RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 16-Jul-2021 02:23:23 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96B26/2_msa/Q96B26_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96B26/3_mltree/Q96B26 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96B26/2_msa/Q96B26_trimmed_msa.fasta
[00:00:00] Loaded alignment with 844 taxa and 243 sites

WARNING: Sequences tr_M3XRW5_M3XRW5_MUSPF_9669 and tr_M3W110_M3W110_FELCA_9685 are exactly identical!
WARNING: Sequences tr_D8S327_D8S327_SELML_88036 and tr_D8S862_D8S862_SELML_88036 are exactly identical!
WARNING: Sequences tr_A0A2J8MLI8_A0A2J8MLI8_PANTR_9598 and tr_A0A2R8ZU31_A0A2R8ZU31_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A088A8Y2_A0A088A8Y2_APIME_7460 and tr_A0A2A3E680_A0A2A3E680_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A0E0HC16_A0A0E0HC16_ORYNI_4536 and tr_B8BK82_B8BK82_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_A0A0E0HC16_A0A0E0HC16_ORYNI_4536 and tr_A0A0E0R7F5_A0A0E0R7F5_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0HC16_A0A0E0HC16_ORYNI_4536 and tr_A0A0E0BIC8_A0A0E0BIC8_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0E0HC16_A0A0E0HC16_ORYNI_4536 and tr_B7ELW5_B7ELW5_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_F4NTM1_F4NTM1_BATDJ_684364 and tr_A0A177WBZ5_A0A177WBZ5_BATDE_403673 are exactly identical!
WARNING: Sequences tr_I1QZK1_I1QZK1_ORYGL_4538 and tr_A0A0D3HL04_A0A0D3HL04_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_I1R5S7_I1R5S7_ORYGL_4538 and tr_A0A0E0RG97_A0A0E0RG97_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_I1R5S7_I1R5S7_ORYGL_4538 and tr_A0A0D3HTJ8_A0A0D3HTJ8_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_I1R5S7_I1R5S7_ORYGL_4538 and tr_Q2QT85_Q2QT85_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_G2XW45_G2XW45_BOTF4_999810 and tr_M7UAQ6_M7UAQ6_BOTF1_1290391 are exactly identical!
WARNING: Sequences tr_A0A0D2XHJ4_A0A0D2XHJ4_FUSO4_426428 and tr_N4TPK2_N4TPK2_FUSC1_1229664 are exactly identical!
WARNING: Sequences tr_A0A0D2XHJ4_A0A0D2XHJ4_FUSO4_426428 and tr_X0D5W1_X0D5W1_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_L0PB17_L0PB17_PNEJ8_1209962 and tr_A0A0W4ZUJ5_A0A0W4ZUJ5_PNEJ7_1408657 are exactly identical!
WARNING: Sequences tr_M0WAX5_M0WAX5_HORVV_112509 and tr_A0A3B6NNJ6_A0A3B6NNJ6_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_S0E535_S0E535_GIBF5_1279085 and tr_A0A365NF95_A0A365NF95_GIBIN_948311 are exactly identical!
WARNING: Sequences tr_U5H9G1_U5H9G1_USTV1_683840 and tr_A0A2X0MD27_A0A2X0MD27_9BASI_796604 are exactly identical!
WARNING: Sequences tr_V2YT56_V2YT56_MONRO_1381753 and tr_A0A0W0GA21_A0A0W0GA21_9AGAR_221103 are exactly identical!
