RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 05-Jul-2021 05:57:15 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WVB6/2_msa/Q8WVB6_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WVB6/3_mltree/Q8WVB6 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WVB6/2_msa/Q8WVB6_trimmed_msa.fasta
[00:00:00] Loaded alignment with 520 taxa and 65 sites

WARNING: Sequences tr_B4Q9P5_B4Q9P5_DROSI_7240 and tr_Q8IQ05_Q8IQ05_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4Q9P5_B4Q9P5_DROSI_7240 and tr_B4JQJ0_B4JQJ0_DROGR_7222 are exactly identical!
WARNING: Sequences tr_B4Q9P5_B4Q9P5_DROSI_7240 and tr_B4I327_B4I327_DROSE_7238 are exactly identical!
WARNING: Sequences tr_B4Q9P5_B4Q9P5_DROSI_7240 and tr_Q29ME9_Q29ME9_DROPS_46245 are exactly identical!
WARNING: Sequences tr_B4Q9P5_B4Q9P5_DROSI_7240 and tr_B4MVB5_B4MVB5_DROWI_7260 are exactly identical!
WARNING: Sequences tr_B4Q9P5_B4Q9P5_DROSI_7240 and tr_B3MP61_B3MP61_DROAN_7217 are exactly identical!
WARNING: Sequences tr_B4Q9P5_B4Q9P5_DROSI_7240 and tr_B4G9C8_B4G9C8_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B4Q9P5_B4Q9P5_DROSI_7240 and tr_B4LRR8_B4LRR8_DROVI_7244 are exactly identical!
WARNING: Sequences tr_B4Q9P5_B4Q9P5_DROSI_7240 and tr_B4KJY8_B4KJY8_DROMO_7230 are exactly identical!
WARNING: Sequences tr_B4Q9P5_B4Q9P5_DROSI_7240 and tr_A0A0M4E7S0_A0A0M4E7S0_DROBS_30019 are exactly identical!
WARNING: Sequences tr_A0A286YA00_A0A286YA00_DANRE_7955 and tr_A0A2D0Q3R0_A0A2D0Q3R0_ICTPU_7998 are exactly identical!
WARNING: Sequences sp_Q8BIW9_CTF18_MOUSE_10090 and tr_D4AC99_D4AC99_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q8BIW9_CTF18_MOUSE_10090 and tr_A0A3Q0D9K4_A0A3Q0D9K4_MESAU_10036 are exactly identical!
WARNING: Sequences tr_M3YWS9_M3YWS9_MUSPF_9669 and tr_G1LLQ8_G1LLQ8_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3YWS9_M3YWS9_MUSPF_9669 and tr_A0A2U3ZIK3_A0A2U3ZIK3_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3YWS9_M3YWS9_MUSPF_9669 and tr_A0A2U3Y628_A0A2U3Y628_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3YWS9_M3YWS9_MUSPF_9669 and tr_A0A2Y9KGG7_A0A2Y9KGG7_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YWS9_M3YWS9_MUSPF_9669 and tr_A0A384CKA2_A0A384CKA2_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A1B6QP90_A0A1B6QP90_SORBI_4558 and tr_A0A368SUS7_A0A368SUS7_SETIT_4555 are exactly identical!
WARNING: Sequences tr_A0A1B6QP90_A0A1B6QP90_SORBI_4558 and tr_A0A2T7CEK5_A0A2T7CEK5_9POAL_1504633 are exactly identical!
WARNING: Sequences tr_H2LY12_H2LY12_ORYLA_8090 and tr_M3ZZJ0_M3ZZJ0_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_H2LY12_H2LY12_ORYLA_8090 and tr_I3J5K7_I3J5K7_ORENI_8128 are exactly identical!
WARNING: Sequences tr_H2LY12_H2LY12_ORYLA_8090 and tr_A0A096LX22_A0A096LX22_POEFO_48698 are exactly identical!
WARNING: Sequences tr_H2LY12_H2LY12_ORYLA_8090 and tr_A0A2I4BGI8_A0A2I4BGI8_9TELE_52670 are exactly identical!
WARNING: Sequences tr_H2LY12_H2LY12_ORYLA_8090 and tr_A0A2U9BN59_A0A2U9BN59_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_G1NUV2_G1NUV2_MYOLU_59463 and tr_L5KH04_L5KH04_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_B6QJS5_B6QJS5_TALMQ_441960 and tr_A0A093UYZ2_A0A093UYZ2_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_A7E6I6_A7E6I6_SCLS1_665079 and tr_W9CIT6_W9CIT6_9HELO_1432307 are exactly identical!
WARNING: Sequences tr_A0A2I2YPG5_A0A2I2YPG5_GORGO_9595 and sp_Q8WVB6_CTF18_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G2XJB8_G2XJB8_VERDV_498257 and tr_C9STK0_C9STK0_VERA1_526221 are exactly identical!
WARNING: Sequences tr_G2XJB8_G2XJB8_VERDV_498257 and tr_A0A0G4M0Q6_A0A0G4M0Q6_9PEZI_100787 are exactly identical!
WARNING: Sequences tr_C1GIH5_C1GIH5_PARBD_502780 and tr_C1GNU6_C1GNU6_PARBA_502779 are exactly identical!
WARNING: Sequences tr_C0ND28_C0ND28_AJECG_447093 and tr_C6HJW6_C6HJW6_AJECH_544712 are exactly identical!
WARNING: Sequences tr_C0ND28_C0ND28_AJECG_447093 and tr_F0UJA7_F0UJA7_AJEC8_544711 are exactly identical!
WARNING: Sequences tr_C0ND28_C0ND28_AJECG_447093 and tr_A6R2H2_A6R2H2_AJECN_339724 are exactly identical!
WARNING: Sequences tr_C0ND28_C0ND28_AJECG_447093 and tr_A0A1J9PMW9_A0A1J9PMW9_9EURO_1447872 are exactly identical!
WARNING: Sequences tr_C0ND28_C0ND28_AJECG_447093 and tr_A0A2B7X2A7_A0A2B7X2A7_9EURO_2060905 are exactly identical!
WARNING: Sequences tr_C0ND28_C0ND28_AJECG_447093 and tr_A0A1J9RCW6_A0A1J9RCW6_9EURO_1658174 are exactly identical!
WARNING: Sequences tr_A0A179UPH2_A0A179UPH2_BLAGS_559298 and tr_C5GED9_C5GED9_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_A0A2I3TIN2_A0A2I3TIN2_PANTR_9598 and tr_A0A2R9A3E6_A0A2R9A3E6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F7AA77_F7AA77_HORSE_9796 and tr_G5BXU7_G5BXU7_HETGA_10181 are exactly identical!
WARNING: Sequences tr_Q4DDA7_Q4DDA7_TRYCC_353153 and tr_Q4E1K2_Q4E1K2_TRYCC_353153 are exactly identical!
WARNING: Sequences tr_W5PY44_W5PY44_SHEEP_9940 and tr_I3LC39_I3LC39_PIG_9823 are exactly identical!
WARNING: Sequences tr_W5PY44_W5PY44_SHEEP_9940 and tr_E1B8Q4_E1B8Q4_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_F9FAF7_F9FAF7_FUSOF_660025 and tr_W7LTE8_W7LTE8_GIBM7_334819 are exactly identical!
WARNING: Sequences tr_F9FAF7_F9FAF7_FUSOF_660025 and tr_A0A0D2XQZ6_A0A0D2XQZ6_FUSO4_426428 are exactly identical!
WARNING: Sequences tr_F9FAF7_F9FAF7_FUSOF_660025 and tr_S0DUL1_S0DUL1_GIBF5_1279085 are exactly identical!
WARNING: Sequences tr_F9FAF7_F9FAF7_FUSOF_660025 and tr_X0DI05_X0DI05_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_F9FAF7_F9FAF7_FUSOF_660025 and tr_A0A2H3TTP7_A0A2H3TTP7_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_F9FAF7_F9FAF7_FUSOF_660025 and tr_A0A2K0W0Q7_A0A2K0W0Q7_GIBNY_42673 are exactly identical!
WARNING: Sequences tr_F9FAF7_F9FAF7_FUSOF_660025 and tr_A0A365N7W5_A0A365N7W5_GIBIN_948311 are exactly identical!
WARNING: Sequences tr_A0A158NTR6_A0A158NTR6_ATTCE_12957 and tr_A0A195BP09_A0A195BP09_9HYME_520822 are exactly identical!
WARNING: Sequences tr_J3LMA1_J3LMA1_ORYBR_4533 and tr_A0A0P0VVN7_A0A0P0VVN7_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_F6Q1E8_F6Q1E8_MACMU_9544 and tr_A0A2I3MSX8_A0A2I3MSX8_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6Q1E8_F6Q1E8_MACMU_9544 and tr_A0A0D9RHW2_A0A0D9RHW2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F6Q1E8_F6Q1E8_MACMU_9544 and tr_A0A2K5P814_A0A2K5P814_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6Q1E8_F6Q1E8_MACMU_9544 and tr_A0A2K6C9G2_A0A2K6C9G2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6Q1E8_F6Q1E8_MACMU_9544 and tr_A0A2K5ZIB7_A0A2K5ZIB7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_E5S880_E5S880_TRISP_6334 and tr_A0A0V0SJZ9_A0A0V0SJZ9_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5S880_E5S880_TRISP_6334 and tr_A0A0V1CHA5_A0A0V1CHA5_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_E5S880_E5S880_TRISP_6334 and tr_A0A0V0W8J7_A0A0V0W8J7_9BILA_92179 are exactly identical!
WARNING: Sequences tr_E5S880_E5S880_TRISP_6334 and tr_A0A0V0VKE4_A0A0V0VKE4_9BILA_181606 are exactly identical!
WARNING: Sequences tr_E5S880_E5S880_TRISP_6334 and tr_A0A0V1KX90_A0A0V1KX90_9BILA_6335 are exactly identical!
WARNING: Sequences tr_E5S880_E5S880_TRISP_6334 and tr_A0A0V0ZF64_A0A0V0ZF64_9BILA_990121 are exactly identical!
WARNING: Sequences tr_E5S880_E5S880_TRISP_6334 and tr_A0A0V1PAC8_A0A0V1PAC8_9BILA_92180 are exactly identical!
WARNING: Sequences tr_E5S880_E5S880_TRISP_6334 and tr_A0A0V0TH09_A0A0V0TH09_9BILA_144512 are exactly identical!
WARNING: Sequences tr_H0ZYK5_H0ZYK5_TAEGU_59729 and tr_A0A218U7A9_A0A218U7A9_9PASE_299123 are exactly identical!
WARNING: Sequences tr_F4WJ14_F4WJ14_ACREC_103372 and tr_A0A195FPL5_A0A195FPL5_9HYME_34720 are exactly identical!
WARNING: Sequences tr_G0R7G1_G0R7G1_HYPJQ_431241 and tr_A0A2T4CCY5_A0A2T4CCY5_TRILO_983965 are exactly identical!
WARNING: Sequences tr_B3RMJ4_B3RMJ4_TRIAD_10228 and tr_A0A369RX45_A0A369RX45_9METZ_287889 are exactly identical!
WARNING: Sequences tr_F6I254_F6I254_VITVI_29760 and tr_F6I3F3_F6I3F3_VITVI_29760 are exactly identical!
WARNING: Sequences tr_L8FUB3_L8FUB3_PSED2_658429 and tr_A0A1B8E4N3_A0A1B8E4N3_9PEZI_1524831 are exactly identical!
WARNING: Sequences tr_L8FUB3_L8FUB3_PSED2_658429 and tr_A0A1B8GCZ3_A0A1B8GCZ3_9PEZI_342668 are exactly identical!
WARNING: Sequences tr_L8FUB3_L8FUB3_PSED2_658429 and tr_A0A1B8CFK7_A0A1B8CFK7_9PEZI_1622147 are exactly identical!
WARNING: Sequences tr_M4DFS1_M4DFS1_BRARP_51351 and tr_A0A078G0V3_A0A078G0V3_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M4DFS1_M4DFS1_BRARP_51351 and tr_A0A0D3C7L6_A0A0D3C7L6_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_M8A396_M8A396_TRIUA_4572 and tr_A0A3B6HPP7_A0A3B6HPP7_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_U3JKM8_U3JKM8_FICAL_59894 and tr_A0A091FAZ1_A0A091FAZ1_CORBR_85066 are exactly identical!
WARNING: Sequences tr_W2PEL8_W2PEL8_PHYPN_761204 and tr_A0A0W8C165_A0A0W8C165_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_W2PEL8_W2PEL8_PHYPN_761204 and tr_W2LVX8_W2LVX8_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A010S678_A0A010S678_9PEZI_1445577 and tr_A0A0M9F0G1_A0A0M9F0G1_FUSLA_179993 are exactly identical!
WARNING: Sequences tr_A0A010S678_A0A010S678_9PEZI_1445577 and tr_A0A135RQ77_A0A135RQ77_9PEZI_1209931 are exactly identical!
WARNING: Sequences tr_A0A010S678_A0A010S678_9PEZI_1445577 and tr_I1RMX3_I1RMX3_GIBZE_229533 are exactly identical!
WARNING: Sequences tr_A0A010S678_A0A010S678_9PEZI_1445577 and tr_A0A2T4GNI1_A0A2T4GNI1_FUSCU_5516 are exactly identical!
WARNING: Sequences tr_A0A067EDT1_A0A067EDT1_CITSI_2711 and tr_V4RIK4_V4RIK4_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A0E9NDQ2_A0A0E9NDQ2_SAICN_698492 and tr_A0A0E9NEY9_A0A0E9NEY9_SAICN_698492 are exactly identical!
WARNING: Sequences tr_A0A0A1N438_A0A0A1N438_9FUNG_58291 and tr_A0A0A1NYF1_A0A0A1NYF1_9FUNG_58291 are exactly identical!
WARNING: Sequences tr_A0A0A1N438_A0A0A1N438_9FUNG_58291 and tr_A0A367K909_A0A367K909_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0N8H856_A0A0N8H856_9HYPO_78410 and tr_A0A1B8AKT3_A0A1B8AKT3_FUSPO_36050 are exactly identical!
WARNING: Sequences tr_A0A0N8H856_A0A0N8H856_9HYPO_78410 and tr_A0A1G4BLM8_A0A1G4BLM8_9PEZI_1209926 are exactly identical!
WARNING: Sequences tr_A0A091J8M2_A0A091J8M2_EGRGA_188379 and tr_A0A091WE76_A0A091WE76_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091J8M2_A0A091J8M2_EGRGA_188379 and tr_A0A099ZW10_A0A099ZW10_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091J8M2_A0A091J8M2_EGRGA_188379 and tr_A0A2I0LTL7_A0A2I0LTL7_COLLI_8932 are exactly identical!
WARNING: Sequences tr_A0A091J8M2_A0A091J8M2_EGRGA_188379 and tr_A0A1V4KSV0_A0A1V4KSV0_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A194RAB7_A0A194RAB7_PAPMA_76193 and tr_A0A194QBF0_A0A194QBF0_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A0V0Y4C0_A0A0V0Y4C0_TRIPS_6337 and tr_A0A0V1MWB7_A0A0V1MWB7_9BILA_268474 are exactly identical!
WARNING: Sequences tr_A0A0V0Y4C0_A0A0V0Y4C0_TRIPS_6337 and tr_A0A0V1GY44_A0A0V1GY44_9BILA_268475 are exactly identical!
WARNING: Sequences tr_A0A2P4ZH23_A0A2P4ZH23_9HYPO_398673 and tr_A0A2T3ZM17_A0A2T3ZM17_9HYPO_1042311 are exactly identical!
WARNING: Sequences tr_A0A2P4ZNQ4_A0A2P4ZNQ4_9HYPO_398673 and tr_A0A2T3ZF68_A0A2T3ZF68_9HYPO_1042311 are exactly identical!
WARNING: Sequences tr_A0A0P1BIQ1_A0A0P1BIQ1_9BASI_401625 and tr_A0A316W336_A0A316W336_9BASI_1522189 are exactly identical!
WARNING: Sequences tr_A0A194WC82_A0A194WC82_9PEZI_105487 and tr_A0A194V165_A0A194V165_9PEZI_694573 are exactly identical!
WARNING: Sequences tr_A0A1S3YVW9_A0A1S3YVW9_TOBAC_4097 and tr_A0A1U7XHG4_A0A1U7XHG4_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1B9IM93_A0A1B9IM93_9TREE_1331196 and tr_A0A1B9GZ43_A0A1B9GZ43_9TREE_1296120 are exactly identical!
WARNING: Sequences tr_A0A1E1KSI6_A0A1E1KSI6_9HELO_914237 and tr_A0A2V1CAI3_A0A2V1CAI3_9HELO_1485229 are exactly identical!
WARNING: Sequences tr_A0A1R1X4L2_A0A1R1X4L2_9FUNG_133412 and tr_A0A1R1YB94_A0A1R1YB94_9FUNG_133412 are exactly identical!
WARNING: Sequences tr_A0A1R1X4L2_A0A1R1X4L2_9FUNG_133412 and tr_A0A1R1YGR3_A0A1R1YGR3_9FUNG_133412 are exactly identical!
WARNING: Sequences tr_A0A1V8U345_A0A1V8U345_9PEZI_1974281 and tr_A0A1V8USZ6_A0A1V8USZ6_9PEZI_1974281 are exactly identical!
WARNING: Sequences tr_A0A1V8U345_A0A1V8U345_9PEZI_1974281 and tr_A0A1V8TAU4_A0A1V8TAU4_9PEZI_1507870 are exactly identical!
WARNING: Sequences tr_A0A226NM48_A0A226NM48_CALSU_9009 and tr_A0A226PP76_A0A226PP76_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2G5I3R9_A0A2G5I3R9_CERBT_122368 and tr_A0A2I0RPU1_A0A2I0RPU1_9PEZI_348901 are exactly identical!
WARNING: Sequences tr_A0A2G5I3R9_A0A2G5I3R9_CERBT_122368 and tr_A0A2S6CGR2_A0A2S6CGR2_9PEZI_357750 are exactly identical!
WARNING: Sequences tr_A0A2S7QR42_A0A2S7QR42_9HELO_2070414 and tr_A0A2S7QXZ3_A0A2S7QXZ3_9HELO_2070412 are exactly identical!
WARNING: Sequences tr_A0A103Y0K1_A0A103Y0K1_CYNCS_59895 and tr_A0A2U1PMT3_A0A2U1PMT3_ARTAN_35608 are exactly identical!
WARNING: Sequences tr_A0A2U4AJV0_A0A2U4AJV0_TURTR_9739 and tr_A0A2Y9Q3X5_A0A2Y9Q3X5_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4AJV0_A0A2U4AJV0_TURTR_9739 and tr_A0A2Y9FTN0_A0A2Y9FTN0_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2U4AJV0_A0A2U4AJV0_TURTR_9739 and tr_A0A384A374_A0A384A374_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A319CXN6_A0A319CXN6_9EURO_1448315 and tr_A0A2V5I886_A0A2V5I886_9EURO_1450541 are exactly identical!
WARNING: Sequences tr_A0A319CXN6_A0A319CXN6_9EURO_1448315 and tr_A0A2V5H104_A0A2V5H104_9EURO_1450538 are exactly identical!
WARNING: Sequences tr_A0A369HHY3_A0A369HHY3_9HYPO_2039874 and tr_A0A367LPZ0_A0A367LPZ0_9HYPO_1330021 are exactly identical!
WARNING: Duplicate sequences found: 119

