RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 05-Jul-2021 01:33:37 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q92766/2_msa/Q92766_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q92766/3_mltree/Q92766 --seed 2 --threads 6 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q92766/2_msa/Q92766_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 378 sites

WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_M3Y4U4_M3Y4U4_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_G3QFH5_G3QFH5_GORGO_9595 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_H2NR83_H2NR83_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_G1SWA5_G1SWA5_RABIT_9986 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_E2RJR9_E2RJR9_CANLF_9615 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_H2QBB9_H2QBB9_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_F6V9V7_F6V9V7_HORSE_9796 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and sp_Q9R1D1_CTCF_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_I3MZ84_I3MZ84_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_H0X5R9_H0X5R9_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and sp_P49711_CTCF_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_G7NQ61_G7NQ61_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_G5E6X2_G5E6X2_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_F7IC32_F7IC32_CALJA_9483 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_I3LDG5_I3LDG5_PIG_9823 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_G1MGF9_G1MGF9_AILME_9646 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_G8F4K8_G8F4K8_MACFA_9541 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_Q08DH9_Q08DH9_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_M3W0F6_M3W0F6_FELCA_9685 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A096NZP9_A0A096NZP9_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A0D9QV86_A0A0D9QV86_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A3Q0EDC7_A0A3Q0EDC7_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A1U8CCQ0_A0A1U8CCQ0_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A2K5NS86_A0A2K5NS86_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A2K6CQN4_A0A2K6CQN4_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A2K6A1T9_A0A2K6A1T9_MANLE_9568 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A2R9CRW2_A0A2R9CRW2_PANPA_9597 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A2U4BDE5_A0A2U4BDE5_TURTR_9739 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A2U4BDH5_A0A2U4BDH5_TURTR_9739 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A2U3ZQP0_A0A2U3ZQP0_ODORO_9708 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A2Y9K1L7_A0A2Y9K1L7_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A2Y9NYV3_A0A2Y9NYV3_DELLE_9749 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A2Y9SXZ5_A0A2Y9SXZ5_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A384D1P4_A0A384D1P4_URSMA_29073 are exactly identical!
WARNING: Sequences sp_Q61164_CTCF_MOUSE_10090 and tr_A0A384BEM0_A0A384BEM0_BALAS_310752 are exactly identical!
WARNING: Sequences tr_G1P490_G1P490_MYOLU_59463 and tr_L5KSR1_L5KSR1_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_A0A2I2Y2H9_A0A2I2Y2H9_GORGO_9595 and tr_A0A2J8S1I3_A0A2J8S1I3_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A2I2Y2H9_A0A2I2Y2H9_GORGO_9595 and sp_Q9BUY5_ZN426_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QPH7_G3QPH7_GORGO_9595 and tr_A0A2I3TAS7_A0A2I3TAS7_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QPH7_G3QPH7_GORGO_9595 and tr_A0A2R9BI52_A0A2R9BI52_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3RFD0_G3RFD0_GORGO_9595 and tr_H2QFF8_H2QFF8_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RFD0_G3RFD0_GORGO_9595 and sp_Q8TA94_ZN563_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H9G4Q0_H9G4Q0_ANOCA_28377 and tr_K7F6Y6_K7F6Y6_PELSI_13735 are exactly identical!
