RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 07-Jul-2021 04:55:45 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WUY3/2_msa/Q8WUY3_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WUY3/3_mltree/Q8WUY3 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WUY3/2_msa/Q8WUY3_trimmed_msa.fasta [00:00:00] Loaded alignment with 973 taxa and 75 sites WARNING: Sequences tr_B4QQ28_B4QQ28_DROSI_7240 and tr_Q9VZJ4_Q9VZJ4_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QQ28_B4QQ28_DROSI_7240 and tr_B4HTY4_B4HTY4_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QQ28_B4QQ28_DROSI_7240 and tr_B5DPL4_B5DPL4_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QQ28_B4QQ28_DROSI_7240 and tr_B4HBP4_B4HBP4_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4QQ28_B4QQ28_DROSI_7240 and tr_B4LED9_B4LED9_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QQ28_B4QQ28_DROSI_7240 and tr_A0A0M4ELW9_A0A0M4ELW9_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4QQ28_B4QQ28_DROSI_7240 and tr_A0A1W4W7G6_A0A1W4W7G6_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4QR62_B4QR62_DROSI_7240 and sp_Q9VTU3_RG68F_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QR62_B4QR62_DROSI_7240 and tr_B4HFJ2_B4HFJ2_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QR62_B4QR62_DROSI_7240 and tr_A0A1W4UGP8_A0A1W4UGP8_DROFC_30025 are exactly identical! WARNING: Sequences tr_E9H2N4_E9H2N4_DAPPU_6669 and tr_A0A164SR63_A0A164SR63_9CRUS_35525 are exactly identical! WARNING: Sequences tr_F1QHC0_F1QHC0_DANRE_7955 and tr_A0A3B1IE95_A0A3B1IE95_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A1D5PFF7_A0A1D5PFF7_CHICK_9031 and tr_G1MZI3_G1MZI3_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PFF7_A0A1D5PFF7_CHICK_9031 and tr_A0A093I9T3_A0A093I9T3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PFF7_A0A1D5PFF7_CHICK_9031 and tr_A0A226MSR4_A0A226MSR4_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PFF7_A0A1D5PFF7_CHICK_9031 and tr_A0A226PRN1_A0A226PRN1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_G1NEQ2_G1NEQ2_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_H0ZK09_H0ZK09_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_U3JUT1_U3JUT1_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_R0K6N9_R0K6N9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A0Q3X8C8_A0A0Q3X8C8_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A091JT70_A0A091JT70_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A091VVS7_A0A091VVS7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A087QYL7_A0A087QYL7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A093HU98_A0A093HU98_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A091W1K3_A0A091W1K3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A0A0A1Q2_A0A0A0A1Q2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A2I0MPU8_A0A2I0MPU8_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A093IE07_A0A093IE07_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A091ICL1_A0A091ICL1_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A1V4KEP5_A0A1V4KEP5_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A218V9F9_A0A218V9F9_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A226MQS6_A0A226MQS6_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PN07_A0A1D5PN07_CHICK_9031 and tr_A0A226PRD5_A0A226PRD5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_U3IKH4_U3IKH4_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A091IXP9_A0A091IXP9_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A093S0T3_A0A093S0T3_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A091VXR9_A0A091VXR9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A087RDP7_A0A087RDP7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A093H1M2_A0A093H1M2_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A099ZV22_A0A099ZV22_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A091FZ19_A0A091FZ19_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A099ZWW3_A0A099ZWW3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A2I0MFZ9_A0A2I0MFZ9_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A1V4KCW6_A0A1V4KCW6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A218UP37_A0A218UP37_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A226MNZ5_A0A226MNZ5_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PYP1_A0A1D5PYP1_CHICK_9031 and tr_A0A226PQD3_A0A226PQD3_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_K7FLW4_K7FLW4_PELSI_13735 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_H0YRY1_H0YRY1_TAEGU_59729 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_U3JDL3_U3JDL3_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A151NWC4_A0A151NWC4_ALLMI_8496 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A0Q3MJU7_A0A0Q3MJU7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A091F3P6_A0A091F3P6_CORBR_85066 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A091J0Q7_A0A091J0Q7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A093PWD0_A0A093PWD0_9PASS_328815 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A091VQX5_A0A091VQX5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A087R5N7_A0A087R5N7_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A091WA44_A0A091WA44_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A099ZA39_A0A099ZA39_TINGU_94827 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A091FPP7_A0A091FPP7_9AVES_55661 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A2I0LPU9_A0A2I0LPU9_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A093GI09_A0A093GI09_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A091ILW6_A0A091ILW6_CALAN_9244 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A1U7RRH0_A0A1U7RRH0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_E1BVX4_E1BVX4_CHICK_9031 and tr_A0A1V4KRQ8_A0A1V4KRQ8_PATFA_372326 are exactly identical! WARNING: Sequences sp_O54940_BNIP2_MOUSE_10090 and tr_A0A0G2K1P3_A0A0G2K1P3_RAT_10116 are exactly identical! WARNING: Sequences sp_O54940_BNIP2_MOUSE_10090 and tr_A0A3Q0CZK7_A0A3Q0CZK7_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_M3YM66_M3YM66_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_G3I7N3_G3I7N3_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_G1SVE3_G1SVE3_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_E2RN40_E2RN40_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_F7DKJ3_F7DKJ3_ORNAN_9258 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_F6S0L0_F6S0L0_MONDO_13616 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_F7BGX9_F7BGX9_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_W5PSF0_W5PSF0_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and sp_Q5BJR4_PRUN2_RAT_10116 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_H0XVG2_H0XVG2_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_G3TL11_G3TL11_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_G3VDX6_G3VDX6_SARHA_9305 