RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jul-2021 18:58:44 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q969G3/2_msa/Q969G3_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q969G3/3_mltree/Q969G3 --seed 2 --threads 3 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q969G3/2_msa/Q969G3_trimmed_msa.fasta [00:00:00] Loaded alignment with 699 taxa and 172 sites WARNING: Sequences tr_A0A1D5PEI4_A0A1D5PEI4_CHICK_9031 and tr_U3I6A0_U3I6A0_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PEI4_A0A1D5PEI4_CHICK_9031 and tr_A0A087QX53_A0A087QX53_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PEI4_A0A1D5PEI4_CHICK_9031 and tr_A0A0A0AGH4_A0A0A0AGH4_CHAVO_50402 are exactly identical! WARNING: Sequences sp_O54941_SMCE1_MOUSE_10090 and tr_H0UTC1_H0UTC1_CAVPO_10141 are exactly identical! WARNING: Sequences sp_O54941_SMCE1_MOUSE_10090 and tr_G5AX73_G5AX73_HETGA_10181 are exactly identical! WARNING: Sequences sp_O54941_SMCE1_MOUSE_10090 and tr_A0A1U7QNQ5_A0A1U7QNQ5_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3XVZ0_M3XVZ0_MUSPF_9669 and tr_F1PDR6_F1PDR6_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XVZ0_M3XVZ0_MUSPF_9669 and tr_A0A2Y9KKI7_A0A2Y9KKI7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_G1P2U2_G1P2U2_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A2J8WAE4_A0A2J8WAE4_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A2I3RU20_A0A2I3RU20_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_W5PZK0_W5PZK0_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_H0WJ27_H0WJ27_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and sp_Q969G3_SMCE1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_G3TFD9_G3TFD9_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_F7FS83_F7FS83_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_F1RXE6_F1RXE6_PIG_9823 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_G1LNF3_G1LNF3_AILME_9646 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_L5JTH8_L5JTH8_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A337S297_A0A337S297_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A2I3MKZ6_A0A2I3MKZ6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A0D9S304_A0A0D9S304_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A2K5M1A0_A0A2K5M1A0_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A2K6ASS5_A0A2K6ASS5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A2K5Z3Q1_A0A2K5Z3Q1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A2R9BRX4_A0A2R9BRX4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A2U3V7W3_A0A2U3V7W3_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A2Y9DNU1_A0A2Y9DNU1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A2Y9JZJ0_A0A2Y9JZJ0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A2Y9LX12_A0A2Y9LX12_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A2Y9F1D7_A0A2Y9F1D7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A384BZX7_A0A384BZX7_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1QNI4_G1QNI4_NOMLE_61853 and tr_A0A383ZRB1_A0A383ZRB1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2I2YGI9_A0A2I2YGI9_GORGO_9595 and tr_K7CYZ5_K7CYZ5_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YGI9_A0A2I2YGI9_GORGO_9595 and sp_Q9P0W2_HM20B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2YGI9_A0A2I2YGI9_GORGO_9595 and tr_A0A0A0MU69_A0A0A0MU69_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2YGI9_A0A2I2YGI9_GORGO_9595 and tr_A0A0D9RFG5_A0A0D9RFG5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2YGI9_A0A2I2YGI9_GORGO_9595 and tr_A0A2K6CY00_A0A2K6CY00_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2YGI9_A0A2I2YGI9_GORGO_9595 and tr_A0A2R9CDQ1_A0A2R9CDQ1_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2ZLZ3_A0A2I2ZLZ3_GORGO_9595 