RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 01-Jul-2021 11:18:46 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96A99/2_msa/Q96A99_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96A99/3_mltree/Q96A99 --seed 2 --threads 3 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96A99/2_msa/Q96A99_trimmed_msa.fasta [00:00:00] Loaded alignment with 941 taxa and 142 sites WARNING: Sequences tr_E1C7S1_E1C7S1_CHICK_9031 and tr_G1MS71_G1MS71_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C7S1_E1C7S1_CHICK_9031 and tr_U3KHS0_U3KHS0_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1C7S1_E1C7S1_CHICK_9031 and tr_U3IFK6_U3IFK6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1C7S1_E1C7S1_CHICK_9031 and tr_A0A091FBB7_A0A091FBB7_CORBR_85066 are exactly identical! WARNING: Sequences tr_E1C7S1_E1C7S1_CHICK_9031 and tr_A0A093QK52_A0A093QK52_9PASS_328815 are exactly identical! WARNING: Sequences tr_E1C7S1_E1C7S1_CHICK_9031 and tr_A0A091WDU7_A0A091WDU7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1C7S1_E1C7S1_CHICK_9031 and tr_A0A0A0A0P5_A0A0A0A0P5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1C7S1_E1C7S1_CHICK_9031 and tr_A0A091I8K6_A0A091I8K6_CALAN_9244 are exactly identical! WARNING: Sequences sp_O70340_NPTX2_MOUSE_10090 and tr_M3YYP6_M3YYP6_MUSPF_9669 are exactly identical! WARNING: Sequences sp_O70340_NPTX2_MOUSE_10090 and tr_G3HY92_G3HY92_CRIGR_10029 are exactly identical! WARNING: Sequences sp_O70340_NPTX2_MOUSE_10090 and tr_F1PJV6_F1PJV6_CANLF_9615 are exactly identical! WARNING: Sequences sp_O70340_NPTX2_MOUSE_10090 and sp_P97738_NPTX2_RAT_10116 are exactly identical! WARNING: Sequences sp_O70340_NPTX2_MOUSE_10090 and tr_G1LK16_G1LK16_AILME_9646 are exactly identical! WARNING: Sequences sp_O70340_NPTX2_MOUSE_10090 and tr_A0A1U7QJ12_A0A1U7QJ12_MESAU_10036 are exactly identical! WARNING: Sequences sp_O70340_NPTX2_MOUSE_10090 and tr_A0A2U3VHE7_A0A2U3VHE7_ODORO_9708 are exactly identical! WARNING: Sequences sp_O70340_NPTX2_MOUSE_10090 and tr_A0A2U3YUW4_A0A2U3YUW4_LEPWE_9713 are exactly identical! WARNING: Sequences sp_O70340_NPTX2_MOUSE_10090 and tr_A0A2Y9J7X8_A0A2Y9J7X8_ENHLU_391180 are exactly identical! WARNING: Sequences sp_O70340_NPTX2_MOUSE_10090 and tr_A0A384CPF3_A0A384CPF3_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q62443_NPTX1_MOUSE_10090 and tr_G3GX52_G3GX52_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q62443_NPTX1_MOUSE_10090 and sp_P47971_NPTX1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q62443_NPTX1_MOUSE_10090 and tr_I3N3W3_I3N3W3_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q62443_NPTX1_MOUSE_10090 and tr_A0A337SAJ1_A0A337SAJ1_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q62443_NPTX1_MOUSE_10090 and tr_A0A091DZ52_A0A091DZ52_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q62443_NPTX1_MOUSE_10090 and tr_A0A1U7QD68_A0A1U7QD68_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2I3GDY8_A0A2I3GDY8_NOMLE_61853 and tr_G3SD80_G3SD80_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GDY8_A0A2I3GDY8_NOMLE_61853 and tr_H2P4E6_H2P4E6_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GDY8_A0A2I3GDY8_NOMLE_61853 and tr_H2QLP3_H2QLP3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GDY8_A0A2I3GDY8_NOMLE_61853 and sp_O95502_NPTXR_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RID4_G1RID4_NOMLE_61853 and tr_H2QUZ8_H2QUZ8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RID4_G1RID4_NOMLE_61853 and sp_P47972_NPTX2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RID4_G1RID4_NOMLE_61853 and tr_F7H281_F7H281_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RID4_G1RID4_NOMLE_61853 and tr_G7P096_G7P096_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RID4_G1RID4_NOMLE_61853 and