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A2R8M6H8_A0A2R8M6H8_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A286ZRA1_A0A286ZRA1_PIG_9823 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_F1MFL0_F1MFL0_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_L5K6C2_L5K6C2_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A337SHY1_A0A337SHY1_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A091E5B4_A0A091E5B4_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A151M8E6_A0A151M8E6_ALLMI_8496 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A1S3FBF9_A0A1S3FBF9_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A3Q0DTI2_A0A3Q0DTI2_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A3Q0FM95_A0A3Q0FM95_ALLSI_38654 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A3Q0CKC3_A0A3Q0CKC3_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A2U4BAU4_A0A2U4BAU4_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A2U3ZC72_A0A2U3ZC72_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A2Y9RPM1_A0A2Y9RPM1_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A2Y9K5B1_A0A2Y9K5B1_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A2Y9N3C7_A0A2Y9N3C7_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A2Y9T1F7_A0A2Y9T1F7_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q52KR3_PRUN2_MOUSE_10090 and tr_A0A384A4U8_A0A384A4U8_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_M3Y2A7_M3Y2A7_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_G3GYJ1_G3GYJ1_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_G3RT66_G3RT66_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_H2NDK7_H2NDK7_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_G1TB18_G1TB18_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A4GT58_A4GT58_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_H2Q3I0_H2Q3I0_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_F6PY00_F6PY00_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_D4A6C5_D4A6C5_RAT_10116 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_I3MY85_I3MY85_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_H0XAX7_H0XAX7_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_H0VMU7_H0VMU7_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and sp_Q07960_RHG01_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_F6T0E0_F6T0E0_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_G3TEJ9_G3TEJ9_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_U3FV86_U3FV86_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_F1SIA4_F1SIA4_PIG_9823 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_G1LK05_G1LK05_AILME_9646 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_G7PQA9_G7PQA9_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_M3WJ76_M3WJ76_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A096MXU4_A0A096MXU4_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A0D9R051_A0A0D9R051_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A1S3W614_A0A1S3W614_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A1S3GB42_A0A1S3GB42_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A3Q0D3Q7_A0A3Q0D3Q7_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A2K5NY60_A0A2K5NY60_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A2K6E3J3_A0A2K6E3J3_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A2K5YJ75_A0A2K5YJ75_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A2R8ZXZ2_A0A2R8ZXZ2_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A2Y9E680_A0A2Y9E680_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A2Y9PXF7_A0A2Y9PXF7_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A384CWR4_A0A384CWR4_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q5FWK3_RHG01_MOUSE_10090 and tr_A0A384A1I0_A0A384A1I0_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q8BHE3_ATCAY_MOUSE_10090 and tr_G3HSL1_G3HSL1_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q8BHE3_ATCAY_MOUSE_10090 and sp_Q1M168_ATCAY_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8BHE3_ATCAY_MOUSE_10090 and tr_A0A1U8CIX9_A0A1U8CIX9_MESAU_10036 are exactly identical! WARNING: Sequences tr_W5JU90_W5JU90_ANODA_43151 and tr_Q7Q710_Q7Q710_ANOGA_7165 are exactly identical! WARNING: Sequences tr_W5JU90_W5JU90_ANODA_43151 and tr_Q0IFV0_Q0IFV0_AEDAE_7159 are exactly identical! WARNING: Sequences tr_W5JU90_W5JU90_ANODA_43151 and tr_Q0IFV1_Q0IFV1_AEDAE_7159 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_G1PGP3_G1PGP3_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_H9G750_H9G750_ANOCA_28377 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_G1SQN6_G1SQN6_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_F1P628_F1P628_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_F6U0H2_F6U0H2_MONDO_13616 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_F6V7T0_F6V7T0_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_W5QI33_W5QI33_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A287D452_A0A287D452_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_H0WVI5_H0WVI5_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_H0V4C9_H0V4C9_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_G5AWC5_G5AWC5_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_G3WFE1_G3WFE1_SARHA_9305 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_F1S071_F1S071_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_G1LGK6_G1LGK6_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_F1N6R4_F1N6R4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_L5K4H7_L5K4H7_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A2I2V1Y6_A0A2I2V1Y6_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A091D6B0_A0A091D6B0_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A1S3WQB0_A0A1S3WQB0_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A1U7UBC7_A0A1U7UBC7_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A2U4CC15_A0A2U4CC15_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A2U3ZM79_A0A2U3ZM79_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A2U3YB40_A0A2U3YB40_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A2Y9K337_A0A2Y9K337_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A2Y9NMX0_A0A2Y9NMX0_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A2Y9T6U7_A0A2Y9T6U7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A384DC00_A0A384DC00_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XP01_M3XP01_MUSPF_9669 and tr_A0A383YTR6_A0A383YTR6_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3XYM0_M3XYM0_MUSPF_9669 and tr_A0A2Y9L7C0_A0A2Y9L7C0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_E2QWD7_E2QWD7_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_F7DR66_F7DR66_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_W5PP56_W5PP56_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_H0XGZ0_H0XGZ0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_G1LHG7_G1LHG7_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_A2VE75_A2VE75_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_L5L7L7_L5L7L7_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_A0A337SBF3_A0A337SBF3_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_A0A2U3VKR4_A0A2U3VKR4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_A0A2U3Y593_A0A2U3Y593_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_A0A2Y9LIQ1_A0A2Y9LIQ1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_A0A2Y9EVK4_A0A2Y9EVK4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XZB8_M3XZB8_MUSPF_9669 