RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:37:58 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q92963/2_msa/Q92963_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q92963/3_mltree/Q92963.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q92963/4_raxmlng_ancestral/Q92963 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622648278 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q92963/2_msa/Q92963_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 219 sites WARNING: Sequences tr_B4QHF1_B4QHF1_DROSI_7240 and tr_B4HSJ7_B4HSJ7_DROSE_7238 are exactly identical! WARNING: Sequences tr_Q71TY0_Q71TY0_DROSI_7240 and sp_P08645_RAP1_DROME_7227 are exactly identical! WARNING: Sequences tr_Q71TY0_Q71TY0_DROSI_7240 and tr_B4HW18_B4HW18_DROSE_7238 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A158P003_A0A158P003_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_F4X3L6_F4X3L6_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A026VTT4_A0A026VTT4_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A151X3U7_A0A151X3U7_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A195E0B7_A0A195E0B7_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A195BN20_A0A195BN20_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A195F2F7_A0A195F2F7_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2AYA9_E2AYA9_CAMFO_104421 and tr_A0A195CQM9_A0A195CQM9_9HYME_456900 are exactly identical! WARNING: Sequences tr_E7FBI4_E7FBI4_DANRE_7955 and tr_H2LMP0_H2LMP0_ORYLA_8090 are exactly identical! WARNING: Sequences tr_E7FBI4_E7FBI4_DANRE_7955 and tr_M3ZUW3_M3ZUW3_XIPMA_8083 are exactly identical! WARNING: Sequences tr_E7FBI4_E7FBI4_DANRE_7955 and tr_A0A087XDA1_A0A087XDA1_POEFO_48698 are exactly identical! WARNING: Sequences tr_E7FBI4_E7FBI4_DANRE_7955 and tr_A0A2I4AXH6_A0A2I4AXH6_9TELE_52670 are exactly identical! WARNING: Sequences tr_F1NSA8_F1NSA8_CHICK_9031 and tr_H0YT91_H0YT91_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NSA8_F1NSA8_CHICK_9031 and tr_U3JD28_U3JD28_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NSA8_F1NSA8_CHICK_9031 and tr_A0A0Q3WU73_A0A0Q3WU73_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NSA8_F1NSA8_CHICK_9031 and tr_A0A218UG16_A0A218UG16_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NSA8_F1NSA8_CHICK_9031 and tr_A0A226MHE5_A0A226MHE5_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and sp_Q99JI6_RAP1B_MOUSE_10090 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_G1PUZ6_G1PUZ6_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_G3GY22_G3GY22_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_G3RXV3_G3RXV3_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and sp_Q5RDM6_RAP1B_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_G1NDE6_G1NDE6_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_R4GC27_R4GC27_ANOCA_28377 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_U3KM96_U3KM96_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and sp_A5A6J7_RAP1B_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_F6PQC9_F6PQC9_ORNAN_9258 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_F7EFD0_F7EFD0_MONDO_13616 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_F6SSK7_F6SSK7_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_W5NSD5_W5NSD5_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and sp_Q62636_RAP1B_RAT_10116 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A286Y518_A0A286Y518_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and sp_P61224_RAP1B_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_F7B9T3_F7B9T3_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_G5BBH0_G5BBH0_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_K7GE48_K7GE48_PELSI_13735 