WARNING: Sequences tr_A0A2I3STQ8_A0A2I3STQ8_PANTR_9598 and tr_A0A2R8ZUA2_A0A2R8ZUA2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2QBR3_H2QBR3_PANTR_9598 and tr_A0A2R8ZY83_A0A2R8ZY83_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2QKN0_H2QKN0_PANTR_9598 and tr_A0A2R9AR17_A0A2R9AR17_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A158NHM0_A0A158NHM0_ATTCE_12957 and tr_A0A151I603_A0A151I603_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158P2W0_A0A158P2W0_ATTCE_12957 and tr_A0A151XH71_A0A151XH71_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A1D5QXZ3_A0A1D5QXZ3_MACMU_9544 and tr_G7PZ52_G7PZ52_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A1D5QXZ3_A0A1D5QXZ3_MACMU_9544 and tr_A0A2K6D4T1_A0A2K6D4T1_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6WQ38_F6WQ38_MACMU_9544 and tr_G7PRN1_G7PRN1_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6WQ38_F6WQ38_MACMU_9544 and tr_A0A096P0U6_A0A096P0U6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6WQ38_F6WQ38_MACMU_9544 and tr_A0A2K6DYU0_A0A2K6DYU0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7A732_F7A732_MACMU_9544 and tr_A0A2K6E112_A0A2K6E112_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7A7M4_F7A7M4_MACMU_9544 and tr_G7PZ49_G7PZ49_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7A7M4_F7A7M4_MACMU_9544 and tr_A0A2K6DUY9_A0A2K6DUY9_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7A7M4_F7A7M4_MACMU_9544 and tr_A0A2K5XT92_A0A2K5XT92_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7B7N6_F7B7N6_MACMU_9544 and tr_G7P4C9_G7P4C9_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7B7N6_F7B7N6_MACMU_9544 and tr_A0A096NKR1_A0A096NKR1_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7B7N6_F7B7N6_MACMU_9544 and tr_A0A0D9R4V2_A0A0D9R4V2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F7B7N6_F7B7N6_MACMU_9544 and tr_A0A2K5NXB8_A0A2K5NXB8_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7B7N6_F7B7N6_MACMU_9544 and tr_A0A2K6D313_A0A2K6D313_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7B7N6_F7B7N6_MACMU_9544 and tr_A0A2K6A0K0_A0A2K6A0K0_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7CRQ6_F7CRQ6_MACMU_9544 and tr_G7PGT4_G7PGT4_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7H8Y3_F7H8Y3_MACMU_9544 and tr_G7PZ51_G7PZ51_MACFA_9541 are exactly identical!
WARNING: Sequences tr_H0YVQ9_H0YVQ9_TAEGU_59729 and tr_A0A218UX28_A0A218UX28_9PASE_299123 are exactly identical!
WARNING: Sequences tr_G7PFS9_G7PFS9_MACFA_9541 and tr_A0A2K6DG87_A0A2K6DG87_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G7PFS9_G7PFS9_MACFA_9541 and tr_A0A2K5Y9Z0_A0A2K5Y9Z0_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A044TQV9_A0A044TQV9_ONCVO_6282 and tr_A0A182E4H2_A0A182E4H2_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A0A0MU12_A0A0A0MU12_PAPAN_9555 and tr_A0A2K5KTK7_A0A2K5KTK7_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A0A0MVB6_A0A0A0MVB6_PAPAN_9555 and tr_A0A2K6D383_A0A2K6D383_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A0A0MWA4_A0A0A0MWA4_PAPAN_9555 and tr_A0A2K5NI84_A0A2K5NI84_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A151NJM4_A0A151NJM4_ALLMI_8496 and tr_A0A1U7S702_A0A1U7S702_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A2I0MXR5_A0A2I0MXR5_COLLI_8932 and tr_A0A1V4JY76_A0A1V4JY76_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A226MFW8_A0A226MFW8_CALSU_9009 and tr_A0A226PYI9_A0A226PYI9_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2D0RZ52_A0A2D0RZ52_ICTPU_7998 and tr_A0A2D0S023_A0A2D0S023_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2K5LPU1_A0A2K5LPU1_CERAT_9531 and tr_A0A2K6A833_A0A2K6A833_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2K5MHQ9_A0A2K5MHQ9_CERAT_9531 and tr_A0A2K5ZG38_A0A2K5ZG38_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2U3V5W8_A0A2U3V5W8_TURTR_9739 and tr_A0A2U4CH49_A0A2U4CH49_TURTR_9739 are exactly identical!
WARNING: Sequences tr_A0A2Y9EGH1_A0A2Y9EGH1_PHYCD_9755 and tr_A0A384B4Y9_A0A384B4Y9_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 80