and tr_A0A383Z2X6_A0A383Z2X6_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A3B3HWP8_A0A3B3HWP8_ORYLA_8090 and tr_A0A2U9BW32_A0A2U9BW32_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2MSS5_H2MSS5_ORYLA_8090 and tr_A0A2U9C2U7_A0A2U9C2U7_SCOMX_52904 are exactly identical! WARNING: Sequences tr_E3S6A6_E3S6A6_PYRTT_861557 and tr_B2W1P2_B2W1P2_PYRTR_426418 are exactly identical! WARNING: Sequences tr_E3S6A6_E3S6A6_PYRTT_861557 and tr_A0A2W1GKD5_A0A2W1GKD5_9PLEO_45151 are exactly identical! WARNING: Sequences tr_B4IWN0_B4IWN0_DROGR_7222 and tr_A0A0Q9WI61_A0A0Q9WI61_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4IWN0_B4IWN0_DROGR_7222 and tr_A0A0Q9XIW3_A0A0Q9XIW3_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4IYX7_B4IYX7_DROGR_7222 and tr_B4N6A7_B4N6A7_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4IYX7_B4IYX7_DROGR_7222 and tr_B4KWJ1_B4KWJ1_DROMO_7230 are exactly identical! WARNING: Sequences tr_G1QNV7_G1QNV7_NOMLE_61853 and tr_G3QLH9_G3QLH9_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QNV7_G1QNV7_NOMLE_61853 and tr_H2PSF8_H2PSF8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QNV7_G1QNV7_NOMLE_61853 and sp_Q5R4Q8_PRUN2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QNV7_G1QNV7_NOMLE_61853 and tr_A0A2I3TIP7_A0A2I3TIP7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QNV7_G1QNV7_NOMLE_61853 and sp_Q8WUY3_PRUN2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QNV7_G1QNV7_NOMLE_61853 and tr_A0A091HMX9_A0A091HMX9_CALAN_9244 are exactly identical! WARNING: Sequences tr_G1QNV7_G1QNV7_NOMLE_61853 and tr_A0A2R9AC58_A0A2R9AC58_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QRI5_G1QRI5_NOMLE_61853 and tr_G3QVC2_G3QVC2_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QRI5_G1QRI5_NOMLE_61853 and tr_H2NX13_H2NX13_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QRI5_G1QRI5_NOMLE_61853 and sp_Q86WG3_ATCAY_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QRI5_G1QRI5_NOMLE_61853 and tr_F6YH87_F6YH87_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QRI5_G1QRI5_NOMLE_61853 and tr_I3L5K2_I3L5K2_PIG_9823 are exactly identical! WARNING: Sequences tr_G1QRI5_G1QRI5_NOMLE_61853 and tr_G8F6F4_G8F6F4_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QRI5_G1QRI5_NOMLE_61853 and tr_A0A0D9RER9_A0A0D9RER9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QRI5_G1QRI5_NOMLE_61853 and tr_A0A3Q0DHF4_A0A3Q0DHF4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1QRI5_G1QRI5_NOMLE_61853 and tr_A0A2K5MYX8_A0A2K5MYX8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QRI5_G1QRI5_NOMLE_61853 and tr_A0A2K6B665_A0A2K6B665_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QRI5_G1QRI5_NOMLE_61853 and tr_A0A2K5ZC97_A0A2K5ZC97_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1PXB3_G1PXB3_MYOLU_59463 and tr_W5P171_W5P171_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1PXB3_G1PXB3_MYOLU_59463 and tr_F6RWK1_F6RWK1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_H2NNE1_H2NNE1_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_H2Q9J3_H2Q9J3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and sp_Q12982_BNIP2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_F6W9J6_F6W9J6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_G3TCR9_G3TCR9_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_H0Z4T6_H0Z4T6_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_F7DFT2_F7DFT2_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_G7PBK9_G7PBK9_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_U3KDJ5_U3KDJ5_FICAL_59894 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_U3IF57_U3IF57_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A096NM86_A0A096NM86_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A0D9RI03_A0A0D9RI03_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A091EUM8_A0A091EUM8_CORBR_85066 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A091JHS4_A0A091JHS4_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A093SNX2_A0A093SNX2_9PASS_328815 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A091VH80_A0A091VH80_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A087RIH8_A0A087RIH8_APTFO_9233 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A093K2F9_A0A093K2F9_STRCA_441894 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A091WRQ6_A0A091WRQ6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A099Z8A1_A0A099Z8A1_TINGU_94827 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A0A0ALP3_A0A0A0ALP3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A091HND7_A0A091HND7_CALAN_9244 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A218UYI0_A0A218UYI0_9PASE_299123 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A2K5N5R7_A0A2K5N5R7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A2K6AEP9_A0A2K6AEP9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A2R9C0T9_A0A2R9C0T9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QR12_G3QR12_GORGO_9595 and tr_A0A2Y9QPR9_A0A2Y9QPR9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H2N5X3_H2N5X3_PONAB_9601 and tr_H2R2V1_H2R2V1_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2N5X3_H2N5X3_PONAB_9601 and sp_Q7Z465_BNIPL_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2N5X3_H2N5X3_PONAB_9601 and tr_F6T7H0_F6T7H0_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2N5X3_H2N5X3_PONAB_9601 and tr_G8F5T5_G8F5T5_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2N5X3_H2N5X3_PONAB_9601 and tr_A0A096NG36_A0A096NG36_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2N5X3_H2N5X3_PONAB_9601 and tr_A0A1U7SR91_A0A1U7SR91_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H2N5X3_H2N5X3_PONAB_9601 and tr_A0A2K5NCW5_A0A2K5NCW5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0R3P3H6_A0A0R3P3H6_DROPS_46245 and tr_B4GR62_B4GR62_DROPE_7234 are exactly identical! WARNING: Sequences tr_H2R2R4_H2R2R4_PANTR_9598 and tr_A0A2R9C6I2_A0A2R9C6I2_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7C1K7_K7C1K7_PANTR_9598 and sp_Q86TP1_PRUN1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_K7C1K7_K7C1K7_PANTR_9598 and tr_A0A2R9AX72_A0A2R9AX72_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6WLU0_F6WLU0_MONDO_13616 and tr_G3VVB1_G3VVB1_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5QID1_W5QID1_SHEEP_9940 and tr_Q17QP4_Q17QP4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A3B5Q1Y1_A0A3B5Q1Y1_XIPMA_8083 and tr_A0A087XXL2_A0A087XXL2_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QWE6_A0A3B5QWE6_XIPMA_8083 and