and tr_A0A2R9BYW8_A0A2R9BYW8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_H2NQW0_H2NQW0_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_A0A2I3STP6_A0A2I3STP6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_F7AKD6_F7AKD6_HORSE_9796 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_I3MDU1_I3MDU1_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and sp_O15405_TOX3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_F6S6N6_F6S6N6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_F7II29_F7II29_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_G7Q143_G7Q143_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_A0A2I3NBJ6_A0A2I3NBJ6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_A0A0D9QZ41_A0A0D9QZ41_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_A0A1U7R4F5_A0A1U7R4F5_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_A0A2K5KM48_A0A2K5KM48_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_A0A2K6BSC2_A0A2K6BSC2_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_A0A2K5XGA6_A0A2K5XGA6_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_A0A2R9CKY6_A0A2R9CKY6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R158_G3R158_GORGO_9595 and tr_A0A2Y9SYE1_A0A2Y9SYE1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G3R816_G3R816_GORGO_9595 and tr_G1SWA6_G1SWA6_RABIT_9986 are exactly identical! WARNING: Sequences tr_G3R816_G3R816_GORGO_9595 and tr_A5PKF6_A5PKF6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_K7F3H1_K7F3H1_PELSI_13735 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_H0YVW3_H0YVW3_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_U3JC74_U3JC74_FICAL_59894 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_U3IKM1_U3IKM1_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_A0A151PC75_A0A151PC75_ALLMI_8496 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_A0A091ESH9_A0A091ESH9_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_A0A091JP09_A0A091JP09_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_A0A093SDX5_A0A093SDX5_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_A0A087QJ54_A0A087QJ54_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_A0A0A0ARS7_A0A0A0ARS7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_A0A1U8DCN7_A0A1U8DCN7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_A0A218UN58_A0A218UN58_9PASE_299123 are exactly identical! WARNING: Sequences tr_G1MV87_G1MV87_MELGA_9103 and tr_A0A226NTX1_A0A226NTX1_COLVI_9014 are exactly identical! WARNING: Sequences tr_B5DN52_B5DN52_DROPS_46245 and tr_B4H2F4_B4H2F4_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2QX86_E2QX86_CANLF_9615 and tr_F6XQL7_F6XQL7_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3SG34_A0A2I3SG34_PANTR_9598 and tr_A0A2R8ZWE9_A0A2R8ZWE9_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7BMM9_F7BMM9_MONDO_13616 and tr_G3WVU6_G3WVU6_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5Q857_W5Q857_SHEEP_9940 and tr_E1BKT2_E1BKT2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M4AUS8_M4AUS8_XIPMA_8083 and tr_A0A087Y6Z3_A0A087Y6Z3_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AH79_A0A088AH79_APIME_7460 and tr_A0A2A3ETV7_A0A2A3ETV7_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158N903_A0A158N903_ATTCE_12957 and tr_A0A151WNQ3_A0A151WNQ3_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158N903_A0A158N903_ATTCE_12957 and tr_A0A151I192_A0A151I192_9HYME_520822 are exactly identical! WARNING: Sequences tr_I3LZW9_I3LZW9_ICTTR_43179 and tr_A0A1U7TLY1_A0A1U7TLY1_TARSY_1868482 are exactly identical! WARNING: Sequences tr_I3NF98_I3NF98_ICTTR_43179 and sp_Q32L68_HM20B_BOVIN_9913 are exactly identical! WARNING: Sequences tr_H0VHN5_H0VHN5_CAVPO_10141 