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q92766/3_mltree/Q92766.raxml.reduced.phy

Alignment comprises 1 partitions and 378 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 378 / 378
Gaps: 14.34 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q92766/3_mltree/Q92766.raxml.rba

Parallelization scheme autoconfig: 3 worker(s) x 2 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 189 / 15120
[00:00:00] Data distribution: max. searches per worker: 7

Starting ML tree search with 20 distinct starting trees

[00:00:00 -648258.348900] Initial branch length optimization
[00:00:04 -562171.680768] Model parameter optimization (eps = 10.000000)
[00:00:50 -561430.406085] AUTODETECT spr round 1 (radius: 5)
[00:03:40 -432166.576880] AUTODETECT spr round 2 (radius: 10)
[00:06:53 -318157.563621] AUTODETECT spr round 3 (radius: 15)
[00:10:30 -266964.226172] AUTODETECT spr round 4 (radius: 20)
[00:14:32 -250285.571901] AUTODETECT spr round 5 (radius: 25)
[00:19:43 -247129.324950] SPR radius for FAST iterations: 25 (autodetect)
[00:19:43 -247129.324950] Model parameter optimization (eps = 3.000000)
[00:20:08 -247021.073398] FAST spr round 1 (radius: 25)
[00:24:37 -224791.696436] FAST spr round 2 (radius: 25)
[00:28:03 -223519.119026] FAST spr round 3 (radius: 25)
[00:30:57 -223357.181496] FAST spr round 4 (radius: 25)
[00:33:35 -223324.949796] FAST spr round 5 (radius: 25)
[00:35:56 -223313.467205] FAST spr round 6 (radius: 25)
[00:38:04 -223311.456837] FAST spr round 7 (radius: 25)
[00:40:05 -223311.456696] Model parameter optimization (eps = 1.000000)
[00:40:21 -223304.485841] SLOW spr round 1 (radius: 5)
[00:43:10 -223230.036185] SLOW spr round 2 (radius: 5)
[00:45:57 -223215.952130] SLOW spr round 3 (radius: 5)
[00:48:39 -223214.055620] SLOW spr round 4 (radius: 5)
[00:51:20 -223213.400428] SLOW spr round 5 (radius: 5)
[00:53:59 -223213.400249] SLOW spr round 6 (radius: 10)
[00:56:45 -223210.528005] SLOW spr round 7 (radius: 5)
[00:59:55 -223207.092634] SLOW spr round 8 (radius: 5)
[01:02:46 -223207.092608] SLOW spr round 9 (radius: 10)
[01:05:39 -223204.774174] SLOW spr round 10 (radius: 5)
[01:08:43 -223204.701135] SLOW spr round 11 (radius: 10)
[01:11:57 -223204.700749] SLOW spr round 12 (radius: 15)
[01:16:56 -223204.700745] SLOW spr round 13 (radius: 20)
[01:26:16 -223204.700745] SLOW spr round 14 (radius: 25)
[01:37:43 -223181.833523] SLOW spr round 15 (radius: 5)
[01:41:41 -223165.467771] SLOW spr round 16 (radius: 5)
[01:42:02] [worker #2] ML tree search #3, logLikelihood: -223099.191656
[01:45:08 -223160.316573] SLOW spr round 17 (radius: 5)
[01:48:15 -223160.315922] SLOW spr round 18 (radius: 10)
[01:51:25 -223158.583477] SLOW spr round 19 (radius: 5)
[01:54:53 -223158.582351] SLOW spr round 20 (radius: 10)
[01:58:23 -223157.869935] SLOW spr round 21 (radius: 5)
[02:01:58 -223146.980345] SLOW spr round 22 (radius: 5)
[02:05:10 -223146.466025] SLOW spr round 23 (radius: 5)
[02:08:18 -223143.211023] SLOW spr round 24 (radius: 5)
[02:11:23 -223138.589426] SLOW spr round 25 (radius: 5)
[02:14:23 -223138.588538] SLOW spr round 26 (radius: 10)
[02:17:29 -223133.381843] SLOW spr round 27 (radius: 5)
[02:21:00 -223132.053160] SLOW spr round 28 (radius: 5)
[02:24:11 -223132.053066] SLOW spr round 29 (radius: 10)
[02:27:22 -223132.053064] SLOW spr round 30 (radius: 15)
[02:32:53 -223129.566836] SLOW spr round 31 (radius: 5)
[02:36:27 -223129.566620] SLOW spr round 32 (radius: 10)
[02:40:05 -223129.566612] SLOW spr round 33 (radius: 15)
[02:45:19 -223129.566610] SLOW spr round 34 (radius: 20)
[02:54:29 -223128.086037] SLOW spr round 35 (radius: 5)
[02:58:10 -223123.088899] SLOW spr round 36 (radius: 5)
[03:01:27 -223121.961121] SLOW spr round 37 (radius: 5)
[03:04:31 -223121.960972] SLOW spr round 38 (radius: 10)
[03:07:38 -223121.960971] SLOW spr round 39 (radius: 15)
[03:09:23] [worker #1] ML tree search #2, logLikelihood: -223134.162743
[03:13:07 -223121.960970] SLOW spr round 40 (radius: 20)
[03:15:41] [worker #2] ML tree search #6, logLikelihood: -223202.495182
[03:22:02 -223121.960970] SLOW spr round 41 (radius: 25)
[03:33:17 -223121.960970] Model parameter optimization (eps = 0.100000)

