00:08:07 -2551.494149] SLOW spr round 10 (radius: 5) [00:08:32 -2551.493018] SLOW spr round 11 (radius: 10) [00:08:58 -2551.492934] SLOW spr round 12 (radius: 15) [00:09:27 -2550.321324] SLOW spr round 13 (radius: 5) [00:09:54 -2550.321280] SLOW spr round 14 (radius: 10) [00:10:20 -2547.517491] SLOW spr round 15 (radius: 5) [00:10:45 -2547.517488] SLOW spr round 16 (radius: 10) [00:11:11 -2547.517485] SLOW spr round 17 (radius: 15) [00:11:39 -2547.517484] SLOW spr round 18 (radius: 20) [00:12:14 -2536.566850] SLOW spr round 19 (radius: 5) [00:12:41 -2520.382594] SLOW spr round 20 (radius: 5) [00:13:06 -2517.605047] SLOW spr round 21 (radius: 5) [00:13:30 -2517.605009] SLOW spr round 22 (radius: 10) [00:13:55 -2517.605008] SLOW spr round 23 (radius: 15) [00:14:23 -2516.911540] SLOW spr round 24 (radius: 5) [00:14:50 -2516.911540] SLOW spr round 25 (radius: 10) [00:15:15 -2516.911539] SLOW spr round 26 (radius: 15) [00:15:43 -2516.911539] SLOW spr round 27 (radius: 20) [00:16:16 -2514.711618] SLOW spr round 28 (radius: 5) [00:16:44 -2514.711600] SLOW spr round 29 (radius: 10) [00:17:09 -2514.711600] SLOW spr round 30 (radius: 15) [00:17:37 -2514.711599] SLOW spr round 31 (radius: 20) [00:18:11 -2514.711599] SLOW spr round 32 (radius: 25) [00:18:48 -2502.228474] SLOW spr round 33 (radius: 5) [00:19:15 -2502.167358] SLOW spr round 34 (radius: 10) [00:19:41 -2502.152024] SLOW spr round 35 (radius: 15) [00:20:08 -2502.152024] SLOW spr round 36 (radius: 20) [00:20:42 -2496.246756] SLOW spr round 37 (radius: 5) [00:21:09 -2496.244022] SLOW spr round 38 (radius: 10) [00:21:35 -2496.187711] SLOW spr round 39 (radius: 15) [00:22:02 -2496.187110] SLOW spr round 40 (radius: 20) [00:22:37 -2496.187110] SLOW spr round 41 (radius: 25) [00:23:14 -2496.187110] Model parameter optimization (eps = 0.100000) [00:23:25] ML tree search #1, logLikelihood: -2491.110394 [00:23:25 -12078.937196] Initial branch length optimization [00:23:26 -9388.564870] Model parameter optimization (eps = 10.000000) [00:23:35 -9197.010450] AUTODETECT spr round 1 (radius: 5) [00:23:57 -6790.185858] AUTODETECT spr round 2 (radius: 10) [00:24:22 -4757.849110] AUTODETECT spr round 3 (radius: 15) [00:24:50 -3919.356856] AUTODETECT spr round 4 (radius: 20) [00:25:30 -3383.927010] AUTODETECT spr round 5 (radius: 25) [00:25:58 -3259.092660] SPR radius for FAST iterations: 25 (autodetect) [00:25:58 -3259.092660] Model parameter optimization (eps = 3.000000) [00:26:07 -3246.722983] FAST spr round 1 (radius: 25) [00:26:32 -2837.241941] FAST spr round 2 (radius: 25) [00:26:55 -2762.512546] FAST spr round 3 (radius: 25) [00:27:18 -2759.739256] FAST spr round 4 (radius: 25) [00:27:41 -2759.735456] Model parameter optimization (eps = 1.000000) [00:27:46 -2749.428435] SLOW spr round 1 (radius: 5) [00:28:10 -2749.417042] SLOW spr round 2 (radius: 10) [00:28:35 -2749.417034] SLOW spr round 3 (radius: 15) [00:29:02 -2745.297409] SLOW spr round 4 (radius: 5) [00:29:28 -2745.202308] SLOW spr round 5 (radius: 10) [00:29:54 -2744.519759] SLOW spr round 6 (radius: 5) [00:30:19 -2744.519756] SLOW spr round 7 (radius: 10) [00:30:44 -2744.519752] SLOW spr round 8 (radius: 15) [00:31:11 -2743.684711] SLOW spr round 9 (radius: 5) [00:31:39 -2743.684693] SLOW spr round 10 (radius: 10) [00:32:05 -2743.684689] SLOW spr round 11 (radius: 15) [00:32:32 -2735.699246] SLOW spr round 12 (radius: 5) [00:33:01 -2716.681841] SLOW spr round 13 (radius: 5) [00:33:26 -2707.166547] SLOW spr round 14 (radius: 5) [00:33:51 -2707.075923] SLOW spr round 15 (radius: 10) [00:34:16 -2688.813463] SLOW spr round 16 (radius: 5) [00:34:42 -2688.642341] SLOW spr round 17 (radius: 5) [00:35:06 -2688.642139] SLOW spr round 18 (radius: 10) [00:35:31 -2688.642135] SLOW spr round 19 (radius: 15) [00:35:58 -2688.642131] SLOW spr round 20 (radius: 20) [00:36:28 -2680.612687] SLOW spr round 21 (radius: 5) [00:36:56 -2675.589053] SLOW spr round 22 (radius: 5) [00:37:22 -2675.588745] SLOW spr round 23 (radius: 10) [00:37:47 -2675.582399] SLOW spr round 24 (radius: 15) [00:38:14 -2675.526682] SLOW spr round 25 (radius: 20) [00:38:44 -2672.868515] SLOW spr round 26 (radius: 5) [00:39:12 -2672.524713] SLOW spr round 27 (radius: 5) [00:39:37 -2672.524600] SLOW spr round 28 (radius: 10) [00:40:01 -2672.524581] SLOW spr round 29 (radius: 15) [00:40:27 -2672.524577] SLOW spr round 30 (radius: 20) [00:40:57 -2672.524573] SLOW spr round 31 (radius: 25) [00:41:33 -2665.277928] SLOW spr round 32 (radius: 5) [00:42:01 -2653.837963] SLOW spr round 33 (radius: 5) [00:42:25 -2653.837006] SLOW spr round 34 (radius: 10) [00:42:50 -2646.858179] SLOW spr round 35 (radius: 5) [00:43:15 -2646.271349] SLOW spr round 36 (radius: 5) [00:43:39 -2646.271344] SLOW spr round 37 (radius: 10) [00:44:03 -2645.461287] SLOW spr round 38 (radius: 5) [00:44:28 -2645.461189] SLOW spr round 39 (radius: 10) [00:44:53 -2645.461185] SLOW spr round 40 (radius: 15) [00:45:19 -2644.659373] SLOW spr round 41 (radius: 5) [00:45:45 -2644.659369] SLOW spr round 42 (radius: 10) [00:46:11 -2644.546553] SLOW spr round 43 (radius: 5) [00:46:35 -2644.546549] SLOW spr round 44 (radius: 10) [00:47:00 -2644.546546] SLOW spr round 45 (radius: 15) [00:47:26 -2644.546542] SLOW spr round 46 (radius: 20) [00:47:57 -2643.800085] SLOW spr round 47 (radius: 5) [00:48:24 -2643.800082] SLOW spr round 48 (radius: 10) [00:48:50 -2643.800078] SLOW spr round 49 (radius: 15) [00:49:16 -2643.731027] SLOW spr round 50 (radius: 20) [00:49:47 -2643.730478] SLOW spr round 51 (radius: 25) [00:50:23 -2633.285167] SLOW spr round 52 (radius: 5) [00:50:51 -2624.819465] SLOW spr round 53 (radius: 5) [00:51:16 -2624.816054] SLOW spr round 54 (radius: 10) [00:51:40 -2624.815370] SLOW spr round 55 (radius: 15) [00:52:07 -2624.815231] SLOW spr round 56 (radius: 20) [00:52:38 -2624.815201] SLOW spr round 57 (radius: 25) [00:53:15 -2622.556594] SLOW spr round 58 (radius: 5) [00:53:42 -2594.923011] SLOW spr round 59 (radius: 5) [00:54:07 -2594.898078] SLOW spr round 60 (radius: 10) [00:54:32 -2594.896246] SLOW spr round 61 (radius: 15) [00:54:58 -2594.896230] SLOW spr round 62 (radius: 20) [00:55:30 -2594.896226] SLOW spr round 63 (radius: 25) [00:56:06 -2594.896224] Model parameter optimization (eps = 0.100000) [00:56:13] ML tree search #2, logLikelihood: -2594.254524 [00:56:13 -11992.363681] Initial branch length optimization [00:56:13 -9359.888372] Model parameter optimization (eps = 10.000000) [00:56:25 -9158.263048] AUTODETECT spr round 1 (radius: 5) [00:56:46 -6549.060072] AUTODETECT spr round 2 (radius: 10) [00:57:11 -4786.117242] AUTODETECT spr round 3 (radius: 15) [00:57:38 -3701.716664] AUTODETECT spr round 4 (radius: 20) [00:58:07 -3325.755814] AUTODETECT spr round 5 (radius: 25) [00:58:36 -3151.576722] SPR radius for FAST iterations: 25 (autodetect) [00:58:36 -3151.576722] Model parameter optimization (eps = 3.000000) [00:58:44 -3139.480034] FAST spr round 1 (radius: 25) [00:59:09 -2681.293335] FAST spr round 2 (radius: 25) [00:59:33 -2595.282492] FAST spr round 3 (radius: 25) [00:59:59 -2567.755913] FAST spr round 4 (radius: 25) [01:00:24 -2558.884773] FAST spr round 5 (radius: 25) [01:00:48 -2557.921507] FAST spr round 6 (radius: 25) [01:01:12 -2557.921459] Model parameter optimization (eps = 1.000000) [01:01:16 -2557.755625] SLOW spr round 1 (radius: 5) [01:01:41 -2545.902576] SLOW spr round 2 (radius: 5) [01:02:07 -2545.902412] SLOW spr round 3 (radius: 10) [01:02:33 -2542.427313] SLOW spr round 4 (radius: 5) [01:02:59 -2542.394862] SLOW spr round 5 (radius: 10) [01:03:25 -2542.394764] SLOW spr round 6 (radius: 15) [01:03:54 -2535.735415] SLOW spr round 7 (radius: 5) [01:04:21 -2532.505068] SLOW spr round 8 (radius: 5) [01:04:47 -2531.772417] SLOW spr round 9 (radius: 5) [01:05:11 -2531.772375] SLOW spr round 10 (radius: 10) [01:05:37 -2529.263038] SLOW spr round 11 (radius: 5) [01:06:02 -2529.262919] SLOW spr round 12 (radius: 10) [01:06:28 -2529.262870] SLOW spr round 13 (radius: 15) [01:06:55 -2526.879732] SLOW spr round 14 (radius: 5) [01:07:23 -2514.617351] SLOW spr round 15 (radius: 5) [01:07:48 -2514.617298] SLOW spr round 16 (radius: 10) [01:08:14 -2514.617250] SLOW spr round 17 (radius: 15) [01:08:41 -2514.617202] SLOW spr round 18 (radius: 20) [01:09:13 -2505.034384] SLOW spr round 19 (radius: 5) [01:09:42 -2505.034359] SLOW spr round 20 (radius: 10) [01:10:09 -2505.034328] SLOW spr round 21 (radius: 15) [01:10:37 -2504.797618] SLOW spr round 22 (radius: 5) [01:11:05 -2504.797472] SLOW spr round 23 (radius: 10) [01:11:32 -2504.797441] SLOW spr round 24 (radius: 15) [01:12:00 -2504.797410] SLOW spr round 25 (radius: 20) [01:12:32 -2504.797379] SLOW spr round 26 (radius: 25) [01:13:08 -2488.034784] SLOW spr round 27 (radius: 5) [01:13:37 -2482.855862] SLOW spr round 28 (radius: 5) [01:14:02 -2482.855860] SLOW spr round 29 (radius: 10) [01:14:28 -2482.855857] SLOW spr round 30 (radius: 15) [01:14:56 -2482.855855] SLOW spr round 31 (radius: 20) [01:15:26 -2482.855852] SLOW spr round 32 (radius: 25) [01:16:01 -2482.855850] Model parameter optimization (eps = 0.100000) [01:16:05] ML tree search #3, logLikelihood: -2482.441385 [01:16:05 -11996.473011] Initial branch length optimization [01:16:05 -9448.469810] Model parameter optimization (eps = 10.000000) [01:16:18 -9242.026294] AUTODETECT spr round 1 (radius: 5) [01:16:39 -6800.578066] AUTODETECT spr round 2 (radius: 10) [01:17:04 -5001.036229] AUTODETECT spr round 3 (radius: 15) [01:17:36 -3889.550133] AUTODETECT spr round 4 (radius: 20) [01:18:04 -3265.849827] AUTODETECT spr round 5 (radius: 25) [01:18:35 -2967.668350] SPR radius for FAST iterations: 25 (autodetect) [01:18:35 -2967.668350] Model parameter optimization (eps = 3.000000) [01:18:47 -2935.748577] FAST spr round 1 (radius: 25) [01:19:16 -2553.272330] FAST spr round 2 (radius: 25) [01:19:40 -2488.361729] FAST spr round 3 (radius: 25) [01:20:03 -2485.377801] FAST spr round 4 (radius: 25) [01:20:26 -2484.933785] FAST spr round 5 (radius: 25) [01:20:49 -2484.933600] Model parameter optimization (eps = 1.000000) [01:20:55 -2483.132078] SLOW spr round 1 (radius: 5) [01:21:19 -2482.745036] SLOW spr round 2 (radius: 5) [01:21:44 -2482.734313] SLOW spr round 3 (radius: 10) [01:22:09 -2482.705146] SLOW spr round 4 (radius: 15) [01:22:36 -2480.185017] SLOW spr round 5 (radius: 5) [01:23:04 -2475.824880] SLOW spr round 6 (radius: 5) [01:23:28 -2475.674717] SLOW spr round 7 (radius: 5) [01:23:52 -2475.674694] SLOW spr round 8 (radius: 10) [01:24:17 -2471.927559] SLOW spr round 9 (radius: 5) [01:24:42 -2471.927546] SLOW spr round 10 (radius: 10) [01:25:08 -2471.927535] SLOW spr round 11 (radius: 15) [01:25:35 -2470.810601] SLOW spr round 12 (radius: 5) [01:26:02 -2469.818374] SLOW spr round 13 (radius: 5) [01:26:27 -2469.818129] SLOW spr round 14 (radius: 10) [01:26:52 -2469.818114] SLOW spr round 15 (radius: 15) [01:27:20 -2467.997241] SLOW spr round 16 (radius: 5) [01:27:47 -2467.997203] SLOW spr round 17 (radius: 10) [01:28:13 -2467.080245] SLOW spr round 18 (radius: 5) [01:28:38 -2467.080002] SLOW spr round 19 (radius: 10) [01:29:03 -2467.079833] SLOW spr round 20 (radius: 15) [01:29:31 -2467.079831] SLOW spr round 21 (radius: 20) [01:30:03 -2449.722454] SLOW spr round 22 (radius: 5) [01:30:33 -2430.723161] SLOW spr round 23 (radius: 5) [01:31:00 -2430.721905] SLOW spr round 24 (radius: 10) [01:31:26 -2417.298708] SLOW spr round 25 (radius: 5) [01:31:53 -2417.298079] SLOW spr round 26 (radius: 10) [01:32:19 -2417.298079] SLOW spr round 27 (radius: 15) [01:32:48 -2413.606643] SLOW spr round 28 (radius: 5) [01:33:15 -2413.606605] SLOW spr round 29 (radius: 10) [01:33:42 -2413.606599] SLOW spr round 30 (radius: 15) [01:34:10 -2413.604352] SLOW spr round 31 (radius: 20) [01:34:43 -2412.595247] SLOW spr round 32 (radius: 5) [01:35:12 -2412.595124] SLOW spr round 33 (radius: 10) [01:35:39 -2412.595097] SLOW spr round 34 (radius: 15) [01:36:07 -2412.595091] SLOW spr round 35 (radius: 20) [01:36:40 -2412.595089] SLOW spr round 36 (radius: 25) [01:37:17 -2393.582971] SLOW spr round 37 (radius: 5) [01:37:45 -2389.585919] SLOW spr round 38 (radius: 5) [01:38:12 -2387.599574] SLOW spr round 39 (radius: 5) [01:38:37 -2387.599510] SLOW spr round 40 (radius: 10) [01:39:03 -2387.599506] SLOW spr round 41 (radius: 15) [01:39:31 -2385.466343] SLOW spr round 42 (radius: 5) [01:39:59 -2385.466341] SLOW spr round 43 (radius: 10) [01:40:25 -2385.466340] SLOW spr round 44 (radius: 15) [01:40:53 -2385.466340] SLOW spr round 45 (radius: 20) [01:41:25 -2385.466340] SLOW spr round 46 (radius: 25) [01:42:01 -2385.466340] Model parameter optimization (eps = 0.100000) [01:42:09] ML tree search #4, logLikelihood: -2381.824566 [01:42:09 -12085.865891] Initial branch length optimization [01:42:10 -9427.047361] Model parameter optimization (eps = 10.000000) [01:42:22 -9196.307232] AUTODETECT spr round 1 (radius: 5) [01:42:44 -6641.240855] AUTODETECT spr round 2 (radius: 10) [01:43:09 -4776.455296] AUTODETECT spr round 3 (radius: 15) [01:43:36 -3893.242327] AUTODETECT spr round 4 (radius: 20) [01:44:11 -3375.959242] AUTODETECT spr round 5 (radius: 25) [01:44:42 -3110.394857] SPR radius for FAST iterations: 25 (autodetect) [01:44:42 -3110.394857] Model parameter optimization (eps = 3.000000) [01:44:48 -3096.244745] FAST spr round 1 (radius: 25) [01:45:14 -2656.682026] FAST spr round 2 (radius: 25) [01:45:38 -2576.273692] FAST spr round 3 (radius: 25) [01:46:02 -2558.332472] FAST spr round 4 (radius: 25) [01:46:26 -2552.948506] FAST spr round 5 (radius: 25) [01:46:49 -2552.948085] Model parameter optimization (eps = 1.000000) [01:46:57 -2550.895720] SLOW spr round 1 (radius: 5) [01:47:21 -2548.911365] SLOW spr round 2 (radius: 5) [01:47:45 -2548.909684] SLOW spr round 3 (radius: 10) [01:48:09 -2541.477699] SLOW spr round 4 (radius: 5) [01:48:34 -2541.153423] SLOW spr round 5 (radius: 5) [01:48:57 -2541.152944] SLOW spr round 6 (radius: 10) [01:49:22 -2541.152497] SLOW spr round 7 (radius: 15) [01:49:49 -2500.490234] SLOW spr round 8 (radius: 5) [01:50:16 -2499.135910] SLOW spr round 9 (radius: 5) [01:50:41 -2498.406829] SLOW spr round 10 (radius: 5) [01:51:05 -2498.406719] SLOW spr round 11 (radius: 10) [01:51:30 -2498.406690] SLOW spr round 12 (radius: 15) [01:51:57 -2498.406679] SLOW spr round 13 (radius: 20) [01:52:29 -2492.534473] SLOW spr round 14 (radius: 5) [01:52:57 -2491.633050] SLOW spr round 15 (radius: 5) [01:53:21 -2491.633034] SLOW spr round 16 (radius: 10) [01:53:46 -2491.062057] SLOW spr round 17 (radius: 5) [01:54:10 -2491.062052] SLOW spr round 18 (radius: 10) [01:54:35 -2491.062047] SLOW spr round 19 (radius: 15) [01:55:02 -2491.052596] SLOW spr round 20 (radius: 20) [01:55:34 -2491.052592] SLOW spr round 21 (radius: 25) [01:56:10 -2477.297172] SLOW spr round 22 (radius: 5) [01:56:38 -2477.297167] SLOW spr round 23 (radius: 10) [01:57:04 -2477.218675] SLOW spr round 24 (radius: 15) [01:57:31 -2477.218670] SLOW spr round 25 (radius: 20) [01:58:04 -2477.218666] SLOW spr round 26 (radius: 25) [01:58:41 -2477.218661] Model parameter optimization (eps = 0.100000) [01:58:47] ML tree search #5, logLikelihood: -2476.455254 [01:58:47 -12030.261495] Initial branch length optimization [01:58:47 -9361.171668] Model parameter optimization (eps = 10.000000) [01:58:58 -9168.170944] AUTODETECT spr round 1 (radius: 5) [01:59:20 -6501.309869] AUTODETECT spr round 2 (radius: 10) [01:59:45 -4806.878808] AUTODETECT spr round 3 (radius: 15) [02:00:13 -3935.928487] AUTODETECT spr round 4 (radius: 20) [02:00:49 -3389.448422] AUTODETECT spr round 5 (radius: 25) [02:01:18 -3290.753384] SPR radius for FAST iterations: 25 (autodetect) [02:01:18 -3290.753384] Model parameter optimization (eps = 3.000000) [02:01:26 -3276.024196] FAST spr round 1 (radius: 25) [02:01:50 -2801.670338] FAST spr round 2 (radius: 25) [02:02:14 -2772.207419] FAST spr round 3 (radius: 25) [02:02:37 -2759.131003] FAST spr round 4 (radius: 25) [02:03:00 -2759.100150] Model parameter optimization (eps = 1.000000) [02:03:06 -2757.663471] SLOW spr round 1 (radius: 5) [02:03:30 -2755.240521] SLOW spr round 2 (radius: 5) [02:03:53 -2755.239480] SLOW spr round 3 (radius: 10) [02:04:17 -2729.546627] SLOW spr round 4 (radius: 5) [02:04:43 -2726.345206] SLOW spr round 5 (radius: 5) [02:05:06 -2726.344502] SLOW spr round 6 (radius: 10) [02:05:30 -2726.343784] SLOW spr round 7 (radius: 15) [02:05:57 -2705.057825] SLOW spr round 8 (radius: 5) [02:06:24 -2699.689244] SLOW spr round 9 (radius: 5) [02:06:49 -2699.688945] SLOW spr round 10 (radius: 10) [02:07:13 -2699.162829] SLOW spr round 11 (radius: 5) [02:07:38 -2699.162817] SLOW spr round 12 (radius: 10) [02:08:02 -2699.162808] SLOW spr round 13 (radius: 15) [02:08:29 -2696.310385] SLOW spr round 14 (radius: 5) [02:08:55 -2696.310363] SLOW spr round 15 (radius: 10) [02:09:20 -2695.417718] SLOW spr round 16 (radius: 5) [02:09:45 -2695.417710] SLOW spr round 17 (radius: 10) [02:10:10 -2695.417703] SLOW spr round 18 (radius: 15) [02:10:36 -2695.417695] SLOW spr round 19 (radius: 20) [02:11:08 -2682.295953] SLOW spr round 20 (radius: 5) [02:11:35 -2681.138846] SLOW spr round 21 (radius: 5) [02:12:00 -2681.138767] SLOW spr round 22 (radius: 10) [02:12:24 -2681.138759] SLOW spr round 23 (radius: 15) [02:12:50 -2673.761805] SLOW spr round 24 (radius: 5) [02:13:17 -2673.761798] SLOW spr round 25 (radius: 10) [02:13:41 -2673.656447] SLOW spr round 26 (radius: 5) [02:14:06 -2673.656442] SLOW spr round 27 (radius: 10) [02:14:30 -2673.656434] SLOW spr round 28 (radius: 15) [02:14:57 -2673.656427] SLOW spr round 29 (radius: 20) [02:15:28 -2671.075234] SLOW spr round 30 (radius: 5) [02:15:54 -2669.660318] SLOW spr round 31 (radius: 5) [02:16:19 -2669.659816] SLOW spr round 32 (radius: 10) [02:16:43 -2669.659691] SLOW spr round 33 (radius: 15) [02:17:10 -2669.659622] SLOW spr round 34 (radius: 20) [02:17:40 -2669.659580] SLOW spr round 35 (radius: 25) [02:18:17 -2643.877008] SLOW spr round 36 (radius: 5) [02:18:44 -2633.953924] SLOW spr round 37 (radius: 5) [02:19:09 -2633.953503] SLOW spr round 38 (radius: 10) [02:19:33 -2620.744978] SLOW spr round 39 (radius: 5) [02:19:58 -2613.426432] SLOW spr round 40 (radius: 5) [02:20:21 -2613.426426] SLOW spr round 41 (radius: 10) [02:20:45 -2604.949718] SLOW spr round 42 (radius: 5) [02:21:09 -2604.949712] SLOW spr round 43 (radius: 10) [02:21:33 -2604.949706] SLOW spr round 44 (radius: 15) [02:21:59 -2604.949701] SLOW spr round 45 (radius: 20) [02:22:28 -2604.949695] SLOW spr round 46 (radius: 25) [02:23:03 -2590.295477] SLOW spr round 47 (radius: 5) [02:23:30 -2566.708171] SLOW spr round 48 (radius: 5) [02:23:54 -2566.708157] SLOW spr round 49 (radius: 10) [02:24:18 -2565.941056] SLOW spr round 50 (radius: 5) [02:24:43 -2565.940669] SLOW spr round 51 (radius: 10) [02:25:06 -2565.940665] SLOW spr round 52 (radius: 15) [02:25:32 -2565.940660] SLOW spr round 53 (radius: 20) [02:26:02 -2565.940656] SLOW spr round 54 (radius: 25) [02:26:35 -2565.940651] Model parameter optimization (eps = 0.100000) [02:26:40] ML tree search #6, logLikelihood: -2565.540124 [02:26:40 -11854.775774] Initial branch length optimization [02:26:40 -9264.614870] Model parameter optimization (eps = 10.000000) [02:26:48 -9066.800282] AUTODETECT spr round 1 (radius: 5) [02:27:09 -6394.239865] AUTODETECT spr round 2 (radius: 10) [02:27:33 -4616.186468] AUTODETECT spr round 3 (radius: 15) [02:28:00 -3664.150348] AUTODETECT spr round 4 (radius: 20) [02:28:41 -3393.664024] AUTODETECT spr round 5 (radius: 25) [02:29:15 -3103.214050] SPR radius for FAST iterations: 25 (autodetect) [02:29:15 -3103.214050] Model parameter optimization (eps = 3.000000) [02:29:23 -3095.082301] FAST spr round 1 (radius: 25) [02:29:48 -2655.584580] FAST spr round 2 (radius: 25) [02:30:12 -2589.397982] FAST spr round 3 (radius: 25) [02:30:35 -2569.863341] FAST spr round 4 (radius: 25) [02:30:59 -2544.205173] FAST spr round 5 (radius: 25) [02:31:23 -2539.124219] FAST spr round 6 (radius: 25) [02:31:46 -2539.123403] Model parameter optimization (eps = 1.000000) [02:31:52 -2531.847122] SLOW spr round 1 (radius: 5) [02:32:17 -2530.603064] SLOW spr round 2 (radius: 5) [02:32:42 -2528.015125] SLOW spr round 3 (radius: 5) [02:33:06 -2528.015114] SLOW spr round 4 (radius: 10) [02:33:33 -2515.507064] SLOW spr round 5 (radius: 5) [02:34:00 -2514.415160] SLOW spr round 6 (radius: 5) [02:34:24 -2514.415157] SLOW spr round 7 (radius: 10) [02:34:50 -2512.967565] SLOW spr round 8 (radius: 5) [02:35:16 -2512.967564] SLOW spr round 9 (radius: 10) [02:35:43 -2510.749491] SLOW spr round 10 (radius: 5) [02:36:09 -2510.658308] SLOW spr round 11 (radius: 10) [02:36:36 -2510.379387] SLOW spr round 12 (radius: 5) [02:37:02 -2510.379383] SLOW spr round 13 (radius: 10) [02:37:28 -2509.981763] SLOW spr round 14 (radius: 5) [02:37:54 -2509.981762] SLOW spr round 15 (radius: 10) [02:38:21 -2509.981761] SLOW spr round 16 (radius: 15) [02:38:51 -2486.400267] SLOW spr round 17 (radius: 5) [02:39:18 -2464.122789] SLOW spr round 18 (radius: 5) [02:39:43 -2459.282584] SLOW spr round 19 (radius: 5) [02:40:07 -2459.282440] SLOW spr round 20 (radius: 10) [02:40:32 -2459.282414] SLOW spr round 21 (radius: 15) [02:41:00 -2456.850858] SLOW spr round 22 (radius: 5) [02:41:27 -2456.850841] SLOW spr round 23 (radius: 10) [02:41:52 -2456.697130] SLOW spr round 24 (radius: 5) [02:42:17 -2456.697091] SLOW spr round 25 (radius: 10) [02:42:42 -2456.697073] SLOW spr round 26 (radius: 15) [02:43:10 -2456.697056] SLOW spr round 27 (radius: 20) [02:43:43 -2437.545426] SLOW spr round 28 (radius: 5) [02:44:10 -2437.545403] SLOW spr round 29 (radius: 10) [02:44:35 -2437.545402] SLOW spr round 30 (radius: 15) [02:45:03 -2435.404318] SLOW spr round 31 (radius: 5) [02:45:30 -2435.404307] SLOW spr round 32 (radius: 10) [02:45:55 -2435.404306] SLOW spr round 33 (radius: 15) [02:46:23 -2435.404305] SLOW spr round 34 (radius: 20) [02:46:56 -2434.578177] SLOW spr round 35 (radius: 5) [02:47:23 -2434.578175] SLOW spr round 36 (radius: 10) [02:47:49 -2434.578174] SLOW spr round 37 (radius: 15) [02:48:17 -2434.578173] SLOW spr round 38 (radius: 20) [02:48:50 -2434.578172] SLOW spr round 39 (radius: 25) [02:49:26 -2422.227347] SLOW spr round 40 (radius: 5) [02:49:53 -2421.519273] SLOW spr round 41 (radius: 5) [02:50:18 -2421.518399] SLOW spr round 42 (radius: 10) [02:50:42 -2421.518176] SLOW spr round 43 (radius: 15) [02:51:10 -2421.518162] SLOW spr round 44 (radius: 20) [02:51:42 -2418.061442] SLOW spr round 45 (radius: 5) [02:52:09 -2417.127016] SLOW spr round 46 (radius: 5) [02:52:33 -2417.127015] SLOW spr round 47 (radius: 10) [02:52:57 -2417.127014] SLOW spr round 48 (radius: 15) [02:53:24 -2417.127013] SLOW spr round 49 (radius: 20) [02:53:57 -2417.127012] SLOW spr round 50 (radius: 25) [02:54:31 -2417.127011] Model parameter optimization (eps = 0.100000) [02:54:36] ML tree search #7, logLikelihood: -2416.534053 [02:54:36 -11914.110097] Initial branch length optimization [02:54:36 -9418.685134] Model parameter optimization (eps = 10.000000) [02:54:48 -9179.093363] AUTODETECT spr round 1 (radius: 5) [02:55:09 -6511.167017] AUTODETECT spr round 2 (radius: 10) [02:55:34 -4859.360725] AUTODETECT spr round 3 (radius: 15) [02:56:01 -3812.685510] AUTODETECT spr round 4 (radius: 20) [02:56:40 -3331.229777] AUTODETECT spr round 5 (radius: 25) [02:57:11 -3089.531237] SPR radius for FAST iterations: 25 (autodetect) [02:57:11 -3089.531237] Model parameter optimization (eps = 3.000000) [02:57:16 -3075.463293] FAST spr round 1 (radius: 25) [02:57:41 -2693.518404] FAST spr round 2 (radius: 25) [02:58:05 -2633.572431] FAST spr round 3 (radius: 25) [02:58:28 -2632.600398] FAST spr round 4 (radius: 25) [02:58:50 -2631.251075] FAST spr round 5 (radius: 25) [02:59:13 -2631.250516] Model parameter optimization (eps = 1.000000) [02:59:19 -2629.696269] SLOW spr round 1 (radius: 5) [02:59:43 -2623.033267] SLOW spr round 2 (radius: 5) [03:00:06 -2623.032425] SLOW spr round 3 (radius: 10) [03:00:31 -2621.617303] SLOW spr round 4 (radius: 5) [03:00:56 -2621.519512] SLOW spr round 5 (radius: 10) [03:01:21 -2619.223934] SLOW spr round 6 (radius: 5) [03:01:45 -2619.223891] SLOW spr round 7 (radius: 10) [03:02:10 -2619.223862] SLOW spr round 8 (radius: 15) [03:02:37 -2610.139545] SLOW spr round 9 (radius: 5) [03:03:04 -2584.159619] SLOW spr round 10 (radius: 5) [03:03:28 -2584.150017] SLOW spr round 11 (radius: 10) [03:03:53 -2582.019412] SLOW spr round 12 (radius: 5) [03:04:18 -2582.019379] SLOW spr round 13 (radius: 10) [03:04:43 -2582.019374] SLOW spr round 14 (radius: 15) [03:05:10 -2582.019372] SLOW spr round 15 (radius: 20) [03:05:44 -2561.018166] SLOW spr round 16 (radius: 5) [03:06:12 -2542.994707] SLOW spr round 17 (radius: 5) [03:06:37 -2531.103382] SLOW spr round 18 (radius: 5) [03:07:00 -2531.103202] SLOW spr round 19 (radius: 10) [03:07:26 -2517.412301] SLOW spr round 20 (radius: 5) [03:07:51 -2517.412235] SLOW spr round 21 (radius: 10) [03:08:15 -2517.412202] SLOW spr round 22 (radius: 15) [03:08:43 -2510.207613] SLOW spr round 23 (radius: 5) [03:09:10 -2510.207601] SLOW spr round 24 (radius: 10) [03:09:36 -2510.207593] SLOW spr round 25 (radius: 15) [03:10:03 -2510.207588] SLOW spr round 26 (radius: 20) [03:10:37 -2480.568219] SLOW spr round 27 (radius: 5) [03:11:05 -2470.722182] SLOW spr round 28 (radius: 5) [03:11:30 -2470.722158] SLOW spr round 29 (radius: 10) [03:11:55 -2468.060476] SLOW spr round 30 (radius: 5) [03:12:20 -2468.060475] SLOW spr round 31 (radius: 10) [03:12:46 -2468.060475] SLOW spr round 32 (radius: 15) [03:13:13 -2468.060475] SLOW spr round 33 (radius: 20) [03:13:46 -2468.060474] SLOW spr round 34 (radius: 25) [03:14:23 -2445.618088] SLOW spr round 35 (radius: 5) [03:14:51 -2435.741580] SLOW spr round 36 (radius: 5) [03:15:16 -2435.641616] SLOW spr round 37 (radius: 10) [03:15:41 -2435.640598] SLOW spr round 38 (radius: 15) [03:16:08 -2435.640536] SLOW spr round 39 (radius: 20) [03:16:42 -2435.640531] SLOW spr round 40 (radius: 25) [03:17:19 -2435.062129] SLOW spr round 41 (radius: 5) [03:17:47 -2435.062118] SLOW spr round 42 (radius: 10) [03:18:12 -2435.062117] SLOW spr round 43 (radius: 15) [03:18:40 -2435.062117] SLOW spr round 44 (radius: 20) [03:19:13 -2435.062117] SLOW spr round 45 (radius: 25) [03:19:51 -2435.062117] Model parameter optimization (eps = 0.100000) [03:19:59] ML tree search #8, logLikelihood: -2434.454314 [03:19:59 -12004.726207] Initial branch length optimization [03:20:00 -9377.246947] Model parameter optimization (eps = 10.000000) [03:20:12 -9151.395023] AUTODETECT spr round 1 (radius: 5) [03:20:33 -6489.608742] AUTODETECT spr round 2 (radius: 10) [03:20:58 -4843.196901] AUTODETECT spr round 3 (radius: 15) [03:21:26 -3860.921765] AUTODETECT spr round 4 (radius: 20) [03:22:01 -3424.392932] AUTODETECT spr round 5 (radius: 25) [03:22:33 -3074.183372] SPR radius for FAST iterations: 25 (autodetect) [03:22:33 -3074.183372] Model parameter optimization (eps = 3.000000) [03:22:39 -3056.224474] FAST spr round 1 (radius: 25) [03:23:06 -2579.302572] FAST spr round 2 (radius: 25) [03:23:32 -2534.595039] FAST spr round 3 (radius: 25) [03:23:57 -2529.115533] FAST spr round 4 (radius: 25) [03:24:22 -2501.835275] FAST spr round 5 (radius: 25) [03:24:46 -2501.835031] Model parameter optimization (eps = 1.000000) [03:24:49 -2501.317035] SLOW spr round 1 (radius: 5) [03:25:16 -2473.836733] SLOW spr round 2 (radius: 5) [03:25:41 -2473.834232] SLOW spr round 3 (radius: 10) [03:26:08 -2472.669432] SLOW spr round 4 (radius: 5) [03:26:36 -2470.429007] SLOW spr round 5 (radius: 5) [03:27:01 -2470.427524] SLOW spr round 6 (radius: 10) [03:27:27 -2470.427489] SLOW spr round 7 (radius: 15) [03:27:58 -2467.584204] SLOW spr round 8 (radius: 5) [03:28:26 -2454.698901] SLOW spr round 9 (radius: 5) [03:28:52 -2454.698251] SLOW spr round 10 (radius: 10) [03:29:19 -2453.322502] SLOW spr round 11 (radius: 5) [03:29:45 -2452.705759] SLOW spr round 12 (radius: 5) [03:30:10 -2452.705550] SLOW spr round 13 (radius: 10) [03:30:36 -2452.705549] SLOW spr round 14 (radius: 15) [03:31:07 -2448.998601] SLOW spr round 15 (radius: 5) [03:31:36 -2448.998591] SLOW spr round 16 (radius: 10) [03:32:02 -2448.777064] SLOW spr round 17 (radius: 5) [03:32:27 -2448.776893] SLOW spr round 18 (radius: 10) [03:32:53 -2448.776881] SLOW spr round 19 (radius: 15) [03:33:24 -2448.776879] SLOW spr round 20 (radius: 20) [03:34:08 -2438.127674] SLOW spr round 21 (radius: 5) [03:34:37 -2431.260671] SLOW spr round 22 (radius: 5) [03:35:02 -2431.260568] SLOW spr round 23 (radius: 10) [03:35:28 -2431.260564] SLOW spr round 24 (radius: 15) [03:35:58 -2430.805901] SLOW spr round 25 (radius: 5) [03:36:27 -2430.805774] SLOW spr round 26 (radius: 10) [03:36:53 -2430.805772] SLOW spr round 27 (radius: 15) [03:37:24 -2430.805772] SLOW spr round 28 (radius: 20) [03:38:07 -2427.407477] SLOW spr round 29 (radius: 5) [03:38:35 -2427.407466] SLOW spr round 30 (radius: 10) [03:39:01 -2426.845878] SLOW spr round 31 (radius: 5) [03:39:26 -2426.838618] SLOW spr round 32 (radius: 10) [03:39:52 -2426.838618] SLOW spr round 33 (radius: 15) [03:40:20 -2426.838618] SLOW spr round 34 (radius: 20) [03:41:00 -2426.838618] SLOW spr round 35 (radius: 25) [03:41:46 -2409.164434] SLOW spr round 36 (radius: 5) [03:42:13 -2396.823197] SLOW spr round 37 (radius: 5) [03:42:37 -2396.821754] SLOW spr round 38 (radius: 10) [03:43:01 -2396.820644] SLOW spr round 39 (radius: 15) [03:43:29 -2396.820511] SLOW spr round 40 (radius: 20) [03:44:08 -2396.809485] SLOW spr round 41 (radius: 25) [03:44:55 -2394.543253] SLOW spr round 42 (radius: 5) [03:45:22 -2384.240706] SLOW spr round 43 (radius: 5) [03:45:46 -2384.240447] SLOW spr round 44 (radius: 10) [03:46:10 -2384.240446] SLOW spr round 45 (radius: 15) [03:46:38 -2379.267388] SLOW spr round 46 (radius: 5) [03:47:04 -2379.267388] SLOW spr round 47 (radius: 10) [03:47:29 -2379.267388] SLOW spr round 48 (radius: 15) [03:47:57 -2379.267388] SLOW spr round 49 (radius: 20) [03:48:36 -2379.267388] SLOW spr round 50 (radius: 25) [03:49:22 -2379.267388] Model parameter optimization (eps = 0.100000) [03:49:32] ML tree search #9, logLikelihood: -2378.089142 [03:49:32 -12025.811046] Initial branch length optimization [03:49:32 -9368.808882] Model parameter optimization (eps = 10.000000) [03:49:44 -9134.763120] AUTODETECT spr round 1 (radius: 5) [03:50:05 -6592.559153] AUTODETECT spr round 2 (radius: 10) [03:50:30 -4761.982384] AUTODETECT spr round 3 (radius: 15) [03:50:57 -3959.560441] AUTODETECT spr round 4 (radius: 20) [03:51:26 -3605.801045] AUTODETECT spr round 5 (radius: 25) [03:51:57 -3288.833574] SPR radius for FAST iterations: 25 (autodetect) [03:51:57 -3288.833574] Model parameter optimization (eps = 3.000000) [03:52:03 -3279.142598] FAST spr round 1 (radius: 25) [03:52:28 -2798.403306] FAST spr round 2 (radius: 25) [03:52:52 -2727.276241] FAST spr round 3 (radius: 25) [03:53:15 -2718.664298] FAST spr round 4 (radius: 25) [03:53:38 -2718.663692] Model parameter optimization (eps = 1.000000) [03:53:48 -2689.335816] SLOW spr round 1 (radius: 5) [03:54:12 -2688.190869] SLOW spr round 2 (radius: 5) [03:54:37 -2684.565282] SLOW spr round 3 (radius: 5) [03:55:01 -2683.268513] SLOW spr round 4 (radius: 5) [03:55:25 -2683.136477] SLOW spr round 5 (radius: 5) [03:55:48 -2682.548883] SLOW spr round 6 (radius: 5) [03:56:12 -2681.871850] SLOW spr round 7 (radius: 5) [03:56:36 -2681.871178] SLOW spr round 8 (radius: 10) [03:57:01 -2672.776320] SLOW spr round 9 (radius: 5) [03:57:27 -2672.464783] SLOW spr round 10 (radius: 5) [03:57:51 -2672.463057] SLOW spr round 11 (radius: 10) [03:58:16 -2672.447576] SLOW spr round 12 (radius: 15) [03:58:44 -2645.063813] SLOW spr round 13 (radius: 5) [03:59:11 -2640.580635] SLOW spr round 14 (radius: 5) [03:59:36 -2640.154202] SLOW spr round 15 (radius: 5) [04:00:00 -2640.154195] SLOW spr round 16 (radius: 10) [04:00:25 -2640.154188] SLOW spr round 17 (radius: 15) [04:00:52 -2639.559328] SLOW spr round 18 (radius: 5) [04:01:20 -2639.277190] SLOW spr round 19 (radius: 5) [04:01:44 -2639.277185] SLOW spr round 20 (radius: 10) [04:02:09 -2638.810456] SLOW spr round 21 (radius: 5) [04:02:35 -2638.810440] SLOW spr round 22 (radius: 10) [04:03:00 -2638.810436] SLOW spr round 23 (radius: 15) [04:03:27 -2638.810432] SLOW spr round 24 (radius: 20) [04:04:00 -2627.761183] SLOW spr round 25 (radius: 5) [04:04:28 -2627.453404] SLOW spr round 26 (radius: 5) [04:04:53 -2627.452557] SLOW spr round 27 (radius: 10) [04:05:18 -2627.452520] SLOW spr round 28 (radius: 15) [04:05:46 -2627.320848] SLOW spr round 29 (radius: 5) [04:06:13 -2627.320844] SLOW spr round 30 (radius: 10) [04:06:39 -2626.972001] SLOW spr round 31 (radius: 5) [04:07:04 -2626.971995] SLOW spr round 32 (radius: 10) [04:07:29 -2626.971993] SLOW spr round 33 (radius: 15) [04:07:57 -2626.971991] SLOW spr round 34 (radius: 20) [04:08:30 -2594.505969] SLOW spr round 35 (radius: 5) [04:08:59 -2585.239684] SLOW spr round 36 (radius: 5) [04:09:24 -2585.239680] SLOW spr round 37 (radius: 10) [04:09:49 -2585.239679] SLOW spr round 38 (radius: 15) [04:10:18 -2575.917137] SLOW spr round 39 (radius: 5) [04:10:47 -2567.982524] SLOW spr round 40 (radius: 5) [04:11:12 -2560.594610] SLOW spr round 41 (radius: 5) [04:11:37 -2560.594609] SLOW spr round 42 (radius: 10) [04:12:03 -2560.594609] SLOW spr round 43 (radius: 15) [04:12:32 -2560.594608] SLOW spr round 44 (radius: 20) [04:13:06 -2560.594607] SLOW spr round 45 (radius: 25) [04:13:48 -2477.668408] SLOW spr round 46 (radius: 5) [04:14:18 -2411.426754] SLOW spr round 47 (radius: 5) [04:14:46 -2409.166775] SLOW spr round 48 (radius: 5) [04:15:11 -2409.166247] SLOW spr round 49 (radius: 10) [04:15:38 -2409.165976] SLOW spr round 50 (radius: 15) [04:16:09 -2374.403109] SLOW spr round 51 (radius: 5) [04:16:38 -2358.653781] SLOW spr round 52 (radius: 5) [04:17:03 -2358.653742] SLOW spr round 53 (radius: 10) [04:17:28 -2358.653741] SLOW spr round 54 (radius: 15) [04:17:58 -2352.569210] SLOW spr round 55 (radius: 5) [04:18:26 -2351.651279] SLOW spr round 56 (radius: 5) [04:18:52 -2351.651279] SLOW spr round 57 (radius: 10) [04:19:18 -2351.651278] SLOW spr round 58 (radius: 15) [04:19:47 -2351.651277] SLOW spr round 59 (radius: 20) [04:20:27 -2345.733797] SLOW spr round 60 (radius: 5) [04:20:54 -2344.273839] SLOW spr round 61 (radius: 5) [04:21:20 -2344.273520] SLOW spr round 62 (radius: 10) [04:21:45 -2344.273502] SLOW spr round 63 (radius: 15) [04:22:15 -2344.273500] SLOW spr round 64 (radius: 20) [04:22:52 -2344.273500] SLOW spr round 65 (radius: 25) [04:23:39 -2341.199018] SLOW spr round 66 (radius: 5) [04:24:06 -2341.199017] SLOW spr round 67 (radius: 10) [04:24:32 -2341.199016] SLOW spr round 68 (radius: 15) [04:25:01 -2341.199015] SLOW spr round 69 (radius: 20) [04:25:39 -2341.199015] SLOW spr round 70 (radius: 25) [04:26:24 -2341.119904] Model parameter optimization (eps = 0.100000) [04:26:30] ML tree search #10, logLikelihood: -2340.765518 [04:26:30 -11979.014831] Initial branch length optimization [04:26:31 -9467.321395] Model parameter optimization (eps = 10.000000) [04:26:43 -9270.646021] AUTODETECT spr round 1 (radius: 5) [04:27:05 -6506.105921] AUTODETECT spr round 2 (radius: 10) [04:27:30 -4580.626355] AUTODETECT spr round 3 (radius: 15) [04:27:58 -3525.902122] AUTODETECT spr round 4 (radius: 20) [04:28:26 -3259.568257] AUTODETECT spr round 5 (radius: 25) [04:28:57 -3161.805305] SPR radius for FAST iterations: 25 (autodetect) [04:28:57 -3161.805305] Model parameter optimization (eps = 3.000000) [04:29:03 -3146.634723] FAST spr round 1 (radius: 25) [04:29:27 -2773.438103] FAST spr round 2 (radius: 25) [04:29:50 -2752.169447] FAST spr round 3 (radius: 25) [04:30:13 -2750.878116] FAST spr round 4 (radius: 25) [04:30:35 -2750.877822] Model parameter optimization (eps = 1.000000) [04:30:37 -2750.645526] SLOW spr round 1 (radius: 5) [04:31:01 -2721.539095] SLOW spr round 2 (radius: 5) [04:31:25 -2721.538689] SLOW spr round 3 (radius: 10) [04:31:50 -2721.042106] SLOW spr round 4 (radius: 5) [04:32:15 -2720.459548] SLOW spr round 5 (radius: 5) [04:32:39 -2720.459208] SLOW