RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 05-Jul-2021 22:36:38 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96AG3/2_msa/Q96AG3_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96AG3/3_mltree/Q96AG3 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96AG3/2_msa/Q96AG3_trimmed_msa.fasta
[00:00:00] Loaded alignment with 245 taxa and 339 sites

WARNING: Sequences tr_G3RWU0_G3RWU0_GORGO_9595 and tr_H2QRA8_H2QRA8_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RWU0_G3RWU0_GORGO_9595 and sp_Q96AG3_S2546_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RWU0_G3RWU0_GORGO_9595 and tr_A0A096MMM2_A0A096MMM2_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3RWU0_G3RWU0_GORGO_9595 and tr_A0A0D9RR60_A0A0D9RR60_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G3RWU0_G3RWU0_GORGO_9595 and tr_A0A2K5KKP2_A0A2K5KKP2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G3RWU0_G3RWU0_GORGO_9595 and tr_A0A2K6D208_A0A2K6D208_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G3RWU0_G3RWU0_GORGO_9595 and tr_A0A2K5Y3R6_A0A2K5Y3R6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G3RWU0_G3RWU0_GORGO_9595 and tr_A0A2R9CDF5_A0A2R9CDF5_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A158N9I2_A0A158N9I2_ATTCE_12957 and tr_A0A151HYQ5_A0A151HYQ5_9HYME_520822 are exactly identical!
WARNING: Sequences tr_B3RSD8_B3RSD8_TRIAD_10228 and tr_A0A369SHE1_A0A369SHE1_9METZ_287889 are exactly identical!
WARNING: Sequences tr_A0A0V1CM88_A0A0V1CM88_TRIBR_45882 and tr_A0A0V0WGX4_A0A0V0WGX4_9BILA_92179 are exactly identical!
WARNING: Sequences tr_A0A0V1CM88_A0A0V1CM88_TRIBR_45882 and tr_A0A0V1LMQ9_A0A0V1LMQ9_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A0V0V1T1_A0A0V0V1T1_9BILA_181606 and tr_A0A0V1NUM4_A0A0V1NUM4_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V0V1T1_A0A0V0V1T1_9BILA_181606 and tr_A0A0V0TZL4_A0A0V0TZL4_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A1I7TCG3_A0A1I7TCG3_9PELO_1561998 and tr_A0A1I7TCG4_A0A1I7TCG4_9PELO_1561998 are exactly identical!
WARNING: Sequences tr_A0A1J1J6D2_A0A1J1J6D2_9DIPT_568069 and tr_A0A1J1J949_A0A1J1J949_9DIPT_568069 are exactly identical!
WARNING: Sequences tr_A0A2D0RQM4_A0A2D0RQM4_ICTPU_7998 and tr_W5U9U3_W5U9U3_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2Y9PV14_A0A2Y9PV14_DELLE_9749 and tr_A0A2Y9FA03_A0A2Y9FA03_PHYCD_9755 are exactly identical!
WARNING: Duplicate sequences found: 18

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96AG3/3_mltree/Q96AG3.raxml.reduced.phy

Alignment comprises 1 partitions and 339 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 339 / 339
Gaps: 9.27 %
Invariant sites: 0.88 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96AG3/3_mltree/Q96AG3.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 245 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 339 / 27120
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -134693.711266] Initial branch length optimization
[00:00:01 -100852.012482] Model parameter optimization (eps = 10.000000)
[00:00:18 -100520.689014] AUTODETECT spr round 1 (radius: 5)
[00:00:36 -77650.210590] AUTODETECT spr round 2 (radius: 10)
[00:01:03 -59795.977678] AUTODETECT spr round 3 (radius: 15)
[00:01:38 -49513.797631] AUTODETECT spr round 4 (radius: 20)
[00:02:21 -48891.124499] AUTODETECT spr round 5 (radius: 25)
[00:02:57 -48891.122092] SPR radius for FAST iterations: 20 (autodetect)
[00:02:57 -48891.122092] Model parameter optimization (eps = 3.000000)
[00:03:12 -48703.996692] FAST spr round 1 (radius: 20)
[00:03:35 -41860.584642] FAST spr round 2 (radius: 20)
[00:03:57 -41659.770336] FAST spr round 3 (radius: 20)
[00:04:13 -41647.847440] FAST spr round 4 (radius: 20)
[00:04:28 -41645.585079] FAST spr round 5 (radius: 20)
[00:04:41 -41645.585005] Model parameter optimization (eps = 1.000000)
[00:04:48 -41635.932833] SLOW spr round 1 (radius: 5)
[00:05:18 -41628.877453] SLOW spr round 2 (radius: 5)
[00:05:45 -41628.877302] SLOW spr round 3 (radius: 10)
[00:06:14 -41628.877296] SLOW spr round 4 (radius: 15)
[00:07:05 -41628.877296] SLOW spr round 5 (radius: 20)
[00:08:01 -41628.877295] SLOW spr round 6 (radius: 25)
[00:08:57 -41628.877295] Model parameter optimization (eps = 0.100000)