tr_A0A087YKA1_A0A087YKA1_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QXX6_A0A3B5QXX6_XIPMA_8083 and tr_A0A087X5Z9_A0A087X5Z9_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4A5R4_M4A5R4_XIPMA_8083 and tr_A0A087YLX1_A0A087YLX1_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088A5N3_A0A088A5N3_APIME_7460 and tr_A0A2A3E5C3_A0A2A3E5C3_APICC_94128 are exactly identical! WARNING: Sequences tr_I3J0E1_I3J0E1_ORENI_8128 and tr_G3P922_G3P922_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A0H5S4P2_A0A0H5S4P2_BRUMA_6279 and tr_A0A0N4TVV2_A0A0N4TVV2_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0H5S4P2_A0A0H5S4P2_BRUMA_6279 and tr_A0A0R3R2V4_A0A0R3R2V4_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A1D5QMC1_A0A1D5QMC1_MACMU_9544 and tr_G7PSK4_G7PSK4_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5QMC1_A0A1D5QMC1_MACMU_9544 and tr_A0A096P1T8_A0A096P1T8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5QMC1_A0A1D5QMC1_MACMU_9544 and tr_A0A2K5NHQ6_A0A2K5NHQ6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5QMC1_A0A1D5QMC1_MACMU_9544 and tr_A0A2K6CS71_A0A2K6CS71_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5QMC1_A0A1D5QMC1_MACMU_9544 and tr_A0A2K5Z926_A0A2K5Z926_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6T7J4_F6T7J4_MACMU_9544 and tr_G8F5T6_G8F5T6_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6T7J4_F6T7J4_MACMU_9544 and tr_A0A096NWS3_A0A096NWS3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6T7J4_F6T7J4_MACMU_9544 and tr_A0A0D9RZJ9_A0A0D9RZJ9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6T7J4_F6T7J4_MACMU_9544 and tr_A0A2K5P5J4_A0A2K5P5J4_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6T7J4_F6T7J4_MACMU_9544 and tr_A0A2K6BPQ0_A0A2K6BPQ0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6T7J4_F6T7J4_MACMU_9544 and tr_A0A2K5ZS61_A0A2K5ZS61_MANLE_9568 are exactly identical! WARNING: Sequences tr_G5ATC2_G5ATC2_HETGA_10181 and tr_A0A1U7U484_A0A1U7U484_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G5BBD4_G5BBD4_HETGA_10181 and tr_G3T9B7_G3T9B7_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F4WSZ2_F4WSZ2_ACREC_103372 and tr_A0A151WHP6_A0A151WHP6_9HYME_64791 are exactly identical! WARNING: Sequences tr_F4WSZ2_F4WSZ2_ACREC_103372 and tr_A0A151IUG8_A0A151IUG8_9HYME_471704 are exactly identical! WARNING: Sequences tr_F4WSZ2_F4WSZ2_ACREC_103372 and tr_A0A195AYU4_A0A195AYU4_9HYME_520822 are exactly identical! WARNING: Sequences tr_F4WSZ2_F4WSZ2_ACREC_103372 and tr_A0A195F6L2_A0A195F6L2_9HYME_34720 are exactly identical! WARNING: Sequences tr_G0MV85_G0MV85_CAEBE_135651 and tr_G0PEG3_G0PEG3_CAEBE_135651 are exactly identical! WARNING: Sequences tr_G0MV85_G0MV85_CAEBE_135651 and tr_E3LF89_E3LF89_CAERE_31234 are exactly identical! WARNING: Sequences tr_G0MV85_G0MV85_CAEBE_135651 and tr_A0A1I7T9D2_A0A1I7T9D2_9PELO_1561998 are exactly identical! WARNING: Sequences tr_G0MV85_G0MV85_CAEBE_135651 and tr_A0A261BMX2_A0A261BMX2_9PELO_1503980 are exactly identical! WARNING: Sequences tr_F6Z459_F6Z459_XENTR_8364 and tr_A0A1L8HMU8_A0A1L8HMU8_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q0IHU9_PRUN2_XENTR_8364 and tr_A0A1L8HP80_A0A1L8HP80_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q0IHU9_PRUN2_XENTR_8364 and tr_A0A1L8HYD3_A0A1L8HYD3_XENLA_8355 are exactly identical! WARNING: Sequences tr_A8WTA3_A8WTA3_CAEBR_6238 and tr_A0A2G5V2T2_A0A2G5V2T2_9PELO_1611254 are exactly identical! WARNING: Sequences tr_G1L2I5_G1L2I5_AILME_9646 and tr_A0A384CGD0_A0A384CGD0_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1L2J9_G1L2J9_AILME_9646 and tr_A0A384CGI6_A0A384CGI6_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LA27_G1LA27_AILME_9646 and tr_A0A384C2Y2_A0A384C2Y2_URSMA_29073 are exactly identical! WARNING: Sequences tr_U3JKT7_U3JKT7_FICAL_59894 and tr_A0A093GG70_A0A093GG70_DRYPU_118200 are exactly identical! WARNING: Sequences tr_M2SSV8_M2SSV8_COCSN_665912 and tr_R0KC70_R0KC70_SETT2_671987 are exactly identical! WARNING: Sequences tr_M2SSV8_M2SSV8_COCSN_665912 and tr_M2TK23_M2TK23_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2SSV8_M2SSV8_COCSN_665912 and tr_W6Y9T8_W6Y9T8_COCCA_930089 are exactly identical! WARNING: Sequences tr_M2SSV8_M2SSV8_COCSN_665912 and tr_W6ZDX4_W6ZDX4_COCMI_930090 are exactly identical! WARNING: Sequences tr_M2SSV8_M2SSV8_COCSN_665912 and tr_A0A364NBX8_A0A364NBX8_9PLEO_183478 are exactly identical! WARNING: Sequences tr_V2WLZ3_V2WLZ3_MONRO_1381753 and tr_A0A0W0G547_A0A0W0G547_9AGAR_221103 are exactly identical! WARNING: Sequences tr_A0A067R640_A0A067R640_ZOONE_136037 and tr_A0A2P8Z4T4_A0A2P8Z4T4_BLAGE_6973 are exactly identical! WARNING: Sequences tr_A0A087YCU3_A0A087YCU3_POEFO_48698 and tr_A0A087YCV3_A0A087YCV3_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A091CM33_A0A091CM33_FUKDA_885580 and tr_A0A2Y9FJN4_A0A2Y9FJN4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A0D9RZJ2_A0A0D9RZJ2_CHLSB_60711 and tr_A0A2R9AYZ3_A0A2R9AYZ3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A0A1N4I6_A0A0A1N4I6_9FUNG_58291 and tr_A0A0A1NKA8_A0A0A1NKA8_9FUNG_58291 are exactly identical! WARNING: Sequences tr_A0A0A1N4I6_A0A0A1N4I6_9FUNG_58291 and tr_A0A2G4SGJ4_A0A2G4SGJ4_9FUNG_1340429 are exactly identical! WARNING: Sequences tr_A0A0A1N4I6_A0A0A1N4I6_9FUNG_58291 and tr_A0A367JC03_A0A367JC03_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A151M564_A0A151M564_ALLMI_8496 and tr_A0A1U7S7U4_A0A1U7S7U4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MA28_A0A151MA28_ALLMI_8496 and tr_A0A1U7RTM2_A0A1U7RTM2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MB56_A0A151MB56_ALLMI_8496 and tr_A0A1U7SA63_A0A1U7SA63_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091ETA2_A0A091ETA2_CORBR_85066 and tr_A0A091F5W0_A0A091F5W0_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A0N0BEH2_A0A0N0BEH2_9HYME_166423 and tr_A0A0L7R9N4_A0A0L7R9N4_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A091IUG8_A0A091IUG8_EGRGA_188379 and tr_A0A093PK70_A0A093PK70_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091IUG8_A0A091IUG8_EGRGA_188379 and tr_A0A091V2I8_A0A091V2I8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IUG8_A0A091IUG8_EGRGA_188379 and tr_A0A087R1Q3_A0A087R1Q3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IUG8_A0A091IUG8_EGRGA_188379 and tr_A0A091VWE1_A0A091VWE1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091IUG8_A0A091IUG8_EGRGA_188379 and tr_A0A0A0A4E7_A0A0A0A4E7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091IUG8_A0A091IUG8_EGRGA_188379 and tr_A0A2I0MKP6_A0A2I0MKP6_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A091IUG8_A0A091IUG8_EGRGA_188379 and tr_A0A093GBL1_A0A093GBL1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091IUG8_A0A091IUG8_EGRGA_188379 and tr_A0A1V4K8K6_A0A1V4K8K6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A091JSC2_A0A091JSC2_EGRGA_188379 and tr_A0A091WG81_A0A091WG81_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A194R0T0_A0A194R0T0_PAPMA_76193 