spr round 6 (radius: 10) [04:33:04 -2720.458911] SLOW spr round 7 (radius: 15) [04:33:32 -2696.379785] SLOW spr round 8 (radius: 5) [04:34:00 -2684.814400] SLOW spr round 9 (radius: 5) [04:34:25 -2684.763508] SLOW spr round 10 (radius: 10) [04:34:49 -2684.762833] SLOW spr round 11 (radius: 15) [04:35:17 -2668.713492] SLOW spr round 12 (radius: 5) [04:35:45 -2665.119551] SLOW spr round 13 (radius: 5) [04:36:10 -2665.102340] SLOW spr round 14 (radius: 10) [04:36:35 -2665.101866] SLOW spr round 15 (radius: 15) [04:37:02 -2665.101389] SLOW spr round 16 (radius: 20) [04:37:33 -2655.377990] SLOW spr round 17 (radius: 5) [04:38:01 -2651.622786] SLOW spr round 18 (radius: 5) [04:38:26 -2651.622249] SLOW spr round 19 (radius: 10) [04:38:51 -2649.871915] SLOW spr round 20 (radius: 5) [04:39:16 -2649.871389] SLOW spr round 21 (radius: 10) [04:39:41 -2649.870853] SLOW spr round 22 (radius: 15) [04:40:08 -2649.870305] SLOW spr round 23 (radius: 20) [04:40:39 -2649.540255] SLOW spr round 24 (radius: 5) [04:41:06 -2649.539683] SLOW spr round 25 (radius: 10) [04:41:31 -2649.539097] SLOW spr round 26 (radius: 15) [04:41:58 -2649.538499] SLOW spr round 27 (radius: 20) [04:42:28 -2649.537886] SLOW spr round 28 (radius: 25) [04:43:03 -2607.444640] SLOW spr round 29 (radius: 5) [04:43:31 -2552.736522] SLOW spr round 30 (radius: 5) [04:43:56 -2545.225513] SLOW spr round 31 (radius: 5) [04:44:20 -2538.691537] SLOW spr round 32 (radius: 5) [04:44:44 -2538.691491] SLOW spr round 33 (radius: 10) [04:45:09 -2538.691471] SLOW spr round 34 (radius: 15) [04:45:36 -2530.055352] SLOW spr round 35 (radius: 5) [04:46:03 -2529.253632] SLOW spr round 36 (radius: 5) [04:46:27 -2528.980980] SLOW spr round 37 (radius: 5) [04:46:51 -2528.980977] SLOW spr round 38 (radius: 10) [04:47:15 -2528.980975] SLOW spr round 39 (radius: 15) [04:47:42 -2528.980972] SLOW spr round 40 (radius: 20) [04:48:13 -2526.468231] SLOW spr round 41 (radius: 5) [04:48:40 -2526.466687] SLOW spr round 42 (radius: 10) [04:49:06 -2526.466641] SLOW spr round 43 (radius: 15) [04:49:32 -2526.466637] SLOW spr round 44 (radius: 20) [04:50:03 -2526.466634] SLOW spr round 45 (radius: 25) [04:50:37 -2525.514287] SLOW spr round 46 (radius: 5) [04:51:05 -2525.514283] SLOW spr round 47 (radius: 10) [04:51:30 -2525.514281] SLOW spr round 48 (radius: 15) [04:51:57 -2525.514278] SLOW spr round 49 (radius: 20) [04:52:27 -2525.514276] SLOW spr round 50 (radius: 25) [04:53:01 -2525.514273] Model parameter optimization (eps = 0.100000) [04:53:06] ML tree search #11, logLikelihood: -2525.067202 [04:53:06 -11982.013633] Initial branch length optimization [04:53:07 -9390.161027] Model parameter optimization (eps = 10.000000) [04:53:18 -9190.686909] AUTODETECT spr round 1 (radius: 5) [04:53:39 -6556.179339] AUTODETECT spr round 2 (radius: 10) [04:54:04 -4754.246026] AUTODETECT spr round 3 (radius: 15) [04:54:31 -3690.107666] AUTODETECT spr round 4 (radius: 20) [04:55:04 -3229.136401] AUTODETECT spr round 5 (radius: 25) [04:55:33 -3092.960013] SPR radius for FAST iterations: 25 (autodetect) [04:55:33 -3092.960013] Model parameter optimization (eps = 3.000000) [04:55:41 -3072.206256] FAST spr round 1 (radius: 25) [04:56:06 -2618.932876] FAST spr round 2 (radius: 25) [04:56:29 -2594.144713] FAST spr round 3 (radius: 25) [04:56:52 -2593.992249] FAST spr round 4 (radius: 25) [04:57:15 -2593.991787] Model parameter optimization (eps = 1.000000) [04:57:18 -2593.036316] SLOW spr round 1 (radius: 5) [04:57:43 -2591.547240] SLOW spr round 2 (radius: 5) [04:58:06 -2591.546957] SLOW spr round 3 (radius: 10) [04:58:30 -2577.866468] SLOW spr round 4 (radius: 5) [04:58:55 -2573.604030] SLOW spr round 5 (radius: 5) [04:59:19 -2572.823725] SLOW spr round 6 (radius: 5) [04:59:42 -2572.823709] SLOW spr round 7 (radius: 10) [05:00:07 -2572.823709] SLOW spr round 8 (radius: 15) [05:00:33 -2566.658918] SLOW spr round 9 (radius: 5) [05:01:00 -2566.202595] SLOW spr round 10 (radius: 5) [05:01:24 -2566.202321] SLOW spr round 11 (radius: 10) [05:01:49 -2566.202205] SLOW spr round 12 (radius: 15) [05:02:16 -2563.748435] SLOW spr round 13 (radius: 5) [05:02:42 -2563.667620] SLOW spr round 14 (radius: 10) [05:03:07 -2557.012784] SLOW spr round 15 (radius: 5) [05:03:32 -2556.733910] SLOW spr round 16 (radius: 5) [05:03:56 -2556.733910] SLOW spr round 17 (radius: 10) [05:04:20 -2556.733910] SLOW spr round 18 (radius: 15) [05:04:47 -2556.733910] SLOW spr round 19 (radius: 20) [05:05:20 -2526.828480] SLOW spr round 20 (radius: 5) [05:05:48 -2505.708063] SLOW spr round 21 (radius: 5) [05:06:14 -2505.697932] SLOW spr round 22 (radius: 10) [05:06:40 -2505.697269] SLOW spr round 23 (radius: 15) [05:07:08 -2502.092229] SLOW spr round 24 (radius: 5) [05:07:36 -2500.237115] SLOW spr round 25 (radius: 5) [05:08:01 -2500.237063] SLOW spr round 26 (radius: 10) [05:08:27 -2500.229355] SLOW spr round 27 (radius: 15) [05:08:55 -2500.228888] SLOW spr round 28 (radius: 20) [05:09:28 -2488.559115] SLOW spr round 29 (radius: 5) [05:09:57 -2488.317339] SLOW spr round 30 (radius: 5) [05:10:22 -2488.316816] SLOW spr round 31 (radius: 10) [05:10:47 -2488.316291] SLOW spr round 32 (radius: 15) [05:11:16 -2485.739465] SLOW spr round 33 (radius: 5) [05:11:43 -2485.738764] SLOW spr round 34 (radius: 10) [05:12:09 -2485.738046] SLOW spr round 35 (radius: 15) [05:12:37 -2482.246943] SLOW spr round 36 (radius: 5) [05:13:05 -2482.246162] SLOW spr round 37 (radius: 10) [05:13:31 -2482.245704] SLOW spr round 38 (radius: 15) [05:13:58 -2482.245704] SLOW spr round 39 (radius: 20) [05:14:30 -2481.311062] SLOW spr round 40 (radius: 5) [05:14:58 -2481.311062] SLOW spr round 41 (radius: 10) [05:15:24 -2481.311062] SLOW spr round 42 (radius: 15) [05:15:51 -2481.311062] SLOW spr round 43 (radius: 20) [05:16:23 -2481.311062] SLOW spr round 44 (radius: 25) [05:17:00 -2480.211733] SLOW spr round 45 (radius: 5) [05:17:28 -2479.200172] SLOW spr round 46 (radius: 5) [05:17:53 -2479.200159] SLOW spr round 47 (radius: 10) [05:18:18 -2479.200159] SLOW spr round 48 (radius: 15) [05:18:46 -2479.200159] SLOW spr round 49 (radius: 20) [05:19:17 -2474.604379] SLOW spr round 50 (radius: 5) [05:19:44 -2473.185316] SLOW spr round 51 (radius: 5) [05:20:09 -2467.963742] SLOW spr round 52 (radius: 5) [05:20:33 -2467.963741] SLOW spr round 53 (radius: 10) [05:20:58 -2467.963741] SLOW spr round 54 (radius: 15) [05:21:26 -2467.963741] SLOW spr round 55 (radius: 20) [05:21:56 -2467.963741] SLOW spr round 56 (radius: 25) [05:22:33 -2467.963741] Model parameter optimization (eps = 0.100000) [05:22:40] ML tree search #12, logLikelihood: -2466.762615 [05:22:40 -12146.688107] Initial branch length optimization [05:22:40 -9466.054089] Model parameter optimization (eps = 10.000000) [05:22:54 -9245.933089] AUTODETECT spr round 1 (radius: 5) [05:23:15 -6464.831455] AUTODETECT spr round 2 (radius: 10) [05:23:40 -4739.580622] AUTODETECT spr round 3 (radius: 15) [05:24:07 -3849.654450] AUTODETECT spr round 4 (radius: 20) [05:24:44 -3387.524693] AUTODETECT spr round 5 (radius: 25) [05:25:13 -3046.916362] SPR radius for FAST iterations: 25 (autodetect) [05:25:13 -3046.916362] Model parameter optimization (eps = 3.000000) [05:25:23 -3016.074212] FAST spr round 1 (radius: 25) [05:25:47 -2587.135299] FAST spr round 2 (radius: 25) [05:26:11 -2559.658650] FAST spr round 3 (radius: 25) [05:26:34 -2558.294837] FAST spr round 4 (radius: 25) [05:26:56 -2558.291912] Model parameter optimization (eps = 1.000000) [05:26:58 -2557.738075] SLOW spr round 1 (radius: 5) [05:27:23 -2529.353678] SLOW spr round 2 (radius: 5) [05:27:47 -2529.353511] SLOW spr round 3 (radius: 10) [05:28:12 -2528.628691] SLOW spr round 4 (radius: 5) [05:28:38 -2526.593382] SLOW spr round 5 (radius: 5) [05:29:02 -2526.593355] SLOW spr round 6 (radius: 10) [05:29:27 -2524.402921] SLOW spr round 7 (radius: 5) [05:29:53 -2524.402913] SLOW spr round 8 (radius: 10) [05:30:18 -2524.381685] SLOW spr round 9 (radius: 15) [05:30:46 -2519.750301] SLOW spr round 10 (radius: 5) [05:31:13 -2517.454431] SLOW spr round 11 (radius: 5) [05:31:38 -2517.451415] SLOW spr round 12 (radius: 10) [05:32:03 -2517.451352] SLOW spr round 13 (radius: 15) [05:32:30 -2517.451340] SLOW spr round 14 (radius: 20) [05:33:03 -2474.116707] SLOW spr round 15 (radius: 5) [05:33:31 -2465.275109] SLOW spr round 16 (radius: 5) [05:33:56 -2465.273463] SLOW spr round 17 (radius: 10) [05:34:21 -2463.957272] SLOW spr round 18 (radius: 5) [05:34:45 -2463.957163] SLOW spr round 19 (radius: 10) [05:35:11 -2463.957053] SLOW spr round 20 (radius: 15) [05:35:37 -2463.289764] SLOW spr round 21 (radius: 5) [05:36:03 -2463.158300] SLOW spr round 22 (radius: 5) [05:36:27 -2463.156719] SLOW spr round 23 (radius: 10) [05:36:52 -2463.156549] SLOW spr round 24 (radius: 15) [05:37:18 -2463.156424] SLOW spr round 25 (radius: 20) [05:37:50 -2463.156307] SLOW spr round 26 (radius: 25) [05:38:26 -2457.769167] SLOW spr round 27 (radius: 5) [05:38:54 -2456.218729] SLOW spr round 28 (radius: 5) [05:39:19 -2456.218590] SLOW spr round 29 (radius: 