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_G3TH19_G3TH19_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_G3WDE4_G3WDE4_SARHA_9305 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_H0Z8N9_H0Z8N9_TAEGU_59729 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_F7A150_F7A150_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A287APX6_A0A287APX6_PIG_9823 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and sp_P61223_RAP1B_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_U3K698_U3K698_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_U3IY39_U3IY39_ANAPL_8839 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A096MZ72_A0A096MZ72_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A091DPN2_A0A091DPN2_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A0D9SB26_A0A0D9SB26_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A091EQ38_A0A091EQ38_CORBR_85066 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A091JN81_A0A091JN81_EGRGA_188379 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A093Q9R5_A0A093Q9R5_9PASS_328815 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A093JLF1_A0A093JLF1_STRCA_441894 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A091VTV7_A0A091VTV7_OPIHO_30419 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A099ZJZ6_A0A099ZJZ6_TINGU_94827 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A091FHQ1_A0A091FHQ1_9AVES_55661 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A0A0ANH7_A0A0A0ANH7_CHAVO_50402 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A2I0MJZ0_A0A2I0MJZ0_COLLI_8932 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A093GXQ7_A0A093GXQ7_DRYPU_118200 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A091IJ79_A0A091IJ79_CALAN_9244 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A1S3WI60_A0A1S3WI60_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A1S3FMY5_A0A1S3FMY5_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A1U7SSJ7_A0A1U7SSJ7_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A1U7R5R8_A0A1U7R5R8_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A218UCJ0_A0A218UCJ0_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A2K5P3M2_A0A2K5P3M2_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A2K5ZII5_A0A2K5ZII5_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A2R9BXP5_A0A2R9BXP5_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A2U3ZZX4_A0A2U3ZZX4_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A2Y9G074_A0A2Y9G074_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A2Y9NDH8_A0A2Y9NDH8_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A2Y9SIR2_A0A2Y9SIR2_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q5ZHX1_RAP1B_CHICK_9031 and tr_A0A384B5W0_A0A384B5W0_BALAS_310752 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_M3Y0F1_M3Y0F1_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_G1QVA4_G1QVA4_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_G3IBI0_G3IBI0_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A2J8UM33_A0A2J8UM33_PONAB_9601 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_R4G951_R4G951_ANOCA_28377 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_U3KMI4_U3KMI4_RABIT_9986 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A2I3T5X3_A0A2I3T5X3_PANTR_9598 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_W5QED8_W5QED8_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and sp_P62836_RAP1A_RAT_10116 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_I3MSC2_I3MSC2_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_H0XX36_H0XX36_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A286Y641_A0A286Y641_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and