and tr_A0A194PZ62_A0A194PZ62_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A093PIA2_A0A093PIA2_9PASS_328815 and tr_A0A087RDP6_A0A087RDP6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A093PIA2_A0A093PIA2_9PASS_328815 and tr_A0A099ZZU9_A0A099ZZU9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0M6G9_A0A2I0M6G9_COLLI_8932 and tr_A0A1V4JD30_A0A1V4JD30_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1DBR9_A0A0V1DBR9_TRIBR_45882 and tr_A0A0V0X6B8_A0A0V0X6B8_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1DBR9_A0A0V1DBR9_TRIBR_45882 and tr_A0A0V0VJ95_A0A0V0VJ95_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DBR9_A0A0V1DBR9_TRIBR_45882 and tr_A0A0V1L705_A0A0V1L705_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1DBR9_A0A0V1DBR9_TRIBR_45882 and tr_A0A0V1MVR1_A0A0V1MVR1_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V1DBR9_A0A0V1DBR9_TRIBR_45882 and tr_A0A0V1P8X9_A0A0V1P8X9_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1DBR9_A0A0V1DBR9_TRIBR_45882 and tr_A0A0V1HAA8_A0A0V1HAA8_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V1DBR9_A0A0V1DBR9_TRIBR_45882 and tr_A0A0V0TZE0_A0A0V0TZE0_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1S3KTG1_A0A1S3KTG1_SALSA_8030 and tr_A0A1S3PTS8_A0A1S3PTS8_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3KTG1_A0A1S3KTG1_SALSA_8030 and tr_A0A060VM90_A0A060VM90_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3KTG1_A0A1S3KTG1_SALSA_8030 and tr_A0A060VYF7_A0A060VYF7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3LTA5_A0A1S3LTA5_SALSA_8030 and tr_A0A060YVH6_A0A060YVH6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MQ13_A0A1S3MQ13_SALSA_8030 and tr_A0A1S3RZJ0_A0A1S3RZJ0_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1L8GE02_A0A1L8GE02_XENLA_8355 and tr_A0A1L8GIS6_A0A1L8GIS6_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A2I4AKA5_A0A2I4AKA5_9TELE_52670 and tr_A0A2I4D695_A0A2I4D695_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A060VSW3_A0A060VSW3_ONCMY_8022 and tr_A0A060YLF8_A0A060YLF8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1Z5SLK4_A0A1Z5SLK4_HORWE_1157616 and tr_A0A1Z5T757_A0A1Z5T757_HORWE_1157616 are exactly identical! WARNING: Sequences tr_A0A226MMZ1_A0A226MMZ1_CALSU_9009 and tr_A0A226NZT9_A0A226NZT9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2H3DPM4_A0A2H3DPM4_ARMGA_47427 and tr_A0A2H3ASN7_A0A2H3ASN7_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2H3DPM4_A0A2H3DPM4_ARMGA_47427 and tr_A0A284RGT6_A0A284RGT6_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2A4IYD7_A0A2A4IYD7_HELVI_7102 and tr_A0A2A4K0S3_A0A2A4K0S3_HELVI_7102 are exactly identical! WARNING: Sequences tr_A0A2D0Q9P4_A0A2D0Q9P4_ICTPU_7998 and tr_A0A2D0QDH0_A0A2D0QDH0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RU12_A0A2D0RU12_ICTPU_7998 and tr_A0A2D0RUZ5_A0A2D0RUZ5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SF62_A0A2D0SF62_ICTPU_7998 and tr_A0A2D0SFX2_A0A2D0SFX2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G5HKK0_A0A2G5HKK0_CERBT_122368 and tr_A0A2I0S3I5_A0A2I0S3I5_9PEZI_348901 are exactly identical! WARNING: Sequences tr_A0A2G5HKK0_A0A2G5HKK0_CERBT_122368 and tr_A0A2S6BZJ2_A0A2S6BZJ2_9PEZI_357750 are exactly identical! WARNING: Sequences tr_A0A2I1GHE7_A0A2I1GHE7_9GLOM_588596 and tr_A0A2H5SAX5_A0A2H5SAX5_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A2U3W7T8_A0A2U3W7T8_ODORO_9708 and tr_A0A2U3XAP9_A0A2U3XAP9_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 342 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WUY3/3_mltree/Q8WUY3.raxml.reduced.phy Alignment comprises 1 partitions and 75 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 75 / 75 Gaps: 4.37 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WUY3/3_mltree/Q8WUY3.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 973 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 75 / 6000 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -128334.619707] Initial branch length optimization [00:00:02 -101583.595823] Model parameter optimization (eps = 10.000000) [00:00:27 -100396.575792] AUTODETECT spr round 1 (radius: 5) [00:01:51 -66021.754669] AUTODETECT spr round 2 (radius: 10) [00:03:20 -46442.437559] AUTODETECT spr round 3 (radius: 15) [00:04:55 -38487.662453] AUTODETECT spr round 4 (radius: 20) [00:06:35 -32882.856782] AUTODETECT spr round 5 (radius: 25) [00:08:23 -31110.017768] SPR radius for FAST iterations: 25 (autodetect) [00:08:23 -31110.017768] Model parameter optimization (eps = 3.000000) [00:08:39 -31045.057357] FAST spr round 1 (radius: 25) [00:10:11 -25887.754584] FAST spr round 2 (radius: 25) [00:11:35 -24230.786083] FAST spr round 3 (radius: 25) [00:12:52 -22576.871078] FAST spr round 4 (radius: 25) [00:14:09 -22426.872664] FAST spr round 5 (radius: 25) [00:15:23 -22405.498639] FAST spr round 6 (radius: 25) [00:16:35 -22405.343303] FAST spr round 7 (radius: 25) [00:17:48 -22405.342698] Model parameter optimization (eps = 1.000000) [00:17:56 -22403.553057] SLOW spr round 1 (radius: 5) [00:19:16 -22397.500366] SLOW spr round 2 (radius: 5) [00:20:37 -22392.292149] SLOW spr round 3 (radius: 5) [00:21:56 -22391.546183] SLOW spr round 4 (radius: 5) [00:23:14 -22391.545976] SLOW spr round 5 (radius: 10) [00:24:39 -22380.664121] SLOW spr round 6 (radius: 5) [00:26:13 -22375.731806] SLOW spr round 7 (radius: 5) [00:27:39 -22372.932762] SLOW spr round 8 (radius: 5) [00:29:00 -22372.932668] SLOW spr round 9 (radius: 10) [00:30:23 -22372.932666] SLOW spr round 10 (radius: 15) [00:32:05 -22213.883834] SLOW spr round 11 (radius: 5) [00:33:42 -22190.346912] SLOW spr round 12 (radius: 5) [00:35:09 -22190.053386] SLOW spr round 13 (radius: 5) [00:36:31 -22190.053362] SLOW spr round 14 (radius: 10) [00:37:53 -22189.741325] SLOW spr round 15 (radius: 5) [00:39:24 -22189.741325] SLOW spr round 16 (radius: 10) [00:40:51 -22189.484161] SLOW spr round 17 (radius: 5) [00:42:22 -22188.693188] SLOW spr round 18 (radius: 5) [00:43:45 -22188.693178] SLOW spr round 19 (radius: 10) [00:45:08 -22186.911376] SLOW spr round 20 (radius: 5) [00:46:39 -22186.691865] SLOW spr round 21 (radius: 5) [00:47:51] [worker #1] ML tree search #2, logLikelihood: -22164.072977 [00:48:03 -22186.613404] SLOW spr round 22 (radius: 10) [00:49:25 -22186.613404] SLOW spr round 23 (radius: 15) [00:51:04 -22186.613404] SLOW spr round 24 (radius: 20) [00:52:59 -22185.377917] SLOW spr round 25 (radius: 5) [00:54:36 -22184.637007] SLOW spr round 26 (radius: 5) [00:56:03 -22184.636903] SLOW spr round 27 (radius: 10) [00:57:30 -22184.127919] SLOW spr round 28 (radius: 5) [00:59:01 -22183.685676] SLOW spr round 29 (radius: 5) [01:00:25 -22183.685666] SLOW spr round 30 (radius: 10) [01:01:48 -22183.685664] SLOW spr round 31 (radius: 15) [01:03:27 -22183.685663] SLOW spr round 32 (radius: 20) [01:05:21 -22183.685662] SLOW spr round 33 (radius: 25) [01:07:24 -22182.794027] SLOW spr round 34 (radius: 5) [01:09:01 -22182.793975] SLOW