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WVB6/3_mltree/Q8WVB6.raxml.reduced.phy

Alignment comprises 1 partitions and 65 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 65 / 65
Gaps: 2.30 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WVB6/3_mltree/Q8WVB6.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 520 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 65 / 5200
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -42877.132255] Initial branch length optimization
[00:00:00 -34792.058235] Model parameter optimization (eps = 10.000000)
[00:00:09 -34667.094023] AUTODETECT spr round 1 (radius: 5)
[00:00:32 -24623.123436] AUTODETECT spr round 2 (radius: 10)
[00:00:57 -19139.851622] AUTODETECT spr round 3 (radius: 15)
[00:01:24 -16697.566539] AUTODETECT spr round 4 (radius: 20)
[00:01:54 -15227.361717] AUTODETECT spr round 5 (radius: 25)
[00:02:27 -14526.279815] SPR radius for FAST iterations: 25 (autodetect)
[00:02:27 -14526.279815] Model parameter optimization (eps = 3.000000)
[00:02:36 -14456.037714] FAST spr round 1 (radius: 25)
[00:03:01 -11810.586015] FAST spr round 2 (radius: 25)
[00:03:23 -11449.422601] FAST spr round 3 (radius: 25)
[00:03:43 -11392.323400] FAST spr round 4 (radius: 25)
[00:04:01 -11387.802919] FAST spr round 5 (radius: 25)
[00:04:19 -11386.689226] FAST spr round 6 (radius: 25)
[00:04:37 -11382.513401] FAST spr round 7 (radius: 25)
[00:04:56 -11382.509569] Model parameter optimization (eps = 1.000000)
[00:05:00 -11381.820530] SLOW spr round 1 (radius: 5)
[00:05:26 -11379.456231] SLOW spr round 2 (radius: 5)
[00:05:50 -11379.456075] SLOW spr round 3 (radius: 10)
[00:06:15 -11370.926960] SLOW spr round 4 (radius: 5)
[00:06:46 -11370.336879] SLOW spr round 5 (radius: 5)
[00:07:13 -11370.336723] SLOW spr round 6 (radius: 10)
[00:07:37 -11370.336722] SLOW spr round 7 (radius: 15)
[00:08:11 -11367.231985] SLOW spr round 8 (radius: 5)
[00:08:41 -11367.188658] SLOW spr round 9 (radius: 10)
[00:09:06 -11367.188618] SLOW spr round 10 (radius: 15)
[00:09:37 -11366.485342] SLOW spr round 11 (radius: 5)
[00:10:08 -11366.485308] SLOW spr round 12 (radius: 10)
[00:10:33 -11366.485307] SLOW spr round 13 (radius: 15)
[00:11:06 -11366.166595] SLOW spr round 14 (radius: 5)
[00:11:36 -11366.166207] SLOW spr round 15 (radius: 10)
[00:12:01 -11366.166206] SLOW spr round 16 (radius: 15)
[00:12:33 -11366.166161] SLOW spr round 17 (radius: 20)
[00:13:12 -11364.698654] SLOW spr round 18 (radius: 5)
[00:13:42 -11364.698599] SLOW spr round 19 (radius: 10)
[00:14:08 -11364.698597] SLOW spr round 20 (radius: 15)
[00:14:39 -11364.698596] SLOW spr round 21 (radius: 20)
[00:15:18 -11364.698595] SLOW spr round 22 (radius: 25)
[00:16:04 -11358.217705] SLOW spr round 23 (radius: 5)
[00:16:35 -11351.234254] SLOW spr round 24 (radius: 5)
[00:17:01 -11351.160422] SLOW spr round 25 (radius: 10)
[00:17:24 -11351.160350] SLOW spr round 26 (radius: 15)
[00:17:57 -11351.160346] SLOW spr round 27 (radius: 20)
[00:18:36 -11351.160345] SLOW spr round 28 (radius: 25)
[00:19:20 -11349.023076] SLOW spr round 29 (radius: 5)
[00:19:51 -11349.023070] SLOW spr round 30 (radius: 10)
[00:20:17 -11349.023069] SLOW spr round 31 (radius: 15)
[00:20:48 -11349.023068] SLOW spr round 32 (radius: 20)
[00:21:27 -11349.023067] SLOW spr round 33 (radius: 25)
[00:22:13 -11349.023066] Model parameter optimization (eps = 0.100000)

[00:22:16] ML tree search #1, logLikelihood: -11348.894875

[00:22:16 -42776.082133] Initial branch length optimization
[00:22:17 -34822.303913] Model parameter optimization (eps = 10.000000)
[00:22:27 -34747.429142] AUTODETECT spr round 1 (radius: 5)
[00:22:49 -24348.904554] AUTODETECT spr round 2 (radius: 10)
[00:23:13 -18289.430836] AUTODETECT spr round 3 (radius: 15)
[00:23:39 -16323.437558] AUTODETECT spr round 4 (radius: 20)
[00:24:09 -15063.917222] AUTODETECT spr round 5 (radius: 25)
[00:24:43 -14444.990495] SPR radius for FAST iterations: 25 (autodetect)
[00:24:43 -14444.990495] Model parameter optimization (eps = 3.000000)
[00:24:55 -14394.137100] FAST spr round 1 (radius: 25)
[00:25:23 -11762.428710] FAST spr round 2 (radius: 25)
[00:25:46 -11452.604541] FAST spr round 3 (radius: 25)
[00:26:05 -11449.619788] FAST spr round 4 (radius: 25)
[00:26:23 -11448.523768] FAST spr round 5 (radius: 25)
[00:26:41 -11448.523725] Model parameter optimization (eps = 1.000000)
[00:26:47 -11446.055270] SLOW spr round 1 (radius: 5)
[00:27:11 -11444.806057] SLOW spr round 2 (radius: 5)
[00:27:35 -11443.836380] SLOW spr round 3 (radius: 5)
[00:27:58 -11442.805206] SLOW spr round 4 (radius: 5)
[00:28:20 -11442.804651] SLOW spr round 5 (radius: 10)
[00:28:42 -11442.702718] SLOW spr round 6 (radius: 5)
[00:29:12 -11441.558856] SLOW spr round 7 (radius: 5)
[00:29:38 -11441.558367] SLOW spr round 8 (radius: 10)
[00:30:01 -11441.558352] SLOW spr round 9 (radius: 15)
[00:30:33 -11406.392145] SLOW spr round 10 (radius: 5)
[00:31:04 -11363.452814] SLOW spr round 11 (radius: 5)
[00:31:31 -11357.327784] SLOW spr round 12 (radius: 5)
[00:31:54 -11357.326872] SLOW spr round 13 (radius: 10)
[00:32:16 -11357.326828] SLOW spr round 14 (radius: 15)
[00:32:48 -11357.326826] SLOW spr round 15 (radius: 20)
[00:33:24 -11357.326826] SLOW spr round 16 (radius: 25)
[00:34:03 -11357.326826] Model parameter optimization (eps = 0.100000)