and tr_A0A286ZJS4_A0A286ZJS4_PIG_9823 are exactly identical! WARNING: Sequences tr_H0VHN5_H0VHN5_CAVPO_10141 and tr_A0A2Y9LUG4_A0A2Y9LUG4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A0K0JQU5_A0A0K0JQU5_BRUMA_6279 and tr_A0A158PQQ0_A0A158PQQ0_BRUPA_6280 are exactly identical! WARNING: Sequences tr_G5BLU8_G5BLU8_HETGA_10181 and tr_A0A091E5Q4_A0A091E5Q4_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F4P6F8_F4P6F8_BATDJ_684364 and tr_A0A177WQX9_A0A177WQX9_BATDE_403673 are exactly identical! WARNING: Sequences tr_G3TCN0_G3TCN0_LOXAF_9785 and tr_A0A2Y9EA95_A0A2Y9EA95_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0ZAX2_H0ZAX2_TAEGU_59729 and tr_U3JBC3_U3JBC3_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZAX2_H0ZAX2_TAEGU_59729 and tr_A0A091W1N4_A0A091W1N4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0ZAX2_H0ZAX2_TAEGU_59729 and tr_A0A218UXN1_A0A218UXN1_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1REZ8_F1REZ8_PIG_9823 and tr_A0A383YXX4_A0A383YXX4_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1LGH5_G1LGH5_AILME_9646 and tr_A0A2Y9L5Z3_A0A2Y9L5Z3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B3RPJ8_B3RPJ8_TRIAD_10228 and tr_A0A369SFL9_A0A369SFL9_9METZ_287889 are exactly identical! WARNING: Sequences tr_M4EW71_M4EW71_BRARP_51351 and tr_A0A078EWY5_A0A078EWY5_BRANA_3708 are exactly identical! WARNING: Sequences tr_U5HJI0_U5HJI0_USTV1_683840 and tr_A0A2X0P8D7_A0A2X0P8D7_9BASI_796604 are exactly identical! WARNING: Sequences tr_V2Y0J5_V2Y0J5_MONRO_1381753 and tr_A0A0W0FKD3_A0A0W0FKD3_9AGAR_221103 are exactly identical! WARNING: Sequences tr_A0A044V329_A0A044V329_ONCVO_6282 and tr_A0A182E088_A0A182E088_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0A1MTG4_A0A0A1MTG4_9FUNG_58291 and tr_A0A2G4SGK9_A0A2G4SGK9_9FUNG_1340429 are exactly identical! WARNING: Sequences tr_A0A0A1MTG4_A0A0A1MTG4_9FUNG_58291 and tr_A0A367J788_A0A367J788_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0A1NSY6_A0A0A1NSY6_9FUNG_58291 and tr_A0A367J217_A0A367J217_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A151NGM6_A0A151NGM6_ALLMI_8496 and tr_A0A3Q0H100_A0A3Q0H100_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091UUX9_A0A091UUX9_NIPNI_128390 and tr_A0A091HMJ9_A0A091HMJ9_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091WXH2_A0A091WXH2_NIPNI_128390 and tr_A0A087QXR9_A0A087QXR9_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A2I0LLY7_A0A2I0LLY7_COLLI_8932 and tr_A0A1V4JQK4_A0A1V4JQK4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1DHK9_A0A0V1DHK9_TRIBR_45882 and tr_A0A0V0VYC7_A0A0V0VYC7_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DHK9_A0A0V1DHK9_TRIBR_45882 and tr_A0A0V0ZUJ8_A0A0V0ZUJ8_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1DHK9_A0A0V1DHK9_TRIBR_45882 and tr_A0A0V0UJ09_A0A0V0UJ09_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0W1M6_A0A0V0W1M6_9BILA_92179 and tr_A0A0V1PJG6_A0A0V1PJG6_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1M9P2_A0A0V1M9P2_9BILA_268474 and tr_A0A0V1IAH7_A0A0V1IAH7_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3KVK0_A0A1S3KVK0_SALSA_8030 and tr_A0A1S3PWK9_A0A1S3PWK9_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3RAD2_A0A1S3RAD2_SALSA_8030 and tr_A0A1S3S4R6_A0A1S3S4R6_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3RAD2_A0A1S3RAD2_SALSA_8030 and tr_A0A060X6L0_A0A060X6L0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1V8UUA1_A0A1V8UUA1_9PEZI_1974281 and tr_A0A1V8SQ25_A0A1V8SQ25_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A2D0QEW6_A0A2D0QEW6_ICTPU_7998 and tr_A0A2D0QFX8_A0A2D0QFX8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QEW6_A0A2D0QEW6_ICTPU_7998 and