[03:33:24] [worker #0] ML tree search #1, logLikelihood: -223121.917056

[03:33:24 -645854.936872] Initial branch length optimization
[03:33:33 -561037.005867] Model parameter optimization (eps = 10.000000)
[03:34:25 -560204.426339] AUTODETECT spr round 1 (radius: 5)
[03:37:36 -434133.511924] AUTODETECT spr round 2 (radius: 10)
[03:41:08 -325126.017970] AUTODETECT spr round 3 (radius: 15)
[03:45:01 -275187.405731] AUTODETECT spr round 4 (radius: 20)
[03:49:23 -254562.837210] AUTODETECT spr round 5 (radius: 25)
[03:54:45 -250992.163178] SPR radius for FAST iterations: 25 (autodetect)
[03:54:45 -250992.163178] Model parameter optimization (eps = 3.000000)
[03:55:12 -250879.981399] FAST spr round 1 (radius: 25)
[04:00:46 -225152.412072] FAST spr round 2 (radius: 25)
[04:04:37 -223935.092670] FAST spr round 3 (radius: 25)
[04:07:50 -223523.497398] FAST spr round 4 (radius: 25)
[04:10:45 -223455.991025] FAST spr round 5 (radius: 25)
[04:13:24 -223440.625405] FAST spr round 6 (radius: 25)
[04:15:45 -223440.625319] Model parameter optimization (eps = 1.000000)
[04:15:59 -223438.234001] SLOW spr round 1 (radius: 5)
[04:19:17 -223377.005614] SLOW spr round 2 (radius: 5)
[04:22:28 -223371.723928] SLOW spr round 3 (radius: 5)
[04:25:35 -223365.778030] SLOW spr round 4 (radius: 5)
[04:28:36 -223364.103570] SLOW spr round 5 (radius: 5)
[04:31:35 -223364.103444] SLOW spr round 6 (radius: 10)
[04:34:39 -223364.103443] SLOW spr round 7 (radius: 15)
[04:40:20 -223364.103443] SLOW spr round 8 (radius: 20)
[04:48:54 -223360.700016] SLOW spr round 9 (radius: 5)
[04:52:35 -223356.899531] SLOW spr round 10 (radius: 5)
[04:55:54 -223352.917636] SLOW spr round 11 (radius: 5)
[04:59:02 -223349.935950] SLOW spr round 12 (radius: 5)
[05:02:04 -223348.561667] SLOW spr round 13 (radius: 5)
[05:05:02 -223348.561069] SLOW spr round 14 (radius: 10)
[05:08:05 -223348.561057] SLOW spr round 15 (radius: 15)
[05:13:51 -223344.932026] SLOW spr round 16 (radius: 5)
[05:17:24 -223343.096559] SLOW spr round 17 (radius: 5)
[05:20:36 -223343.096386] SLOW spr round 18 (radius: 10)
[05:23:49 -223343.096383] SLOW spr round 19 (radius: 15)
[05:29:13 -223343.096383] SLOW spr round 20 (radius: 20)
[05:29:25] [worker #1] ML tree search #5, logLikelihood: -223344.027253
[05:37:16] [worker #2] ML tree search #9, logLikelihood: -223115.558240
[05:37:51 -223343.096383] SLOW spr round 21 (radius: 25)
[05:48:42 -223313.777963] SLOW spr round 22 (radius: 5)
[05:52:36 -223214.260765] SLOW spr round 23 (radius: 5)
[05:55:34 -223213.773915] SLOW spr round 24 (radius: 5)
[05:58:03 -223213.772936] SLOW spr round 25 (radius: 10)
[06:00:35 -223213.772900] SLOW spr round 26 (radius: 15)
[06:05:07 -223213.772898] SLOW spr round 27 (radius: 20)
[06:12:08 -223213.772898] SLOW spr round 28 (radius: 25)
[06:20:55 -223213.772898] Model parameter optimization (eps = 0.100000)

[06:21:06] [worker #0] ML tree search #4, logLikelihood: -223213.478043

[06:21:06 -652868.240309] Initial branch length optimization
[06:21:09 -568283.799992] Model parameter optimization (eps = 10.000000)
[06:21:53 -567464.324732] AUTODETECT spr round 1 (radius: 5)
[06:24:26 -426327.775075] AUTODETECT spr round 2 (radius: 10)
[06:27:18 -310895.550629] AUTODETECT spr round 3 (radius: 15)
[06:30:39 -265841.301209] AUTODETECT spr round 4 (radius: 20)
[06:34:19 -248980.520939] AUTODETECT spr round 5 (radius: 25)
[06:38:34 -243524.936698] SPR radius for FAST iterations: 25 (autodetect)
[06:38:34 -243524.936698] Model parameter optimization (eps = 3.000000)
[06:38:59 -243415.699586] FAST spr round 1 (radius: 25)
[06:42:49 -225294.671683] FAST spr round 2 (radius: 25)
[06:45:54 -224077.451005] FAST spr round 3 (radius: 25)
[06:48:26 -223925.954954] FAST spr round 4 (radius: 25)
[06:50:51 -223901.216653] FAST spr round 5 (radius: 25)
[06:52:58 -223898.968442] FAST spr round 6 (radius: 25)
[06:54:58 -223896.379422] FAST spr round 7 (radius: 25)
[06:56:54 -223896.379344] Model parameter optimization (eps = 1.000000)
[06:57:04 -223896.049567] SLOW spr round 1 (radius: 5)
[06:59:45 -223833.589426] SLOW spr round 2 (radius: 5)
[07:02:23 -223819.760643] SLOW spr round 3 (radius: 5)
[07:04:51 -223819.759198] SLOW spr round 4 (radius: 10)
[07:07:24 -223816.627540] SLOW spr round 5 (radius: 5)
[07:09:50] [worker #2] ML tree search #12, logLikelihood: -223257.367400
[07:10:20 -223814.440939] SLOW spr round 6 (radius: 5)
[07:12:57 -223814.440560] SLOW spr round 7 (radius: 10)
[07:15:32 -223814.440540] SLOW spr round 8 (radius: 15)
[07:19:54 -223811.654020] SLOW spr round 9 (radius: 5)
[07:22:49 -223811.653942] SLOW spr round 10 (radius: 10)
[07:25:51 -223811.653940] SLOW spr round 11 (radius: 15)
[07:29:56 -223811.653940] SLOW spr round 12 (radius: 20)
[07:36:14 -223775.136661] SLOW spr round 13 (radius: 5)
[07:37:51] [worker #1] ML tree search #8, logLikelihood: -223356.990034
[07:39:15 -223751.618495] SLOW spr round 14 (radius: 5)
[07:42:04 -223747.484963] SLOW spr round 15 (radius: 5)
[07:44:36 -223747.440451] SLOW spr round 16 (radius: 10)
[07:47:09 -223747.440416] SLOW spr round 17 (radius: 15)
[07:51:28 -223746.778699] SLOW spr round 18 (radius: 5)
[07:54:20 -223746.778475] SLOW spr round 19 (radius: 10)
[07:57:17 -223746.309088] SLOW spr round 20 (radius: 5)
[08:00:03 -223745.923670] SLOW spr round 21 (radius: 5)
[08:02:37 -223745.912196] SLOW spr round 22 (radius: 10)
[08:05:10 -223745.911860] SLOW spr round 23 (radius: 15)
[08:09:26 -223745.911851] SLOW spr round 24 (radius: 20)
[08:15:39 -223745.911851] SLOW spr round 25 (radius: 25)
[08:22:48 -223745.911851] Model parameter optimization (eps = 0.100000)