[00:34:15] ML tree search #2, logLikelihood: -11354.066857

[00:34:15 -42745.052723] Initial branch length optimization
[00:34:15 -35027.873152] Model parameter optimization (eps = 10.000000)
[00:34:25 -34932.774873] AUTODETECT spr round 1 (radius: 5)
[00:34:47 -24374.477657] AUTODETECT spr round 2 (radius: 10)
[00:35:10 -18974.015286] AUTODETECT spr round 3 (radius: 15)
[00:35:36 -16526.708728] AUTODETECT spr round 4 (radius: 20)
[00:36:09 -14076.596574] AUTODETECT spr round 5 (radius: 25)
[00:36:42 -13455.203473] SPR radius for FAST iterations: 25 (autodetect)
[00:36:42 -13455.203473] Model parameter optimization (eps = 3.000000)
[00:36:48 -13412.687005] FAST spr round 1 (radius: 25)
[00:37:13 -11794.231716] FAST spr round 2 (radius: 25)
[00:37:34 -11653.848432] FAST spr round 3 (radius: 25)
[00:37:53 -11486.903965] FAST spr round 4 (radius: 25)
[00:38:12 -11451.105753] FAST spr round 5 (radius: 25)
[00:38:30 -11450.037424] FAST spr round 6 (radius: 25)
[00:38:47 -11449.051426] FAST spr round 7 (radius: 25)
[00:39:05 -11449.051409] Model parameter optimization (eps = 1.000000)
[00:39:12 -11446.765234] SLOW spr round 1 (radius: 5)
[00:39:35 -11441.447360] SLOW spr round 2 (radius: 5)
[00:39:58 -11439.574321] SLOW spr round 3 (radius: 5)
[00:40:20 -11439.245916] SLOW spr round 4 (radius: 5)
[00:40:42 -11439.245909] SLOW spr round 5 (radius: 10)
[00:41:04 -11438.652978] SLOW spr round 6 (radius: 5)
[00:41:32 -11438.652978] SLOW spr round 7 (radius: 10)
[00:41:58 -11436.895164] SLOW spr round 8 (radius: 5)
[00:42:27 -11436.409675] SLOW spr round 9 (radius: 5)
[00:42:52 -11436.409337] SLOW spr round 10 (radius: 10)
[00:43:15 -11436.409215] SLOW spr round 11 (radius: 15)
[00:43:48 -11435.180504] SLOW spr round 12 (radius: 5)
[00:44:19 -11432.646203] SLOW spr round 13 (radius: 5)
[00:44:45 -11432.645746] SLOW spr round 14 (radius: 10)
[00:45:08 -11432.645709] SLOW spr round 15 (radius: 15)
[00:45:43 -11431.425565] SLOW spr round 16 (radius: 5)
[00:46:13 -11431.425565] SLOW spr round 17 (radius: 10)
[00:46:39 -11431.425565] SLOW spr round 18 (radius: 15)
[00:47:11 -11431.425565] SLOW spr round 19 (radius: 20)
[00:47:53 -11387.355798] SLOW spr round 20 (radius: 5)
[00:48:25 -11355.047655] SLOW spr round 21 (radius: 5)
[00:48:52 -11353.851834] SLOW spr round 22 (radius: 5)
[00:49:15 -11353.850621] SLOW spr round 23 (radius: 10)
[00:49:38 -11353.850505] SLOW spr round 24 (radius: 15)
[00:50:12 -11352.677157] SLOW spr round 25 (radius: 5)
[00:50:43 -11350.313077] SLOW spr round 26 (radius: 5)
[00:51:09 -11350.211023] SLOW spr round 27 (radius: 5)
[00:51:32 -11350.026851] SLOW spr round 28 (radius: 5)
[00:51:56 -11348.294050] SLOW spr round 29 (radius: 5)
[00:52:18 -11348.226728] SLOW spr round 30 (radius: 10)
[00:52:40 -11348.226680] SLOW spr round 31 (radius: 15)
[00:53:16 -11348.226676] SLOW spr round 32 (radius: 20)
[00:53:55 -11348.226672] SLOW spr round 33 (radius: 25)
[00:54:39 -11346.244571] SLOW spr round 34 (radius: 5)
[00:55:11 -11344.752189] SLOW spr round 35 (radius: 5)
[00:55:37 -11344.751749] SLOW spr round 36 (radius: 10)
[00:56:01 -11344.751737] SLOW spr round 37 (radius: 15)
[00:56:34 -11344.751737] SLOW spr round 38 (radius: 20)
[00:57:12 -11344.751737] SLOW spr round 39 (radius: 25)
[00:57:53 -11344.314098] SLOW spr round 40 (radius: 5)
[00:58:24 -11344.218522] SLOW spr round 41 (radius: 10)
[00:58:50 -11344.218497] SLOW spr round 42 (radius: 15)
[00:59:21 -11344.218496] SLOW spr round 43 (radius: 20)
[00:59:58 -11344.218495] SLOW spr round 44 (radius: 25)
[01:00:39 -11344.218494] Model parameter optimization (eps = 0.100000)

[01:00:45] ML tree search #3, logLikelihood: -11343.431733

[01:00:45 -42841.833303] Initial branch length optimization
[01:00:45 -34581.625871] Model parameter optimization (eps = 10.000000)
[01:00:55 -34471.275604] AUTODETECT spr round 1 (radius: 5)
[01:01:18 -23557.520404] AUTODETECT spr round 2 (radius: 10)
[01:01:42 -18997.268007] AUTODETECT spr round 3 (radius: 15)
[01:02:10 -15385.380338] AUTODETECT spr round 4 (radius: 20)
[01:02:41 -14492.393498] AUTODETECT spr round 5 (radius: 25)
[01:03:14 -14113.539277] SPR radius for FAST iterations: 25 (autodetect)
[01:03:14 -14113.539277] Model parameter optimization (eps = 3.000000)
[01:03:23 -14059.155381] FAST spr round 1 (radius: 25)
[01:03:47 -12284.011592] FAST spr round 2 (radius: 25)
[01:04:08 -11985.282162] FAST spr round 3 (radius: 25)
[01:04:27 -11972.310195] FAST spr round 4 (radius: 25)
[01:04:45 -11971.509754] FAST spr round 5 (radius: 25)
[01:05:02 -11971.508566] Model parameter optimization (eps = 1.000000)
[01:05:07 -11970.129348] SLOW spr round 1 (radius: 5)
[01:05:30 -11966.028445] SLOW spr round 2 (radius: 5)
[01:05:55 -11964.731922] SLOW spr round 3 (radius: 5)
[01:06:17 -11964.731201] SLOW spr round 4 (radius: 10)
[01:06:39 -11963.974901] SLOW spr round 5 (radius: 5)
[01:07:09 -11963.882743] SLOW spr round 6 (radius: 10)
[01:07:34 -11963.447901] SLOW spr round 7 (radius: 5)
[01:08:03 -11963.066109] SLOW spr round 8 (radius: 5)
[01:08:28 -11963.066081] SLOW spr round 9 (radius: 10)
[01:08:51 -11963.066081] SLOW spr round 10 (radius: 15)
[01:09:23 -11963.066081] SLOW spr round 11 (radius: 20)
[01:10:02 -11906.696803] SLOW spr round 12 (radius: 5)
[01:10:36 -11830.550417] SLOW spr round 13 (radius: 5)
[01:11:05 -11786.587160] SLOW spr round 14 (radius: 5)
[01:11:29 -11782.923148] SLOW spr round 15 (radius: 5)
[01:11:52 -11781.519014] SLOW spr round 16 (radius: 5)
[01:12:15 -11781.518553] SLOW spr round 17 (radius: 10)
[01:12:39 -11776.864115] SLOW spr round 18 (radius: 5)
[01:13:08 -11773.957460] SLOW spr round 19 (radius: 5)
[01:13:34 -11773.220615] SLOW spr round 20 (radius: 5)
[01:13:58 -11773.220615] SLOW spr round 21 (radius: 10)
[01:14:21 -11772.828466] SLOW spr round 22 (radius: 5)
[01:14:50 -11772.828296] SLOW spr round 23 (radius: 10)
[01:15:16 -11772.828294] SLOW spr round 24 (radius: 15)
[01:15:50 -11766.284787] SLOW spr round 25 (radius: 5)
[01:16:20 -11766.282546] SLOW spr round 26 (radius: 10)
[01:16:47 -11766.282471] SLOW spr round 27 (radius: 15)
[01:17:21 -11766.282468] SLOW spr round 28 (radius: 20)
[01:18:04 -11726.766610] SLOW spr round 29 (radius: 5)
[01:18:35 -11714.316289] SLOW spr round 30 (radius: 5)
[01:19:02 -11714.313614] SLOW spr round 31 (radius: 10)
[01:19:26 -11714.313273] SLOW spr round 32 (radius: 15)
[01:20:03 -11714.313230] SLOW spr round 33 (radius: 20)
[01:20:47 -11713.051795] SLOW spr round 34 (radius: 5)
[01:21:18 -11713.051785] SLOW spr round 35 (radius: 10)
[01:21:46 -11713.051785] SLOW spr round 36 (radius: 15)
[01:22:21 -11713.051785] SLOW spr round 37 (radius: 20)
[01:23:05 -11712.825223] SLOW spr round 38 (radius: 5)
[01:23:36 -11712.824203] SLOW spr round 39 (radius: 10)
[01:24:04 -11712.372621] SLOW spr round 40 (radius: 5)
[01:24:32 -11712.372123] SLOW spr round 41 (radius: 10)
[01:24:57 -11712.372117] SLOW spr round 42 (radius: 15)
[01:25:33 -11712.372117] SLOW spr round 43 (radius: 20)
[01:26:17 -11712.372117] SLOW spr round 44 (radius: 25)
[01:27:08 -11538.628882] SLOW spr round 45 (radius: 5)
[01:27:40 -11410.927597] SLOW spr round 46 (radius: 5)
[01:28:08 -11381.687515] SLOW spr round 47 (radius: 5)
[01:28:33 -11358.777568] SLOW spr round 48 (radius: 5)
[01:28:56 -11358.283117] SLOW spr round 49 (radius: 5)
[01:29:18 -11358.283115] SLOW spr round 50 (radius: 10)
[01:29:41 -11358.283114] SLOW spr round 51 (radius: 15)
[01:30:17 -11358.259893] SLOW spr round 52 (radius: 20)
[01:31:01 -11358.259225] SLOW spr round 53 (radius: 25)
[01:31:49 -11356.402533] SLOW spr round 54 (radius: 5)
[01:32:20 -11356.401213] SLOW spr round 55 (radius: 10)
[01:32:48 -11356.401089] SLOW spr round 56 (radius: 15)
[01:33:21 -11356.401076] SLOW spr round 57 (radius: 20)
[01:34:04 -11356.401075] SLOW spr round 58 (radius: 25)
[01:34:49 -11356.401074] Model parameter optimization (eps = 0.100000)