sp_P62834_RAP1A_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_F7GH95_F7GH95_MACMU_9544 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_G5BNX5_G5BNX5_HETGA_10181 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_K7F720_K7F720_PELSI_13735 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_G3SL30_G3SL30_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_G3WME1_G3WME1_SARHA_9305 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_F6PNM5_F6PNM5_CALJA_9483 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_F2Z5K3_F2Z5K3_PIG_9823 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_G1LFL5_G1LFL5_AILME_9646 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and sp_P62833_RAP1A_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_L5K2Z3_L5K2Z3_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_M3X4J3_M3X4J3_FELCA_9685 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A0D9S6F7_A0A0D9S6F7_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A1S3WH17_A0A1S3WH17_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A1U8DJ79_A0A1U8DJ79_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A3Q0D272_A0A3Q0D272_MESAU_10036 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A2K5P5D2_A0A2K5P5D2_CERAT_9531 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A2K6BRJ1_A0A2K6BRJ1_MACNE_9545 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A2K5XZR9_A0A2K5XZR9_MANLE_9568 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A2R9C811_A0A2R9C811_PANPA_9597 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A2U4A3P7_A0A2U4A3P7_TURTR_9739 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A2U3W0G3_A0A2U3W0G3_ODORO_9708 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A2Y9RGJ7_A0A2Y9RGJ7_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A2Y9J5B7_A0A2Y9J5B7_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A2Y9P3H1_A0A2Y9P3H1_DELLE_9749 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A2Y9EGB6_A0A2Y9EGB6_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A384D694_A0A384D694_URSMA_29073 are exactly identical! WARNING: Sequences sp_P62835_RAP1A_MOUSE_10090 and tr_A0A383Z318_A0A383Z318_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Z1D5_M3Z1D5_MUSPF_9669 and tr_E2R2K4_E2R2K4_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z1D5_M3Z1D5_MUSPF_9669 and tr_A0A2Y9IPB0_A0A2Y9IPB0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B6HIF1_B6HIF1_PENRW_500485 and tr_A0A1V6Z316_A0A1V6Z316_PENNA_60175 are exactly identical! WARNING: Sequences tr_E3RQ26_E3RQ26_PYRTT_861557 and tr_B2WGT0_B2WGT0_PYRTR_426418 are exactly identical! WARNING: Sequences tr_E3RQ26_E3RQ26_PYRTT_861557 and tr_R0K3L1_R0K3L1_SETT2_671987 are exactly identical! WARNING: Sequences tr_E3RQ26_E3RQ26_PYRTT_861557 and tr_A0A177DEV7_A0A177DEV7_ALTAL_5599 are exactly identical! WARNING: Sequences tr_E3RQ26_E3RQ26_PYRTT_861557 and tr_A0A2W1GU84_A0A2W1GU84_9PLEO_45151 are exactly identical! WARNING: Sequences tr_E3RQ26_E3RQ26_PYRTT_861557 and tr_A0A364N9V7_A0A364N9V7_9PLEO_183478 are exactly identical! WARNING: Sequences tr_A0A2I3H3G8_A0A2I3H3G8_NOMLE_61853 and tr_G3QS57_G3QS57_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H3G8_A0A2I3H3G8_NOMLE_61853 and tr_H2NW87_H2NW87_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H3G8_A0A2I3H3G8_NOMLE_61853 and tr_A0A2I3SGM7_A0A2I3SGM7_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H3G8_A0A2I3H3G8_NOMLE_61853 and sp_Q99578_RIT2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H3G8_A0A2I3H3G8_NOMLE_61853 and tr_A0A2K5M5Z5_A0A2K5M5Z5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3H3G8_A0A2I3H3G8_NOMLE_61853 and tr_A0A2R9AWY7_A0A2R9AWY7_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RNP6_G1RNP6_NOMLE_61853 