WARNING: Sequences tr_W2PFE5_W2PFE5_PHYPN_761204 and tr_A0A0W8C7V0_A0A0W8C7V0_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_W2PFE5_W2PFE5_PHYPN_761204 and tr_W2K117_W2K117_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A3B6INW8_A0A3B6INW8_WHEAT_4565 and tr_A0A3B6JEL0_A0A3B6JEL0_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_A0A015JGQ2_A0A015JGQ2_9GLOM_1432141 and tr_A0A2I1GD83_A0A2I1GD83_9GLOM_588596 are exactly identical!
WARNING: Sequences tr_A0A015JGQ2_A0A015JGQ2_9GLOM_1432141 and tr_A0A2H5S9D8_A0A2H5S9D8_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A044USE3_A0A044USE3_ONCVO_6282 and tr_A0A182E7Z1_A0A182E7Z1_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A2K6VSJ9_A0A2K6VSJ9_ONCVO_6282 and tr_A0A182ECN0_A0A182ECN0_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A067DQC7_A0A067DQC7_CITSI_2711 and tr_V4U5Z9_V4U5Z9_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A096MWY6_A0A096MWY6_PAPAN_9555 and tr_A0A0D9RZ48_A0A0D9RZ48_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A096MWY6_A0A096MWY6_PAPAN_9555 and tr_A0A2K5NCM6_A0A2K5NCM6_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A096MWY6_A0A096MWY6_PAPAN_9555 and tr_A0A2K6C310_A0A2K6C310_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A078G6N6_A0A078G6N6_BRANA_3708 and tr_A0A0D3AF40_A0A0D3AF40_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A078J3E8_A0A078J3E8_BRANA_3708 and tr_A0A0D3E5D6_A0A0D3E5D6_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_V4UA38_V4UA38_9ROSI_85681 and tr_A0A2H5PL70_A0A2H5PL70_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A0A1NL96_A0A0A1NL96_9FUNG_58291 and tr_A0A367K1Z7_A0A367K1Z7_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0A1NRP6_A0A0A1NRP6_9FUNG_58291 and tr_A0A367J6E7_A0A367J6E7_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0V1DIR3_A0A0V1DIR3_TRIBR_45882 and tr_A0A0V0UW30_A0A0V0UW30_9BILA_181606 are exactly identical!
WARNING: Sequences tr_A0A0V1DIR3_A0A0V1DIR3_TRIBR_45882 and tr_A0A0V1PPF7_A0A0V1PPF7_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V1DIR3_A0A0V1DIR3_TRIBR_45882 and tr_A0A0V0TZA6_A0A0V0TZA6_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A0V0WI44_A0A0V0WI44_9BILA_92179 and tr_A0A0V1LV98_A0A0V1LV98_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A1S4ATI6_A0A1S4ATI6_TOBAC_4097 and tr_A0A1U7X1J7_A0A1U7X1J7_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S4CCS2_A0A1S4CCS2_TOBAC_4097 and tr_A0A1U7WZF9_A0A1U7WZF9_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3VQU4_A0A1S3VQU4_VIGRR_3916 and tr_A0A1S3VRS2_A0A1S3VRS2_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A1S3VQU4_A0A1S3VQU4_VIGRR_3916 and tr_A0A3Q0FG91_A0A3Q0FG91_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A1S3VQU4_A0A1S3VQU4_VIGRR_3916 and tr_A0A3Q0FH64_A0A3Q0FH64_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A1U8H2E9_A0A1U8H2E9_CAPAN_4072 and tr_A0A2G3CAY1_A0A2G3CAY1_CAPCH_80379 are exactly identical!
WARNING: Duplicate sequences found: 47