[01:34:54] ML tree search #4, logLikelihood: -11355.667627

[01:34:54 -42318.860225] Initial branch length optimization
[01:34:54 -34423.643361] Model parameter optimization (eps = 10.000000)
[01:35:07 -34283.505504] AUTODETECT spr round 1 (radius: 5)
[01:35:29 -24238.938175] AUTODETECT spr round 2 (radius: 10)
[01:35:53 -18889.988508] AUTODETECT spr round 3 (radius: 15)
[01:36:18 -16434.907139] AUTODETECT spr round 4 (radius: 20)
[01:36:47 -14448.253636] AUTODETECT spr round 5 (radius: 25)
[01:37:19 -13536.523620] SPR radius for FAST iterations: 25 (autodetect)
[01:37:19 -13536.523620] Model parameter optimization (eps = 3.000000)
[01:37:26 -13506.740252] FAST spr round 1 (radius: 25)
[01:37:49 -11550.353669] FAST spr round 2 (radius: 25)
[01:38:09 -11392.847487] FAST spr round 3 (radius: 25)
[01:38:29 -11385.186215] FAST spr round 4 (radius: 25)
[01:38:48 -11380.944759] FAST spr round 5 (radius: 25)
[01:39:06 -11378.416223] FAST spr round 6 (radius: 25)
[01:39:23 -11378.052165] FAST spr round 7 (radius: 25)
[01:39:41 -11378.051987] Model parameter optimization (eps = 1.000000)
[01:39:46 -11375.672950] SLOW spr round 1 (radius: 5)
[01:40:09 -11374.171063] SLOW spr round 2 (radius: 5)
[01:40:32 -11374.169744] SLOW spr round 3 (radius: 10)
[01:40:54 -11373.949759] SLOW spr round 4 (radius: 5)
[01:41:23 -11373.818205] SLOW spr round 5 (radius: 5)
[01:41:47 -11373.818202] SLOW spr round 6 (radius: 10)
[01:42:10 -11373.818202] SLOW spr round 7 (radius: 15)
[01:42:43 -11372.145561] SLOW spr round 8 (radius: 5)
[01:43:13 -11371.989533] SLOW spr round 9 (radius: 5)
[01:43:38 -11371.989027] SLOW spr round 10 (radius: 10)
[01:44:02 -11366.843882] SLOW spr round 11 (radius: 5)
[01:44:30 -11366.843475] SLOW spr round 12 (radius: 10)
[01:44:54 -11366.843468] SLOW spr round 13 (radius: 15)
[01:45:25 -11366.275864] SLOW spr round 14 (radius: 5)
[01:45:55 -11366.274799] SLOW spr round 15 (radius: 10)
[01:46:21 -11366.274682] SLOW spr round 16 (radius: 15)
[01:46:52 -11365.850962] SLOW spr round 17 (radius: 5)
[01:47:21 -11365.850260] SLOW spr round 18 (radius: 10)
[01:47:47 -11365.850183] SLOW spr round 19 (radius: 15)
[01:48:18 -11365.517453] SLOW spr round 20 (radius: 5)
[01:48:47 -11365.517034] SLOW spr round 21 (radius: 10)
[01:49:13 -11365.517032] SLOW spr round 22 (radius: 15)
[01:49:44 -11365.517032] SLOW spr round 23 (radius: 20)
[01:50:21 -11365.111776] SLOW spr round 24 (radius: 5)
[01:50:51 -11365.111377] SLOW spr round 25 (radius: 10)
[01:51:17 -11365.111369] SLOW spr round 26 (radius: 15)
[01:51:48 -11365.111369] SLOW spr round 27 (radius: 20)
[01:52:26 -11364.931463] SLOW spr round 28 (radius: 5)
[01:52:56 -11364.666743] SLOW spr round 29 (radius: 5)
[01:53:22 -11363.162947] SLOW spr round 30 (radius: 5)
[01:53:45 -11363.162946] SLOW spr round 31 (radius: 10)
[01:54:08 -11363.162946] SLOW spr round 32 (radius: 15)
[01:54:41 -11363.162946] SLOW spr round 33 (radius: 20)
[01:55:18 -11363.162946] SLOW spr round 34 (radius: 25)
[01:55:57 -11363.064878] Model parameter optimization (eps = 0.100000)

[01:55:59] ML tree search #5, logLikelihood: -11363.012501

[01:55:59 -42829.254151] Initial branch length optimization
[01:56:00 -35007.607737] Model parameter optimization (eps = 10.000000)
[01:56:07 -34906.281444] AUTODETECT spr round 1 (radius: 5)
[01:56:29 -24070.282107] AUTODETECT spr round 2 (radius: 10)
[01:56:53 -18367.739921] AUTODETECT spr round 3 (radius: 15)
[01:57:19 -15475.328978] AUTODETECT spr round 4 (radius: 20)
[01:57:49 -14134.267887] AUTODETECT spr round 5 (radius: 25)
[01:58:26 -13592.890434] SPR radius for FAST iterations: 25 (autodetect)
[01:58:26 -13592.890434] Model parameter optimization (eps = 3.000000)
[01:58:32 -13562.332708] FAST spr round 1 (radius: 25)
[01:58:55 -11673.506615] FAST spr round 2 (radius: 25)
[01:59:15 -11540.447421] FAST spr round 3 (radius: 25)
[01:59:34 -11529.237854] FAST spr round 4 (radius: 25)
[01:59:52 -11529.237428] Model parameter optimization (eps = 1.000000)
[01:59:58 -11527.799337] SLOW spr round 1 (radius: 5)
[02:00:22 -11523.820748] SLOW spr round 2 (radius: 5)
[02:00:45 -11523.599334] SLOW spr round 3 (radius: 5)
[02:01:07 -11523.599150] SLOW spr round 4 (radius: 10)
[02:01:29 -11523.599130] SLOW spr round 5 (radius: 15)
[02:02:05 -11514.443037] SLOW spr round 6 (radius: 5)
[02:02:36 -11500.216531] SLOW spr round 7 (radius: 5)
[02:03:02 -11498.439848] SLOW spr round 8 (radius: 5)
[02:03:26 -11498.439846] SLOW spr round 9 (radius: 10)
[02:03:49 -11498.439846] SLOW spr round 10 (radius: 15)
[02:04:23 -11492.829445] SLOW spr round 11 (radius: 5)
[02:04:55 -11491.654720] SLOW spr round 12 (radius: 5)
[02:05:21 -11491.654220] SLOW spr round 13 (radius: 10)
[02:05:44 -11490.966730] SLOW spr round 14 (radius: 5)
[02:06:13 -11490.966548] SLOW spr round 15 (radius: 10)
[02:06:38 -11490.966502] SLOW spr round 16 (radius: 15)
[02:07:14 -11422.575462] SLOW spr round 17 (radius: 5)
[02:07:46 -11411.593541] SLOW spr round 18 (radius: 5)
[02:08:12 -11411.591630] SLOW spr round 19 (radius: 10)
[02:08:36 -11408.012599] SLOW spr round 20 (radius: 5)
[02:09:05 -11408.010223] SLOW spr round 21 (radius: 10)
[02:09:30 -11408.010221] SLOW spr round 22 (radius: 15)
[02:10:04 -11408.010221] SLOW spr round 23 (radius: 20)
[02:10:49 -11406.548129] SLOW spr round 24 (radius: 5)
[02:11:20 -11406.548091] SLOW spr round 25 (radius: 10)
[02:11:47 -11406.548090] SLOW spr round 26 (radius: 15)
[02:12:22 -11406.548090] SLOW spr round 27 (radius: 20)
[02:13:07 -11406.548090] SLOW spr round 28 (radius: 25)
[02:13:52 -11406.079499] SLOW spr round 29 (radius: 5)
[02:14:23 -11406.044338] SLOW spr round 30 (radius: 10)
[02:14:51 -11406.043648] SLOW spr round 31 (radius: 15)
[02:15:25 -11406.043645] SLOW spr round 32 (radius: 20)
[02:16:11 -11406.043645] SLOW spr round 33 (radius: 25)
[02:16:56 -11406.043645] Model parameter optimization (eps = 0.100000)

[02:16:59] ML tree search #6, logLikelihood: -11405.995556

[02:16:59 -42421.710856] Initial branch length optimization
[02:16:59 -34532.240278] Model parameter optimization (eps = 10.000000)
[02:17:08 -34428.082553] AUTODETECT spr round 1 (radius: 5)
[02:17:30 -23805.146709] AUTODETECT spr round 2 (radius: 10)
[02:17:56 -18999.537396] AUTODETECT spr round 3 (radius: 15)
[02:18:25 -15826.099559] AUTODETECT spr round 4 (radius: 20)
[02:18:55 -14453.654069] AUTODETECT spr round 5 (radius: 25)
[02:19:27 -14085.178016] SPR radius for FAST iterations: 25 (autodetect)
[02:19:27 -14085.178016] Model parameter optimization (eps = 3.000000)
[02:19:36 -14048.681190] FAST spr round 1 (radius: 25)
[02:20:01 -12021.159154] FAST spr round 2 (radius: 25)
[02:20:22 -11766.941305] FAST spr round 3 (radius: 25)
[02:20:41 -11737.972488] FAST spr round 4 (radius: 25)
[02:20:59 -11737.302267] FAST spr round 5 (radius: 25)
[02:21:17 -11737.302224] Model parameter optimization (eps = 1.000000)
[02:21:19 -11737.147720] SLOW spr round 1 (radius: 5)
[02:21:44 -11735.446244] SLOW spr round 2 (radius: 5)
[02:22:07 -11735.444627] SLOW spr round 3 (radius: 10)
[02:22:30 -11728.257097] SLOW spr round 4 (radius: 5)
[02:23:00 -11725.425330] SLOW spr round 5 (radius: 5)
[02:23:26 -11725.425054] SLOW spr round 6 (radius: 10)
[02:23:49 -11725.425050] SLOW spr round 7 (radius: 15)
[02:24:25 -11714.427131] SLOW spr round 8 (radius: 5)
[02:24:55 -11714.410594] SLOW spr round 9 (radius: 10)
[02:25:20 -11714.410561] SLOW spr round 10 (radius: 15)
[02:25:53 -11714.410560] SLOW spr round 11 (radius: 20)
[02:26:34 -11714.410560] SLOW spr round 12 (radius: 25)
[02:27:20 -11709.864269] SLOW spr round 13 (radius: 5)
[02:27:51 -11709.864267] SLOW spr round 14 (radius: 10)
[02:28:17 -11709.864267] SLOW spr round 15 (radius: 15)
[02:28:50 -11709.864267] SLOW spr round 16 (radius: 20)
[02:29:30 -11707.932633] SLOW spr round 17 (radius: 5)
[02:30:01 -11705.573547] SLOW spr round 18 (radius: 5)
[02:30:28 -11703.760993] SLOW spr round 19 (radius: 5)
[02:30:52 -11703.760938] SLOW spr round 20 (radius: 10)
[02:31:14 -11703.760938] SLOW spr round 21 (radius: 15)
[02:31:49 -11703.760938] SLOW spr round 22 (radius: 20)
[02:32:31 -11703.760938] SLOW spr round 23 (radius: 25)
[02:33:17 -11703.324432] SLOW spr round 24 (radius: 5)
[02:33:48 -11703.316331] SLOW spr round 25 (radius: 10)
[02:34:15 -11703.316330] SLOW spr round 26 (radius: 15)
[02:34:46 -11703.316330] SLOW spr round 27 (radius: 20)
[02:35:25 -11703.316330] SLOW spr round 28 (radius: 25)
[02:36:07 -11703.316330] Model parameter optimization (eps = 0.100000)

[02:36:10] ML tree search #7, logLikelihood: -11703.202785

[02:36:10 -42266.029366] Initial branch length optimization
[02:36:11 -34257.565063] Model parameter optimization (eps = 10.000000)
[02:36:20 -34137.335187] AUTODETECT spr round 1 (radius: 5)
[02:36:42 -24418.465458] AUTODETECT spr round 2 (radius: 10)
[02:37:08 -19226.398566] AUTODETECT spr round 3 (radius: 15)
[02:37:37 -15344.795028] AUTODETECT spr round 4 (radius: 20)
[02:38:08 -13581.445627] AUTODETECT spr round 5 (radius: 25)
[02:38:41 -13174.460252] SPR radius for FAST iterations: 25 (autodetect)
[02:38:41 -13174.460252] Model parameter optimization (eps = 3.000000)
[02:38:48 -13102.644645] FAST spr round 1 (radius: 25)
[02:39:10 -11519.260470] FAST spr round 2 (radius: 25)
[02:39:30 -11430.442641] FAST spr round 3 (radius: 25)
[02:39:49 -11423.279986] FAST spr round 4 (radius: 25)
[02:40:06 -11422.508686] FAST spr round 5 (radius: 25)
[02:40:23 -11422.506170] Model parameter optimization (eps = 1.000000)
[02:40:28 -11421.382143] SLOW spr round 1 (radius: 5)
[02:40:52 -11417.924055] SLOW spr round 2 (radius: 5)
[02:41:15 -11414.977907] SLOW spr round 3 (radius: 5)
[02:41:37 -11414.977377] SLOW spr round 4 (radius: 10)
[02:41:59 -11414.977220] SLOW spr round 5 (radius: 15)
[02:42:32 -11412.419771] SLOW spr round 6 (radius: 5)
[02:43:02 -11410.645142] SLOW spr round 7 (radius: 5)
[02:43:28 -11410.645032] SLOW spr round 8 (radius: 10)
[02:43:51 -11410.644927] SLOW spr round 9 (radius: 15)
[02:44:22 -11410.644824] SLOW spr round 10 (radius: 20)
[02:45:00 -11406.060972] SLOW spr round 11 (radius: 5)
[02:45:31 -11404.527524] SLOW spr round 12 (radius: 5)
[02:45:58 -11404.526424] SLOW spr round 13 (radius: 10)
[02:46:20 -11404.526186] SLOW spr round 14 (radius: 15)
[02:46:52 -11404.526070] SLOW spr round 15 (radius: 20)
[02:47:28 -11404.525970] SLOW spr round 16 (radius: 25)
[02:48:05 -11404.525871] Model parameter optimization (eps = 0.100000)