tr_A0A2D0QFY0_A0A2D0QFY0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QEW6_A0A2D0QEW6_ICTPU_7998 and tr_A0A2D0QHB7_A0A2D0QHB7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QEW6_A0A2D0QEW6_ICTPU_7998 and tr_A0A2D0QHC2_A0A2D0QHC2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QEW6_A0A2D0QEW6_ICTPU_7998 and tr_A0A2D0QI75_A0A2D0QI75_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RSL0_A0A2D0RSL0_ICTPU_7998 and tr_A0A2D0RU58_A0A2D0RU58_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T3D7_A0A2D0T3D7_ICTPU_7998 and tr_A0A2D0T3F1_A0A2D0T3F1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T3D7_A0A2D0T3D7_ICTPU_7998 and tr_A0A2D0T3F3_A0A2D0T3F3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T3D7_A0A2D0T3D7_ICTPU_7998 and tr_A0A2D0T3G5_A0A2D0T3G5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T3D7_A0A2D0T3D7_ICTPU_7998 and tr_A0A2D0T3N9_A0A2D0T3N9_ICTPU_7998 are exactly identical! WARNING: Duplicate sequences found: 124 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q969G3/3_mltree/Q969G3.raxml.reduced.phy Alignment comprises 1 partitions and 172 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 172 / 172 Gaps: 16.85 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q969G3/3_mltree/Q969G3.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 699 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 172 / 13760 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -203362.222489] Initial branch length optimization [00:00:02 -158837.655750] Model parameter optimization (eps = 10.000000) [00:00:23 -158526.924160] AUTODETECT spr round 1 (radius: 5) [00:01:34 -101837.225342] AUTODETECT spr round 2 (radius: 10) [00:02:50 -81492.329056] AUTODETECT spr round 3 (radius: 15) [00:04:16 -67881.765169] AUTODETECT spr round 4 (radius: 20) [00:05:56 -60481.958043] AUTODETECT spr round 5 (radius: 25) [00:07:59 -54978.919992] SPR radius for FAST iterations: 25 (autodetect) [00:07:59 -54978.919992] Model parameter optimization (eps = 3.000000) [00:08:13 -54954.462759] FAST spr round 1 (radius: 25) [00:09:48 -47537.512247] FAST spr round 2 (radius: 25) [00:11:03 -47338.613240] FAST spr round 3 (radius: 25) [00:12:10 -47301.860403] FAST spr round 4 (radius: 25) [00:13:10 -47290.792735] FAST spr round 5 (radius: 25) [00:14:05 -47289.407354] FAST spr round 6 (radius: 25) [00:14:59 -47289.406900] Model parameter optimization (eps = 1.000000) [00:15:06 -47288.563153] SLOW spr round 1 (radius: 5) [00:16:17 -47280.730585] SLOW spr round 2 (radius: 5) [00:17:29 -47278.295764] SLOW spr round 3 (radius: 5) [00:18:42 -47272.293521] SLOW spr round 4 (radius: 5) [00:19:54 -47269.947014] SLOW spr round 5 (radius: 5) [00:21:03 -47269.946558] SLOW spr round 6 (radius: 10) [00:22:20 -47268.227214] SLOW spr round 7 (radius: 5) [00:23:46 -47268.223929] SLOW spr round 8 (radius: 10) [00:25:09 -47268.223257] SLOW spr round 9 (radius: 15) [00:27:01 -47268.223120] SLOW spr round 10 (radius: 20) [00:29:38 -47268.223090] SLOW spr round 11 (radius: 25) [00:32:47 -47268.223083] Model parameter optimization (eps = 0.100000) [00:32:55] [worker #0] ML tree search #1, logLikelihood: -47268.047523 [00:32:55 -203021.836216] Initial branch length optimization [00:32:57 -158276.023554] Model parameter optimization (eps = 10.000000) [00:33:30 -157938.905489] AUTODETECT spr round 1 (radius: 5) [00:34:42 -101412.765199] AUTODETECT spr round 2 (radius: 10) [00:36:00 -81398.868505] AUTODETECT spr round 3 (radius: 15) [00:37:26 -69117.722035] AUTODETECT spr round 4 (radius: 20) [00:39:00 -63546.232842] AUTODETECT spr round 5 (radius: 25) [00:40:51 -57739.011323] SPR radius for FAST iterations: 25 (autodetect) [00:40:51 -57739.011323] Model parameter optimization (eps = 3.000000) [00:41:07 -57680.381351] FAST