tr_A0A0D9RYU2_A0A0D9RYU2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RID4_G1RID4_NOMLE_61853 and tr_A0A2K5MHQ3_A0A2K5MHQ3_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RID4_G1RID4_NOMLE_61853 and tr_A0A2K5YZ88_A0A2K5YZ88_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RID4_G1RID4_NOMLE_61853 and tr_A0A2R9AWU3_A0A2R9AWU3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and tr_G3R2M6_G3R2M6_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and tr_H2NUZ8_H2NUZ8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and tr_H2QE15_H2QE15_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and sp_Q15818_NPTX1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and tr_F7BPE4_F7BPE4_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and tr_G3UKU8_G3UKU8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and tr_U3FBQ1_U3FBQ1_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and tr_G7PT36_G7PT36_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and tr_A0A096NTC4_A0A096NTC4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and tr_A0A2K5P3A9_A0A2K5P3A9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and tr_A0A2K6DE03_A0A2K6DE03_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and tr_A0A2K6A6U0_A0A2K6A6U0_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1S0T0_G1S0T0_NOMLE_61853 and tr_A0A2R8ZH12_A0A2R8ZH12_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RH48_G3RH48_GORGO_9595 and sp_P26022_PTX3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RNE5_G3RNE5_GORGO_9595 and tr_H2PT08_H2PT08_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RNE5_G3RNE5_GORGO_9595 and tr_H2R6G0_H2R6G0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RNE5_G3RNE5_GORGO_9595 and sp_Q4LDE5_SVEP1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RNE5_G3RNE5_GORGO_9595 and tr_A0A2R9ABC8_A0A2R9ABC8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1N2Z0_G1N2Z0_MELGA_9103 and tr_A0A226PMX6_A0A226PMX6_COLVI_9014 are exactly identical! WARNING: Sequences tr_G1T4G4_G1T4G4_RABIT_9986 and tr_H0XLI0_H0XLI0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1T4G4_G1T4G4_RABIT_9986 and tr_A0A0D9S4D9_A0A0D9S4D9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_E2R478_E2R478_CANLF_9615 and tr_A0A2U3XR71_A0A2U3XR71_LEPWE_9713 are exactly identical! WARNING: Sequences tr_H2QNM9_H2QNM9_PANTR_9598 and tr_A0A2R9BA25_A0A2R9BA25_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2RHT5_H2RHT5_PANTR_9598 and tr_A0A2R8ZCR0_A0A2R8ZCR0_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7BVD5_F7BVD5_MONDO_13616 and tr_G3WXE7_G3WXE7_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7EZT8_F7EZT8_MONDO_13616 and tr_G3VXC2_G3VXC2_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7BAQ3_F7BAQ3_HORSE_9796 and tr_A0A2Y9PP68_A0A2Y9PP68_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A3B5R5U4_A0A3B5R5U4_XIPMA_8083 and tr_A0A087XH29_A0A087XH29_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5R9E5_A0A3B5R9E5_XIPMA_8083 and tr_H2TE97_H2TE97_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B5R9E5_A0A3B5R9E5_XIPMA_8083 and tr_A0A087XYE6_A0A087XYE6_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4ACU0_M4ACU0_XIPMA_8083 and tr_A0A087XJ60_A0A087XJ60_POEFO_48698 are exactly identical! WARNING: Sequences tr_I3JF55_I3JF55_ORENI_8128 and tr_I3JF60_I3JF60_ORENI_8128 are exactly identical! WARNING: Sequences tr_I3K522_I3K522_ORENI_8128 and tr_I3K523_I3K523_ORENI_8128 are exactly identical! WARNING: Sequences tr_I3KTM4_I3KTM4_ORENI_8128 and tr_G3PJ69_G3PJ69_GASAC_69293 are exactly identical! WARNING: Sequences tr_I3KTM4_I3KTM4_ORENI_8128 and tr_A0A2U9CQ40_A0A2U9CQ40_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A287D5Y5_A0A287D5Y5_ICTTR_43179 and