[08:22:59] [worker #0] ML tree search #7, logLikelihood: -223745.819067

[08:22:59 -652339.435499] Initial branch length optimization
[08:23:03 -567876.790997] Model parameter optimization (eps = 10.000000)
[08:23:39 -566977.840428] AUTODETECT spr round 1 (radius: 5)
[08:26:13 -414770.789535] AUTODETECT spr round 2 (radius: 10)
[08:29:03 -312315.335111] AUTODETECT spr round 3 (radius: 15)
[08:32:27 -265047.425597] AUTODETECT spr round 4 (radius: 20)
[08:36:14 -253467.412551] AUTODETECT spr round 5 (radius: 25)
[08:41:59 -246185.737619] SPR radius for FAST iterations: 25 (autodetect)
[08:41:59 -246185.737619] Model parameter optimization (eps = 3.000000)
[08:42:23 -246080.089057] FAST spr round 1 (radius: 25)
[08:46:22 -224707.303599] FAST spr round 2 (radius: 25)
[08:49:28 -223447.382013] FAST spr round 3 (radius: 25)
[08:51:56 -223313.905060] FAST spr round 4 (radius: 25)
[08:53:01] [worker #1] ML tree search #11, logLikelihood: -223325.374239
[08:54:12 -223292.381000] FAST spr round 5 (radius: 25)
[08:56:16 -223280.656478] FAST spr round 6 (radius: 25)
[08:58:12 -223277.844214] FAST spr round 7 (radius: 25)
[09:00:06 -223275.207740] FAST spr round 8 (radius: 25)
[09:01:56 -223275.207682] Model parameter optimization (eps = 1.000000)
[09:02:04 -223274.448597] SLOW spr round 1 (radius: 5)
[09:04:35 -223207.798539] SLOW spr round 2 (radius: 5)
[09:07:06 -223197.904597] SLOW spr round 3 (radius: 5)
[09:09:35 -223193.677235] SLOW spr round 4 (radius: 5)
[09:10:29] [worker #2] ML tree search #15, logLikelihood: -223170.877418
[09:12:01 -223191.945738] SLOW spr round 5 (radius: 5)
[09:14:24 -223191.945721] SLOW spr round 6 (radius: 10)
[09:16:54 -223181.955033] SLOW spr round 7 (radius: 5)
[09:19:41 -223181.858920] SLOW spr round 8 (radius: 10)
[09:22:30 -223180.830140] SLOW spr round 9 (radius: 5)
[09:25:16 -223180.718929] SLOW spr round 10 (radius: 5)
[09:27:49 -223180.700732] SLOW spr round 11 (radius: 10)
[09:30:23 -223177.875147] SLOW spr round 12 (radius: 5)
[09:33:16 -223176.536798] SLOW spr round 13 (radius: 5)
[09:35:51 -223176.383810] SLOW spr round 14 (radius: 5)
[09:38:19 -223176.383431] SLOW spr round 15 (radius: 10)
[09:40:49 -223176.383428] SLOW spr round 16 (radius: 15)
[09:45:13 -223168.283111] SLOW spr round 17 (radius: 5)
[09:48:09 -223164.877030] SLOW spr round 18 (radius: 5)
[09:50:46 -223164.876914] SLOW spr round 19 (radius: 10)
[09:53:21 -223164.876912] SLOW spr round 20 (radius: 15)
[09:57:37 -223164.876912] SLOW spr round 21 (radius: 20)
[10:04:51 -223164.876912] SLOW spr round 22 (radius: 25)
[10:14:00 -223162.389759] SLOW spr round 23 (radius: 5)
[10:17:07 -223145.215889] SLOW spr round 24 (radius: 5)
[10:19:54 -223134.534788] SLOW spr round 25 (radius: 5)
[10:22:27 -223128.220494] SLOW spr round 26 (radius: 5)
[10:24:55 -223128.219845] SLOW spr round 27 (radius: 10)
[10:27:26 -223128.219837] SLOW spr round 28 (radius: 15)
[10:31:59 -223128.219837] SLOW spr round 29 (radius: 20)
[10:39:17 -223128.219836] SLOW spr round 30 (radius: 25)
[10:48:25 -223128.219836] Model parameter optimization (eps = 0.100000)