spr round 1 (radius: 25) [00:42:50 -47693.891266] FAST spr round 2 (radius: 25) [00:43:07] [worker #2] ML tree search #3, logLikelihood: -47010.112725 [00:44:05 -47100.440604] FAST spr round 3 (radius: 25) [00:45:14 -47040.929803] FAST spr round 4 (radius: 25) [00:46:12 -47036.093073] FAST spr round 5 (radius: 25) [00:47:07 -47035.847203] FAST spr round 6 (radius: 25) [00:48:00 -47035.846829] Model parameter optimization (eps = 1.000000) [00:48:11 -47032.426126] SLOW spr round 1 (radius: 5) [00:49:22 -47018.579819] SLOW spr round 2 (radius: 5) [00:50:34 -47012.485290] SLOW spr round 3 (radius: 5) [00:51:43 -47011.392958] SLOW spr round 4 (radius: 5) [00:52:52 -47011.100735] SLOW spr round 5 (radius: 5) [00:54:00 -47011.100544] SLOW spr round 6 (radius: 10) [00:55:18 -47007.677657] SLOW spr round 7 (radius: 5) [00:56:45 -47007.648644] SLOW spr round 8 (radius: 10) [00:58:09 -47007.646544] SLOW spr round 9 (radius: 15) [00:59:58 -47006.840356] SLOW spr round 10 (radius: 5) [01:01:29 -47006.840262] SLOW spr round 11 (radius: 10) [01:02:57 -47006.840259] SLOW spr round 12 (radius: 15) [01:04:43 -47006.840258] SLOW spr round 13 (radius: 20) [01:05:01] [worker #1] ML tree search #2, logLikelihood: -46996.987161 [01:06:54 -47006.840258] SLOW spr round 14 (radius: 25) [01:09:28 -47006.034268] SLOW spr round 15 (radius: 5) [01:11:05 -47006.034253] SLOW spr round 16 (radius: 10) [01:12:39 -47006.034253] SLOW spr round 17 (radius: 15) [01:14:27 -47006.034252] SLOW spr round 18 (radius: 20) [01:16:39 -47006.034252] SLOW spr round 19 (radius: 25) [01:19:12 -47006.034252] Model parameter optimization (eps = 0.100000) [01:19:20] [worker #0] ML tree search #4, logLikelihood: -47005.389404 [01:19:20 -201863.997682] Initial branch length optimization [01:19:22 -157804.855821] Model parameter optimization (eps = 10.000000) [01:19:45 -157494.928005] AUTODETECT spr round 1 (radius: 5) [01:20:58 -102197.893590] AUTODETECT spr round 2 (radius: 10) [01:22:15 -79528.140491] AUTODETECT spr round 3 (radius: 15) [01:23:42 -63991.869177] AUTODETECT spr round 4 (radius: 20) [01:25:22 -56237.309254] AUTODETECT spr round 5 (radius: 25) [01:27:15 -54255.610740] SPR radius for FAST iterations: 25 (autodetect) [01:27:15 -54255.610740] Model parameter optimization (eps = 3.000000) [01:27:33 -54222.919458] FAST spr round 1 (radius: 25) [01:29:09 -47395.261541] FAST spr round 2 (radius: 25) [01:30:26 -47110.785292] FAST spr round 3 (radius: 25) [01:31:32 -47068.561744] FAST spr round 4 (radius: 25) [01:32:31 -47061.230692] FAST spr round 5 (radius: 25) [01:33:26 -47060.544679] FAST spr round 6 (radius: 25) [01:34:19 -47060.544259] Model parameter optimization (eps = 1.000000) [01:34:33 -47057.732749] SLOW spr round 1 (radius: 5) [01:35:42 -47039.118519] SLOW spr round 2 (radius: 5) [01:36:54 -47037.013418] SLOW spr round 3 (radius: 5) [01:38:02 -47037.013188] SLOW spr round 4 (radius: 10) [01:39:20 -47032.833618] SLOW spr round 5 (radius: 5) [01:40:48 -47030.875684] SLOW spr round 6 (radius: 5) [01:42:06 -47030.338470] SLOW spr round 7 (radius: 5) [01:43:16 -47030.338026] SLOW spr round 8 (radius: 10) [01:44:32 -47030.337851] SLOW spr round 9 (radius: 15) [01:46:24 -47027.169016] SLOW spr round 10 (radius: 5) [01:47:57 -47024.848734] SLOW spr round 11 (radius: 5) [01:49:16 -47024.434337] SLOW spr round 12 (radius: 5) [01:50:31 -47020.103007] SLOW spr round 13 (radius: 5) [01:51:39 -47020.102339] SLOW spr round 14 (radius: 10) [01:52:54 -47020.101800] SLOW spr round 15 (radius: 15) [01:54:44 -47020.101281] SLOW spr round 16 (radius: 20) [01:54:54] [worker #2] ML tree search #6, logLikelihood: -46993.663318 [01:57:02] [worker #1] ML tree search #5, logLikelihood: -47013.758298 [01:57:05 -47020.100774] SLOW spr round 17 (radius: 25) [02:00:06 -47019.087172] SLOW spr round 18 (radius: 5) [02:01:42 -47015.899442] SLOW spr round 19 (radius: 5) [02:03:02 -47015.898946] SLOW spr round 20 (radius: 10) [02:04:21 -47015.898482] SLOW spr round 21 (radius: 15) [02:06:09 -47015.898026] SLOW spr round 22 (radius: 20) [02:08:31 -47015.897578] SLOW spr round 23 (radius: 25) [02:11:28 -47015.897137] Model parameter optimization (eps = 0.100000) [02:11:37] [worker #0] ML tree search #7, logLikelihood: -47015.479088 [02:11:37 -203124.164522] Initial branch length optimization [02:11:39 -159062.906342] Model parameter optimization (eps = 10.000000) [02:12:05 -158680.851632] AUTODETECT spr round 1 (radius: 5) [02:13:15 -103133.919365] AUTODETECT spr round 2 (radius: 10) [02:14:30 -75560.566759] AUTODETECT spr round 3 (radius: 15) [02:15:59 -57710.766801] AUTODETECT spr round 4 (radius: 20) [02:17:31 -53353.424810] AUTODETECT spr round 5 (radius: 25) [02:19:21 -52361.074939] SPR radius for FAST iterations: 25 (autodetect) [02:19:21 -52361.074939] Model parameter optimization (eps = 3.000000) [02:19:38 -52322.532793] FAST spr round 1 (radius: 25) [02:21:05 -47304.652384] FAST spr round 2 (radius: 25) [02:22:14 -47059.344840] FAST spr round 3 (radius: 25) [02:23:18 -47041.484831] FAST spr round 4 (radius: 25) [02:24:16 -47035.567446] FAST spr round 5 (radius: 25) [02:25:09 -47035.081438] FAST spr round 6 (radius: 25) [02:26:00 -47035.081147] Model parameter optimization (eps = 1.000000) [02:26:10 -47033.176705] SLOW spr round 1 (radius: 5) [02:27:16 -47024.348464] SLOW spr round 2 (radius: 5) [02:28:24 -47019.555071] SLOW spr round 3 (radius: 5) [02:29:34 -47019.260286] SLOW spr round 4 (radius: 5) [02:30:40 -47019.260040] SLOW spr round 5 (radius: 10) [02:31:55 -47017.943260] SLOW spr round 6 (radius: 5) [02:33:23 -47017.407015] SLOW spr round 7 (radius: 5) [02:34:39 -47017.406781] SLOW spr round 8 (radius: 10) [02:35:56 -47017.406774] SLOW spr round 9 (radius: 15) [02:37:45 -47017.406773] SLOW spr round 10 (radius: 20) [02:40:00 -47010.898893] SLOW spr round 11 (radius: 5) [02:41:33 -47010.898838] SLOW spr round 12 (radius: 10) [02:43:03 -47010.898838] SLOW spr round 13 (radius: 15) [02:44:50 -47010.898838] SLOW spr round 14 (radius: 20) [02:47:04 -47010.898838] SLOW spr round 15 (radius: 25) [02:47:42] [worker #1] ML tree search #8, logLikelihood: -46994.000743 [02:49:36 -47010.053518] SLOW spr round 16 (radius: 5) [02:51:11 -47009.948307] SLOW spr round 17 (radius: 5) [02:52:32 -47009.947593] SLOW spr round 18 (radius: 10) [02:53:50 -47009.947589] SLOW spr round 19 (radius: 15) [02:55:37 -47009.947589] SLOW spr round 20 (radius: 20) [02:57:03] [worker #2] ML tree search #9, logLikelihood: -47010.469203 [02:57:45 -47009.947589] SLOW spr round 21 (radius: 25) [03:00:08 -47009.420849] SLOW spr round 22 (radius: 5) [03:01:42 -47009.420847] SLOW spr round 23 (radius: 10) [03:03:14 -47009.420847] SLOW spr round 24 (radius: 15) [03:04:59 -47009.420847] SLOW spr round 25 (radius: 20) [03:07:08 -47009.120922] SLOW spr round 26 (radius: 5) [03:08:42 -47009.120908] SLOW spr round 27 (radius: 10) [03:10:10 -47009.120908] SLOW spr round 28 (radius: 15) [03:11:55 -47009.120908] SLOW spr round 29 (radius: 20) [03:14:04 -47009.120908] SLOW spr round 30 (radius: 25) [03:16:28 -47009.120908] Model parameter optimization (eps = 0.100000) [03:16:32] [worker #0] ML tree search #10, logLikelihood: -47009.115454 [03:16:32 -203546.491461] Initial branch length optimization [03:16:34 -157708.265342] Model parameter optimization (eps = 10.000000) [03:17:06 -157308.183364] AUTODETECT spr round 1 (radius: 5) [03:18:18 -104532.537548] AUTODETECT spr round 2 (radius: 10) [03:19:40 -79818.021514] AUTODETECT spr round 3 (radius: 15) [03:21:14 -66060.777217] AUTODETECT spr round 4 (radius: 20) [03:22:53 -59377.112137] AUTODETECT spr round 5 (radius: 25) [03:24:43 -55433.740307] SPR radius for FAST iterations: 25 (autodetect) [03:24:43 -55433.740307] Model parameter optimization (eps = 3.000000) [03:24:58 -55399.169409] FAST spr round 1 (radius: 25) [03:26:39 -47787.850694] FAST spr round 2 (radius: 25) [03:27:51 -47090.718963] FAST spr round 3 (radius: 25) [03:28:54 -47052.906103] FAST spr round 4 (radius: 25) [03:29:50 -47044.527140] FAST spr round 5 (radius: 25) [03:30:43 -47043.738422] FAST spr round 6 (radius: 25) [03:31:34 -47043.738227] Model parameter optimization (eps = 1.000000) [03:31:45 -47037.361184] SLOW spr round 1 (radius: 5) [03:32:54 -47022.020725] SLOW spr round 2 (radius: 5) [03:34:03 -47012.898144] SLOW spr round 3 (radius: 5) [03:35:12 -47008.868527] SLOW spr round 4 (radius: 5) [03:36:20 -47006.020114] SLOW spr round 5 (radius: 5) [03:36:39] [worker #2] ML tree search #12, logLikelihood: -47002.225551 [03:37:26 -47005.928251] SLOW spr round 6 (radius: 10) [03:38:27] [worker #1] ML tree search #11, logLikelihood: -46981.738903 [03:38:41 -47005.839102] SLOW spr round 7 (radius: 15) [03:40:39 -47005.651316] SLOW spr round 8 (radius: 5) [03:42:08 -47005.320291] SLOW spr round 9 (radius: 5) [03:43:25 -47005.320277] SLOW spr round 10 (radius: 10) [03:44:43 -47005.320277] SLOW spr round 11 (radius: 15) [03:46:39 -47005.320277] SLOW spr round 12 (radius: 20) [03:49:21 -47005.320277] SLOW spr round 13 (radius: 25) [03:52:45 -47005.320277] Model parameter optimization (eps = 0.100000) [03:52:55] [worker #0] ML tree search #13, logLikelihood: -47005.110019 [03:52:55 -205044.606394] Initial branch length optimization [03:52:57 -159589.489490] Model parameter optimization (eps = 10.000000) [03:53:24 -158976.302615] AUTODETECT spr round 1 (radius: 5) [03:54:37 -105542.112086] AUTODETECT spr round 2 (radius: 10) [03:55:56 -83463.274988] AUTODETECT spr round 3 (radius: 15) [03:57:24 -67440.549927] AUTODETECT spr round 4 (radius: 20) [03:59:06 -56830.637633] AUTODETECT spr round 5 (radius: 25) [04:01:07 -53915.402643] SPR radius for FAST iterations: 25 (autodetect) [04:01:07 -53915.402643] Model parameter optimization (eps = 3.000000) [04:01:24 -53872.881328] FAST spr round 1 (radius: 25) [04:03:08 -47689.016283] FAST spr round 2 (radius: 25) [04:04:26 -47143.796285] FAST spr round 3 (radius: 25) [04:05:35 -47033.300312] FAST spr round 4 (radius: 25) [04:06:32 -47022.624693] FAST spr round 5 (radius: 25) [04:07:24 -47022.610879] Model parameter optimization (eps = 1.000000) [04:07:35 -47020.277907] SLOW spr round 1 (radius: 5) [04:08:44 -47010.900523] SLOW spr round 2 (radius: 5) [04:09:53 -47007.563637] SLOW spr round 3 (radius: 5) [04:11:02 -47007.525439] SLOW spr round 4 (radius: 10) [04:12:18 -47007.278576] SLOW spr round 5 (radius: 5) [04:13:45 -47007.277613] SLOW spr round 6 (radius: 10) [04:15:07 -47007.277482] SLOW spr round 7 (radius: 15) [04:17:01 -47007.277448] SLOW spr round 8 (radius: 20) [04:19:36 -47005.196693] SLOW spr round 9 (radius: 5) [04:21:12 -47005.062163] SLOW spr round 10 (radius: 5) [04:22:36 -47004.842012] SLOW spr round 11 (radius: 5) [04:23:50 -47004.841994] SLOW spr round 12 (radius: 10) [04:25:06 -47004.841988] SLOW spr round 13 (radius: 15) [04:26:03] [worker #2] ML tree search #15, logLikelihood: -46978.431707 [04:27:02 -47004.793161] SLOW spr round 14 (radius: 20) [04:27:14] [worker #1] ML tree search #14, logLikelihood: -46977.961683 [04:29:40 -47004.793158] SLOW spr round 15 (radius: 25) [04:32:59 -47004.793156] Model parameter optimization (eps = 0.100000) [04:33:08] [worker #0] ML tree search #16, logLikelihood: -47004.497741 [04:33:08 -203341.750456] Initial branch length optimization [04:33:10 -158473.270175] Model parameter optimization (eps = 10.000000) [04:33:47 -158016.014455] AUTODETECT spr round 1 (radius: 5) [04:34:59 -104494.388969] AUTODETECT spr round 2 (radius: 10) [04:36:16 -82137.209774] AUTODETECT spr round 3 (radius: 15) [04:37:42 -70895.486584] AUTODETECT spr round 4 (radius: 20) [04:39:29 -60286.631095] AUTODETECT spr round 5 (radius: 25) [04:41:44 -56959.152370] SPR radius for FAST iterations: 25 (autodetect) [04:41:44 -56959.152370] Model parameter optimization (eps = 3.000000) [04:42:03 -56903.480440] FAST spr round 1 (radius: 25) [04:43:38 -47641.336081] FAST spr round 2 (radius: 25) [04:44:54 -47076.663589] FAST spr round 3 (radius: 25) [04:46:01 -47040.447398] FAST spr round 4 (radius: 25) [04:46:56 -47035.221101] FAST spr round 5 (radius: 25) [04:47:48 -47035.220495] Model parameter optimization (eps = 1.000000) [04:47:57 -47034.049715] SLOW spr round 1 (radius: 5) [04:49:05 -47021.647089] SLOW spr round 2 (radius: 5) [04:50:15 -47013.346076] SLOW spr round 3 (radius: 5) [04:51:25 -47010.361646] SLOW spr round 4 (radius: 5) [04:52:36 -47009.465700] SLOW spr round 5 (radius: 5) [04:53:46 -47007.465007] SLOW spr round 6 (radius: 5) [04:54:55 -47007.124349] SLOW spr round 7 (radius: 5) [04:56:01 -47007.124339] SLOW spr round 8 (radius: 10) [04:57:17 -47002.917485] SLOW spr round 9 (radius: 5) [04:58:44 -47002.916846] SLOW spr round 10 (radius: 10) [05:00:08 -47002.916805] SLOW spr round 11 (radius: 15) [05:01:57 -47002.916802] SLOW spr round 12 (radius: 20) [05:04:23 -47002.245494] SLOW spr round 13 (radius: 5) [05:05:57 -46999.499136] SLOW spr round 14 (radius: 5) [05:07:18 -46999.499133] SLOW spr round 15 (radius: 10) [05:08:37 -46999.499133] SLOW spr round 16 (radius: 15) [05:10:28 -46999.499133] SLOW spr round 17 (radius: 20) [05:12:53 -46998.286943] SLOW spr round 18 (radius: 5) [05:14:28 -46994.467551] SLOW spr round 19 (radius: 5) [05:15:49 -46994.467551] SLOW spr round 20 (radius: 10) [05:16:14] [worker #1] ML tree search #17, logLikelihood: -47000.137934 [05:17:08 -46991.511970] SLOW spr round 21 (radius: 5) [05:18:33 -46991.511969] SLOW spr round 22 (radius: 10) [05:19:54 -46991.041186] SLOW spr round 23 (radius: 5) [05:21:18 -46991.041181] SLOW spr round 24 (radius: 10) [05:21:22] [worker #2] ML tree search #18, logLikelihood: -46997.782855 [05:22:39 -46991.041181] SLOW spr round 25 (radius: 15) [05:24:28 -46991.041181] SLOW spr round 26 (radius: 20) [05:26:53 -46991.041181] SLOW spr round 27 (radius: 25) [05:29:42 -46991.041181] Model parameter optimization (eps = 0.100000) [05:29:50] [worker #0] ML tree search #19, logLikelihood: -46990.629043 [05:53:06] [worker #1] ML tree search #20, logLikelihood: -47036.619253 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.080647,0.147508) (0.066097,0.250967) (0.220123,0.537134) (0.633133,1.347711) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -46977.961683 AIC score: 96757.923365 / AICc score: 4025161.923365 / BIC score: 101167.563127 Free parameters (model + branch lengths): 1401 WARNING: Number of free parameters (K=1401) is larger than alignment size (n=172). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q969G3/3_mltree/Q969G3.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q969G3/3_mltree/Q969G3.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q969G3/3_mltree/Q969G3.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q969G3/3_mltree/Q969G3.raxml.log Analysis started: 02-Jul-2021 18:58:44 / finished: 03-Jul-2021 00:51:50 Elapsed time: 21186.890 seconds Consumed energy: 2025.175 Wh (= 10 km in an electric car, or 51 km with an e-scooter!)