[02:48:11] ML tree search #8, logLikelihood: -11403.947262

[02:48:11 -42518.819185] Initial branch length optimization
[02:48:11 -34629.082184] Model parameter optimization (eps = 10.000000)
[02:48:19 -34527.340605] AUTODETECT spr round 1 (radius: 5)
[02:48:41 -23574.709829] AUTODETECT spr round 2 (radius: 10)
[02:49:04 -18684.479889] AUTODETECT spr round 3 (radius: 15)
[02:49:30 -16070.108127] AUTODETECT spr round 4 (radius: 20)
[02:50:02 -14253.556193] AUTODETECT spr round 5 (radius: 25)
[02:50:35 -13984.118079] SPR radius for FAST iterations: 25 (autodetect)
[02:50:35 -13984.118079] Model parameter optimization (eps = 3.000000)
[02:50:42 -13952.057123] FAST spr round 1 (radius: 25)
[02:51:06 -11760.115382] FAST spr round 2 (radius: 25)
[02:51:27 -11532.609380] FAST spr round 3 (radius: 25)
[02:51:46 -11472.080625] FAST spr round 4 (radius: 25)
[02:52:04 -11469.652584] FAST spr round 5 (radius: 25)
[02:52:21 -11469.652534] Model parameter optimization (eps = 1.000000)
[02:52:26 -11467.330572] SLOW spr round 1 (radius: 5)
[02:52:50 -11464.361749] SLOW spr round 2 (radius: 5)
[02:53:12 -11464.283232] SLOW spr round 3 (radius: 10)
[02:53:34 -11464.283227] SLOW spr round 4 (radius: 15)
[02:54:05 -11461.953069] SLOW spr round 5 (radius: 5)
[02:54:36 -11461.448336] SLOW spr round 6 (radius: 5)
[02:55:02 -11460.287706] SLOW spr round 7 (radius: 5)
[02:55:25 -11460.287693] SLOW spr round 8 (radius: 10)
[02:55:48 -11459.603218] SLOW spr round 9 (radius: 5)
[02:56:17 -11459.473779] SLOW spr round 10 (radius: 5)
[02:56:42 -11459.473752] SLOW spr round 11 (radius: 10)
[02:57:05 -11459.473751] SLOW spr round 12 (radius: 15)
[02:57:38 -11451.817330] SLOW spr round 13 (radius: 5)
[02:58:09 -11448.579248] SLOW spr round 14 (radius: 5)
[02:58:34 -11448.579075] SLOW spr round 15 (radius: 10)
[02:58:57 -11448.072379] SLOW spr round 16 (radius: 5)
[02:59:26 -11448.064066] SLOW spr round 17 (radius: 10)
[02:59:51 -11448.064028] SLOW spr round 18 (radius: 15)
[03:00:22 -11448.064026] SLOW spr round 19 (radius: 20)
[03:01:00 -11440.535247] SLOW spr round 20 (radius: 5)
[03:01:30 -11440.461438] SLOW spr round 21 (radius: 10)
[03:01:56 -11439.056754] SLOW spr round 22 (radius: 5)
[03:02:24 -11439.054654] SLOW spr round 23 (radius: 10)
[03:02:48 -11438.864866] SLOW spr round 24 (radius: 5)
[03:03:17 -11438.507629] SLOW spr round 25 (radius: 5)
[03:03:42 -11438.507041] SLOW spr round 26 (radius: 10)
[03:04:05 -11438.215826] SLOW spr round 27 (radius: 5)
[03:04:34 -11437.880734] SLOW spr round 28 (radius: 5)
[03:04:58 -11437.880676] SLOW spr round 29 (radius: 10)
[03:05:21 -11436.279141] SLOW spr round 30 (radius: 5)
[03:05:50 -11436.257191] SLOW spr round 31 (radius: 10)
[03:06:14 -11436.256240] SLOW spr round 32 (radius: 15)
[03:06:46 -11436.256106] SLOW spr round 33 (radius: 20)
[03:07:23 -11436.194721] SLOW spr round 34 (radius: 25)
[03:08:04 -11354.644636] SLOW spr round 35 (radius: 5)
[03:08:35 -11354.180261] SLOW spr round 36 (radius: 5)
[03:09:02 -11354.178716] SLOW spr round 37 (radius: 10)
[03:09:25 -11354.178634] SLOW spr round 38 (radius: 15)
[03:09:58 -11353.748221] SLOW spr round 39 (radius: 5)
[03:10:29 -11350.757429] SLOW spr round 40 (radius: 5)
[03:10:55 -11350.460948] SLOW spr round 41 (radius: 5)
[03:11:18 -11350.460615] SLOW spr round 42 (radius: 10)
[03:11:41 -11350.460597] SLOW spr round 43 (radius: 15)
[03:12:14 -11350.155303] SLOW spr round 44 (radius: 5)
[03:12:44 -11350.154157] SLOW spr round 45 (radius: 10)
[03:13:09 -11350.154070] SLOW spr round 46 (radius: 15)
[03:13:40 -11350.154061] SLOW spr round 47 (radius: 20)
[03:14:19 -11350.154060] SLOW spr round 48 (radius: 25)
[03:15:01 -11350.154060] Model parameter optimization (eps = 0.100000)

[03:15:07] ML tree search #9, logLikelihood: -11348.849785

[03:15:07 -42597.020862] Initial branch length optimization
[03:15:08 -34849.901956] Model parameter optimization (eps = 10.000000)
[03:15:18 -34675.134674] AUTODETECT spr round 1 (radius: 5)
[03:15:40 -24241.158218] AUTODETECT spr round 2 (radius: 10)
[03:16:03 -18550.893033] AUTODETECT spr round 3 (radius: 15)
[03:16:30 -16299.882726] AUTODETECT spr round 4 (radius: 20)
[03:17:00 -14356.146504] AUTODETECT spr round 5 (radius: 25)
[03:17:30 -13651.623186] SPR radius for FAST iterations: 25 (autodetect)
[03:17:30 -13651.623186] Model parameter optimization (eps = 3.000000)
[03:17:38 -13599.549715] FAST spr round 1 (radius: 25)
[03:18:02 -11812.015504] FAST spr round 2 (radius: 25)
[03:18:24 -11623.636473] FAST spr round 3 (radius: 25)
[03:18:43 -11576.099193] FAST spr round 4 (radius: 25)
[03:19:01 -11573.721768] FAST spr round 5 (radius: 25)
[03:19:18 -11571.946722] FAST spr round 6 (radius: 25)
[03:19:35 -11571.946629] Model parameter optimization (eps = 1.000000)
[03:19:41 -11569.748498] SLOW spr round 1 (radius: 5)
[03:20:05 -11563.879392] SLOW spr round 2 (radius: 5)
[03:20:28 -11562.705797] SLOW spr round 3 (radius: 5)
[03:20:50 -11562.354247] SLOW spr round 4 (radius: 5)
[03:21:11 -11562.354142] SLOW spr round 5 (radius: 10)
[03:21:33 -11560.449406] SLOW spr round 6 (radius: 5)
[03:22:03 -11558.477186] SLOW spr round 7 (radius: 5)
[03:22:28 -11558.475416] SLOW spr round 8 (radius: 10)
[03:22:51 -11556.610685] SLOW spr round 9 (radius: 5)
[03:23:19 -11556.610423] SLOW spr round 10 (radius: 10)
[03:23:43 -11556.610312] SLOW spr round 11 (radius: 15)
[03:24:14 -11556.610214] SLOW spr round 12 (radius: 20)
[03:24:51 -11555.876706] SLOW spr round 13 (radius: 5)
[03:25:21 -11555.876554] SLOW spr round 14 (radius: 10)
[03:25:47 -11555.876459] SLOW spr round 15 (radius: 15)
[03:26:18 -11555.115293] SLOW spr round 16 (radius: 5)
[03:26:49 -11551.307273] SLOW spr round 17 (radius: 5)
[03:27:15 -11550.934490] SLOW spr round 18 (radius: 5)
[03:27:38 -11550.934342] SLOW spr round 19 (radius: 10)
[03:28:00 -11550.934198] SLOW spr round 20 (radius: 15)
[03:28:34 -11550.759448] SLOW spr round 21 (radius: 5)
[03:29:04 -11550.759299] SLOW spr round 22 (radius: 10)
[03:29:29 -11550.759157] SLOW spr round 23 (radius: 15)
[03:30:00 -11550.759016] SLOW spr round 24 (radius: 20)
[03:30:38 -11550.268092] SLOW spr round 25 (radius: 5)
[03:31:08 -11550.265732] SLOW spr round 26 (radius: 10)
[03:31:34 -11550.265564] SLOW spr round 27 (radius: 15)
[03:32:06 -11550.265426] SLOW spr round 28 (radius: 20)
[03:32:43 -11550.265290] SLOW spr round 29 (radius: 25)
[03:33:22 -11454.435984] SLOW spr round 30 (radius: 5)
[03:33:54 -11362.956762] SLOW spr round 31 (radius: 5)
[03:34:21 -11361.758023] SLOW spr round 32 (radius: 5)
[03:34:44 -11361.756940] SLOW spr round 33 (radius: 10)
[03:35:06 -11361.756622] SLOW spr round 34 (radius: 15)
[03:35:40 -11361.756463] SLOW spr round 35 (radius: 20)
[03:36:17 -11361.505162] SLOW spr round 36 (radius: 5)
[03:36:47 -11361.504280] SLOW spr round 37 (radius: 10)
[03:37:13 -11361.504145] SLOW spr round 38 (radius: 15)
[03:37:44 -11361.504034] SLOW spr round 39 (radius: 20)
[03:38:22 -11361.503926] SLOW spr round 40 (radius: 25)
[03:39:01 -11361.503820] Model parameter optimization (eps = 0.100000)

[03:39:05] ML tree search #10, logLikelihood: -11360.106581

[03:39:05 -42600.091053] Initial branch length optimization
[03:39:05 -34715.704440] Model parameter optimization (eps = 10.000000)
[03:39:14 -34579.527827] AUTODETECT spr round 1 (radius: 5)
[03:39:36 -23825.500809] AUTODETECT spr round 2 (radius: 10)
[03:40:00 -18861.681627] AUTODETECT spr round 3 (radius: 15)
[03:40:26 -16378.922810] AUTODETECT spr round 4 (radius: 20)
[03:40:56 -14812.505946] AUTODETECT spr round 5 (radius: 25)
[03:41:27 -14608.828487] SPR radius for FAST iterations: 25 (autodetect)
[03:41:27 -14608.828487] Model parameter optimization (eps = 3.000000)
[03:41:34 -14551.052471] FAST spr round 1 (radius: 25)
[03:41:59 -12958.302790] FAST spr round 2 (radius: 25)
[03:42:19 -12820.365436] FAST spr round 3 (radius: 25)
[03:42:39 -12801.743994] FAST spr round 4 (radius: 25)
[03:42:58 -12791.107864] FAST spr round 5 (radius: 25)
[03:43:16 -12790.781211] FAST spr round 6 (radius: 25)
[03:43:33 -12790.780940] Model parameter optimization (eps = 1.000000)
[03:43:36 -12789.991542] SLOW spr round 1 (radius: 5)
[03:44:01 -12789.885435] SLOW spr round 2 (radius: 5)
[03:44:23 -12789.885353] SLOW spr round 3 (radius: 10)
[03:44:46 -12789.669048] SLOW spr round 4 (radius: 5)
[03:45:15 -12789.533915] SLOW spr round 5 (radius: 5)
[03:45:41 -12789.533914] SLOW spr round 6 (radius: 10)
[03:46:04 -12789.202429] SLOW spr round 7 (radius: 5)
[03:46:33 -12789.202428] SLOW spr round 8 (radius: 10)
[03:46:58 -12789.202427] SLOW spr round 9 (radius: 15)
[03:47:29 -12787.015975] SLOW spr round 10 (radius: 5)
[03:48:00 -12786.360421] SLOW spr round 11 (radius: 5)
[03:48:27 -12785.998714] SLOW spr round 12 (radius: 5)
[03:48:51 -12785.998287] SLOW spr round 13 (radius: 10)
[03:49:14 -12785.998192] SLOW spr round 14 (radius: 15)
[03:49:46 -12785.998171] SLOW spr round 15 (radius: 20)
[03:50:20 -12785.998166] SLOW spr round 16 (radius: 25)
[03:50:56 -12785.946195] Model parameter optimization (eps = 0.100000)