spr round 35 (radius: 10) [01:10:32 -22182.793974] SLOW spr round 36 (radius: 15) [01:12:09 -22182.793974] SLOW spr round 37 (radius: 20) [01:14:03 -22182.793974] SLOW spr round 38 (radius: 25) [01:16:05 -22182.793974] Model parameter optimization (eps = 0.100000) [01:16:10] [worker #0] ML tree search #1, logLikelihood: -22182.700502 [01:16:10 -127564.282291] Initial branch length optimization [01:16:12 -101220.210530] Model parameter optimization (eps = 10.000000) [01:16:33 -100144.740664] AUTODETECT spr round 1 (radius: 5) [01:17:58 -66202.550741] AUTODETECT spr round 2 (radius: 10) [01:19:26 -47775.299553] AUTODETECT spr round 3 (radius: 15) [01:21:02 -38432.569457] AUTODETECT spr round 4 (radius: 20) [01:22:43 -33845.043319] AUTODETECT spr round 5 (radius: 25) [01:24:28 -30260.980891] SPR radius for FAST iterations: 25 (autodetect) [01:24:28 -30260.980891] Model parameter optimization (eps = 3.000000) [01:24:47 -30210.131386] FAST spr round 1 (radius: 25) [01:26:25 -23663.517306] FAST spr round 2 (radius: 25) [01:27:56 -22370.363534] FAST spr round 3 (radius: 25) [01:29:16 -22224.296556] FAST spr round 4 (radius: 25) [01:30:32 -22209.181333] FAST spr round 5 (radius: 25) [01:31:46 -22205.412908] FAST spr round 6 (radius: 25) [01:32:35] [worker #1] ML tree search #4, logLikelihood: -22164.900669 [01:32:58 -22205.412763] Model parameter optimization (eps = 1.000000) [01:33:10 -22202.134752] SLOW spr round 1 (radius: 5) [01:34:30 -22197.427536] SLOW spr round 2 (radius: 5) [01:35:51 -22197.424955] SLOW spr round 3 (radius: 10) [01:37:14 -22193.882901] SLOW spr round 4 (radius: 5) [01:38:48 -22192.815606] SLOW spr round 5 (radius: 5) [01:40:15 -22190.629564] SLOW spr round 6 (radius: 5) [01:41:38 -22190.625517] SLOW spr round 7 (radius: 10) [01:42:56 -22190.625415] SLOW spr round 8 (radius: 15) [01:44:35 -22190.543880] SLOW spr round 9 (radius: 20) [01:46:31 -22190.543803] SLOW spr round 10 (radius: 25) [01:48:40 -22190.096438] SLOW spr round 11 (radius: 5) [01:50:20 -22187.005346] SLOW spr round 12 (radius: 5) [01:51:51 -22186.795102] SLOW spr round 13 (radius: 5) [01:53:16 -22186.352963] SLOW spr round 14 (radius: 5) [01:54:36 -22186.352017] SLOW spr round 15 (radius: 10) [01:55:59 -22180.946596] SLOW spr round 16 (radius: 5) [01:57:32 -22178.438437] SLOW spr round 17 (radius: 5) [01:58:57 -22178.438345] SLOW spr round 18 (radius: 10) [02:00:20 -22178.438314] SLOW spr round 19 (radius: 15) [02:01:58 -22178.438289] SLOW spr round 20 (radius: 20) [02:03:56 -22178.438263] SLOW spr round 21 (radius: 25) [02:06:07 -22178.438237] Model parameter optimization (eps = 0.100000) [02:06:15] [worker #0] ML tree search #3, logLikelihood: -22178.370415 [02:06:15 -127426.161097] Initial branch length optimization [02:06:17 -101185.381180] Model parameter optimization (eps = 10.000000) [02:06:52 -100090.616861] AUTODETECT spr round 1 (radius: 5) [02:08:17 -66282.040836] AUTODETECT spr round 2 (radius: 10) [02:09:45 -45924.319648] AUTODETECT spr round 3 (radius: 15) [02:11:25 -36072.192220] AUTODETECT spr round 4 (radius: 20) [02:13:13 -31906.020930] AUTODETECT spr round 5 (radius: 25) [02:15:05 -29724.900196] SPR radius for FAST iterations: 25 (autodetect) [02:15:05 -29724.900196] Model parameter optimization (eps = 3.000000) [02:15:19 -29676.816051] FAST spr round 1 (radius: 25) [02:17:00 -22996.604555] FAST spr round 2 (radius: 25) [02:18:28 -22298.674983] FAST spr round 3 (radius: 25) [02:19:48 -22220.842235] FAST spr round 4 (radius: 25) [02:21:04 -22206.483180] FAST spr round 5 (radius: 25) [02:22:19 -22206.216376] FAST spr round 6 (radius: 25) [02:23:33 -22205.896201] FAST spr round 7 (radius: 25) [02:24:46 -22205.896142] Model parameter optimization (eps = 1.000000) [02:24:57 -22197.361511] SLOW spr round 1 (radius: 5) [02:26:18 -22191.799940] SLOW spr round 2 (radius: 5) [02:27:37 -22191.642032] SLOW spr round 3 (radius: 5) [02:28:55 -22191.641630] SLOW spr round 4 (radius: 10) [02:30:19 -22189.939846] SLOW spr round 5 (radius: 5) [02:31:52 -22189.559856] SLOW spr round 6 (radius: 5) [02:33:17 -22189.555226] SLOW spr round 7 (radius: 10) [02:34:42 -22186.064034] SLOW spr round 8 (radius: 5) [02:34:51] [worker #1] ML tree search #6, logLikelihood: -22234.663304 [02:36:14 -22184.962065] SLOW spr round 9 (radius: 5) [02:37:38 -22184.961993] SLOW spr round 10 (radius: 10) [02:39:02 -22184.961993] SLOW spr round 11 (radius: 15) [02:40:47 -22184.961957] SLOW spr round 12 (radius: 20) [02:42:54 -22175.650095] SLOW spr round 13 (radius: 5) [02:44:31 -22171.881975] SLOW spr round 14 (radius: 5) [02:45:59 -22171.129164] SLOW spr round 15 (radius: 5) [02:47:21 -22171.129101] SLOW spr round 16 (radius: 10) [02:48:45 -22171.129101] SLOW spr round 17 (radius: 15) [02:50:29 -22171.129101] SLOW spr round 18 (radius: 20) [02:52:35 -22171.129101] SLOW spr round 19 (radius: 25) [02:54:58 -22169.219597] SLOW spr round 20 (radius: 5) [02:56:36 -22161.945085] SLOW spr round 21 (radius: 5) [02:58:05 -22160.870440] SLOW spr round 22 (radius: 5) [02:59:28 -22160.869714] SLOW spr round 23 (radius: 10) [03:00:50 -22160.869685] SLOW spr round 24 (radius: 15) [03:02:34 -22160.869500] SLOW spr round 25 (radius: 20) [03:04:40 -22160.843177] SLOW spr round 26 (radius: 25) [03:07:01 -22160.597821] SLOW spr round 27 (radius: 5) [03:07:26] [worker #1] ML tree search #8, logLikelihood: -22430.896575 [03:08:39 -22158.503372] SLOW spr round 28 (radius: 5) [03:10:08 -22158.034323] SLOW spr round 29 (radius: 5) [03:11:30 -22158.031464] SLOW spr round 30 (radius: 10) [03:12:53 -22157.920860] SLOW spr round 31 (radius: 5) [03:14:23 -22157.918843] SLOW spr round 32 (radius: 10) [03:15:52 -22157.918540] SLOW spr round 33 (radius: 15) [03:17:35 -22157.915681] SLOW spr round 34 (radius: 20) [03:19:40 -22157.915674] SLOW spr round 35 (radius: 25) [03:21:57 -22157.915672] Model parameter optimization (eps = 0.100000) [03:22:01] [worker #0] ML tree search #5, logLikelihood: -22157.866496 [03:22:02 -128860.684532] Initial branch length optimization [03:22:04 -100846.126600] Model parameter optimization (eps = 10.000000) [03:22:42 -100121.060158] AUTODETECT spr round 1 (radius: 5) [03:24:08 -65159.657752] AUTODETECT spr round 2 (radius: 10) [03:25:36 -45707.486925] AUTODETECT spr round 3 (radius: 15) [03:27:13 -36363.943362] AUTODETECT spr round 4 (radius: 20) [03:28:55 -33312.787603] AUTODETECT spr round 5 (radius: 25) [03:30:55 -30525.604264] SPR radius for FAST iterations: 25 (autodetect) [03:30:55 -30525.604264] Model parameter optimization (eps = 3.000000) [03:31:09 -30476.031293] FAST spr round 1 (radius: 25) [03:32:48 -23022.064943] FAST spr round 2 (radius: 25) [03:34:11 -22357.065710] FAST spr round 3 (radius: 25) [03:35:30 -22304.378596] FAST spr round 4 (radius: 25) [03:36:45 -22299.374939] FAST spr round 5 (radius: 25) [03:37:59 -22299.218444] FAST spr round 6 (radius: 25) [03:39:13 -22299.216600] Model parameter optimization (eps = 