tr_M3W238_M3W238_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A287D5Y5_A0A287D5Y5_ICTTR_43179 and tr_A0A1U7UYU9_A0A1U7UYU9_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H0WA30_H0WA30_CAVPO_10141 and sp_P47970_NPTX2_CAVPO_10141 are exactly identical! WARNING: Sequences tr_F7AP45_F7AP45_MACMU_9544 and tr_G7PFK2_G7PFK2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7AP45_F7AP45_MACMU_9544 and tr_A0A096NK41_A0A096NK41_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7AP45_F7AP45_MACMU_9544 and tr_A0A2K5NES9_A0A2K5NES9_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7AP45_F7AP45_MACMU_9544 and tr_A0A2K6BGN8_A0A2K6BGN8_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7C773_F7C773_MACMU_9544 and tr_A0A2K6CF61_A0A2K6CF61_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7D9P8_F7D9P8_MACMU_9544 and tr_A0A096P0X0_A0A096P0X0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7D9P8_F7D9P8_MACMU_9544 and tr_A0A0D9RH89_A0A0D9RH89_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7D9P8_F7D9P8_MACMU_9544 and tr_A0A2K5M5G3_A0A2K5M5G3_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7D9P8_F7D9P8_MACMU_9544 and tr_A0A2K6BKX3_A0A2K6BKX3_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7D9P8_F7D9P8_MACMU_9544 and tr_A0A2K6AB04_A0A2K6AB04_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1B8YA20_A0A1B8YA20_XENTR_8364 and tr_B1H3E3_B1H3E3_XENTR_8364 are exactly identical! WARNING: Sequences tr_F7BR18_F7BR18_XENTR_8364 and tr_Q8QHL8_Q8QHL8_XENLA_8355 are exactly identical! WARNING: Sequences tr_F1RJ76_F1RJ76_PIG_9823 and sp_O19062_CRP_PIG_9823 are exactly identical! WARNING: Sequences tr_G1LWA7_G1LWA7_AILME_9646 and tr_A0A384DA84_A0A384DA84_URSMA_29073 are exactly identical! WARNING: Sequences tr_E1BIM6_E1BIM6_BOVIN_9913 and tr_A0A1S3ANL8_A0A1S3ANL8_ERIEU_9365 are exactly identical! WARNING: Sequences tr_E1BIM6_E1BIM6_BOVIN_9913 and tr_A0A2Y9T7I9_A0A2Y9T7I9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_E1BIM6_E1BIM6_BOVIN_9913 and tr_A0A384AFB6_A0A384AFB6_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3MYU9_G3MYU9_BOVIN_9913 and tr_A0A2U4AZ41_A0A2U4AZ41_TURTR_9739 are exactly identical! WARNING: Sequences tr_G3MYU9_G3MYU9_BOVIN_9913 and tr_A0A2Y9P8U7_A0A2Y9P8U7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A096NQN2_A0A096NQN2_PAPAN_9555 and tr_A0A0D9S3Z9_A0A0D9S3Z9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096NQN2_A0A096NQN2_PAPAN_9555 and tr_A0A2K5LKI3_A0A2K5LKI3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NQN2_A0A096NQN2_PAPAN_9555 and tr_A0A2K5ZRI7_A0A2K5ZRI7_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3MFU7_A0A2I3MFU7_PAPAN_9555 and tr_A0A2K5NK29_A0A2K5NK29_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3MQ49_A0A2I3MQ49_PAPAN_9555 and tr_A0A0D9RI29_A0A0D9RI29_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3MQ49_A0A2I3MQ49_PAPAN_9555 and tr_A0A2K5N7V0_A0A2K5N7V0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3MQ49_A0A2I3MQ49_PAPAN_9555 and tr_A0A2K6BXT7_A0A2K6BXT7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A151MYX4_A0A151MYX4_ALLMI_8496 and tr_A0A3Q0H924_A0A3Q0H924_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151P5W4_A0A151P5W4_ALLMI_8496 and tr_A0A3Q0FZ36_A0A3Q0FZ36_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A093H0Q4_A0A093H0Q4_STRCA_441894 and tr_A0A099ZQB5_A0A099ZQB5_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A2I0LNG2_A0A2I0LNG2_COLLI_8932 and tr_A0A1V4KWT9_A0A1V4KWT9_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3L7J4_A0A1S3L7J4_SALSA_8030 and tr_A0A060WXA1_A0A060WXA1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PXE5_A0A1S3PXE5_SALSA_8030 and tr_A0A060WPC5_A0A060WPC5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3R9P5_A0A1S3R9P5_SALSA_8030 and