[03:50:59] ML tree search #11, logLikelihood: -12785.783697

[03:50:59 -42708.716372] Initial branch length optimization
[03:51:00 -34786.542999] Model parameter optimization (eps = 10.000000)
[03:51:11 -34663.481568] AUTODETECT spr round 1 (radius: 5)
[03:51:32 -24039.095953] AUTODETECT spr round 2 (radius: 10)
[03:51:56 -18731.242171] AUTODETECT spr round 3 (radius: 15)
[03:52:21 -17251.078577] AUTODETECT spr round 4 (radius: 20)
[03:52:48 -16497.364781] AUTODETECT spr round 5 (radius: 25)
[03:53:16 -15667.540669] SPR radius for FAST iterations: 25 (autodetect)
[03:53:16 -15667.540669] Model parameter optimization (eps = 3.000000)
[03:53:24 -15608.633250] FAST spr round 1 (radius: 25)
[03:53:49 -13812.048025] FAST spr round 2 (radius: 25)
[03:54:10 -13717.102796] FAST spr round 3 (radius: 25)
[03:54:30 -13705.036836] FAST spr round 4 (radius: 25)
[03:54:50 -13698.322931] FAST spr round 5 (radius: 25)
[03:55:09 -13696.147058] FAST spr round 6 (radius: 25)
[03:55:26 -13696.115754] Model parameter optimization (eps = 1.000000)
[03:55:31 -13694.619976] SLOW spr round 1 (radius: 5)
[03:55:56 -13689.732043] SLOW spr round 2 (radius: 5)
[03:56:20 -13685.155161] SLOW spr round 3 (radius: 5)
[03:56:43 -13683.421426] SLOW spr round 4 (radius: 5)
[03:57:06 -13683.421015] SLOW spr round 5 (radius: 10)
[03:57:28 -13682.616156] SLOW spr round 6 (radius: 5)
[03:57:58 -13678.779892] SLOW spr round 7 (radius: 5)
[03:58:24 -13678.772092] SLOW spr round 8 (radius: 10)
[03:58:48 -13677.395843] SLOW spr round 9 (radius: 5)
[03:59:17 -13677.395625] SLOW spr round 10 (radius: 10)
[03:59:42 -13677.395617] SLOW spr round 11 (radius: 15)
[04:00:14 -13675.312578] SLOW spr round 12 (radius: 5)
[04:00:44 -13674.409666] SLOW spr round 13 (radius: 5)
[04:01:11 -13674.409576] SLOW spr round 14 (radius: 10)
[04:01:34 -13674.409576] SLOW spr round 15 (radius: 15)
[04:02:07 -13672.714973] SLOW spr round 16 (radius: 5)
[04:02:37 -13672.343231] SLOW spr round 17 (radius: 5)
[04:03:04 -13672.342986] SLOW spr round 18 (radius: 10)
[04:03:27 -13672.342962] SLOW spr round 19 (radius: 15)
[04:04:00 -13671.058750] SLOW spr round 20 (radius: 5)
[04:04:30 -13671.042173] SLOW spr round 21 (radius: 10)
[04:04:56 -13671.042167] SLOW spr round 22 (radius: 15)
[04:05:27 -13671.042167] SLOW spr round 23 (radius: 20)
[04:06:03 -13671.042167] SLOW spr round 24 (radius: 25)
[04:06:43 -13423.956597] SLOW spr round 25 (radius: 5)
[04:07:16 -12705.042075] SLOW spr round 26 (radius: 5)
[04:07:45 -12544.024722] SLOW spr round 27 (radius: 5)
[04:08:11 -12478.292706] SLOW spr round 28 (radius: 5)
[04:08:35 -12470.658104] SLOW spr round 29 (radius: 5)
[04:08:59 -12470.131879] SLOW spr round 30 (radius: 5)
[04:09:21 -12470.131863] SLOW spr round 31 (radius: 10)
[04:09:46 -12379.330703] SLOW spr round 32 (radius: 5)
[04:10:16 -12362.057154] SLOW spr round 33 (radius: 5)
[04:10:43 -12360.882201] SLOW spr round 34 (radius: 5)
[04:11:07 -12360.881819] SLOW spr round 35 (radius: 10)
[04:11:31 -12355.838541] SLOW spr round 36 (radius: 5)
[04:12:02 -12353.884668] SLOW spr round 37 (radius: 5)
[04:12:29 -12352.493506] SLOW spr round 38 (radius: 5)
[04:12:53 -12352.492582] SLOW spr round 39 (radius: 10)
[04:13:16 -12351.746631] SLOW spr round 40 (radius: 5)
[04:13:45 -12351.746620] SLOW spr round 41 (radius: 10)
[04:14:11 -12351.746619] SLOW spr round 42 (radius: 15)
[04:14:44 -12350.372062] SLOW spr round 43 (radius: 5)
[04:15:14 -12350.156511] SLOW spr round 44 (radius: 5)
[04:15:40 -12350.156090] SLOW spr round 45 (radius: 10)
[04:16:05 -12350.156087] SLOW spr round 46 (radius: 15)
[04:16:39 -12350.156087] SLOW spr round 47 (radius: 20)
[04:17:16 -12349.438203] SLOW spr round 48 (radius: 5)
[04:17:47 -12349.388334] SLOW spr round 49 (radius: 10)
[04:18:14 -12349.388332] SLOW spr round 50 (radius: 15)
[04:18:46 -12348.249530] SLOW spr round 51 (radius: 5)
[04:19:16 -12348.249243] SLOW spr round 52 (radius: 10)
[04:19:42 -12348.249228] SLOW spr round 53 (radius: 15)
[04:20:14 -12348.249226] SLOW spr round 54 (radius: 20)
[04:20:53 -12348.165607] SLOW spr round 55 (radius: 25)
[04:21:35 -12263.486800] SLOW spr round 56 (radius: 5)
[04:22:09 -12058.920708] SLOW spr round 57 (radius: 5)
[04:22:38 -11998.610354] SLOW spr round 58 (radius: 5)
[04:23:03 -11993.297651] SLOW spr round 59 (radius: 5)
[04:23:25 -11993.297423] SLOW spr round 60 (radius: 10)
[04:23:49 -11976.039080] SLOW spr round 61 (radius: 5)
[04:24:19 -11864.281735] SLOW spr round 62 (radius: 5)
[04:24:45 -11864.281660] SLOW spr round 63 (radius: 10)
[04:25:08 -11864.281660] SLOW spr round 64 (radius: 15)
[04:25:42 -11849.683727] SLOW spr round 65 (radius: 5)
[04:26:12 -11849.466278] SLOW spr round 66 (radius: 5)
[04:26:37 -11849.465851] SLOW spr round 67 (radius: 10)
[04:27:02 -11841.351622] SLOW spr round 68 (radius: 5)
[04:27:31 -11840.894338] SLOW spr round 69 (radius: 5)
[04:27:56 -11840.894329] SLOW spr round 70 (radius: 10)
[04:28:19 -11840.894329] SLOW spr round 71 (radius: 15)
[04:28:52 -11839.511526] SLOW spr round 72 (radius: 5)
[04:29:22 -11839.511473] SLOW spr round 73 (radius: 10)
[04:29:48 -11839.511468] SLOW spr round 74 (radius: 15)
[04:30:19 -11839.493747] SLOW spr round 75 (radius: 20)
[04:30:58 -11839.478526] SLOW spr round 76 (radius: 25)
[04:31:39 -11839.478499] Model parameter optimization (eps = 0.100000)

[04:31:44] ML tree search #12, logLikelihood: -11838.418394

[04:31:44 -42411.234822] Initial branch length optimization
[04:31:45 -34755.630553] Model parameter optimization (eps = 10.000000)
[04:31:53 -34672.661932] AUTODETECT spr round 1 (radius: 5)
[04:32:14 -24770.047971] AUTODETECT spr round 2 (radius: 10)
[04:32:38 -18769.873831] AUTODETECT spr round 3 (radius: 15)
[04:33:04 -15471.042495] AUTODETECT spr round 4 (radius: 20)
[04:33:34 -14405.492116] AUTODETECT spr round 5 (radius: 25)
[04:34:07 -13645.866001] SPR radius for FAST iterations: 25 (autodetect)
[04:34:07 -13645.866001] Model parameter optimization (eps = 3.000000)
[04:34:14 -13619.347327] FAST spr round 1 (radius: 25)
[04:34:38 -11923.132332] FAST spr round 2 (radius: 25)
[04:34:59 -11526.366717] FAST spr round 3 (radius: 25)
[04:35:19 -11463.131518] FAST spr round 4 (radius: 25)
[04:35:36 -11462.837642] FAST spr round 5 (radius: 25)
[04:35:54 -11462.293679] FAST spr round 6 (radius: 25)
[04:36:10 -11462.293521] Model parameter optimization (eps = 1.000000)
[04:36:15 -11460.204559] SLOW spr round 1 (radius: 5)
[04:36:39 -11455.535791] SLOW spr round 2 (radius: 5)
[04:37:02 -11448.765681] SLOW spr round 3 (radius: 5)
[04:37:25 -11446.998510] SLOW spr round 4 (radius: 5)
[04:37:46 -11446.998155] SLOW spr round 5 (radius: 10)
[04:38:08 -11445.794460] SLOW spr round 6 (radius: 5)
[04:38:36 -11445.794128] SLOW spr round 7 (radius: 10)
[04:39:01 -11440.315770] SLOW spr round 8 (radius: 5)
[04:39:29 -11440.311740] SLOW spr round 9 (radius: 10)
[04:39:52 -11440.311352] SLOW spr round 10 (radius: 15)
[04:40:24 -11355.189211] SLOW spr round 11 (radius: 5)
[04:40:54 -11354.135972] SLOW spr round 12 (radius: 5)
[04:41:21 -11351.472478] SLOW spr round 13 (radius: 5)
[04:41:44 -11351.471999] SLOW spr round 14 (radius: 10)
[04:42:05 -11351.471647] SLOW spr round 15 (radius: 15)
[04:42:38 -11351.471297] SLOW spr round 16 (radius: 20)
[04:43:14 -11351.470949] SLOW spr round 17 (radius: 25)
[04:43:50 -11349.983222] SLOW spr round 18 (radius: 5)
[04:44:20 -11349.982752] SLOW spr round 19 (radius: 10)
[04:44:46 -11349.982440] SLOW spr round 20 (radius: 15)
[04:45:16 -11349.982217] SLOW spr round 21 (radius: 20)
[04:45:52 -11349.981995] SLOW spr round 22 (radius: 25)
[04:46:28 -11349.981775] Model parameter optimization (eps = 0.100000)

[04:46:31] ML tree search #13, logLikelihood: -11349.767803

[04:46:31 -42953.994865] Initial branch length optimization
[04:46:32 -35081.391144] Model parameter optimization (eps = 10.000000)
[04:46:42 -34996.487258] AUTODETECT spr round 1 (radius: 5)
[04:47:03 -24276.208879] AUTODETECT spr round 2 (radius: 10)
[04:47:26 -19174.779612] AUTODETECT spr round 3 (radius: 15)
[04:47:50 -16776.860663] AUTODETECT spr round 4 (radius: 20)
[04:48:17 -15741.980048] AUTODETECT spr round 5 (radius: 25)
[04:48:46 -15052.986426] SPR radius for FAST iterations: 25 (autodetect)
[04:48:46 -15052.986426] Model parameter optimization (eps = 3.000000)
[04:48:52 -15020.679787] FAST spr round 1 (radius: 25)
[04:49:16 -13269.137451] FAST spr round 2 (radius: 25)
[04:49:40 -12976.081052] FAST spr round 3 (radius: 25)
[04:50:01 -12255.666043] FAST spr round 4 (radius: 25)
[04:50:22 -11997.773168] FAST spr round 5 (radius: 25)
[04:50:42 -11934.114613] FAST spr round 6 (radius: 25)
[04:51:00 -11918.264164] FAST spr round 7 (radius: 25)
[04:51:18 -11916.912506] FAST spr round 8 (radius: 25)
[04:51:35 -11916.910390] Model parameter optimization (eps = 1.000000)
[04:51:41 -11914.767682] SLOW spr round 1 (radius: 5)
[04:52:04 -11911.878700] SLOW spr round 2 (radius: 5)
[04:52:27 -11911.415286] SLOW spr round 3 (radius: 5)
[04:52:48 -11911.414552] SLOW spr round 4 (radius: 10)
[04:53:10 -11909.155030] SLOW spr round 5 (radius: 5)
[04:53:40 -11908.516397] SLOW spr round 6 (radius: 5)
[04:54:06 -11908.196620] SLOW spr round 7 (radius: 5)
[04:54:30 -11907.838546] SLOW spr round 8 (radius: 5)
[04:54:52 -11907.837156] SLOW spr round 9 (radius: 10)
[04:55:14 -11907.837035] SLOW spr round 10 (radius: 15)
[04:55:50 -11776.768299] SLOW spr round 11 (radius: 5)
[04:56:20 -11627.762390] SLOW spr round 12 (radius: 5)
[04:56:46 -11619.573308] SLOW spr round 13 (radius: 5)
[04:57:10 -11619.317908] SLOW spr round 14 (radius: 5)
[04:57:32 -11619.317415] SLOW spr round 15 (radius: 10)
[04:57:54 -11617.176072] SLOW spr round 16 (radius: 5)
[04:58:23 -11617.015991] SLOW spr round 17 (radius: 5)
[04:58:48 -11617.015947] SLOW spr round 18 (radius: 10)
[04:59:10 -11617.015946] SLOW spr round 19 (radius: 15)
[04:59:43 -11614.871910] SLOW spr round 20 (radius: 5)
[05:00:13 -11614.185199] SLOW spr round 21 (radius: 5)
[05:00:39 -11613.384399] SLOW spr round 22 (radius: 5)
[05:01:02 -11613.383850] SLOW spr round 23 (radius: 10)
[05:01:24 -11613.383805] SLOW spr round 24 (radius: 15)
[05:01:57 -11613.383801] SLOW spr round 25 (radius: 20)
[05:02:33 -11613.383800] SLOW spr round 26 (radius: 25)
[05:03:10 -11613.383800] Model parameter optimization (eps = 0.100000)