[00:08:59] [worker #0] ML tree search #1, logLikelihood: -41628.845387

[00:08:59 -131187.465856] Initial branch length optimization
[00:09:00 -99608.143046] Model parameter optimization (eps = 10.000000)
[00:09:15 -99296.636597] AUTODETECT spr round 1 (radius: 5)
[00:09:35 -74899.975079] AUTODETECT spr round 2 (radius: 10)
[00:10:00 -56765.106306] AUTODETECT spr round 3 (radius: 15)
[00:10:23] [worker #4] ML tree search #5, logLikelihood: -41632.391670
[00:10:31 -49609.260886] AUTODETECT spr round 4 (radius: 20)
[00:11:13 -46847.180750] AUTODETECT spr round 5 (radius: 25)
[00:11:36] [worker #1] ML tree search #2, logLikelihood: -41629.194622
[00:11:38] [worker #3] ML tree search #4, logLikelihood: -41631.174178
[00:11:50 -46837.693895] SPR radius for FAST iterations: 25 (autodetect)
[00:11:50 -46837.693895] Model parameter optimization (eps = 3.000000)
[00:12:05 -46702.693444] FAST spr round 1 (radius: 25)
[00:12:24] [worker #2] ML tree search #3, logLikelihood: -41625.572503
[00:12:32 -41874.834992] FAST spr round 2 (radius: 25)
[00:12:53 -41662.008268] FAST spr round 3 (radius: 25)
[00:13:09 -41651.310080] FAST spr round 4 (radius: 25)
[00:13:22 -41651.310080] Model parameter optimization (eps = 1.000000)
[00:13:28 -41644.239234] SLOW spr round 1 (radius: 5)
[00:13:59 -41640.845179] SLOW spr round 2 (radius: 5)
[00:14:26 -41640.844028] SLOW spr round 3 (radius: 10)
[00:14:54 -41640.843997] SLOW spr round 4 (radius: 15)
[00:15:43 -41640.843995] SLOW spr round 5 (radius: 20)
[00:16:42 -41640.843995] SLOW spr round 6 (radius: 25)
[00:17:36 -41640.843995] Model parameter optimization (eps = 0.100000)

[00:17:38] [worker #0] ML tree search #6, logLikelihood: -41640.821448

[00:17:38 -134822.007859] Initial branch length optimization
[00:17:39 -101437.822211] Model parameter optimization (eps = 10.000000)
[00:17:56 -101124.085837] AUTODETECT spr round 1 (radius: 5)
[00:18:14 -76352.462541] AUTODETECT spr round 2 (radius: 10)
[00:18:37 -61836.213993] AUTODETECT spr round 3 (radius: 15)
[00:19:06 -49209.380604] AUTODETECT spr round 4 (radius: 20)
[00:19:38 -47659.130418] AUTODETECT spr round 5 (radius: 25)
[00:20:09 -47629.050783] SPR radius for FAST iterations: 25 (autodetect)
[00:20:10 -47629.050783] Model parameter optimization (eps = 3.000000)
[00:20:22 -47452.658045] FAST spr round 1 (radius: 25)
[00:20:44 -41867.978841] FAST spr round 2 (radius: 25)
[00:21:07 -41675.289147] FAST spr round 3 (radius: 25)
[00:21:24 -41654.649588] FAST spr round 4 (radius: 25)
[00:21:34] [worker #4] ML tree search #10, logLikelihood: -41630.648540
[00:21:38 -41654.649560] Model parameter optimization (eps = 1.000000)
[00:21:45 -41645.712557] SLOW spr round 1 (radius: 5)
[00:22:16 -41633.865535] SLOW spr round 2 (radius: 5)
[00:22:45 -41631.921788] SLOW spr round 3 (radius: 5)
[00:23:07] [worker #1] ML tree search #7, logLikelihood: -41630.010726
[00:23:12 -41631.015228] SLOW spr round 4 (radius: 5)
[00:23:16] [worker #3] ML tree search #9, logLikelihood: -41628.189315
[00:23:35] [worker #2] ML tree search #8, logLikelihood: -41631.061062
[00:23:38 -41631.015030] SLOW spr round 5 (radius: 10)
[00:24:06 -41631.015023] SLOW spr round 6 (radius: 15)
[00:24:55 -41631.015022] SLOW spr round 7 (radius: 20)
[00:25:53 -41631.015022] SLOW spr round 8 (radius: 25)
[00:26:49 -41631.015022] Model parameter optimization (eps = 0.100000)