10) [05:39:44 -2456.218470] SLOW spr round 30 (radius: 15) [05:40:10 -2455.406992] SLOW spr round 31 (radius: 5) [05:40:37 -2455.406868] SLOW spr round 32 (radius: 10) [05:41:02 -2455.406746] SLOW spr round 33 (radius: 15) [05:41:29 -2455.406623] SLOW spr round 34 (radius: 20) [05:41:59 -2453.688005] SLOW spr round 35 (radius: 5) [05:42:27 -2453.687880] SLOW spr round 36 (radius: 10) [05:42:52 -2453.313909] SLOW spr round 37 (radius: 5) [05:43:17 -2453.313782] SLOW spr round 38 (radius: 10) [05:43:42 -2453.313654] SLOW spr round 39 (radius: 15) [05:44:09 -2453.313525] SLOW spr round 40 (radius: 20) [05:44:40 -2452.907747] SLOW spr round 41 (radius: 5) [05:45:07 -2452.907616] SLOW spr round 42 (radius: 10) [05:45:32 -2452.907484] SLOW spr round 43 (radius: 15) [05:45:59 -2452.907351] SLOW spr round 44 (radius: 20) [05:46:30 -2452.907216] SLOW spr round 45 (radius: 25) [05:47:06 -2452.907081] Model parameter optimization (eps = 0.100000) [05:47:10] ML tree search #13, logLikelihood: -2452.541667 [05:47:10 -11978.858037] Initial branch length optimization [05:47:11 -9450.703099] Model parameter optimization (eps = 10.000000) [05:47:21 -9247.540735] AUTODETECT spr round 1 (radius: 5) [05:47:43 -6676.428218] AUTODETECT spr round 2 (radius: 10) [05:48:08 -4824.472255] AUTODETECT spr round 3 (radius: 15) [05:48:35 -3917.379969] AUTODETECT spr round 4 (radius: 20) [05:49:09 -3431.756666] AUTODETECT spr round 5 (radius: 25) [05:49:37 -3276.141456] SPR radius for FAST iterations: 25 (autodetect) [05:49:37 -3276.141456] Model parameter optimization (eps = 3.000000) [05:49:46 -3255.898786] FAST spr round 1 (radius: 25) [05:50:11 -2780.723556] FAST spr round 2 (radius: 25) [05:50:35 -2705.048232] FAST spr round 3 (radius: 25) [05:50:58 -2674.704405] FAST spr round 4 (radius: 25) [05:51:22 -2673.764786] FAST spr round 5 (radius: 25) [05:51:45 -2673.764745] Model parameter optimization (eps = 1.000000) [05:51:48 -2673.150254] SLOW spr round 1 (radius: 5) [05:52:12 -2642.637386] SLOW spr round 2 (radius: 5) [05:52:36 -2642.637127] SLOW spr round 3 (radius: 10) [05:53:01 -2595.143644] SLOW spr round 4 (radius: 5) [05:53:27 -2591.902100] SLOW spr round 5 (radius: 5) [05:53:52 -2591.901869] SLOW spr round 6 (radius: 10) [05:54:17 -2591.901751] SLOW spr round 7 (radius: 15) [05:54:47 -2565.803588] SLOW spr round 8 (radius: 5) [05:55:14 -2561.168329] SLOW spr round 9 (radius: 5) [05:55:39 -2561.168076] SLOW spr round 10 (radius: 10) [05:56:03 -2561.168053] SLOW spr round 11 (radius: 15) [05:56:31 -2561.168035] SLOW spr round 12 (radius: 20) [05:57:04 -2555.702270] SLOW spr round 13 (radius: 5) [05:57:31 -2555.514637] SLOW spr round 14 (radius: 5) [05:57:55 -2555.513121] SLOW spr round 15 (radius: 10) [05:58:19 -2555.513114] SLOW spr round 16 (radius: 15) [05:58:47 -2555.513107] SLOW spr round 17 (radius: 20) [05:59:20 -2555.513100] SLOW spr round 18 (radius: 25) [05:59:57 -2546.557456] SLOW spr round 19 (radius: 5) [06:00:26 -2543.193491] SLOW spr round 20 (radius: 5) [06:00:51 -2543.190606] SLOW spr round 21 (radius: 10) [06:01:16 -2543.190020] SLOW spr round 22 (radius: 15) [06:01:44 -2543.189849] SLOW spr round 23 (radius: 20) [06:02:17 -2543.189687] SLOW spr round 24 (radius: 25) [06:02:54 -2543.189661] Model parameter optimization (eps = 0.100000) [06:03:00] ML tree search #14, logLikelihood: -2541.929952 [06:03:00 -11886.430916] Initial branch length optimization [06:03:00 -9346.007539] Model parameter optimization (eps = 10.000000) [06:03:11 -9120.679990] AUTODETECT spr round 1 (radius: 5) [06:03:33 -6459.691011] AUTODETECT spr round 2 (radius: 10) [06:03:58 -4585.446634] AUTODETECT spr round 3 (radius: 15) [06:04:26 -3645.772898] AUTODETECT spr round 4 (radius: 20) [06:04:58 -3152.791606] AUTODETECT spr round 5 (radius: 25) [06:05:28 -3011.917845] SPR radius for FAST iterations: 25 (autodetect) [06:05:28 -3011.917845] Model parameter optimization (eps = 3.000000) [06:05:34 -2998.284479] FAST spr round 1 (radius: 25) [06:05:59 -2597.762227] FAST spr round 2 (radius: 25) [06:06:22 -2577.903405] FAST spr round 3 (radius: 25) [06:06:46 -2562.815911] FAST spr round 4 (radius: 25) [06:07:10 -2558.531936] FAST spr round 5 (radius: 25) [06:07:33 -2558.527943] Model parameter optimization (eps = 1.000000) [06:07:36 -2558.138946] SLOW spr round 1 (radius: 5) [06:08:01 -2528.739781] SLOW spr round 2 (radius: 5) [06:08:25 -2518.579943] SLOW spr round 3 (radius: 5) [06:08:50 -2513.958589] SLOW spr round 4 (radius: 5) [06:09:15 -2513.958588] SLOW spr round 5 (radius: 10) [06:09:41 -2512.638583] SLOW spr round 6 (radius: 5) [06:10:07 -2512.636275] SLOW spr round 7 (radius: 10) [06:10:33 -2511.732960] SLOW spr round 8 (radius: 5) [06:10:59 -2504.882716] SLOW spr round 9 (radius: 5) [06:11:24 -2501.583666] SLOW spr round 10 (radius: 5) [06:11:49 -2501.583655] SLOW spr round 11 (radius: 10) [06:12:16 -2501.583655] SLOW spr round 12 (radius: 15) [06:12:47 -2486.586525] SLOW spr round 13 (radius: 5) [06:13:16 -2478.196072] SLOW spr round 14 (radius: 5) [06:13:42 -2478.184793] SLOW spr round 15 (radius: 10) [06:14:09 -2478.184716] SLOW spr round 16 (radius: 15) [06:14:39 -2478.184679] SLOW spr round 17 (radius: 20) [06:15:17 -2476.989314] SLOW spr round 18 (radius: 5) [06:15:48 -2476.989288] SLOW spr round 19 (radius: 10) [06:16:16 -2464.613265] SLOW spr round 20 (radius: 5) [06:16:43 -2464.613257] SLOW spr round 21 (radius: 10) [06:17:10 -2464.613251] SLOW spr round 22 (radius: 15) [06:17:41 -2464.613247] SLOW spr round 23 (radius: 20) [06:18:18 -2464.613244] SLOW spr round 24 (radius: 25) [06:19:03 -2439.938642] SLOW spr round 25 (radius: 5) [06:19:33 -2407.836356] SLOW spr round 26 (radius: 5) [06:19:59 -2407.836298] SLOW spr round 27 (radius: 10) [06:20:26 -2407.836297] SLOW spr round 28 (radius: 15) [06:20:56 -2407.836297] SLOW spr round 29 (radius: 20) [06:21:31 -2406.711127] SLOW spr round 30 (radius: 5) [06:22:00 -2406.143013] SLOW spr round 31 (radius: 5) [06:22:26 -2406.143012] SLOW spr round 32 (radius: 10) [06:22:52 -2406.143012] SLOW spr round 33 (radius: 15) [06:23:21 -2406.143012] SLOW spr round 34 (radius: 20) [06:23:56 -2406.143012] SLOW spr round 35 (radius: 25) [06:24:37 -2406.073493] Model parameter optimization (eps = 0.100000) [06:24:43] ML tree search #15, logLikelihood: -2405.457443 [06:24:43 -11930.860005] Initial branch length optimization [06:24:43 -9379.857266] Model parameter optimization (eps = 10.000000) [06:24:55 -9168.542721] AUTODETECT spr round 1 (radius: 5) [06:25:17 -6391.665995] AUTODETECT spr round 2 (radius: 10) [06:25:43 -4482.957139] AUTODETECT spr round 3 (radius: 15) [06:26:09 -3799.629496] AUTODETECT spr round 4 (radius: 20) [06:26:45 -3308.034075] AUTODETECT spr round 5 (radius: 25) [06:27:15 -2972.971103] SPR radius for FAST iterations: 25 (autodetect) [06:27:15 -2972.971103] Model parameter optimization (eps = 3.000000) [06:27:22 -2961.566632] FAST spr round 1 (radius: 25) [06:27:47 -2589.855585] FAST spr round 2 (radius: 25) [06:28:11 -2561.930374] FAST spr round 3 (radius: 25) [06:28:36 -2561.760138] FAST spr round 4 (radius: 25) [06:28:59 -2561.759408] Model parameter optimization (eps = 1.000000) [06:29:03 -2561.389176] SLOW spr round 1 (radius: 5) [06:29:29 -2558.600913] SLOW spr round 2 (radius: 5) [06:29:54 -2558.600097] SLOW spr round 3 (radius: 10) [06:30:21 -2542.451599] SLOW spr round 4 (radius: 5) [06:30:48 -2538.093304] SLOW spr round 5 (radius: 5) [06:31:13 -2538.092618] SLOW spr round 6 (radius: 10) [06:31:39 -2537.980803] SLOW spr round 7 (radius: 5) [06:32:06 -2537.863240] SLOW spr round 8 (radius: 5) [06:32:31 -2537.863231] SLOW spr round 9 (radius: 10) [06:32:57 -2537.863228] SLOW spr round 10 (radius: 15) [06:33:27 -2526.244677] SLOW spr round 11 (radius: 5) [06:33:54 -2525.464731] SLOW spr round 12 (radius: 5) [06:34:19 -2525.464674] SLOW spr round 13 (radius: 10) [06:34:44 -2517.037892] SLOW spr round 14 (radius: 5) [06:35:09 -2517.037889] SLOW spr round 15 (radius: 10) [06:35:34 -2516.413372] SLOW spr round 16 (radius: 5) [06:35:59 -2516.413370] SLOW spr round 17 (radius: 10) [06:36:24 -2516.413367] SLOW spr round 18 (radius: 15) [06:36:52 -2515.503021] SLOW spr round 19 (radius: 5) [06:37:18 -2515.503018] SLOW spr round 20 (radius: 10) [06:37:43 -2515.093221] SLOW spr round 21 (radius: 5) [06:38:08 -2515.093218] SLOW spr round 22 (radius: 10) [06:38:33 -2515.093215] SLOW spr round 23 (radius: 15) [06:39:01 -2513.672713] SLOW spr round 24 (radius: 5) [06:39:27 -2513.672710] SLOW spr round 25 (radius: 10) [06:39:52 -2513.672707] SLOW spr round 26 (radius: 15) [06:40:21 -2513.672705] SLOW spr round 27 (radius: 20) [06:40:56 -2481.641274] SLOW spr round 28 (radius: 5) [06:41:23 -2477.165525] SLOW spr round 29 (radius: 5) [06:41:47 -2477.165265] SLOW spr round 30 (radius: 10) [06:42:12 -2477.058762] SLOW spr round 31 (radius: 5) [06:42:37 -2477.058682] SLOW spr round 32 (radius: 10) [06:43:02 -2477.058668] SLOW spr round 33 (radius: 15) [06:43:30 -2467.264319] SLOW spr round 34 (radius: 5) [06:43:56 -2466.341763] SLOW spr round 35 (radius: 5) [06:44:21 -2466.341741] SLOW spr round 36 (radius: 10) [06:44:45 -2466.341739] SLOW spr round 37 (radius: 15) [06:45:14 -2466.341736] SLOW spr round 38 (radius: 20) [06:45:47 -2460.602084] SLOW spr round 39 (radius: 5) [06:46:14 -2460.601713] SLOW spr round 40 (radius: 10) [06:46:39 -2460.601688] SLOW spr round 41 (radius: 15) [06:47:07 -2460.601681] SLOW spr round 42 (radius: 20) [06:47:41 -2460.601678] SLOW spr round 43 (radius: 25) [06:48:19 -2453.951366] SLOW spr round 44 (radius: 5) [06:48:47 -2441.865736] SLOW spr round 45 (radius: 5) [06:49:11 -2441.828540] SLOW spr round 46 (radius: 10) [06:49:36 -2441.815224] SLOW spr round 47 (radius: 15) [06:50:03 -2441.813317] SLOW spr round 48 (radius: 20) [06:50:36 -2439.864785] SLOW spr round 49 (radius: 5) [06:51:02 -2439.864686] SLOW spr round 50 (radius: 10) [06:51:27 -2439.864681] SLOW spr round 51 (radius: 15) [06:51:54 -2439.864679] SLOW spr round 52 (radius: 20) [06:52:26 -2439.864677] SLOW spr round 53 (radius: 25) [06:53:03 -2433.183442] SLOW spr round 54 (radius: 5) [06:53:30 -2432.157910] SLOW spr round 55 (radius: 5) [06:53:55 -2432.156752] SLOW spr round 56 (radius: 10) [06:54:20 -2432.156662] SLOW spr round 57 (radius: 15) [06:54:47 -2432.156593] SLOW spr round 58 (radius: 20) [06:55:20 -2432.156526] SLOW spr round 59 (radius: 25) [06:55:57 -2432.156070] Model parameter optimization (eps = 0.100000) [06:56:01] ML tree search #16, logLikelihood: -2432.072135 [06:56:01 -12106.459897] Initial branch length optimization [06:56:01 -9524.347087] Model parameter optimization (eps = 10.000000) [06:56:13 -9302.873253] AUTODETECT spr round 1 (radius: 5) [06:56:35 -6642.793007] AUTODETECT spr round 2 (radius: 10) [06:57:01 -4910.852617] AUTODETECT spr round 3 (radius: 15) [06:57:28 -4145.440973] AUTODETECT spr round 4 (radius: 20) [06:57:59 -3731.357132] AUTODETECT spr round 5 (radius: 25) [06:58:28 -3503.912533] SPR radius for FAST iterations: 25 (autodetect) [06:58:28 -3503.912533] Model parameter optimization (eps = 3.000000) [06:58:34 -3483.900039] FAST spr round 1 (radius: 25) [06:58:59 -2783.408792] FAST spr round 2 (radius: 25) [06:59:23 -2711.049889] FAST spr round 3 (radius: 25) [06:59:47 -2685.902410] FAST spr round 4 (radius: 25) [07:00:11 -2682.045268] FAST spr round 5 (radius: 25) [07:00:34 -2681.313944] FAST spr round 6 (radius: 25) [07:00:58 -2681.312772] Model parameter optimization (eps = 1.000000) [07:01:01 -2680.899997] SLOW spr round 1 (radius: 5) [07:01:26 -2680.271237] SLOW spr round 2 (radius: 5) [07:01:50 -2680.270276] SLOW spr round 3 (radius: 10) [07:02:16 -2678.490796] SLOW spr round 4 (radius: 5) [07:02:42 -2676.253475] SLOW spr round 5 (radius: 5) [07:03:08 -2674.806900] SLOW spr round 6 (radius: 5) [07:03:32 -2674.806824] SLOW spr round 7 (radius: 10) [07:03:57 -2674.806804] SLOW spr round 8 (radius: 15) [07:04:26 -2651.524090] SLOW spr round 9 (radius: 5) [07:04:54 -2647.661910] SLOW spr round 10 (radius: 5) [07:05:19 -2647.661758] SLOW spr round 11 (radius: 10) [07:05:44 -2647.661729] SLOW spr round 12 (radius: 15) [07:06:11 -2647.661718] SLOW spr round 13 (radius: 20) [07:06:44 -2623.807244] SLOW spr round 14 (radius: 5) [07:07:12 -2623.595497] SLOW spr round 15 (radius: 5) [07:07:38 -2623.359723] SLOW spr round 16 (radius: 5) [07:08:01 -2623.358677] SLOW spr round 17 (radius: 10) [07:08:26 -2614.880841] SLOW spr round 18 (radius: 5) [07:08:52 -2614.880801] SLOW spr round 19 (radius: 10) [07:09:17 -2614.880797] SLOW spr round 20 (radius: 15) [07:09:44 -2614.880797] SLOW spr round 21 (radius: 20) [07:10:15 -2614.396262] SLOW spr round 22 (radius: 5) [07:10:42 -2613.769745] SLOW spr round 23 (radius: 5) [07:11:07 -2613.769743] SLOW spr round 24 (radius: 10) [07:11:31 -2613.769743] SLOW spr round 25 (radius: 15) [07:11:59 -2613.344419] SLOW spr round 26 (radius: 5) [07:12:25 -2613.344405] SLOW spr round 27 (radius: 10) [07:12:50 -2613.262302] SLOW spr round 28 (radius: 15) [07:13:17 -2613.262301] SLOW spr round 29 (radius: 20) [07:13:48 -2611.051289] SLOW spr round 30 (radius: 5) [07:14:15 -2611.051289] SLOW spr round 31 (radius: 10) [07:14:41 -2611.051287] SLOW spr round 32 (radius: 15) [07:15:07 -2611.051287] SLOW spr round 33 (radius: 20) [07:15:39 -2611.051287] SLOW spr round 34 (radius: 25) [07:16:13 -2609.013507] SLOW spr round 35 (radius: 5) [07:16:40 -2609.013436] SLOW spr round 36 (radius: 10) [07:17:05 -2605.668023] SLOW spr round 37 (radius: 5) [07:17:31 -2605.668023] SLOW spr round 38 (radius: 10) [07:17:55 -2605.668023] SLOW spr round 39 (radius: 15) [07:18:22 -2605.668023] SLOW spr round 40 (radius: 20) [07:18:53 -2605.647903] SLOW spr round 41 (radius: 25) [07:19:28 -2594.450702] SLOW spr round 42 (radius: 5) [07:19:56 -2593.425263] SLOW spr round 43 (radius: 5) [07:20:21 -2590.101129] SLOW spr round 44 (radius: 5) [07:20:44 -2588.782360] SLOW spr round 45 (radius: 5) [07:21:08 -2578.789920] SLOW spr round 46 (radius: 5) [07:21:31 -2578.789920] SLOW spr round 47 (radius: 10) [07:21:56 -2578.789920] SLOW spr round 48 (radius: 15) [07:22:23 -2578.789920] SLOW spr round 49 (radius: 20) [07:22:53 -2578.789920] SLOW spr round 50 (radius: 25) [07:23:27 -2578.789919] Model parameter optimization (eps = 0.100000) [07:23:33] ML tree search #17, logLikelihood: -2578.240313 [07:23:33 -12045.134608] Initial branch length optimization [07:23:33 -9370.452258] Model parameter optimization (eps = 10.000000) [07:23:44 -9153.573342] AUTODETECT spr round 1 (radius: 5) [07:24:05 -6690.026036] AUTODETECT spr round 2 (radius: 10) [07:24:30 -4842.728783] AUTODETECT spr round 3 (radius: 15) [07:24:56 -3932.209439] AUTODETECT spr round 4 (radius: 20) [07:25:34 -3385.722460] AUTODETECT spr round 5 (radius: 25) [07:26:05 -3176.136932] SPR radius for FAST iterations: 25 (autodetect) [07:26:05 -3176.136932] Model parameter optimization (eps = 3.000000) [07:26:12 -3165.054204] FAST spr round 1 (radius: 25) [07:26:37 -2642.528206] FAST spr round 2 (radius: 25) [07:27:00 -2580.436153] FAST spr round 3 (radius: 25) [07:27:23 -2572.427005] FAST spr round 4 (radius: 25) [07:27:45 -2558.341427] FAST spr round 5 (radius: 25) [07:28:08 -2558.340916] Model parameter optimization (eps = 1.000000) [07:28:09 -2557.604002] SLOW spr round 1 (radius: 5) [07:28:34 -2501.433492] SLOW spr round 2 (radius: 5) [07:28:59 -2500.006649] SLOW spr round 3 (radius: 5) [07:29:24 -2500.005816] SLOW spr round 4 (radius: 10) [07:29:50 -2490.635283] SLOW spr round 5 (radius: 5) [07:30:16 -2490.075577] SLOW spr round 6 (radius: 5) [07:30:41 -2490.075567] SLOW spr round 7 (radius: 10) [07:31:07 -2490.075559] SLOW spr round 8 (radius: 15) [07:31:37 -2479.127306] SLOW spr round 9 (radius: 5) [07:32:06 -2475.016128] SLOW spr round 10 (radius: 5) [07:32:31 -2474.996509] SLOW spr round 11 (radius: 10) [07:32:57 -2474.996439] SLOW spr round 12 (radius: 15) [07:33:26 -2460.670971] SLOW spr round 13 (radius: 5) [07:33:54 -2458.963643] SLOW spr round 14 (radius: 5) [07:34:19 -2458.899413] SLOW spr round 15 (radius: 10) [07:34:45 -2458.702053] SLOW spr round 16 (radius: 5) [07:35:11 -2458.701924] SLOW spr round 17 (radius: 10) [07:35:36 -2458.701923] SLOW spr round 18 (radius: 15) [07:36:05 -2446.827385] SLOW spr round 19 (radius: 5) [07:36:33 -2446.827088] SLOW spr round 20 (radius: 10) [07:36:59 -2446.709692] SLOW spr round 21 (radius: 5) [07:37:25 -2446.709565] SLOW spr round 22 (radius: 10) [07:37:51 -2446.709469] SLOW spr round 23 (radius: 15) [07:38:20 -2446.424302] SLOW spr round 24 (radius: 5) [07:38:48 -2446.341797] SLOW spr round 25 (radius: 10) [07:39:15 -2446.341190] SLOW spr round 26 (radius: 15) [07:39:44 -2444.357085] SLOW spr round 27 (radius: 5) [07:40:13 -2444.244138] SLOW spr round 28 (radius: 5) [07:40:38 -2444.243956] SLOW spr round 29 (radius: 10) [07:41:04 -2444.243945] SLOW spr round 30 (radius: 15) [07:41:33 -2444.243945] SLOW spr round 31 (radius: 20) [07:42:11 -2434.811700] SLOW spr round 32 (radius: 5) [07:42:40 -2434.811199] SLOW spr round 33 (radius: 10) [07:43:06 -2434.811175] SLOW spr round 34 (radius: 15) [07:43:35 -2434.811173] SLOW spr round 35 (radius: 20) [07:44:12 -2434.578834] SLOW spr round 36 (radius: 5) [07:44:42 -2431.752283] SLOW spr round 37 (radius: 5) [07:45:08 -2431.025030] SLOW spr round 38 (radius: 5) [07:45:34 -2431.024970] SLOW spr round 39 (radius: 10) [07:46:00 -2429.954788] SLOW spr round 40 (radius: 5) [07:46:27 -2419.990315] SLOW spr round 41 (radius: 5) [07:46:51 -2419.990297] SLOW spr round 42 (radius: 10) [07:47:17 -2419.990296] SLOW spr round 43 (radius: 15) [07:47:46 -2419.990296] SLOW spr round 44 (radius: 20) [07:48:23 -2419.990296] SLOW spr round 45 (radius: 25) [07:49:05 -2405.855516] SLOW spr round 46 (radius: 5) [07:49:34 -2396.716769] SLOW spr round 47 (radius: 5) [07:49:59 -2396.716749] SLOW spr round 48 (radius: 10) [07:50:25 -2396.716735] SLOW spr round 49 (radius: 15) [07:50:53 -2396.716721] SLOW spr round 50 (radius: 20) [07:51:29 -2357.632865] SLOW spr round 51 (radius: 5) [07:51:56 -2357.517465] SLOW spr round 