[10:48:34] [worker #0] ML tree search #10, logLikelihood: -223128.009776

[10:48:34 -646372.929461] Initial branch length optimization
[10:48:38 -560810.826198] Model parameter optimization (eps = 10.000000)
[10:49:37 -560065.245810] AUTODETECT spr round 1 (radius: 5)
[10:52:14 -431087.217396] AUTODETECT spr round 2 (radius: 10)
[10:55:09 -319539.610024] AUTODETECT spr round 3 (radius: 15)
[10:58:33 -266384.527116] AUTODETECT spr round 4 (radius: 20)
[11:02:23 -252109.953467] AUTODETECT spr round 5 (radius: 25)
[11:07:30 -247073.911166] SPR radius for FAST iterations: 25 (autodetect)
[11:07:30 -247073.911166] Model parameter optimization (eps = 3.000000)
[11:07:54 -246972.006779] FAST spr round 1 (radius: 25)
[11:11:52 -225956.259410] FAST spr round 2 (radius: 25)
[11:14:54 -224316.038119] FAST spr round 3 (radius: 25)
[11:17:31 -224065.710920] FAST spr round 4 (radius: 25)
[11:19:46 -224038.146328] FAST spr round 5 (radius: 25)
[11:21:55 -224017.779711] FAST spr round 6 (radius: 25)
[11:23:53 -224008.618175] FAST spr round 7 (radius: 25)
[11:25:49 -224003.108013] FAST spr round 8 (radius: 25)
[11:27:42 -224001.047477] FAST spr round 9 (radius: 25)
[11:29:11] [worker #2] ML tree search #18, logLikelihood: -223384.629979
[11:29:33 -224000.414194] FAST spr round 10 (radius: 25)
[11:31:23 -224000.413189] Model parameter optimization (eps = 1.000000)
[11:31:38 -223998.623790] SLOW spr round 1 (radius: 5)
[11:34:11 -223934.788109] SLOW spr round 2 (radius: 5)
[11:36:37 -223923.689072] SLOW spr round 3 (radius: 5)
[11:39:04 -223921.731145] SLOW spr round 4 (radius: 5)
[11:41:29 -223921.730944] SLOW spr round 5 (radius: 10)
[11:42:10] [worker #1] ML tree search #14, logLikelihood: -223132.103614
[11:43:57 -223916.310334] SLOW spr round 6 (radius: 5)
[11:46:48 -223913.026423] SLOW spr round 7 (radius: 5)
[11:49:27 -223911.656527] SLOW spr round 8 (radius: 5)
[11:51:56 -223911.656420] SLOW spr round 9 (radius: 10)
[11:54:26 -223911.656420] SLOW spr round 10 (radius: 15)
[11:58:43 -223909.795251] SLOW spr round 11 (radius: 5)
[12:01:37 -223909.494975] SLOW spr round 12 (radius: 5)
[12:04:14 -223909.494852] SLOW spr round 13 (radius: 10)
[12:06:50 -223909.494848] SLOW spr round 14 (radius: 15)
[12:11:05 -223909.494847] SLOW spr round 15 (radius: 20)
[12:17:17 -223909.397179] SLOW spr round 16 (radius: 25)
[12:24:45 -223904.025740] SLOW spr round 17 (radius: 5)
[12:27:46 -223902.273912] SLOW spr round 18 (radius: 5)
[12:30:25 -223902.273854] SLOW spr round 19 (radius: 10)
[12:33:03 -223902.273852] SLOW spr round 20 (radius: 15)
[12:37:23 -223837.530289] SLOW spr round 21 (radius: 5)
[12:40:27 -223795.738751] SLOW spr round 22 (radius: 5)
[12:43:12 -223789.122182] SLOW spr round 23 (radius: 5)
[12:45:47 -223784.960185] SLOW spr round 24 (radius: 5)
[12:48:17 -223784.622169] SLOW spr round 25 (radius: 5)
[12:50:45 -223784.622121] SLOW spr round 26 (radius: 10)
[12:53:14 -223784.622121] SLOW spr round 27 (radius: 15)
[12:57:36 -223784.622121] SLOW spr round 28 (radius: 20)
[13:03:47 -223758.626522] SLOW spr round 29 (radius: 5)
[13:06:50 -223348.674801] SLOW spr round 30 (radius: 5)
[13:09:31 -223347.912566] SLOW spr round 31 (radius: 5)
[13:12:02 -223347.912545] SLOW spr round 32 (radius: 10)
[13:14:34 -223347.912545] SLOW spr round 33 (radius: 15)
[13:18:53 -223347.912545] SLOW spr round 34 (radius: 20)
[13:25:08 -223347.912545] SLOW spr round 35 (radius: 25)
[13:33:12 -223310.854471] SLOW spr round 36 (radius: 5)
[13:36:35 -223153.364301] SLOW spr round 37 (radius: 5)
[13:39:31 -223152.822358] SLOW spr round 38 (radius: 5)
[13:42:16 -223152.822228] SLOW spr round 39 (radius: 10)
[13:45:11 -223152.822227] SLOW spr round 40 (radius: 15)
[13:49:50 -223152.822227] SLOW spr round 41 (radius: 20)
[13:56:26 -223152.822227] SLOW spr round 42 (radius: 25)
[14:04:25 -223152.822227] Model parameter optimization (eps = 0.100000)