tr_A0A1S3S3Q4_A0A1S3S3Q4_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3RCV3_A0A1S3RCV3_SALSA_8030 and tr_A0A1S3S263_A0A1S3S263_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3RCV3_A0A1S3RCV3_SALSA_8030 and tr_A0A060XZS6_A0A060XZS6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3SDU1_A0A1S3SDU1_SALSA_8030 and tr_A0A060WR24_A0A060WR24_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MLI8_A0A226MLI8_CALSU_9009 and tr_A0A226PSP9_A0A226PSP9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226N009_A0A226N009_CALSU_9009 and tr_A0A226PC86_A0A226PC86_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NHS2_A0A226NHS2_CALSU_9009 and tr_A0A226P9L7_A0A226P9L7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0S0I8_A0A2D0S0I8_ICTPU_7998 and tr_A0A2D0S0K9_A0A2D0S0K9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S946_A0A2D0S946_ICTPU_7998 and tr_A0A2D0S951_A0A2D0S951_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S946_A0A2D0S946_ICTPU_7998 and tr_A0A2D0SAK5_A0A2D0SAK5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SH05_A0A2D0SH05_ICTPU_7998 and tr_A0A2D0SI91_A0A2D0SI91_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4C8W6_A0A2U4C8W6_TURTR_9739 and tr_A0A2Y9NJ57_A0A2Y9NJ57_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3VPJ4_A0A2U3VPJ4_ODORO_9708 and tr_A0A2Y9JAW2_A0A2Y9JAW2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2Y9NIJ2_A0A2Y9NIJ2_DELLE_9749 and tr_A0A2Y9STU9_A0A2Y9STU9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9NIJ2_A0A2Y9NIJ2_DELLE_9749 and tr_A0A383ZTG0_A0A383ZTG0_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 121 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96A99/3_mltree/Q96A99.raxml.reduced.phy Alignment comprises 1 partitions and 142 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 142 / 142 Gaps: 4.40 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96A99/3_mltree/Q96A99.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 941 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 142 / 11360 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -236257.585846] Initial branch length optimization [00:00:02 -192476.761124] Model parameter optimization (eps = 10.000000) [00:00:31 -190903.260979] AUTODETECT spr round 1 (radius: 5) [00:02:27 -139402.786162] AUTODETECT spr round 2 (radius: 10) [00:04:34 -104869.047417] AUTODETECT spr round 3 (radius: 15) [00:06:42 -87371.916690] AUTODETECT spr round 4 (radius: 20) [00:09:13 -79259.009266] AUTODETECT spr round 5 (radius: 25) [00:12:26 -76936.904258] SPR radius for FAST iterations: 25 (autodetect) [00:12:26 -76936.904258] Model parameter optimization (eps = 3.000000) [00:12:45 -76849.516578] FAST spr round 1 (radius: 25) [00:15:10 -65217.108028] FAST spr round 2 (radius: 25) [00:17:05 -64700.762905] FAST spr round 3 (radius: 25) [00:18:46 -64648.686365] FAST spr round 4 (radius: 25) [00:20:12 -64645.186750] FAST spr round 5 (radius: 25) [00:21:34 -64644.211296] FAST spr round 6 (radius: 25) [00:22:55 -64644.211267] Model parameter optimization (eps = 1.000000) [00:23:11 -64633.618106] SLOW spr round 1 (radius: 5) [00:24:56 -64613.524762] SLOW spr round 2 (radius: 5) [00:26:40 -64612.622109] SLOW spr round 3 (radius: 5) [00:28:18 -64612.622037] SLOW spr round 4 (radius: 10) [00:30:01 -64612.380658] SLOW spr round 5 (radius: 5) [00:32:05 -64612.380570] SLOW spr round 6 (radius: 10) [00:33:59 -64612.247737] SLOW spr round 7 (radius: 5) [00:35:59 -64612.247733] SLOW spr round 8 (radius: 10) [00:37:51 -64612.247730] SLOW spr round 9 (radius: 15) [00:40:37 -64611.820422] SLOW spr round 10 (radius: 5) [00:42:46 -64611.820420] SLOW spr round 11 (radius: 10) [00:44:45 -64611.820419] SLOW spr round 12 (radius: 15) [00:47:26 -64611.820419] SLOW spr round 13 (radius: 20) [00:47:42] [worker #1] ML tree search #2, logLikelihood: -64622.640356 [00:52:01 -64611.820418] SLOW spr round 14 (radius: 25) [00:57:40 -64611.523554] SLOW spr round 15 (radius: 5) [00:59:53 -64611.523554] SLOW spr round 16 (radius: 10) [01:01:59 -64611.523550] SLOW spr round 17 (radius: 15) [01:04:41 -64611.523550] SLOW spr round 18 (radius: 20) [01:09:18 -64611.523550] SLOW spr round 19 (radius: 25) [01:14:58 -64611.523550] Model parameter optimization (eps = 0.100000) [01:15:04] [worker #0] ML tree search #1, logLikelihood: -64611.511352 [01:15:04 -236787.255313] Initial branch length optimization [01:15:07 -192809.329909] Model parameter optimization (eps = 10.000000) [01:15:40 -191257.597743] AUTODETECT spr round 1 (radius: 5) [01:17:37 -139709.783025] AUTODETECT spr round 2 (radius: 10) [01:19:41 -107268.309554] AUTODETECT spr round 3 (radius: 15) [01:20:41] [worker #2] ML tree search #3, logLikelihood: -64636.650482 [01:21:51 -93352.756360] AUTODETECT spr round 4 (radius: 20) [01:24:22 -86408.982086] AUTODETECT spr round 5 (radius: 25) [01:27:13 -79415.171348] SPR radius for FAST iterations: 25 (autodetect) [01:27:13 -79415.171348] Model parameter optimization (eps = 3.000000) [01:27:30 -79328.737972] FAST spr round 1 (radius: 25) [01:29:58 -65827.250309] FAST spr round 2 (radius: 25) [01:31:51 -64790.781250] FAST spr round 3 (radius: 25) [01:33:26 -64674.325169] FAST spr round 4 (radius: 25) [01:34:53 -64664.025484] FAST spr round 5 (radius: 25) [01:36:15 -64664.024993] Model parameter optimization (eps = 1.000000) [01:36:28 -64662.779864] SLOW spr round 1 (radius: 5) [01:38:16 -64651.436397] SLOW spr round 2 (radius: 5) [01:40:00 -64644.655467] SLOW spr round 3 (radius: 5) [01:41:45 -64644.654389] SLOW spr round 4 (radius: 10) [01:43:32 -64642.458712] SLOW spr round 5 (radius: 5) [01:45:39 -64642.305416] SLOW spr round 6 (radius: 5) [01:47:31 -64642.305402] SLOW spr round 7 (radius: 10) [01:49:20 -64642.305394] SLOW spr round 8 (radius: 15) [01:52:07 -64642.305386] SLOW spr round 9 (radius: 20) [01:56:34 -64642.068135] SLOW spr round 10 (radius: 5) [01:57:10] [worker #1] ML tree search #5, logLikelihood: -64613.055491 [01:58:47 -64641.174936] SLOW spr round 11 (radius: 5) [02:00:43 -64641.174930] SLOW spr round 12 (radius: 10) [02:02:34 -64641.174924] SLOW spr round 13 (radius: 15) [02:05:20 -64640.245319] SLOW spr round 14 (radius: 5) [02:07:31 -64640.245185] SLOW spr round 15 (radius: 10) [02:09:33 -64640.245174] SLOW spr round 16 (radius: 15) [02:12:14 -64640.245172] SLOW spr round 17 (radius: 20) [02:16:43 -64640.245170] SLOW spr round 18 (radius: 25) [02:22:11 -64640.245168] Model parameter optimization (eps = 0.100000) [02:22:19] [worker #0] ML tree search #4, logLikelihood: -64639.206050 [02:22:19 -239060.182899] Initial branch length optimization [02:22:21 -193845.212180] Model parameter optimization (eps = 10.000000) [02:23:02 -192130.712858] AUTODETECT spr round 1 (radius: 5) [02:24:57 -140733.974648] AUTODETECT spr round 2 (radius: 10) [02:27:05 -107782.658323] AUTODETECT spr round 3 (radius: 15) [02:28:54] [worker #2] ML tree search #6, logLikelihood: -64630.481888 [02:29:18 -94210.219137] AUTODETECT spr round 4 (radius: 20) [02:32:06 -80193.724302] AUTODETECT spr round 5 (radius: 25) [02:35:05 -74177.235702] SPR radius for FAST iterations: 25 (autodetect) [02:35:05 -74177.235702] Model parameter optimization (eps = 3.000000) [02:35:25 -74073.606078] FAST spr round 1 (radius: 25) [02:37:56 -65186.859940] FAST spr round 2 (radius: 25) [02:39:49 -64714.383543] FAST spr round 3 (radius: 25) [02:41:31 -64662.776136] FAST spr round 4 (radius: 25) [02:43:00 -64657.071182] FAST spr round 5 (radius: 25) [02:44:23 -64657.070208] Model parameter optimization (eps = 1.000000) [02:44:38 -64654.300665] SLOW spr round 1 (radius: 5) [02:46:31 -64638.103629] SLOW spr round 2 (radius: 5) [02:48:23 -64631.354427] SLOW spr round 3 (radius: 5) [02:50:12 -64631.326455] SLOW spr round 4 (radius: 10) [02:51:59 -64630.337810] SLOW spr round 5 (radius: 5) [02:54:08 -64629.622570] SLOW spr round 6 (radius: 5) [02:56:06 -64629.622240] SLOW spr round 7 (radius: 10) [02:58:01 -64628.382038] SLOW spr round 8 (radius: 5) [03:00:06 -64628.381285] SLOW spr round 9 (radius: 10) [03:00:52] [worker #1] ML tree search #8, logLikelihood: -64618.198314 [03:02:02 -64628.381265] SLOW spr round 10 (radius: 15) [03:04:42 -64628.381265] SLOW spr round 11 (radius: 20) [03:09:00 -64628.095178] SLOW spr round 12 (radius: 5) [03:11:24 -64623.397744] SLOW spr round 13 (radius: 5) [03:13:24 -64623.396437] SLOW spr round 14 (radius: 10) [03:15:16 -64623.396316] SLOW spr round 15 (radius: 15) [03:17:59 -64623.396302] SLOW spr round 16 (radius: 20) [03:22:13 -64622.197824] SLOW spr round 17 (radius: 5) [03:24:31 -64619.983272] SLOW spr round 18 (radius: 5) [03:26:32 -64619.982419] SLOW spr round 19 (radius: 10) [03:28:29 -64619.982374] SLOW spr round 20 (radius: 15) [03:31:11 -64619.982363] SLOW spr round 21 (radius: 20) [03:32:36] [worker #2] ML tree search #9, logLikelihood: -64618.551983 [03:35:22 -64619.982359] SLOW spr round 22 (radius: 25) [03:40:27 -64619.982357] Model parameter optimization (eps = 0.100000) [03:40:33] [worker #0] ML tree search #7, logLikelihood: -64619.911450 [03:40:33 -238208.644849] Initial branch length optimization [03:40:35 -194410.501038] Model parameter optimization (eps = 10.000000) [03:41:14 -192830.522564] AUTODETECT spr round 1 (radius: 5) [03:43:12 -140198.986308] AUTODETECT spr round 2 (radius: 10) [03:45:17 -109316.310646] AUTODETECT spr round 3 (radius: 15) [03:47:33 -91642.147878] AUTODETECT spr round 4 (radius: 20) [03:50:18 -78818.001622] AUTODETECT spr round 5 (radius: 25) [03:53:12 -76248.829798] SPR radius for FAST iterations: 25 (autodetect) [03:53:12 -76248.829798] Model parameter optimization (eps = 3.000000) [03:53:32 -76169.626375] FAST spr round 1 (radius: 25) [03:55:57 -65581.331129] FAST spr round 2 (radius: 25) [03:57:46 -64791.186549] FAST spr round 3 (radius: 25) [03:59:29 -64679.564414] FAST spr round 4 (radius: 25) [04:01:01 -64653.751053] FAST spr round 5 (radius: 25) [04:02:26 -64651.069855] FAST spr round 6 (radius: 25) [04:03:51 -64643.774358] FAST spr round 7 (radius: 25) [04:05:13 -64643.772737] Model parameter optimization (eps = 1.000000) [04:05:21 -64642.689681] SLOW spr round 1 (radius: 5) [04:07:11 -64624.039425] SLOW spr round 2 (radius: 5) [04:08:58 -64622.104867] SLOW spr round 3 (radius: 5) [04:10:43 -64622.104651] SLOW spr round 4 (radius: 10) [04:12:29 -64621.966741] SLOW spr round 5 (radius: 5) [04:14:35 -64621.966650] SLOW spr round 6 (radius: 10) [04:16:32 -64621.481793] SLOW spr round 7 (radius: 5) [04:17:03] [worker #1] ML tree search #11, logLikelihood: -64642.274824 [04:18:35 -64621.481619] SLOW spr round 8 (radius: 10) [04:20:30 -64621.481599] SLOW spr round 9 (radius: 15) [04:23:16 -64621.481589] SLOW spr round 10 (radius: 20) [04:27:36 -64620.047960] SLOW spr round 11 (radius: 5) [04:29:52 -64613.688517] SLOW spr round 12 (radius: 5) [04:31:52 -64612.022365] SLOW spr round 13 (radius: 5) [04:33:12] [worker #2] ML tree search #12, logLikelihood: -64648.906273 [04:33:43 -64610.617139] SLOW spr round 14 (radius: 5) [04:35:27 -64610.616716] SLOW spr round 15 (radius: 10) [04:37:12 -64610.616688] SLOW spr round 16 (radius: 15) [04:40:07 -64609.827190] SLOW spr round 17 (radius: 5) [04:42:21 -64609.203820] SLOW spr round 18 (radius: 5) [04:44:16 -64609.202584] SLOW spr round 19 (radius: 10) [04:46:06 -64609.202435] SLOW spr round 