[05:03:14] ML tree search #14, logLikelihood: -11613.094037

[05:03:14 -42551.210979] Initial branch length optimization
[05:03:14 -34641.375510] Model parameter optimization (eps = 10.000000)
[05:03:26 -34521.063884] AUTODETECT spr round 1 (radius: 5)
[05:03:47 -24107.955518] AUTODETECT spr round 2 (radius: 10)
[05:04:12 -17890.580868] AUTODETECT spr round 3 (radius: 15)
[05:04:37 -15077.979668] AUTODETECT spr round 4 (radius: 20)
[05:05:04 -14660.981498] AUTODETECT spr round 5 (radius: 25)
[05:05:33 -14537.064930] SPR radius for FAST iterations: 25 (autodetect)
[05:05:33 -14537.064930] Model parameter optimization (eps = 3.000000)
[05:05:41 -14462.702537] FAST spr round 1 (radius: 25)
[05:06:04 -12588.768456] FAST spr round 2 (radius: 25)
[05:06:24 -12392.461319] FAST spr round 3 (radius: 25)
[05:06:43 -12144.023629] FAST spr round 4 (radius: 25)
[05:07:02 -12032.045409] FAST spr round 5 (radius: 25)
[05:07:22 -11925.889443] FAST spr round 6 (radius: 25)
[05:07:41 -11900.938905] FAST spr round 7 (radius: 25)
[05:07:58 -11895.798001] FAST spr round 8 (radius: 25)
[05:08:15 -11895.797933] Model parameter optimization (eps = 1.000000)
[05:08:20 -11893.586779] SLOW spr round 1 (radius: 5)
[05:08:44 -11891.270706] SLOW spr round 2 (radius: 5)
[05:09:07 -11890.917882] SLOW spr round 3 (radius: 5)
[05:09:29 -11890.917836] SLOW spr round 4 (radius: 10)
[05:09:51 -11890.917832] SLOW spr round 5 (radius: 15)
[05:10:27 -11886.411189] SLOW spr round 6 (radius: 5)
[05:10:57 -11886.411142] SLOW spr round 7 (radius: 10)
[05:11:24 -11880.844608] SLOW spr round 8 (radius: 5)
[05:11:53 -11876.328100] SLOW spr round 9 (radius: 5)
[05:12:18 -11876.326358] SLOW spr round 10 (radius: 10)
[05:12:41 -11871.766055] SLOW spr round 11 (radius: 5)
[05:13:11 -11869.982592] SLOW spr round 12 (radius: 5)
[05:13:37 -11869.257945] SLOW spr round 13 (radius: 5)
[05:14:01 -11867.952884] SLOW spr round 14 (radius: 5)
[05:14:23 -11867.952803] SLOW spr round 15 (radius: 10)
[05:14:45 -11867.830683] SLOW spr round 16 (radius: 5)
[05:15:14 -11867.830609] SLOW spr round 17 (radius: 10)
[05:15:40 -11867.830609] SLOW spr round 18 (radius: 15)
[05:16:12 -11867.554118] SLOW spr round 19 (radius: 5)
[05:16:42 -11867.488339] SLOW spr round 20 (radius: 10)
[05:17:07 -11867.488319] SLOW spr round 21 (radius: 15)
[05:17:39 -11867.347113] SLOW spr round 22 (radius: 5)
[05:18:09 -11867.347088] SLOW spr round 23 (radius: 10)
[05:18:35 -11866.893205] SLOW spr round 24 (radius: 5)
[05:19:03 -11866.893205] SLOW spr round 25 (radius: 10)
[05:19:28 -11866.893205] SLOW spr round 26 (radius: 15)
[05:20:00 -11866.893205] SLOW spr round 27 (radius: 20)
[05:20:37 -11864.888391] SLOW spr round 28 (radius: 5)
[05:21:07 -11840.217773] SLOW spr round 29 (radius: 5)
[05:21:33 -11840.217681] SLOW spr round 30 (radius: 10)
[05:21:57 -11840.217681] SLOW spr round 31 (radius: 15)
[05:22:30 -11840.217681] SLOW spr round 32 (radius: 20)
[05:23:06 -11840.217681] SLOW spr round 33 (radius: 25)
[05:23:45 -11828.997327] SLOW spr round 34 (radius: 5)
[05:24:16 -11802.509836] SLOW spr round 35 (radius: 5)
[05:24:43 -11801.460763] SLOW spr round 36 (radius: 5)
[05:25:07 -11801.460762] SLOW spr round 37 (radius: 10)
[05:25:29 -11801.426635] SLOW spr round 38 (radius: 15)
[05:26:03 -11801.425743] SLOW spr round 39 (radius: 20)
[05:26:39 -11801.425690] SLOW spr round 40 (radius: 25)
[05:27:19 -11764.081788] SLOW spr round 41 (radius: 5)
[05:27:50 -11658.363379] SLOW spr round 42 (radius: 5)
[05:28:17 -11592.977793] SLOW spr round 43 (radius: 5)
[05:28:42 -11516.354493] SLOW spr round 44 (radius: 5)
[05:29:06 -11490.040140] SLOW spr round 45 (radius: 5)
[05:29:29 -11490.040020] SLOW spr round 46 (radius: 10)
[05:29:51 -11470.358377] SLOW spr round 47 (radius: 5)
[05:30:20 -11469.822251] SLOW spr round 48 (radius: 5)
[05:30:45 -11469.822249] SLOW spr round 49 (radius: 10)
[05:31:08 -11469.822249] SLOW spr round 50 (radius: 15)
[05:31:41 -11469.822249] SLOW spr round 51 (radius: 20)
[05:32:16 -11468.833894] SLOW spr round 52 (radius: 5)
[05:32:46 -11468.563080] SLOW spr round 53 (radius: 5)
[05:33:12 -11468.563039] SLOW spr round 54 (radius: 10)
[05:33:36 -11468.134468] SLOW spr round 55 (radius: 5)
[05:34:04 -11468.134352] SLOW spr round 56 (radius: 10)
[05:34:28 -11468.134349] SLOW spr round 57 (radius: 15)
[05:35:00 -11468.134349] SLOW spr round 58 (radius: 20)
[05:35:37 -11468.134349] SLOW spr round 59 (radius: 25)
[05:36:17 -11468.134349] Model parameter optimization (eps = 0.100000)

[05:36:22] ML tree search #15, logLikelihood: -11467.282749

[05:36:22 -42238.325619] Initial branch length optimization
[05:36:23 -34167.273424] Model parameter optimization (eps = 10.000000)
[05:36:32 -34052.571921] AUTODETECT spr round 1 (radius: 5)
[05:36:53 -23932.091269] AUTODETECT spr round 2 (radius: 10)
[05:37:17 -17927.827436] AUTODETECT spr round 3 (radius: 15)
[05:37:44 -15161.524259] AUTODETECT spr round 4 (radius: 20)
[05:38:16 -14492.195742] AUTODETECT spr round 5 (radius: 25)
[05:38:52 -13647.798614] SPR radius for FAST iterations: 25 (autodetect)
[05:38:52 -13647.798614] Model parameter optimization (eps = 3.000000)
[05:39:02 -13612.914867] FAST spr round 1 (radius: 25)
[05:39:25 -11657.829784] FAST spr round 2 (radius: 25)
[05:39:45 -11435.831873] FAST spr round 3 (radius: 25)
[05:40:03 -11420.309692] FAST spr round 4 (radius: 25)
[05:40:21 -11419.313983] FAST spr round 5 (radius: 25)
[05:40:38 -11419.292462] Model parameter optimization (eps = 1.000000)
[05:40:41 -11418.909069] SLOW spr round 1 (radius: 5)
[05:41:05 -11417.801121] SLOW spr round 2 (radius: 5)
[05:41:27 -11417.798594] SLOW spr round 3 (radius: 10)
[05:41:49 -11417.797783] SLOW spr round 4 (radius: 15)
[05:42:26 -11392.005218] SLOW spr round 5 (radius: 5)
[05:42:56 -11387.322206] SLOW spr round 6 (radius: 5)
[05:43:23 -11386.777881] SLOW spr round 7 (radius: 5)
[05:43:46 -11386.747499] SLOW spr round 8 (radius: 10)
[05:44:08 -11379.814462] SLOW spr round 9 (radius: 5)
[05:44:37 -11378.354272] SLOW spr round 10 (radius: 5)
[05:45:02 -11378.354022] SLOW spr round 11 (radius: 10)
[05:45:24 -11377.882442] SLOW spr round 12 (radius: 5)
[05:45:52 -11377.867060] SLOW spr round 13 (radius: 10)
[05:46:17 -11377.866597] SLOW spr round 14 (radius: 15)
[05:46:52 -11377.107256] SLOW spr round 15 (radius: 5)
[05:47:21 -11377.107068] SLOW spr round 16 (radius: 10)
[05:47:47 -11377.106884] SLOW spr round 17 (radius: 15)
[05:48:21 -11376.777678] SLOW spr round 18 (radius: 5)
[05:48:51 -11374.201275] SLOW spr round 19 (radius: 5)
[05:49:17 -11374.199752] SLOW spr round 20 (radius: 10)
[05:49:40 -11374.199615] SLOW spr round 21 (radius: 15)
[05:50:15 -11373.754749] SLOW spr round 22 (radius: 5)
[05:50:45 -11371.609849] SLOW spr round 23 (radius: 5)
[05:51:11 -11371.596541] SLOW spr round 24 (radius: 10)
[05:51:34 -11371.596458] SLOW spr round 25 (radius: 15)
[05:52:09 -11371.311440] SLOW spr round 26 (radius: 5)
[05:52:38 -11371.311287] SLOW spr round 27 (radius: 10)
[05:53:03 -11371.311242] SLOW spr round 28 (radius: 15)
[05:53:35 -11371.311226] SLOW spr round 29 (radius: 20)
[05:54:16 -11371.311219] SLOW spr round 30 (radius: 25)
[05:54:58 -11367.430146] SLOW spr round 31 (radius: 5)
[05:55:28 -11365.773557] SLOW spr round 32 (radius: 5)
[05:55:54 -11365.773456] SLOW spr round 33 (radius: 10)
[05:56:17 -11365.773448] SLOW spr round 34 (radius: 15)
[05:56:50 -11365.773445] SLOW spr round 35 (radius: 20)
[05:57:29 -11365.773444] SLOW spr round 36 (radius: 25)
[05:58:11 -11365.773443] Model parameter optimization (eps = 0.100000)

[05:58:14] ML tree search #16, logLikelihood: -11365.744371

[05:58:14 -42557.139596] Initial branch length optimization
[05:58:15 -34660.601582] Model parameter optimization (eps = 10.000000)
[05:58:25 -34560.828375] AUTODETECT spr round 1 (radius: 5)
[05:58:46 -24616.268623] AUTODETECT spr round 2 (radius: 10)
[05:59:10 -18859.777538] AUTODETECT spr round 3 (radius: 15)
[05:59:38 -15275.828100] AUTODETECT spr round 4 (radius: 20)
[06:00:07 -13884.286727] AUTODETECT spr round 5 (radius: 25)
[06:00:40 -13649.315575] SPR radius for FAST iterations: 25 (autodetect)
[06:00:40 -13649.315575] Model parameter optimization (eps = 3.000000)
[06:00:48 -13597.814226] FAST spr round 1 (radius: 25)
[06:01:13 -11633.188724] FAST spr round 2 (radius: 25)
[06:01:33 -11423.942071] FAST spr round 3 (radius: 25)
[06:01:52 -11407.664317] FAST spr round 4 (radius: 25)
[06:02:09 -11407.281723] FAST spr round 5 (radius: 25)
[06:02:26 -11407.281559] Model parameter optimization (eps = 1.000000)
[06:02:32 -11405.070611] SLOW spr round 1 (radius: 5)
[06:02:55 -11402.821327] SLOW spr round 2 (radius: 5)
[06:03:19 -11401.137412] SLOW spr round 3 (radius: 5)
[06:03:42 -11401.136579] SLOW spr round 4 (radius: 10)
[06:04:05 -11401.136386] SLOW spr round 5 (radius: 15)
[06:04:37 -11397.146115] SLOW spr round 6 (radius: 5)
[06:05:08 -11396.127463] SLOW spr round 7 (radius: 5)
[06:05:34 -11395.274856] SLOW spr round 8 (radius: 5)
[06:05:57 -11395.273986] SLOW spr round 9 (radius: 10)
[06:06:20 -11395.273934] SLOW spr round 10 (radius: 15)
[06:06:52 -11394.257697] SLOW spr round 11 (radius: 5)
[06:07:21 -11394.247920] SLOW spr round 12 (radius: 10)
[06:07:47 -11394.247017] SLOW spr round 13 (radius: 15)
[06:08:17 -11394.202839] SLOW spr round 14 (radius: 20)
[06:08:50 -11394.202771] SLOW spr round 15 (radius: 25)
[06:09:25 -11387.697617] SLOW spr round 16 (radius: 5)
[06:09:56 -11387.539749] SLOW spr round 17 (radius: 5)
[06:10:23 -11387.539705] SLOW spr round 18 (radius: 10)
[06:10:46 -11387.539705] SLOW spr round 19 (radius: 15)
[06:11:17 -11387.539705] SLOW spr round 20 (radius: 20)
[06:11:52 -11387.539705] SLOW spr round 21 (radius: 25)
[06:12:29 -11386.711501] SLOW spr round 22 (radius: 5)
[06:13:00 -11386.711323] SLOW spr round 23 (radius: 10)
[06:13:27 -11386.711322] SLOW spr round 24 (radius: 15)
[06:13:56 -11386.711322] SLOW spr round 25 (radius: 20)
[06:14:30 -11386.711322] SLOW spr round 26 (radius: 25)
[06:15:07 -11386.711322] Model parameter optimization (eps = 0.100000)