[00:26:52] [worker #0] ML tree search #11, logLikelihood: -41630.996312

[00:26:52 -133903.979823] Initial branch length optimization
[00:26:52 -100039.098033] Model parameter optimization (eps = 10.000000)
[00:27:13 -99739.448597] AUTODETECT spr round 1 (radius: 5)
[00:27:30 -78033.673546] AUTODETECT spr round 2 (radius: 10)
[00:27:56 -57332.283059] AUTODETECT spr round 3 (radius: 15)
[00:28:28 -48140.027480] AUTODETECT spr round 4 (radius: 20)
[00:29:10 -47217.434885] AUTODETECT spr round 5 (radius: 25)
[00:29:53] [worker #4] ML tree search #15, logLikelihood: -41630.434739
[00:29:56 -47062.736977] SPR radius for FAST iterations: 25 (autodetect)
[00:29:56 -47062.736977] Model parameter optimization (eps = 3.000000)
[00:30:10 -46864.964394] FAST spr round 1 (radius: 25)
[00:30:37 -41769.906014] FAST spr round 2 (radius: 25)
[00:30:59 -41662.656820] FAST spr round 3 (radius: 25)
[00:31:15 -41651.518671] FAST spr round 4 (radius: 25)
[00:31:28 -41648.604659] FAST spr round 5 (radius: 25)
[00:31:30] [worker #1] ML tree search #12, logLikelihood: -41628.722223
[00:31:42 -41648.604429] Model parameter optimization (eps = 1.000000)
[00:31:48 -41644.135562] SLOW spr round 1 (radius: 5)
[00:32:21 -41630.150494] SLOW spr round 2 (radius: 5)
[00:32:48 -41630.150170] SLOW spr round 3 (radius: 10)
[00:33:09] [worker #2] ML tree search #13, logLikelihood: -41639.098936
[00:33:17 -41630.150152] SLOW spr round 4 (radius: 15)
[00:34:08 -41627.066210] SLOW spr round 5 (radius: 5)
[00:34:48 -41627.051758] SLOW spr round 6 (radius: 10)
[00:35:25 -41627.048785] SLOW spr round 7 (radius: 15)
[00:36:11 -41627.048167] SLOW spr round 8 (radius: 20)
[00:37:09 -41627.048038] SLOW spr round 9 (radius: 25)
[00:37:38] [worker #3] ML tree search #14, logLikelihood: -41626.922866
[00:38:03 -41627.048011] Model parameter optimization (eps = 0.100000)

[00:38:06] [worker #0] ML tree search #16, logLikelihood: -41626.912969

[00:38:13] [worker #4] ML tree search #20, logLikelihood: -41628.417455
[00:41:28] [worker #2] ML tree search #18, logLikelihood: -41637.578879
[00:42:54] [worker #1] ML tree search #17, logLikelihood: -41631.273026
[00:46:39] [worker #3] ML tree search #19, logLikelihood: -41633.445867

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.244389,0.487674) (0.292387,0.861397) (0.382436,1.102743) (0.080788,2.565093) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -41625.572503

AIC score: 84237.145006 / AICc score: 571321.145006 / BIC score: 86123.363059
Free parameters (model + branch lengths): 493

WARNING: Number of free parameters (K=493) is larger than alignment size (n=339).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96AG3/3_mltree/Q96AG3.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96AG3/3_mltree/Q96AG3.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96AG3/3_mltree/Q96AG3.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96AG3/3_mltree/Q96AG3.raxml.log

Analysis started: 05-Jul-2021 22:36:38 / finished: 05-Jul-2021 23:23:18

Elapsed time: 2799.507 seconds

Consumed energy: 178.667 Wh