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96B26/3_mltree/Q96B26.raxml.reduced.phy

Alignment comprises 1 partitions and 243 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 243 / 243
Gaps: 4.38 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96B26/3_mltree/Q96B26.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 844 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 243 / 19440
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -421311.597630] Initial branch length optimization
[00:00:06 -353855.958378] Model parameter optimization (eps = 10.000000)
[00:01:30 -352034.454091] AUTODETECT spr round 1 (radius: 5)
[00:04:17 -261364.034819] AUTODETECT spr round 2 (radius: 10)
[00:07:25 -206887.541327] AUTODETECT spr round 3 (radius: 15)
[00:10:41 -178969.796668] AUTODETECT spr round 4 (radius: 20)
[00:14:22 -159908.438472] AUTODETECT spr round 5 (radius: 25)
[00:18:53 -152639.084915] SPR radius for FAST iterations: 25 (autodetect)
[00:18:53 -152639.084915] Model parameter optimization (eps = 3.000000)
[00:19:16 -152479.491880] FAST spr round 1 (radius: 25)
[00:23:21 -135976.841624] FAST spr round 2 (radius: 25)
[00:26:18 -135153.881385] FAST spr round 3 (radius: 25)
[00:28:51 -135083.308303] FAST spr round 4 (radius: 25)
[00:31:00 -135075.516375] FAST spr round 5 (radius: 25)
[00:32:58 -135075.516064] Model parameter optimization (eps = 1.000000)
[00:33:12 -135071.270523] SLOW spr round 1 (radius: 5)
[00:36:02 -135034.208155] SLOW spr round 2 (radius: 5)
[00:38:55 -135020.634953] SLOW spr round 3 (radius: 5)
[00:41:33 -135019.706291] SLOW spr round 4 (radius: 5)
[00:44:08 -135019.706278] SLOW spr round 5 (radius: 10)
[00:46:44 -135016.983725] SLOW spr round 6 (radius: 5)
[00:49:57 -135016.983681] SLOW spr round 7 (radius: 10)
[00:52:54 -135016.055358] SLOW spr round 8 (radius: 5)
[00:56:03 -135015.289900] SLOW spr round 9 (radius: 5)
[00:58:51 -135015.289853] SLOW spr round 10 (radius: 10)
[01:01:31 -135015.289852] SLOW spr round 11 (radius: 15)
[01:05:44 -135015.289852] SLOW spr round 12 (radius: 20)
[01:11:20 -135015.289851] SLOW spr round 13 (radius: 25)
[01:14:48] [worker #2] ML tree search #3, logLikelihood: -135037.966058
[01:18:32 -135015.289851] Model parameter optimization (eps = 0.100000)

[01:18:38] [worker #0] ML tree search #1, logLikelihood: -135015.243301

[01:18:39 -420533.185915] Initial branch length optimization
[01:18:45 -352246.683698] Model parameter optimization (eps = 10.000000)
[01:19:36 -350733.997118] AUTODETECT spr round 1 (radius: 5)
[01:22:25 -262281.094827] AUTODETECT spr round 2 (radius: 10)
[01:23:22] [worker #3] ML tree search #4, logLikelihood: -135025.086447
[01:23:45] [worker #4] ML tree search #5, logLikelihood: -135026.456274
[01:25:31 -209452.758458] AUTODETECT spr round 3 (radius: 15)
[01:28:44] [worker #1] ML tree search #2, logLikelihood: -135032.366760
[01:28:59 -172723.847404] AUTODETECT spr round 4 (radius: 20)
[01:32:51 -157673.008065] AUTODETECT spr round 5 (radius: 25)
[01:36:40 -152605.961033] SPR radius for FAST iterations: 25 (autodetect)
[01:36:40 -152605.961033] Model parameter optimization (eps = 3.000000)
[01:37:12 -152330.685855] FAST spr round 1 (radius: 25)
[01:41:03 -136189.515347] FAST spr round 2 (radius: 25)
[01:44:00 -135206.899136] FAST spr round 3 (radius: 25)
[01:46:25 -135119.393187] FAST spr round 4 (radius: 25)
[01:48:38 -135103.744227] FAST spr round 5 (radius: 25)
[01:50:39 -135094.758857] FAST spr round 6 (radius: 25)
[01:52:34 -135093.346862] FAST spr round 7 (radius: 25)
[01:54:27 -135093.346861] Model parameter optimization (eps = 1.000000)
[01:54:44 -135089.990773] SLOW spr round 1 (radius: 5)
[01:57:35 -135051.097208] SLOW spr round 2 (radius: 5)
[02:00:15 -135049.970715] SLOW spr round 3 (radius: 5)
[02:02:50 -135049.794437] SLOW spr round 4 (radius: 5)
[02:05:23 -135049.793547] SLOW spr round 5 (radius: 10)
[02:08:02 -135046.176628] SLOW spr round 6 (radius: 5)
[02:11:16 -135045.216890] SLOW spr round 7 (radius: 5)
[02:14:07 -135045.216792] SLOW spr round 8 (radius: 10)
[02:16:54 -135044.011894] SLOW spr round 9 (radius: 5)
[02:20:07 -135041.150831] SLOW spr round 10 (radius: 5)
[02:22:55 -135041.150416] SLOW spr round 11 (radius: 10)
[02:25:41 -135040.905401] SLOW spr round 12 (radius: 5)
[02:28:50 -135040.902811] SLOW spr round 13 (radius: 10)
[02:31:50 -135040.902649] SLOW spr round 14 (radius: 15)
[02:33:56] [worker #2] ML tree search #8, logLikelihood: -135060.789420
[02:36:01 -135040.902641] SLOW spr round 15 (radius: 20)
[02:38:57] [worker #1] ML tree search #7, logLikelihood: -135028.603284
[02:41:59 -135040.902640] SLOW spr round 16 (radius: 25)
[02:49:46 -135040.902639] Model parameter optimization (eps = 0.100000)