[14:04:38] [worker #0] ML tree search #13, logLikelihood: -223152.588596

[14:04:38 -652282.282730] Initial branch length optimization
[14:04:42 -567514.902368] Model parameter optimization (eps = 10.000000)
[14:05:26 -566605.741154] AUTODETECT spr round 1 (radius: 5)
[14:08:07 -432841.225021] AUTODETECT spr round 2 (radius: 10)
[14:11:14 -318431.655928] AUTODETECT spr round 3 (radius: 15)
[14:14:41 -268042.426457] AUTODETECT spr round 4 (radius: 20)
[14:18:33 -255992.520090] AUTODETECT spr round 5 (radius: 25)
[14:23:34 -249300.343049] SPR radius for FAST iterations: 25 (autodetect)
[14:23:34 -249300.343049] Model parameter optimization (eps = 3.000000)
[14:23:53 -249222.248984] FAST spr round 1 (radius: 25)
[14:27:56 -225487.148830] FAST spr round 2 (radius: 25)
[14:31:10 -224041.199385] FAST spr round 3 (radius: 25)
[14:33:46 -223888.430222] FAST spr round 4 (radius: 25)
[14:36:12 -223840.352821] FAST spr round 5 (radius: 25)
[14:38:26 -223829.978239] FAST spr round 6 (radius: 25)
[14:40:32 -223829.576564] FAST spr round 7 (radius: 25)
[14:42:36 -223829.576538] Model parameter optimization (eps = 1.000000)
[14:42:45 -223829.053572] SLOW spr round 1 (radius: 5)
[14:45:39 -223740.366683] SLOW spr round 2 (radius: 5)
[14:48:30 -223715.448500] SLOW spr round 3 (radius: 5)
[14:51:12 -223711.302880] SLOW spr round 4 (radius: 5)
[14:53:54 -223708.150393] SLOW spr round 5 (radius: 5)
[14:56:32 -223707.003261] SLOW spr round 6 (radius: 5)
[14:59:09 -223707.003151] SLOW spr round 7 (radius: 10)
[15:01:52 -223702.159993] SLOW spr round 8 (radius: 5)
[15:04:54 -223701.999850] SLOW spr round 9 (radius: 5)
[15:07:42 -223701.999329] SLOW spr round 10 (radius: 10)
[15:10:08] [worker #1] ML tree search #17, logLikelihood: -223122.986094
[15:10:32 -223701.999322] SLOW spr round 11 (radius: 15)
[15:15:06 -223699.098579] SLOW spr round 12 (radius: 5)
[15:18:19 -223695.314724] SLOW spr round 13 (radius: 5)
[15:21:09 -223695.312002] SLOW spr round 14 (radius: 10)
[15:24:02 -223695.311883] SLOW spr round 15 (radius: 15)
[15:28:38 -223694.364280] SLOW spr round 16 (radius: 5)
[15:31:45 -223694.363791] SLOW spr round 17 (radius: 10)
[15:34:56 -223694.363767] SLOW spr round 18 (radius: 15)
[15:39:20 -223694.363764] SLOW spr round 19 (radius: 20)
[15:46:21 -223678.274404] SLOW spr round 20 (radius: 5)
[15:49:43 -223590.596596] SLOW spr round 21 (radius: 5)
[15:52:47 -223553.759609] SLOW spr round 22 (radius: 5)
[15:55:39 -223528.940430] SLOW spr round 23 (radius: 5)
[15:58:22 -223525.333431] SLOW spr round 24 (radius: 5)
[16:01:03 -223523.750967] SLOW spr round 25 (radius: 5)
[16:03:41 -223523.750609] SLOW spr round 26 (radius: 10)
[16:06:25 -223522.829757] SLOW spr round 27 (radius: 5)
[16:09:28 -223521.564612] SLOW spr round 28 (radius: 5)
[16:12:15 -223521.564561] SLOW spr round 29 (radius: 10)
[16:15:05 -223521.564559] SLOW spr round 30 (radius: 15)
[16:19:51 -223521.564559] SLOW spr round 31 (radius: 20)
[16:26:58 -223521.564559] SLOW spr round 32 (radius: 25)
[16:35:10 -223515.369704] SLOW spr round 33 (radius: 5)
[16:37:22] [worker #1] ML tree search #20, logLikelihood: -223139.147787
[16:38:19 -223451.965913] SLOW spr round 34 (radius: 5)
[16:41:08 -223431.282274] SLOW spr round 35 (radius: 5)
[16:43:51 -223430.972831] SLOW spr round 36 (radius: 5)
[16:46:32 -223430.972684] SLOW spr round 37 (radius: 10)
[16:49:16 -223430.972682] SLOW spr round 38 (radius: 15)
[16:54:01 -223430.972682] SLOW spr round 39 (radius: 20)
[17:01:05 -223430.972682] SLOW spr round 40 (radius: 25)
[17:09:33 -223425.964787] SLOW spr round 41 (radius: 5)
[17:12:45 -223420.669070] SLOW spr round 42 (radius: 5)
[17:15:37 -223420.668537] SLOW spr round 43 (radius: 10)
[17:18:30 -223420.668516] SLOW spr round 44 (radius: 15)
[17:23:04 -223420.668514] SLOW spr round 45 (radius: 20)
[17:30:12 -223420.668514] SLOW spr round 46 (radius: 25)
[17:38:38 -223420.668514] Model parameter optimization (eps = 0.100000)