52 (radius: 5) [07:52:21 -2357.516910] SLOW spr round 53 (radius: 10) [07:52:45 -2357.516891] SLOW spr round 54 (radius: 15) [07:53:13 -2357.516890] SLOW spr round 55 (radius: 20) [07:53:48 -2357.516890] SLOW spr round 56 (radius: 25) [07:54:28 -2357.516890] Model parameter optimization (eps = 0.100000) [07:54:35] ML tree search #18, logLikelihood: -2356.791621 [07:54:35 -12034.421041] Initial branch length optimization [07:54:35 -9540.541702] Model parameter optimization (eps = 10.000000) [07:54:47 -9325.987131] AUTODETECT spr round 1 (radius: 5) [07:55:08 -6789.575459] AUTODETECT spr round 2 (radius: 10) [07:55:34 -4683.209507] AUTODETECT spr round 3 (radius: 15) [07:56:01 -3685.541160] AUTODETECT spr round 4 (radius: 20) [07:56:36 -3246.268078] AUTODETECT spr round 5 (radius: 25) [07:57:05 -3100.773510] SPR radius for FAST iterations: 25 (autodetect) [07:57:05 -3100.773510] Model parameter optimization (eps = 3.000000) [07:57:13 -3062.883432] FAST spr round 1 (radius: 25) [07:57:39 -2590.650200] FAST spr round 2 (radius: 25) [07:58:03 -2569.813136] FAST spr round 3 (radius: 25) [07:58:26 -2569.302726] FAST spr round 4 (radius: 25) [07:58:49 -2569.300850] Model parameter optimization (eps = 1.000000) [07:58:57 -2567.009470] SLOW spr round 1 (radius: 5) [07:59:22 -2567.001589] SLOW spr round 2 (radius: 10) [07:59:48 -2560.766246] SLOW spr round 3 (radius: 5) [08:00:15 -2555.144082] SLOW spr round 4 (radius: 5) [08:00:41 -2553.381493] SLOW spr round 5 (radius: 5) [08:01:06 -2553.079220] SLOW spr round 6 (radius: 5) [08:01:31 -2553.078963] SLOW spr round 7 (radius: 10) [08:01:57 -2552.105026] SLOW spr round 8 (radius: 5) [08:02:23 -2552.105012] SLOW spr round 9 (radius: 10) [08:02:49 -2550.224179] SLOW spr round 10 (radius: 5) [08:03:16 -2550.224172] SLOW spr round 11 (radius: 10) [08:03:42 -2550.224165] SLOW spr round 12 (radius: 15) [08:04:10 -2542.807134] SLOW spr round 13 (radius: 5) [08:04:39 -2542.636991] SLOW spr round 14 (radius: 5) [08:05:05 -2542.610608] SLOW spr round 15 (radius: 10) [08:05:31 -2542.610601] SLOW spr round 16 (radius: 15) [08:05:59 -2542.610595] SLOW spr round 17 (radius: 20) [08:06:33 -2523.756980] SLOW spr round 18 (radius: 5) [08:07:00 -2521.356323] SLOW spr round 19 (radius: 5) [08:07:25 -2521.356305] SLOW spr round 20 (radius: 10) [08:07:50 -2521.356299] SLOW spr round 21 (radius: 15) [08:08:17 -2518.495680] SLOW spr round 22 (radius: 5) [08:08:45 -2518.495664] SLOW spr round 23 (radius: 10) [08:09:10 -2518.387621] SLOW spr round 24 (radius: 5) [08:09:35 -2518.387615] SLOW spr round 25 (radius: 10) [08:10:00 -2518.387609] SLOW spr round 26 (radius: 15) [08:10:27 -2518.387603] SLOW spr round 27 (radius: 20) [08:10:59 -2516.091149] SLOW spr round 28 (radius: 5) [08:11:27 -2515.217525] SLOW spr round 29 (radius: 5) [08:11:52 -2515.217518] SLOW spr round 30 (radius: 10) [08:12:17 -2515.217512] SLOW spr round 31 (radius: 15) [08:12:44 -2515.217507] SLOW spr round 32 (radius: 20) [08:13:17 -2515.217501] SLOW spr round 33 (radius: 25) [08:13:55 -2509.424835] SLOW spr round 34 (radius: 5) [08:14:25 -2495.820635] SLOW spr round 35 (radius: 5) [08:14:51 -2495.820630] SLOW spr round 36 (radius: 10) [08:15:16 -2495.820624] SLOW spr round 37 (radius: 15) [08:15:45 -2495.820619] SLOW spr round 38 (radius: 20) [08:16:20 -2495.820613] SLOW spr round 39 (radius: 25) [08:17:00 -2495.522422] SLOW spr round 40 (radius: 5) [08:17:29 -2495.522417] SLOW spr round 41 (radius: 10) [08:17:56 -2495.410003] SLOW spr round 42 (radius: 5) [08:18:21 -2495.409996] SLOW spr round 43 (radius: 10) [08:18:47 -2495.409991] SLOW spr round 44 (radius: 15) [08:19:15 -2495.409986] SLOW spr round 45 (radius: 20) [08:19:50 -2495.409981] SLOW spr round 46 (radius: 25) [08:20:30 -2495.409976] Model parameter optimization (eps = 0.100000) [08:20:35] ML tree search #19, logLikelihood: -2494.673814 [08:20:35 -12013.524754] Initial branch length optimization [08:20:36 -9440.017454] Model parameter optimization (eps = 10.000000) [08:20:47 -9245.149802] AUTODETECT spr round 1 (radius: 5) [08:21:08 -6555.184762] AUTODETECT spr round 2 (radius: 10) [08:21:34 -4780.400583] AUTODETECT spr round 3 (radius: 15) [08:22:02 -3917.330115] AUTODETECT spr round 4 (radius: 20) [08:22:43 -3461.694225] AUTODETECT spr round 5 (radius: 25) [08:23:13 -3219.238536] SPR radius for FAST iterations: 25 (autodetect) [08:23:13 -3219.238536] Model parameter optimization (eps = 3.000000) [08:23:21 -3207.557476] FAST spr round 1 (radius: 25) [08:23:46 -2778.990381] FAST spr round 2 (radius: 25) [08:24:10 -2732.351257] FAST spr round 3 (radius: 25) [08:24:34 -2730.082931] FAST spr round 4 (radius: 25) [08:24:58 -2730.081597] Model parameter optimization (eps = 1.000000) [08:25:01 -2729.943733] SLOW spr round 1 (radius: 5) [08:25:27 -2701.596165] SLOW spr round 2 (radius: 5) [08:25:53 -2701.595489] SLOW spr round 3 (radius: 10) [08:26:19 -2701.116359] SLOW spr round 4 (radius: 5) [08:26:47 -2700.484237] SLOW spr round 5 (radius: 5) [08:27:12 -2700.484196] SLOW spr round 6 (radius: 10) [08:27:39 -2700.484168] SLOW spr round 7 (radius: 15) [08:28:08 -2673.307344] SLOW spr round 8 (radius: 5) [08:28:37 -2656.168361] SLOW spr round 9 (radius: 5) [08:29:03 -2655.972394] SLOW spr round 10 (radius: 5) [08:29:28 -2655.972344] SLOW spr round 11 (radius: 10) [08:29:53 -2647.967957] SLOW spr round 12 (radius: 5) [08:30:19 -2647.967880] SLOW spr round 13 (radius: 10) [08:30:45 -2647.967879] SLOW spr round 14 (radius: 15) [08:31:13 -2647.740033] SLOW spr round 15 (radius: 5) [08:31:40 -2647.740032] SLOW spr round 16 (radius: 10) [08:32:06 -2647.439643] SLOW spr round 17 (radius: 5) [08:32:32 -2647.439642] SLOW spr round 18 (radius: 10) [08:32:58 -2647.439642] SLOW spr round 19 (radius: 15) [08:33:26 -2642.543438] SLOW spr round 20 (radius: 5) [08:33:54 -2641.761514] SLOW spr round 21 (radius: 5) [08:34:19 -2641.759817] SLOW spr round 22 (radius: 10) [08:34:45 -2641.758358] SLOW spr round 23 (radius: 15) [08:35:12 -2641.758291] SLOW spr round 24 (radius: 20) [08:35:46 -2631.341679] SLOW spr round 25 (radius: 5) [08:36:14 -2631.060926] SLOW spr round 26 (radius: 5) [08:36:40 -2629.274423] SLOW spr round 27 (radius: 5) [08:37:05 -2629.274420] SLOW spr round 28 (radius: 10) [08:37:31 -2629.274419] SLOW spr round 29 (radius: 15) [08:38:00 -2619.804362] SLOW spr round 30 (radius: 5) [08:38:28 -2617.346269] SLOW spr round 31 (radius: 5) [08:38:54 -2616.948986] SLOW spr round 32 (radius: 5) [08:39:19 -2616.948986] SLOW spr round 33 (radius: 10) [08:39:44 -2616.598334] SLOW spr round 34 (radius: 5) [08:40:11 -2616.598163] SLOW spr round 35 (radius: 10) [08:40:37 -2616.598025] SLOW spr round 36 (radius: 15) [08:41:05 -2616.597899] SLOW spr round 37 (radius: 20) [08:41:38 -2615.042169] SLOW spr round 38 (radius: 5) [08:42:06 -2615.042071] SLOW spr round 39 (radius: 10) [08:42:33 -2615.042057] SLOW spr round 40 (radius: 15) [08:43:01 -2615.042055] SLOW spr round 41 (radius: 20) [08:43:33 -2615.042055] SLOW spr round 42 (radius: 25) [08:44:08 -2610.903122] SLOW spr round 43 (radius: 5) [08:44:37 -2609.014748] SLOW spr round 44 (radius: 5) [08:45:03 -2609.013597] SLOW spr round 45 (radius: 10) [08:45:28 -2609.013553] SLOW spr round 46 (radius: 15) [08:45:55 -2608.878242] SLOW spr round 47 (radius: 5) [08:46:23 -2608.878242] SLOW spr round 48 (radius: 10) [08:46:49 -2608.878242] SLOW spr round 49 (radius: 15) [08:47:16 -2606.889421] SLOW spr round 50 (radius: 5) [08:47:44 -2606.665096] SLOW spr round 51 (radius: 5) [08:48:09 -2606.664438] SLOW spr round 52 (radius: 10) [08:48:34 -2606.664387] SLOW spr round 53 (radius: 15) [08:49:02 -2598.922992] SLOW spr round 54 (radius: 5) [08:49:29 -2583.677561] SLOW spr round 55 (radius: 5) [08:49:55 -2583.677560] SLOW spr round 56 (radius: 10) [08:50:19 -2583.677560] SLOW spr round 57 (radius: 15) [08:50:47 -2583.677560] SLOW spr round 58 (radius: 20) [08:51:17 -2583.677560] SLOW spr round 59 (radius: 25) [08:51:53 -2583.677560] Model parameter optimization (eps = 0.100000) [08:51:57] ML tree search #20, logLikelihood: -2582.946563 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.416700,0.050183) (0.083332,0.149407) (0.249963,0.967807) (0.250005,2.898832) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -2340.765518 AIC score: 7359.531036 / AICc score: 3595879.531036 / BIC score: 8008.821040 Free parameters (model + branch lengths): 1339 WARNING: Number of free parameters (K=1339) is larger than alignment size (n=12). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 446 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EQ8/3_mltree/Q96EQ8.raxml.bestTreeCollapsed Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EQ8/3_mltree/Q96EQ8.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EQ8/3_mltree/Q96EQ8.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EQ8/3_mltree/Q96EQ8.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96EQ8/3_mltree/Q96EQ8.raxml.log Analysis started: 08-Jul-2021 09:14:52 / finished: 08-Jul-2021 18:06:50 Elapsed time: 31917.615 seconds