and tr_G3S3A0_G3S3A0_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RNP6_G1RNP6_NOMLE_61853 and tr_H2N5F8_H2N5F8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RNP6_G1RNP6_NOMLE_61853 and tr_H2Q086_H2Q086_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RNP6_G1RNP6_NOMLE_61853 and sp_Q92963_RIT1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RNP6_G1RNP6_NOMLE_61853 and tr_A0A2I3LC23_A0A2I3LC23_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RNP6_G1RNP6_NOMLE_61853 and tr_A0A0D9S521_A0A0D9S521_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RNP6_G1RNP6_NOMLE_61853 and tr_A0A2K5P692_A0A2K5P692_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RNP6_G1RNP6_NOMLE_61853 and tr_A0A2K5YAS4_A0A2K5YAS4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RNP6_G1RNP6_NOMLE_61853 and tr_A0A2R9CFQ9_A0A2R9CFQ9_PANPA_9597 are exactly identical! WARNING: Sequences tr_J3KHF8_J3KHF8_COCIM_246410 and tr_E9DHG0_E9DHG0_COCPS_443226 are exactly identical! WARNING: Sequences tr_J3KHF8_J3KHF8_COCIM_246410 and tr_A0A0J6XYR0_A0A0J6XYR0_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6Q5U8_B6Q5U8_TALMQ_441960 and tr_B8LSZ3_B8LSZ3_TALSN_441959 are exactly identical! WARNING: Sequences tr_B6Q5U8_B6Q5U8_TALMQ_441960 and tr_A0A093Y0W4_A0A093Y0W4_TALMA_1077442 are exactly identical! WARNING: Sequences tr_A7F871_A7F871_SCLS1_665079 and tr_M7TTJ5_M7TTJ5_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_C0NNY9_C0NNY9_AJECG_447093 and tr_C6HM61_C6HM61_AJECH_544712 are exactly identical! WARNING: Sequences tr_C0NNY9_C0NNY9_AJECG_447093 and tr_F0UMY8_F0UMY8_AJEC8_544711 are exactly identical! WARNING: Sequences tr_Q28WT4_Q28WT4_DROPS_46245 and tr_B4H6A6_B4H6A6_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q2M061_Q2M061_DROPS_46245 and tr_B4N5E9_B4N5E9_DROWI_7260 are exactly identical! WARNING: Sequences tr_Q2M061_Q2M061_DROPS_46245 and tr_A0A1W4W721_A0A1W4W721_DROFC_30025 are exactly identical! WARNING: Sequences tr_B8NH14_B8NH14_ASPFN_332952 and tr_Q2UE83_Q2UE83_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NH14_B8NH14_ASPFN_332952 and tr_A0A1S9DZX2_A0A1S9DZX2_ASPOZ_5062 are exactly identical! WARNING: Sequences sp_Q18246_RAP1_CAEEL_6239 and tr_G0PMA1_G0PMA1_CAEBE_135651 are exactly identical! WARNING: Sequences sp_Q18246_RAP1_CAEEL_6239 and tr_E3N5N3_E3N5N3_CAERE_31234 are exactly identical! WARNING: Sequences sp_Q18246_RAP1_CAEEL_6239 and tr_A8Y0M9_A8Y0M9_CAEBR_6238 are exactly identical! WARNING: Sequences sp_Q18246_RAP1_CAEEL_6239 and tr_A0A1I7U615_A0A1I7U615_9PELO_1561998 are exactly identical! WARNING: Sequences sp_Q18246_RAP1_CAEEL_6239 and tr_A0A261BYR9_A0A261BYR9_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A0A179UDF6_A0A179UDF6_BLAGS_559298 and tr_C5GJD4_C5GJD4_AJEDR_559297 are exactly identical! WARNING: Sequences tr_W5P480_W5P480_SHEEP_9940 and tr_A0A2U4B6Y3_A0A2U4B6Y3_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5P480_W5P480_SHEEP_9940 and tr_A0A2Y9LZ46_A0A2Y9LZ46_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5P480_W5P480_SHEEP_9940 and tr_A0A2Y9EWM1_A0A2Y9EWM1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_W7M2A1_W7M2A1_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_A0A0C4DHU6_A0A0C4DHU6_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_S0DU73_S0DU73_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_N4U6L3_N4U6L3_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_X0CND5_X0CND5_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_Q874F1_Q874F1_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_A0A2H3HUQ0_A0A2H3HUQ0_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_A0A2K0W080_A0A2K0W080_GIBNY_42673 are exactly identical! WARNING: Sequences tr_F9FE60_F9FE60_FUSOF_660025 and tr_A0A365N836_A0A365N836_GIBIN_948311 are exactly identical! WARNING: Sequences tr_E9QX28_E9QX28_ASPFU_330879 and tr_A0A0S7E363_A0A0S7E363_9EURO_293939 are exactly identical! WARNING: Sequences tr_E9QX28_E9QX28_ASPFU_330879 and tr_A0A2I1CIF2_A0A2I1CIF2_9EURO_1392255 are exactly identical! WARNING: Sequences tr_E4URM7_E4URM7_ARTGP_535722 and tr_F2SR54_F2SR54_TRIRC_559305 are exactly identical! WARNING: Sequences tr_E4URM7_E4URM7_ARTGP_535722 and tr_F2PK96_F2PK96_TRIEC_559882 are exactly identical! WARNING: Sequences tr_A0A087ZZ92_A0A087ZZ92_APIME_7460 and tr_A0A0L7R368_A0A0L7R368_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A087ZZ92_A0A087ZZ92_APIME_7460 and tr_A0A2A3EB23_A0A2A3EB23_APICC_94128 are exactly identical! WARNING: Sequences tr_I3K031_I3K031_ORENI_8128 and tr_A0A3B5KAJ6_A0A3B5KAJ6_TAKRU_31033 are exactly identical! WARNING: Sequences tr_I3K031_I3K031_ORENI_8128 and tr_W5KP26_W5KP26_ASTMX_7994 are exactly identical! WARNING: Sequences tr_I3K031_I3K031_ORENI_8128 and tr_C1BIF2_C1BIF2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_I3K031_I3K031_ORENI_8128 and tr_W5UBA3_W5UBA3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_I3K031_I3K031_ORENI_8128 and tr_A0A2U9BFL6_A0A2U9BFL6_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2SV97_H2SV97_TAKRU_31033 and tr_H3D4L1_H3D4L1_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A0C4DEZ5_A0A0C4DEZ5_PUCT1_630390 and tr_E3KSN4_E3KSN4_PUCGT_418459 are exactly identical! WARNING: Sequences tr_G9P1A6_G9P1A6_HYPAI_452589 and tr_A0A0W7VLG7_A0A0W7VLG7_9HYPO_398673 are exactly identical! WARNING: Sequences tr_G9P1A6_G9P1A6_HYPAI_452589 and tr_A0A2T3ZLB0_A0A2T3ZLB0_9HYPO_1042311 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_G7XP39_G7XP39_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_G3XRA0_G3XRA0_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_A0A117DUH2_A0A117DUH2_ASPNG_5061 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_A0A146FP30_A0A146FP30_9EURO_1069201 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_A0A1L9ND12_A0A1L9ND12_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_A0A317WJU8_A0A317WJU8_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A2Q7X9_A2Q7X9_ASPNC_425011 and tr_A0A319AZQ6_A0A319AZQ6_9EURO_1450533 are exactly identical! WARNING: Sequences tr_E5S1E1_E5S1E1_TRISP_6334 and tr_A0A0V0X9Y6_A0A0V0X9Y6_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5S1E1_E5S1E1_TRISP_6334 and tr_A0A0V1KU90_A0A0V1KU90_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5S1E1_E5S1E1_TRISP_6334 and tr_A0A0V0XKR0_A0A0V0XKR0_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5S1E1_E5S1E1_TRISP_6334 and tr_A0A0V1MST6_A0A0V1MST6_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5S1E1_E5S1E1_TRISP_6334 and tr_A0A0V1H155_A0A0V1H155_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5S1E1_E5S1E1_TRISP_6334 and tr_A0A0V0TIX2_A0A0V0TIX2_9BILA_144512 are exactly identical! WARNING: Sequences tr_G9MSN8_G9MSN8_HYPVG_413071 and tr_A0A0F9WW85_A0A0F9WW85_TRIHA_5544 are exactly identical! WARNING: Sequences tr_G9MSN8_G9MSN8_HYPVG_413071 and tr_A0A2T4AV23_A0A2T4AV23_TRIHA_983964 are exactly identical! WARNING: Sequences tr_F4NYQ1_F4NYQ1_BATDJ_684364 and tr_A0A177WJC8_A0A177WJC8_BATDE_403673 are exactly identical! WARNING: Sequences tr_F6ZE26_F6ZE26_XENTR_8364 and tr_Q6J1M0_Q6J1M0_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q640R7_RAP1B_XENTR_8364 and tr_A0A1L8GUG3_A0A1L8GUG3_XENLA_8355 are exactly identical! WARNING: Sequences tr_E3QJJ4_E3QJJ4_COLGM_645133 and tr_N4VQQ5_N4VQQ5_COLOR_1213857 are exactly identical! WARNING: Sequences tr_E3QJJ4_E3QJJ4_COLGM_645133 and tr_A0A066XT04_A0A066XT04_COLSU_1173701 