[02:49:52] [worker #0] ML tree search #6, logLikelihood: -135040.887962

[02:49:52 -421656.684961] Initial branch length optimization
[02:49:59 -352899.286983] Model parameter optimization (eps = 10.000000)
[02:51:26 -351203.197788] AUTODETECT spr round 1 (radius: 5)
[02:54:12 -267433.472847] AUTODETECT spr round 2 (radius: 10)
[02:57:13 -208671.581505] AUTODETECT spr round 3 (radius: 15)
[02:59:02] [worker #3] ML tree search #9, logLikelihood: -135028.190016
[03:00:33 -174492.950328] AUTODETECT spr round 4 (radius: 20)
[03:04:18 -156492.529262] AUTODETECT spr round 5 (radius: 25)
[03:08:20 -154653.473794] SPR radius for FAST iterations: 25 (autodetect)
[03:08:20 -154653.473794] Model parameter optimization (eps = 3.000000)
[03:08:42 -154500.233758] FAST spr round 1 (radius: 25)
[03:11:46] [worker #4] ML tree search #10, logLikelihood: -135044.556488
[03:12:37 -136080.667784] FAST spr round 2 (radius: 25)
[03:15:31 -135175.409931] FAST spr round 3 (radius: 25)
[03:17:56 -135095.970957] FAST spr round 4 (radius: 25)
[03:20:03 -135086.334490] FAST spr round 5 (radius: 25)
[03:22:02 -135084.658118] FAST spr round 6 (radius: 25)
[03:23:58 -135084.657938] Model parameter optimization (eps = 1.000000)
[03:24:10 -135081.413404] SLOW spr round 1 (radius: 5)
[03:27:00 -135045.719822] SLOW spr round 2 (radius: 5)
[03:29:45 -135037.775138] SLOW spr round 3 (radius: 5)
[03:32:23 -135031.929354] SLOW spr round 4 (radius: 5)
[03:34:57 -135031.929347] SLOW spr round 5 (radius: 10)
[03:37:41 -135031.096641] SLOW spr round 6 (radius: 5)
[03:40:55 -135030.734343] SLOW spr round 7 (radius: 5)
[03:43:45 -135030.734161] SLOW spr round 8 (radius: 10)
[03:46:36 -135030.066157] SLOW spr round 9 (radius: 5)
[03:49:47 -135029.120029] SLOW spr round 10 (radius: 5)
[03:52:37 -135029.119778] SLOW spr round 11 (radius: 10)
[03:55:26 -135029.119775] SLOW spr round 12 (radius: 15)
[03:56:57] [worker #1] ML tree search #12, logLikelihood: -135036.786508
[03:59:46 -135029.119774] SLOW spr round 13 (radius: 20)
[04:05:47 -135029.119774] SLOW spr round 14 (radius: 25)
[04:13:29 -135029.119773] Model parameter optimization (eps = 0.100000)