[17:38:49] [worker #0] ML tree search #16, logLikelihood: -223420.237241

[17:38:49 -651210.381813] Initial branch length optimization
[17:38:52 -566721.986280] Model parameter optimization (eps = 10.000000)
[17:39:29 -565974.333042] AUTODETECT spr round 1 (radius: 5)
[17:42:15 -424773.890232] AUTODETECT spr round 2 (radius: 10)
[17:45:16 -310103.423862] AUTODETECT spr round 3 (radius: 15)
[17:49:08 -265518.965102] AUTODETECT spr round 4 (radius: 20)
[17:52:58 -250884.753398] AUTODETECT spr round 5 (radius: 25)
[17:58:19 -245896.336028] SPR radius for FAST iterations: 25 (autodetect)
[17:58:19 -245896.336028] Model parameter optimization (eps = 3.000000)
[17:58:40 -245761.893351] FAST spr round 1 (radius: 25)
[18:02:48 -225299.276159] FAST spr round 2 (radius: 25)
[18:05:57 -223900.092279] FAST spr round 3 (radius: 25)
[18:08:32 -223783.031289] FAST spr round 4 (radius: 25)
[18:10:51 -223769.389718] FAST spr round 5 (radius: 25)
[18:12:59 -223763.524787] FAST spr round 6 (radius: 25)
[18:15:00 -223763.524232] Model parameter optimization (eps = 1.000000)
[18:15:18 -223748.480251] SLOW spr round 1 (radius: 5)
[18:18:00 -223673.574614] SLOW spr round 2 (radius: 5)
[18:20:39 -223672.298473] SLOW spr round 3 (radius: 5)
[18:23:12 -223672.297988] SLOW spr round 4 (radius: 10)
[18:25:49 -223659.774097] SLOW spr round 5 (radius: 5)
[18:28:50 -223656.642201] SLOW spr round 6 (radius: 5)
[18:31:32 -223656.641977] SLOW spr round 7 (radius: 10)
[18:34:15 -223656.597594] SLOW spr round 8 (radius: 15)
[18:38:56 -223651.286813] SLOW spr round 9 (radius: 5)
[18:42:05 -223646.754635] SLOW spr round 10 (radius: 5)
[18:44:51 -223646.753429] SLOW spr round 11 (radius: 10)
[18:47:36 -223646.753409] SLOW spr round 12 (radius: 15)
[18:52:13 -223646.753407] SLOW spr round 13 (radius: 20)
[18:58:49 -223646.753405] SLOW spr round 14 (radius: 25)
[19:06:08 -223646.753403] Model parameter optimization (eps = 0.100000)

[19:06:21] [worker #0] ML tree search #19, logLikelihood: -223646.545225


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.147309,0.252966) (0.090021,0.470332) (0.453213,0.922014) (0.309457,1.623901) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -223099.191656

AIC score: 450208.383313 / AICc score: 8494268.383313 / BIC score: 458097.846175
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=378).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q92766/3_mltree/Q92766.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q92766/3_mltree/Q92766.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q92766/3_mltree/Q92766.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q92766/3_mltree/Q92766.raxml.log

Analysis started: 05-Jul-2021 01:33:37 / finished: 05-Jul-2021 20:39:59

Elapsed time: 68781.677 seconds

Consumed energy: 5167.237 Wh (= 26 km in an electric car, or 129 km with an e-scooter!)