are exactly identical! WARNING: Sequences tr_E3QJJ4_E3QJJ4_COLGM_645133 and tr_A0A161WP53_A0A161WP53_9PEZI_708197 are exactly identical! WARNING: Sequences tr_B4LDE8_B4LDE8_DROVI_7244 and tr_B4L9N8_B4L9N8_DROMO_7230 are exactly identical! WARNING: Sequences tr_B3RUQ0_B3RUQ0_TRIAD_10228 and tr_A0A369SA74_A0A369SA74_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3S851_B3S851_TRIAD_10228 and tr_A0A369RR77_A0A369RR77_9METZ_287889 are exactly identical! WARNING: Sequences tr_G7PWP4_G7PWP4_MACFA_9541 and tr_A0A2I3MAC2_A0A2I3MAC2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7PWP4_G7PWP4_MACFA_9541 and tr_A0A2K6CZB0_A0A2K6CZB0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7PWP4_G7PWP4_MACFA_9541 and tr_A0A2K5ZJ42_A0A2K5ZJ42_MANLE_9568 are exactly identical! WARNING: Sequences tr_L8FSB6_L8FSB6_PSED2_658429 and tr_A0A1B8F3D8_A0A1B8F3D8_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_L2FDN8_L2FDN8_COLFN_1213859 and tr_T0MEA4_T0MEA4_COLGC_1237896 are exactly identical! WARNING: Sequences tr_L2FDN8_L2FDN8_COLFN_1213859 and tr_A0A010QSB8_A0A010QSB8_9PEZI_1445577 are exactly identical! WARNING: Sequences tr_L2FDN8_L2FDN8_COLFN_1213859 and tr_A0A135S4X3_A0A135S4X3_9PEZI_1209931 are exactly identical! WARNING: Sequences tr_L2FDN8_L2FDN8_COLFN_1213859 and tr_A0A1G4AUM5_A0A1G4AUM5_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_M9MBP8_M9MBP8_PSEA3_1151754 and tr_A0A0F7RSB6_A0A0F7RSB6_9BASI_49012 are exactly identical! WARNING: Sequences tr_S2J3G9_S2J3G9_MUCC1_1220926 and tr_A0A0C9LVM7_A0A0C9LVM7_9FUNG_91626 are exactly identical! WARNING: Sequences tr_S2J3G9_S2J3G9_MUCC1_1220926 and tr_A0A168L6J4_A0A168L6J4_MUCCL_747725 are exactly identical! WARNING: Sequences tr_S2JXA0_S2JXA0_MUCC1_1220926 and tr_A0A0C9LTA8_A0A0C9LTA8_9FUNG_91626 are exactly identical! WARNING: Sequences tr_S2JXA0_S2JXA0_MUCC1_1220926 and tr_A0A168KRX1_A0A168KRX1_MUCCL_747725 are exactly identical! WARNING: Sequences tr_S2KBC5_S2KBC5_MUCC1_1220926 and tr_A0A168LE37_A0A168LE37_MUCCL_747725 are exactly identical! WARNING: Sequences tr_M2SS60_M2SS60_COCSN_665912 and tr_M2UED0_M2UED0_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2SS60_M2SS60_COCSN_665912 and tr_W6XNP0_W6XNP0_COCCA_930089 are exactly identical! WARNING: Sequences tr_M2SS60_M2SS60_COCSN_665912 and tr_W6ZAI0_W6ZAI0_COCMI_930090 are exactly identical! WARNING: Sequences tr_V2X2D7_V2X2D7_MONRO_1381753 and tr_A0A0W0FJ59_A0A0W0FJ59_9AGAR_221103 are exactly identical! WARNING: Sequences tr_A0A015N6D6_A0A015N6D6_9GLOM_1432141 and tr_A0A2I1GE29_A0A2I1GE29_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A044TKE1_A0A044TKE1_ONCVO_6282 and tr_A0A183H200_A0A183H200_9BILA_387005 are exactly identical! WARNING: Sequences tr_A0A044TKE1_A0A044TKE1_ONCVO_6282 and tr_A0A182E7S5_A0A182E7S5_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0F8WD52_A0A0F8WD52_9EURO_308745 and tr_A0A2T5MA29_A0A2T5MA29_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0K0FJ42_A0A0K0FJ42_STRVS_75913 and tr_A0A0N5C684_A0A0N5C684_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0A1NWE6_A0A0A1NWE6_9FUNG_58291 and tr_A0A2G4T7A7_A0A2G4T7A7_9FUNG_1340429 are exactly identical! WARNING: Sequences tr_A0A0A1NWE6_A0A0A1NWE6_9FUNG_58291 and tr_A0A367JTG8_A0A367JTG8_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A151MWI1_A0A151MWI1_ALLMI_8496 and tr_A0A1U7RYL4_A0A1U7RYL4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0W8D2T0_A0A0W8D2T0_PHYNI_4790 and tr_W2MSC6_W2MSC6_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A194R663_A0A194R663_PAPMA_76193 and tr_A0A194QFT7_A0A194QFT7_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A0G4PIF1_A0A0G4PIF1_PENCA_1429867 and