20 (radius: 15) [04:48:53 -64609.202392] SLOW spr round 21 (radius: 20) [04:53:15 -64609.202369] SLOW spr round 22 (radius: 25) [04:58:48 -64609.202355] Model parameter optimization (eps = 0.100000) [04:58:58] [worker #0] ML tree search #10, logLikelihood: -64607.692726 [04:58:58 -236631.304115] Initial branch length optimization [04:59:01 -193142.334056] Model parameter optimization (eps = 10.000000) [04:59:40 -191585.277757] AUTODETECT spr round 1 (radius: 5) [05:01:38 -141042.365869] AUTODETECT spr round 2 (radius: 10) [05:03:45 -105382.556604] AUTODETECT spr round 3 (radius: 15) [05:05:53 -91346.243922] AUTODETECT spr round 4 (radius: 20) [05:08:24 -81410.459671] AUTODETECT spr round 5 (radius: 25) [05:11:27 -76168.540629] SPR radius for FAST iterations: 25 (autodetect) [05:11:27 -76168.540629] Model parameter optimization (eps = 3.000000) [05:11:49 -76066.399197] FAST spr round 1 (radius: 25) [05:14:05 -65352.575074] FAST spr round 2 (radius: 25) [05:15:51 -64959.751164] FAST spr round 3 (radius: 25) [05:17:28 -64848.341742] FAST spr round 4 (radius: 25) [05:19:00 -64666.009411] FAST spr round 5 (radius: 25) [05:20:26 -64650.488581] FAST spr round 6 (radius: 25) [05:21:48 -64648.874192] FAST spr round 7 (radius: 25) [05:23:08 -64648.873864] Model parameter optimization (eps = 1.000000) [05:23:21 -64646.371268] SLOW spr round 1 (radius: 5) [05:25:04 -64627.644669] SLOW spr round 2 (radius: 5) [05:26:49 -64625.516654] SLOW spr round 3 (radius: 5) [05:28:35 -64624.279514] SLOW spr round 4 (radius: 5) [05:30:17 -64624.279412] SLOW spr round 5 (radius: 10) [05:32:03 -64623.596205] SLOW spr round 6 (radius: 5) [05:34:09 -64623.594888] SLOW spr round 7 (radius: 10) [05:36:06 -64623.594848] SLOW spr round 8 (radius: 15) [05:36:38] [worker #2] ML tree search #15, logLikelihood: -64615.937108 [05:38:53 -64623.594847] SLOW spr round 9 (radius: 20) [05:42:35] [worker #1] ML tree search #14, logLikelihood: -64619.818091 [05:43:18 -64623.594846] SLOW spr round 10 (radius: 25) [05:48:40 -64623.594846] Model parameter optimization (eps = 0.100000) [05:48:54] [worker #0] ML tree search #13, logLikelihood: -64623.129018 [05:48:54 -238035.377673] Initial branch length optimization [05:48:56 -193825.568447] Model parameter optimization (eps = 10.000000) [05:49:25 -192077.905362] AUTODETECT spr round 1 (radius: 5) [05:51:22 -142443.513025] AUTODETECT spr round 2 (radius: 10) [05:53:30 -108149.197943] AUTODETECT spr round 3 (radius: 15) [05:55:43 -90601.017197] AUTODETECT spr round 4 (radius: 20) [05:58:20 -82571.407491] AUTODETECT spr round 5 (radius: 25) [06:01:32 -79231.139167] SPR radius for FAST iterations: 25 (autodetect) [06:01:32 -79231.139167] Model parameter optimization (eps = 3.000000) [06:01:51 -79111.335607] FAST spr round 1 (radius: 25) [06:04:30 -65871.672142] FAST spr round 2 (radius: 25) [06:06:24 -64790.878461] FAST spr round 3 (radius: 25) [06:08:04 -64659.580980] FAST spr round 4 (radius: 25) [06:09:35 -64648.203597] FAST spr round 5 (radius: 25) [06:11:04 -64645.260979] FAST spr round 6 (radius: 25) [06:12:28 -64643.958503] FAST spr round 7 (radius: 25) [06:13:49 -64643.957578] Model parameter optimization (eps = 1.000000) [06:14:01 -64638.210574] SLOW spr round 1 (radius: 5) [06:15:49 -64617.832948] SLOW spr round 2 (radius: 5) [06:17:35 -64612.015238] SLOW spr round 3 (radius: 5) [06:19:20 -64611.636978] SLOW spr round 4 (radius: 5) [06:21:00 -64611.636279] SLOW spr round 5 (radius: 10) [06:22:46 -64609.626023] SLOW spr round 6 (radius: 5) [06:24:54 -64609.210459] SLOW spr round 7 (radius: 5) [06:26:47 -64609.208889] SLOW spr round 8 (radius: 10) [06:28:35 -64609.208712] SLOW spr round 9 (radius: 15) [06:31:34 -64606.784893] SLOW spr round 10 (radius: 5) [06:33:47 -64606.318224] SLOW