[04:13:39] [worker #0] ML tree search #11, logLikelihood: -135029.003931

[04:13:39 -423297.718592] Initial branch length optimization
[04:13:46 -354681.258869] Model parameter optimization (eps = 10.000000)
[04:14:53 -352984.964001] AUTODETECT spr round 1 (radius: 5)
[04:15:51] [worker #3] ML tree search #14, logLikelihood: -135026.255165
[04:17:38] [worker #2] ML tree search #13, logLikelihood: -135027.921996
[04:17:39 -260818.250012] AUTODETECT spr round 2 (radius: 10)
[04:20:45 -198011.729499] AUTODETECT spr round 3 (radius: 15)
[04:23:58 -176432.968337] AUTODETECT spr round 4 (radius: 20)
[04:27:44 -161400.399667] AUTODETECT spr round 5 (radius: 25)
[04:30:23] [worker #4] ML tree search #15, logLikelihood: -135035.989219
[04:32:03 -156954.027195] SPR radius for FAST iterations: 25 (autodetect)
[04:32:03 -156954.027195] Model parameter optimization (eps = 3.000000)
[04:32:33 -156753.401539] FAST spr round 1 (radius: 25)
[04:36:24 -135995.252675] FAST spr round 2 (radius: 25)
[04:39:20 -135144.000553] FAST spr round 3 (radius: 25)
[04:41:46 -135112.691251] FAST spr round 4 (radius: 25)
[04:44:00 -135094.551206] FAST spr round 5 (radius: 25)
[04:45:59 -135093.548369] FAST spr round 6 (radius: 25)
[04:47:53 -135093.546890] Model parameter optimization (eps = 1.000000)
[04:48:14 -135089.824425] SLOW spr round 1 (radius: 5)
[04:51:12 -135052.379082] SLOW spr round 2 (radius: 5)
[04:53:56 -135050.644332] SLOW spr round 3 (radius: 5)
[04:56:34 -135048.077831] SLOW spr round 4 (radius: 5)
[04:59:07 -135048.077267] SLOW spr round 5 (radius: 10)
[05:01:48 -135045.792902] SLOW spr round 6 (radius: 5)
[05:05:04 -135044.508667] SLOW spr round 7 (radius: 5)
[05:07:55 -135044.212317] SLOW spr round 8 (radius: 5)
[05:09:34] [worker #1] ML tree search #17, logLikelihood: -135009.834668
[05:10:35 -135044.212078] SLOW spr round 9 (radius: 10)
[05:13:18 -135042.883125] SLOW spr round 10 (radius: 5)
[05:16:29 -135042.700364] SLOW spr round 11 (radius: 5)
[05:19:18 -135042.700332] SLOW spr round 12 (radius: 10)
[05:22:05 -135042.412220] SLOW spr round 13 (radius: 5)
[05:25:14 -135042.411815] SLOW spr round 14 (radius: 10)
[05:28:14 -135042.411801] SLOW spr round 15 (radius: 15)
[05:32:14 -135042.411799] SLOW spr round 16 (radius: 20)
[05:34:13] [worker #2] ML tree search #18, logLikelihood: -135017.766723
[05:38:08 -135042.411798] SLOW spr round 17 (radius: 25)
[05:44:52] [worker #3] ML tree search #19, logLikelihood: -135045.881890
[05:45:31 -135042.411798] Model parameter optimization (eps = 0.100000)

[05:45:42] [worker #0] ML tree search #16, logLikelihood: -135042.180646

[05:53:38] [worker #4] ML tree search #20, logLikelihood: -135038.587545

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.182972,0.640426) (0.297457,0.609273) (0.325236,0.994742) (0.194335,1.945409) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -135009.834668

AIC score: 273401.669335 / AICc score: 5995745.669335 / BIC score: 279308.436236
Free parameters (model + branch lengths): 1691

WARNING: Number of free parameters (K=1691) is larger than alignment size (n=243).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 70 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96B26/3_mltree/Q96B26.raxml.bestTreeCollapsed
Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96B26/3_mltree/Q96B26.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96B26/3_mltree/Q96B26.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96B26/3_mltree/Q96B26.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q96B26/3_mltree/Q96B26.raxml.log

Analysis started: 16-Jul-2021 02:23:23 / finished: 16-Jul-2021 08:17:03

Elapsed time: 21219.113 seconds