tr_A0A1V6NHH5_A0A1V6NHH5_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A0G4PIF1_A0A0G4PIF1_PENCA_1429867 and tr_A0A1V6QME9_A0A1V6QME9_9EURO_60172 are exactly identical! WARNING: Sequences tr_I1RZD9_I1RZD9_GIBZE_229533 and tr_A0A1B8AFQ1_A0A1B8AFQ1_FUSPO_36050 are exactly identical! WARNING: Sequences tr_A0A164TMB7_A0A164TMB7_9HOMO_1314777 and tr_A0A166GYN8_A0A166GYN8_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_B5X2X6_B5X2X6_SALSA_8030 and tr_A0A060XUW2_A0A060XUW2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1B7NW40_A0A1B7NW40_9EURO_1658172 and tr_A0A1J9PJV2_A0A1J9PJV2_9EURO_1447872 are exactly identical! WARNING: Sequences tr_A0A1F5LZR5_A0A1F5LZR5_9EURO_1835702 and tr_A0A1V6PWP2_A0A1V6PWP2_9EURO_416450 are exactly identical! WARNING: Sequences tr_A0A1L9WR94_A0A1L9WR94_ASPAC_690307 and tr_A0A319CHM7_A0A319CHM7_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9WR94_A0A1L9WR94_ASPAC_690307 and tr_A0A2V5I2J4_A0A2V5I2J4_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WR94_A0A1L9WR94_ASPAC_690307 and tr_A0A2V5GP62_A0A2V5GP62_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1R3RJD6_A0A1R3RJD6_ASPC5_602072 and tr_A0A317XEI8_A0A317XEI8_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A1R3RJD6_A0A1R3RJD6_ASPC5_602072 and tr_A0A319DVU8_A0A319DVU8_9EURO_1448318 are exactly identical! WARNING: Sequences tr_A0A1V8UDQ2_A0A1V8UDQ2_9PEZI_1974281 and tr_A0A1V8SDV1_A0A1V8SDV1_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1V8UDQ2_A0A1V8UDQ2_9PEZI_1974281 and tr_A0A1V8TEG1_A0A1V8TEG1_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A060WX65_A0A060WX65_ONCMY_8022 and tr_A0A2D0QZP7_A0A2D0QZP7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2H3EME9_A0A2H3EME9_ARMGA_47427 and tr_A0A2H3C2K0_A0A2H3C2K0_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2B7X9G9_A0A2B7X9G9_9EURO_2060905 and tr_A0A1J9Q4Z6_A0A1J9Q4Z6_9EURO_1658174 are exactly identical! WARNING: Sequences tr_A0A2I1FWJ1_A0A2I1FWJ1_9GLOM_588596 and tr_A0A2Z6RG99_A0A2Z6RG99_9GLOM_94130 are exactly identical! WARNING: Sequences tr_A0A2G4SWH8_A0A2G4SWH8_9FUNG_1340429 and tr_A0A367K1Z9_A0A367K1Z9_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2U3WC35_A0A2U3WC35_ODORO_9708 and tr_A0A384BJM5_A0A384BJM5_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A367XMK3_A0A367XMK3_9ASCO_5486 and tr_A0A367YNE8_A0A367YNE8_9ASCO_5486 are exactly identical! WARNING: Duplicate sequences found: 255 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q92963/4_raxmlng_ancestral/Q92963.raxml.reduced.phy Alignment comprises 1 partitions and 219 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 219 Gaps: 13.92 % Invariant sites: 3.20 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q92963/4_raxmlng_ancestral/Q92963.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q92963/3_mltree/Q92963.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 55 / 4400 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -49801.633719 [00:00:00 -49801.633719] Initial branch length optimization [00:00:01 -44847.606671] Model parameter optimization (eps = 0.100000) [00:00:38] Tree #1, final logLikelihood: -44644.141239 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.327395,0.248539) (0.277588,0.342792) (0.188240,0.957435) (0.206776,3.110832) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q92963/4_raxmlng_ancestral/Q92963.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q92963/4_raxmlng_ancestral/Q92963.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q92963/4_raxmlng_ancestral/Q92963.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q92963/4_raxmlng_ancestral/Q92963.raxml.log Analysis started: 02-Jun-2021 18:37:58 / finished: 02-Jun-2021 18:38:38 Elapsed time: 40.522 seconds Consumed energy: 1.972 Wh