[06:15:12] ML tree search #17, logLikelihood: -11385.306457

[06:15:12 -42703.177516] Initial branch length optimization
[06:15:12 -34729.549011] Model parameter optimization (eps = 10.000000)
[06:15:20 -34625.279967] AUTODETECT spr round 1 (radius: 5)
[06:15:42 -24835.071524] AUTODETECT spr round 2 (radius: 10)
[06:16:05 -19021.061235] AUTODETECT spr round 3 (radius: 15)
[06:16:32 -15645.011123] AUTODETECT spr round 4 (radius: 20)
[06:17:05 -13714.230612] AUTODETECT spr round 5 (radius: 25)
[06:17:36 -13384.343760] SPR radius for FAST iterations: 25 (autodetect)
[06:17:36 -13384.343760] Model parameter optimization (eps = 3.000000)
[06:17:43 -13350.664973] FAST spr round 1 (radius: 25)
[06:18:06 -11734.616008] FAST spr round 2 (radius: 25)
[06:18:27 -11614.052427] FAST spr round 3 (radius: 25)
[06:18:46 -11602.848983] FAST spr round 4 (radius: 25)
[06:19:04 -11597.590894] FAST spr round 5 (radius: 25)
[06:19:21 -11596.223994] FAST spr round 6 (radius: 25)
[06:19:38 -11596.222752] Model parameter optimization (eps = 1.000000)
[06:19:43 -11594.812741] SLOW spr round 1 (radius: 5)
[06:20:06 -11591.539284] SLOW spr round 2 (radius: 5)
[06:20:28 -11591.539048] SLOW spr round 3 (radius: 10)
[06:20:50 -11591.197759] SLOW spr round 4 (radius: 5)
[06:21:19 -11589.416459] SLOW spr round 5 (radius: 5)
[06:21:44 -11589.416457] SLOW spr round 6 (radius: 10)
[06:22:07 -11589.416457] SLOW spr round 7 (radius: 15)
[06:22:40 -11588.327060] SLOW spr round 8 (radius: 5)
[06:23:09 -11588.326527] SLOW spr round 9 (radius: 10)
[06:23:35 -11588.326496] SLOW spr round 10 (radius: 15)
[06:24:06 -11587.726507] SLOW spr round 11 (radius: 5)
[06:24:36 -11587.689817] SLOW spr round 12 (radius: 10)
[06:25:01 -11586.997795] SLOW spr round 13 (radius: 5)
[06:25:29 -11586.952470] SLOW spr round 14 (radius: 10)
[06:25:53 -11586.952358] SLOW spr round 15 (radius: 15)
[06:26:25 -11586.952357] SLOW spr round 16 (radius: 20)
[06:27:01 -11584.271977] SLOW spr round 17 (radius: 5)
[06:27:31 -11582.636557] SLOW spr round 18 (radius: 5)
[06:27:56 -11582.636376] SLOW spr round 19 (radius: 10)
[06:28:20 -11582.636374] SLOW spr round 20 (radius: 15)
[06:28:51 -11582.636374] SLOW spr round 21 (radius: 20)
[06:29:27 -11582.635769] SLOW spr round 22 (radius: 25)
[06:30:05 -11548.719521] SLOW spr round 23 (radius: 5)
[06:30:36 -11466.309321] SLOW spr round 24 (radius: 5)
[06:31:03 -11451.574493] SLOW spr round 25 (radius: 5)
[06:31:28 -11449.632077] SLOW spr round 26 (radius: 5)
[06:31:51 -11449.631366] SLOW spr round 27 (radius: 10)
[06:32:13 -11449.631359] SLOW spr round 28 (radius: 15)
[06:32:45 -11447.037455] SLOW spr round 29 (radius: 5)
[06:33:15 -11442.928596] SLOW spr round 30 (radius: 5)
[06:33:41 -11442.927798] SLOW spr round 31 (radius: 10)
[06:34:03 -11442.927768] SLOW spr round 32 (radius: 15)
[06:34:36 -11441.038554] SLOW spr round 33 (radius: 5)
[06:35:06 -11441.036876] SLOW spr round 34 (radius: 10)
[06:35:31 -11441.036668] SLOW spr round 35 (radius: 15)
[06:36:02 -11440.542771] SLOW spr round 36 (radius: 5)
[06:36:31 -11440.542763] SLOW spr round 37 (radius: 10)
[06:36:58 -11438.516580] SLOW spr round 38 (radius: 5)
[06:37:26 -11436.594794] SLOW spr round 39 (radius: 5)
[06:37:52 -11436.502978] SLOW spr round 40 (radius: 10)
[06:38:14 -11436.502888] SLOW spr round 41 (radius: 15)
[06:38:47 -11436.502886] SLOW spr round 42 (radius: 20)
[06:39:25 -11436.502886] SLOW spr round 43 (radius: 25)
[06:40:05 -11435.985472] SLOW spr round 44 (radius: 5)
[06:40:36 -11435.950190] SLOW spr round 45 (radius: 10)
[06:41:02 -11435.949289] SLOW spr round 46 (radius: 15)
[06:41:33 -11435.949283] SLOW spr round 47 (radius: 20)
[06:42:12 -11435.949283] SLOW spr round 48 (radius: 25)
[06:42:52 -11435.949283] Model parameter optimization (eps = 0.100000)

[06:42:55] ML tree search #18, logLikelihood: -11435.647251

[06:42:55 -42508.642684] Initial branch length optimization
[06:42:56 -34623.567022] Model parameter optimization (eps = 10.000000)
[06:43:05 -34537.627634] AUTODETECT spr round 1 (radius: 5)
[06:43:27 -24651.589756] AUTODETECT spr round 2 (radius: 10)
[06:43:50 -19330.440468] AUTODETECT spr round 3 (radius: 15)
[06:44:17 -15715.691548] AUTODETECT spr round 4 (radius: 20)
[06:44:51 -13865.449890] AUTODETECT spr round 5 (radius: 25)
[06:45:20 -13417.460587] SPR radius for FAST iterations: 25 (autodetect)
[06:45:20 -13417.460587] Model parameter optimization (eps = 3.000000)
[06:45:26 -13364.877749] FAST spr round 1 (radius: 25)
[06:45:50 -11545.807615] FAST spr round 2 (radius: 25)
[06:46:10 -11425.347572] FAST spr round 3 (radius: 25)
[06:46:29 -11412.031747] FAST spr round 4 (radius: 25)
[06:46:47 -11411.644104] FAST spr round 5 (radius: 25)
[06:47:04 -11411.643913] Model parameter optimization (eps = 1.000000)
[06:47:09 -11410.262242] SLOW spr round 1 (radius: 5)
[06:47:32 -11407.654282] SLOW spr round 2 (radius: 5)
[06:47:55 -11407.571392] SLOW spr round 3 (radius: 10)
[06:48:17 -11404.871807] SLOW spr round 4 (radius: 5)
[06:48:46 -11404.871647] SLOW spr round 5 (radius: 10)
[06:49:10 -11404.871642] SLOW spr round 6 (radius: 15)
[06:49:42 -11402.497118] SLOW spr round 7 (radius: 5)
[06:50:12 -11401.312935] SLOW spr round 8 (radius: 5)
[06:50:37 -11401.312932] SLOW spr round 9 (radius: 10)
[06:51:00 -11401.312932] SLOW spr round 10 (radius: 15)
[06:51:33 -11401.312932] SLOW spr round 11 (radius: 20)
[06:52:14 -11399.277027] SLOW spr round 12 (radius: 5)
[06:52:44 -11399.044270] SLOW spr round 13 (radius: 5)
[06:53:10 -11399.044169] SLOW spr round 14 (radius: 10)
[06:53:33 -11399.044164] SLOW spr round 15 (radius: 15)
[06:54:06 -11399.044164] SLOW spr round 16 (radius: 20)
[06:54:46 -11399.044164] SLOW spr round 17 (radius: 25)
[06:55:30 -11398.195175] SLOW spr round 18 (radius: 5)
[06:56:00 -11398.195125] SLOW spr round 19 (radius: 10)
[06:56:26 -11398.195123] SLOW spr round 20 (radius: 15)
[06:56:58 -11398.195123] SLOW spr round 21 (radius: 20)
[06:57:38 -11398.195123] SLOW spr round 22 (radius: 25)
[06:58:22 -11398.195123] Model parameter optimization (eps = 0.100000)

[06:58:26] ML tree search #19, logLikelihood: -11398.021075

[06:58:26 -42401.290987] Initial branch length optimization
[06:58:26 -34589.548565] Model parameter optimization (eps = 10.000000)
[06:58:37 -34479.891833] AUTODETECT spr round 1 (radius: 5)
[06:58:58 -24826.266514] AUTODETECT spr round 2 (radius: 10)
[06:59:21 -19260.628652] AUTODETECT spr round 3 (radius: 15)
[06:59:47 -16133.522664] AUTODETECT spr round 4 (radius: 20)
[07:00:15 -15131.156619] AUTODETECT spr round 5 (radius: 25)
[07:00:46 -14020.930046] SPR radius for FAST iterations: 25 (autodetect)
[07:00:46 -14020.930046] Model parameter optimization (eps = 3.000000)
[07:00:54 -13979.838536] FAST spr round 1 (radius: 25)
[07:01:18 -11524.899022] FAST spr round 2 (radius: 25)
[07:01:37 -11387.911019] FAST spr round 3 (radius: 25)
[07:01:56 -11368.974198] FAST spr round 4 (radius: 25)
[07:02:14 -11363.341165] FAST spr round 5 (radius: 25)
[07:02:31 -11363.006596] FAST spr round 6 (radius: 25)
[07:02:48 -11363.006026] Model parameter optimization (eps = 1.000000)
[07:02:51 -11362.025185] SLOW spr round 1 (radius: 5)
[07:03:15 -11360.803420] SLOW spr round 2 (radius: 5)
[07:03:37 -11360.803292] SLOW spr round 3 (radius: 10)
[07:03:59 -11358.987455] SLOW spr round 4 (radius: 5)
[07:04:30 -11358.826702] SLOW spr round 5 (radius: 5)
[07:04:59 -11358.826698] SLOW spr round 6 (radius: 10)
[07:05:25 -11358.826698] SLOW spr round 7 (radius: 15)
[07:06:04 -11358.640394] SLOW spr round 8 (radius: 5)
[07:06:39 -11358.639909] SLOW spr round 9 (radius: 10)
[07:07:09 -11358.639899] SLOW spr round 10 (radius: 15)
[07:07:45 -11358.639898] SLOW spr round 11 (radius: 20)
[07:08:31 -11356.439570] SLOW spr round 12 (radius: 5)
[07:09:07 -11351.880569] SLOW spr round 13 (radius: 5)
[07:09:38 -11351.326845] SLOW spr round 14 (radius: 5)
[07:10:05 -11351.326845] SLOW spr round 15 (radius: 10)
[07:10:30 -11350.261059] SLOW spr round 16 (radius: 5)
[07:11:03 -11350.260776] SLOW spr round 17 (radius: 10)
[07:11:28 -11350.260773] SLOW spr round 18 (radius: 15)
[07:11:59 -11350.260773] SLOW spr round 19 (radius: 20)
[07:12:36 -11350.260773] SLOW spr round 20 (radius: 25)
[07:13:17 -11350.260773] Model parameter optimization (eps = 0.100000)

[07:13:19] ML tree search #20, logLikelihood: -11350.209810


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.139310,0.204335) (0.492609,0.611663) (0.231718,1.177632) (0.136362,2.913891) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -11343.431733

AIC score: 24772.863466 / AICc score: 2202556.863466 / BIC score: 27040.749388
Free parameters (model + branch lengths): 1043

WARNING: Number of free parameters (K=1043) is larger than alignment size (n=65).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WVB6/3_mltree/Q8WVB6.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WVB6/3_mltree/Q8WVB6.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WVB6/3_mltree/Q8WVB6.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WVB6/3_mltree/Q8WVB6.raxml.log

Analysis started: 05-Jul-2021 05:57:15 / finished: 05-Jul-2021 13:10:35

Elapsed time: 25999.692 seconds

Consumed energy: 1409.543 Wh (= 7 km in an electric car, or 35 km with an e-scooter!)