spr round 11 (radius: 5) [06:35:43 -64606.122875] SLOW spr round 12 (radius: 5) [06:37:29 -64606.122633] SLOW spr round 13 (radius: 10) [06:39:15 -64606.122565] SLOW spr round 14 (radius: 15) [06:39:17] [worker #2] ML tree search #18, logLikelihood: -64628.416128 [06:42:11 -64606.122536] SLOW spr round 15 (radius: 20) [06:46:56 -64606.122524] SLOW spr round 16 (radius: 25) [06:52:21] [worker #1] ML tree search #17, logLikelihood: -64609.497278 [06:52:37 -64605.830420] SLOW spr round 17 (radius: 5) [06:54:51 -64605.830417] SLOW spr round 18 (radius: 10) [06:56:59 -64605.830414] SLOW spr round 19 (radius: 15) [06:59:45 -64605.830414] SLOW spr round 20 (radius: 20) [07:04:36 -64605.830414] SLOW spr round 21 (radius: 25) [07:10:15 -64605.830414] Model parameter optimization (eps = 0.100000) [07:10:21] [worker #0] ML tree search #16, logLikelihood: -64605.811700 [07:10:21 -236827.195334] Initial branch length optimization [07:10:24 -192193.237092] Model parameter optimization (eps = 10.000000) [07:11:06 -190530.213926] AUTODETECT spr round 1 (radius: 5) [07:13:02 -141341.256930] AUTODETECT spr round 2 (radius: 10) [07:15:08 -112604.533779] AUTODETECT spr round 3 (radius: 15) [07:17:28 -96456.277354] AUTODETECT spr round 4 (radius: 20) [07:20:14 -82646.028349] AUTODETECT spr round 5 (radius: 25) [07:22:56 -78443.419182] SPR radius for FAST iterations: 25 (autodetect) [07:22:56 -78443.419182] Model parameter optimization (eps = 3.000000) [07:23:19 -78312.396567] FAST spr round 1 (radius: 25) [07:25:41 -65472.109230] FAST spr round 2 (radius: 25) [07:27:27 -64746.802265] FAST spr round 3 (radius: 25) [07:29:08 -64669.708050] FAST spr round 4 (radius: 25) [07:30:41 -64647.169756] FAST spr round 5 (radius: 25) [07:32:10 -64638.184282] FAST spr round 6 (radius: 25) [07:33:31 -64638.184051] Model parameter optimization (eps = 1.000000) [07:33:40 -64635.288578] SLOW spr round 1 (radius: 5) [07:35:26 -64625.321850] SLOW spr round 2 (radius: 5) [07:37:11 -64614.455866] SLOW spr round 3 (radius: 5) [07:38:55 -64613.607561] SLOW spr round 4 (radius: 5) [07:40:34 -64613.607375] SLOW spr round 5 (radius: 10) [07:42:17 -64613.607278] SLOW spr round 6 (radius: 15) [07:45:05 -64613.607222] SLOW spr round 7 (radius: 20) [07:49:19 -64613.607183] SLOW spr round 8 (radius: 25) [07:54:40 -64613.369262] SLOW spr round 9 (radius: 5) [07:56:52 -64612.471613] SLOW spr round 10 (radius: 5) [07:58:48 -64612.471579] SLOW spr round 11 (radius: 10) [08:00:35 -64612.471433] SLOW spr round 12 (radius: 15) [08:03:04] [worker #1] ML tree search #20, logLikelihood: -64613.914515 [08:03:16 -64612.471422] SLOW spr round 13 (radius: 20) [08:07:31 -64612.471412] SLOW spr round 14 (radius: 25) [08:12:51 -64612.471404] Model parameter optimization (eps = 0.100000) [08:12:54] [worker #0] ML tree search #19, logLikelihood: -64612.465181 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.191180,0.609462) (0.257715,0.694899) (0.375457,0.986675) (0.175649,1.901201) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -64605.811700 AIC score: 132981.623401 / AICc score: 7243201.623401 / BIC score: 138553.357404 Free parameters (model + branch lengths): 1885 WARNING: Number of free parameters (K=1885) is larger than alignment size (n=142). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96A99/3_mltree/Q96A99.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96A99/3_mltree/Q96A99.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96A99/3_mltree/Q96A99.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q96A99/3_mltree/Q96A99.raxml.log Analysis started: 01-Jul-2021 11:18:46 / finished: 01-Jul-2021 19:31:41 Elapsed time: 29575.038 seconds Consumed energy: 2660.554 Wh (= 13 km in an electric car, or 67 km with an e-scooter!)