1.000000) [03:39:22 -22296.931215] SLOW spr round 1 (radius: 5) [03:40:41 -22293.391495] SLOW spr round 2 (radius: 5) [03:42:01 -22291.413643] SLOW spr round 3 (radius: 5) [03:43:21 -22291.413501] SLOW spr round 4 (radius: 10) [03:44:46 -22290.514962] SLOW spr round 5 (radius: 5) [03:46:19 -22290.513168] SLOW spr round 6 (radius: 10) [03:47:51 -22289.371445] SLOW spr round 7 (radius: 5) [03:49:22 -22288.236873] SLOW spr round 8 (radius: 5) [03:50:46 -22288.236721] SLOW spr round 9 (radius: 10) [03:52:09 -22288.236651] SLOW spr round 10 (radius: 15) [03:53:53 -22287.678091] SLOW spr round 11 (radius: 5) [03:55:24 -22287.675336] SLOW spr round 12 (radius: 10) [03:56:56 -22287.674236] SLOW spr round 13 (radius: 15) [03:58:39 -22286.957251] SLOW spr round 14 (radius: 5) [04:00:16 -22284.710345] SLOW spr round 15 (radius: 5) [04:01:45 -22282.018872] SLOW spr round 16 (radius: 5) [04:03:08 -22279.926936] SLOW spr round 17 (radius: 5) [04:04:26 -22279.926881] SLOW spr round 18 (radius: 10) [04:05:47 -22279.926880] SLOW spr round 19 (radius: 15) [04:07:31 -22279.795704] SLOW spr round 20 (radius: 5) [04:09:04 -22279.795436] SLOW spr round 21 (radius: 10) [04:10:34 -22279.795396] SLOW spr round 22 (radius: 15) [04:12:15 -22279.795381] SLOW spr round 23 (radius: 20) [04:14:16 -22279.795340] SLOW spr round 24 (radius: 25) [04:16:37 -22174.602676] SLOW spr round 25 (radius: 5) [04:18:17 -22156.972103] SLOW spr round 26 (radius: 5) [04:19:46 -22155.740589] SLOW spr round 27 (radius: 5) [04:21:08 -22155.739753] SLOW spr round 28 (radius: 10) [04:22:29 -22155.710373] SLOW spr round 29 (radius: 15) [04:24:11 -22155.709670] SLOW spr round 30 (radius: 20) [04:26:12 -22155.708951] SLOW spr round 31 (radius: 25) [04:28:31 -22155.708216] Model parameter optimization (eps = 0.100000) [04:28:37] [worker #0] ML tree search #7, logLikelihood: -22155.549031 [04:28:37 -128386.186707] Initial branch length optimization [04:28:39 -101798.283219] Model parameter optimization (eps = 10.000000) [04:29:26 -100755.616664] AUTODETECT spr round 1 (radius: 5) [04:30:50 -63773.517933] AUTODETECT spr round 2 (radius: 10) [04:32:17 -46410.378863] AUTODETECT spr round 3 (radius: 15) [04:33:49 -36548.897725] AUTODETECT spr round 4 (radius: 20) [04:35:33 -31000.094178] AUTODETECT spr round 5 (radius: 25) [04:37:22 -29753.516734] SPR radius for FAST iterations: 25 (autodetect) [04:37:22 -29753.516734] Model parameter optimization (eps = 3.000000) [04:37:37 -29683.874500] FAST spr round 1 (radius: 25) [04:39:18 -24388.603500] FAST spr round 2 (radius: 25) [04:40:43 -22768.988235] FAST spr round 3 (radius: 25) [04:42:02 -22505.450393] FAST spr round 4 (radius: 25) [04:43:18 -22460.603020] FAST spr round 5 (radius: 25) [04:44:30 -22446.965181] FAST spr round 6 (radius: 25) [04:45:41 -22446.961918] Model parameter optimization (eps = 1.000000) [04:45:51 -22444.073700] SLOW spr round 1 (radius: 5) [04:47:11 -22437.128602] SLOW spr round 2 (radius: 5) [04:48:31 -22434.950281] SLOW spr round 3 (radius: 5) [04:49:48 -22434.950235] SLOW spr round 4 (radius: 10) [04:51:12 -22428.047159] SLOW spr round 5 (radius: 5) [04:52:01] [worker #1] ML tree search #10, logLikelihood: -22885.978758 [04:52:46 -22419.003681] SLOW spr round 6 (radius: 5) [04:54:12 -22417.640310] SLOW spr round 7 (radius: 5) [04:55:32 -22417.638949] SLOW spr round 8 (radius: 10) [04:56:54 -22417.638833] SLOW spr round 9 (radius: 15) [04:58:35 -22411.445955] SLOW spr round 10 (radius: 5) [05:00:11 -22408.210754] SLOW spr round 11 (radius: 5) [05:01:37 -22408.210464] SLOW spr round 12 (radius: 10) [05:03:00 -22408.210392] SLOW spr round 13 (radius: 15) [05:04:40 -22407.733591] SLOW spr round 14 (radius: 5) [05:06:14 -22407.733578] SLOW spr round 15 (radius: 10) [05:07:42 -22407.598978] SLOW spr round 16 (radius: 5) [05:09:11 -22407.598405] SLOW spr round 17 (radius: 10) [05:10:37 -22407.598165] SLOW spr round 18 (radius: 15) [05:12:16 -22407.598063] SLOW spr round 19 (radius: 20) [05:14:15 -22407.598019] SLOW spr round 20 (radius: 25) [05:16:33 -22407.015533] SLOW spr round 21 (radius: 5) [05:18:10 -22407.013212] SLOW spr round 22 (radius: 10) [05:19:41 -22407.012870] SLOW spr round 23 (radius: 15) [05:21:21 -22406.239431] SLOW spr round 24 (radius: 5) [05:22:55 -22406.237859] SLOW spr round 25 (radius: 10) [05:24:24 -22406.237805] SLOW spr round 26 (radius: 15) [05:26:03 -22406.237802] SLOW spr round 27 (radius: 20) [05:28:03 -22406.237800] SLOW spr round 28 (radius: 25) [05:30:20 -22406.237795] Model parameter optimization (eps = 0.100000) [05:30:25] [worker #0] ML tree search #9, logLikelihood: -22406.140935 [05:30:25 -127357.128297] Initial branch length optimization [05:30:27 -100447.117352] Model parameter optimization (eps = 10.000000) [05:31:06 -99385.452511] AUTODETECT spr round 1 (radius: 5) [05:32:31 -65073.983890] AUTODETECT spr round 2 (radius: 10) [05:33:59 -48244.199740] AUTODETECT spr round 3 (radius: 15) [05:35:37 -37833.457352] AUTODETECT spr round 4 (radius: 20) [05:37:20 -29144.274553] AUTODETECT spr round 5 (radius: 25) [05:39:03 -27891.114357] SPR radius for FAST iterations: 25 (autodetect) [05:39:03 -27891.114357] Model parameter optimization (eps = 3.000000) [05:39:19 -27841.583614] FAST spr round 1 (radius: 25) [05:40:49 -23757.674645] FAST spr round 2 (radius: 25) [05:42:10 -23352.024618] FAST spr round 3 (radius: 25) [05:43:27 -22809.839367] FAST spr round 4 (radius: 25) [05:44:47 -22569.872542] FAST spr round 5 (radius: 25) [05:46:04 -22515.421495] FAST spr round 6 (radius: 25) [05:47:19 -22498.671637] FAST spr round 7 (radius: 25) [05:48:30 -22496.954939] FAST spr round 8 (radius: 25) [05:49:12] [worker #1] ML tree search #12, logLikelihood: -22173.058298 [05:49:41 -22496.954454] Model parameter optimization (eps = 1.000000) [05:49:46 -22496.353984] SLOW spr round 1 (radius: 5) [05:51:05 -22488.926319] SLOW spr round 2 (radius: 5) [05:52:25 -22488.621489] SLOW spr round 3 (radius: 5) [05:53:42 -22488.619728] SLOW spr round 4 (radius: 10) [05:55:03 -22486.126212] SLOW spr round 5 (radius: 5) [05:56:33 -22485.767085] SLOW spr round 6 (radius: 5) [05:57:56 -22485.767054] SLOW spr round 7 (radius: 10) [05:59:18 -22485.767026] SLOW spr round 8 (radius: 15) [06:01:06 -22299.848360] SLOW spr round 9 (radius: 5) [06:02:42 -22184.041502] SLOW spr round 10 (radius: 5) [06:04:11 -22176.673030] SLOW spr round 11 (radius: 5) [06:05:29 -22176.667312] SLOW spr round 12 (radius: 10) [06:06:47 -22176.666957] SLOW spr round 13 (radius: 15) [06:08:31 -22176.666919] SLOW spr round 14 (radius: 20) [06:10:37 -22174.057026] SLOW spr round 15 (radius: 5) [06:12:15 -22173.344022] SLOW spr round 16 (radius: 5) [06:13:42 -22173.342487] SLOW spr round 17 (radius: 10) [06:15:08 -22170.975499] SLOW spr round 18 (radius: 5) [06:16:37 -22170.975366] SLOW spr round 19 (radius: 10) [06:18:03 -22170.975340] SLOW spr round 20 (radius: 15) [06:19:45 -22170.975319] SLOW spr round 21 (radius: 20) [06:21:51 -22170.975297] SLOW spr round 22 (radius: 25) [06:24:19 -22170.940249] Model parameter optimization (eps = 0.100000) [06:24:30] [worker #0] ML tree search #11, logLikelihood: -22168.778279 [06:24:30 -126840.595473] Initial branch length optimization [06:24:33 -100017.314659] Model parameter optimization (eps = 10.000000) [06:25:05 -99493.080369] AUTODETECT spr round 1 (radius: 5) [06:25:19] [worker #1] ML tree search #14, logLikelihood: -22175.371577 [06:26:29 -64360.242215] AUTODETECT spr round 2 (radius: 10) [06:27:57 -46739.282902] AUTODETECT spr round 3 (radius: 15) [06:29:32 -38523.894410] AUTODETECT spr round 4 (radius: 20) [06:31:16 -34399.034337] AUTODETECT spr round 5 (radius: 25) [06:33:11 -31485.717358] SPR radius for FAST iterations: 25 (autodetect) [06:33:11 -31485.717358] Model parameter optimization (eps = 3.000000) [06:33:25 -31455.925441] FAST spr round 1 (radius: 25) [06:35:00 -25688.070395] FAST spr round 2 (radius: 25) [06:36:24 -25244.201011] FAST spr round 3 (radius: 25) [06:37:41 -25219.696097] FAST spr round 4 (radius: 25) [06:38:58 -25213.478235] FAST spr round 5 (radius: 25) [06:40:12 -25213.476786] Model parameter optimization (eps = 1.000000) [06:40:25 -25211.497248] SLOW spr round 1 (radius: 5) [06:41:47 -25202.504334] SLOW spr round 2 (radius: 5) [06:43:08 -25202.075108] SLOW spr round 3 (radius: 5) [06:44:29 -25202.074273] SLOW spr round 4 (radius: 10) [06:45:53 -25198.495383] SLOW spr round 5 (radius: 5) [06:47:27 -25198.494472] SLOW spr round 6 (radius: 10) [06:48:58 -25195.496835] SLOW spr round 7 (radius: 5) [06:50:31 -25189.674119] SLOW spr round 8 (radius: 5) [06:51:55 -25189.674078] SLOW spr round 9 (radius: 10) [06:53:19 -25189.674057] SLOW spr round 10 (radius: 15) [06:55:01 -25188.071185] SLOW spr round 11 (radius: 5) [06:56:38 -25187.112676] SLOW spr round 12 (radius: 5) [06:58:04 -25186.629717] SLOW spr round 13 (radius: 5) [06:59:26 -25186.182359] SLOW spr round 14 (radius: 5) [07:00:45 -25186.182323] SLOW spr round 15 (radius: 10) [07:02:07 -25186.182308] SLOW spr round 16 (radius: 15) [07:03:50 -25186.182300] SLOW spr round 17 (radius: 20) [07:05:57 -25038.880149] SLOW spr round 18 (radius: 5) [07:07:39 -24781.668679] SLOW spr round 19 (radius: 5) [07:09:10 -24655.465554] SLOW spr round 20 (radius: 5) [07:10:36 -24641.884809] SLOW spr round 21 (radius: 5) [07:11:56 -24637.806134] SLOW spr round 22 (radius: 5) [07:13:15 -24635.636392] SLOW spr round 23 (radius: 5) [07:14:33 -24635.636385] SLOW spr round 24 (radius: 10) [07:16:00 -24285.323315] SLOW spr round 25 (radius: 5) [07:17:38 -23646.624822] SLOW spr round 26 (radius: 5) [07:18:14] [worker #1] ML tree search #16, logLikelihood: -22191.967384 [07:19:05 -23071.044355] SLOW spr round 27 (radius: 5) [07:20:29 -22610.184480] SLOW spr round 28 (radius: 5) [07:21:51 -22488.903221] SLOW spr round 29 (radius: 5) [07:23:10 -22488.711876] SLOW spr round 30 (radius: 5) [07:24:28 -22488.711641] SLOW spr round 31 (radius: 10) [07:25:52 -22463.010647] SLOW spr round 32 (radius: 5) [07:27:25 -22460.781194] SLOW spr round 33 (radius: 5) [07:28:49 -22460.780653] SLOW spr round 34 (radius: 10) [07:30:13 -22455.874877] SLOW spr round 35 (radius: 5) [07:31:44 -22455.404290] SLOW spr round 36 (radius: 5) [07:33:08 -22455.403378] SLOW spr round 37 (radius: 10) [07:34:31 -22455.240484] SLOW spr round 38 (radius: 5) [07:36:02 -22455.240400] SLOW spr round 39 (radius: 10) [07:37:35 -22215.422168] SLOW spr round 40 (radius: 5) [07:39:09 -22181.882721] SLOW spr round 41 (radius: 5) [07:40:33 -22181.710524] SLOW spr round 42 (radius: 5) [07:41:53 -22181.709854] SLOW spr round 43 (radius: 10) [07:43:16 -22181.709578] SLOW spr round 44 (radius: 15) [07:44:56 -22181.709331] SLOW spr round 45 (radius: 20) [07:46:54 -22181.709163] SLOW spr round 46 (radius: 25) [07:49:13 -22181.709000] Model parameter optimization (eps = 0.100000) [07:49:18] [worker #0] ML tree search #13, logLikelihood: -22181.645624 [07:49:18 -128812.995433] Initial branch length optimization [07:49:20 -101806.261345] Model parameter optimization (eps = 10.000000) [07:49:52 -100594.831651] AUTODETECT spr round 1 (radius: 5) [07:51:17 -65213.166294] AUTODETECT spr round 2 (radius: 10) [07:52:43 -47681.942551] AUTODETECT spr round 3 (radius: 15) [07:54:16 -38687.451378] AUTODETECT spr round 4 (radius: 20) [07:56:06 -33219.100612] AUTODETECT spr round 5 (radius: 25) [07:57:58 -31926.598012] SPR radius for FAST iterations: 25 (autodetect) [07:57:58 -31926.598012] Model parameter optimization (eps = 3.000000) [07:58:13 -31861.961340] FAST spr round 1 (radius: 25) [07:59:52 -26349.192156] FAST spr round 2 (radius: 25) [08:01:20 -25278.506196] FAST spr round 3 (radius: 25) [08:02:44 -24561.159997] FAST spr round 4 (radius: 25) [08:04:06 -23612.651687] FAST spr round 5 (radius: 25) [08:05:26 -22936.030688] FAST spr round 6 (radius: 25) [08:06:41 -22753.810015] FAST spr round 7 (radius: 25) [08:07:01] [worker #1] ML tree search #18, logLikelihood: -22171.232803 [08:07:56 -22717.065796] FAST spr round 8 (radius: 25) [08:09:08 -22709.739563] FAST spr round 9 (radius: 25) [08:10:20 -22707.538683] FAST spr round 10 (radius: 25) [08:11:30 -22707.538319] Model parameter optimization (eps = 1.000000) [08:11:41 -22702.925953] SLOW spr round 1 (radius: 5) [08:12:59 -22688.728202] SLOW spr round 2 (radius: 5) [08:14:18 -22622.225531] SLOW spr round 3 (radius: 5) [08:15:36 -22619.971879] SLOW spr round 4 (radius: 5) [08:16:53 -22619.235328] SLOW spr round 5 (radius: 5) [08:18:11 -22619.232647] SLOW spr round 6 (radius: 10) [08:19:35 -22362.517934] SLOW spr round 7 (radius: 5) [08:21:08 -22220.232322] SLOW spr round 8 (radius: 5) [08:22:35 -22214.122727] SLOW spr round 9 (radius: 5) [08:23:55 -22214.122060] SLOW spr round 10 (radius: 10) [08:25:17 -22212.216690] SLOW spr round 11 (radius: 5) [08:26:46 -22212.216139] SLOW spr round 12 (radius: 10) [08:28:14 -22193.568020] SLOW spr round 13 (radius: 5) [08:29:46 -22174.786802] SLOW spr round 14 (radius: 5) [08:31:10 -22174.623137] SLOW spr round 15 (radius: 5) [08:32:29 -22174.620450] SLOW spr round 16 (radius: 10) [08:33:53 -22174.258864] SLOW spr round 17 (radius: 5) [08:35:23 -22174.108474] SLOW spr round 18 (radius: 5) [08:36:46 -22174.108375] SLOW spr round 19 (radius: 10) [08:38:08 -22174.108354] SLOW spr round 20 (radius: 15) [08:39:47 -22174.052711] SLOW spr round 21 (radius: 20) [08:41:45 -22171.967942] SLOW spr round 22 (radius: 5) [08:43:21 -22171.966578] SLOW spr round 23 (radius: 10) [08:44:50 -22170.033429] SLOW spr round 24 (radius: 5) [08:46:19 -22170.033398] SLOW spr round 25 (radius: 10) [08:47:45 -22170.033386] SLOW spr round 26 (radius: 15) [08:49:22 -22170.033375] SLOW spr round 27 (radius: 20) [08:51:20 -22170.033363] SLOW spr round 28 (radius: 25) [08:53:32 -22170.033352] Model parameter optimization (eps = 0.100000) [08:53:39] [worker #0] ML tree search #15, logLikelihood: -22168.520079 [08:53:39 -128982.406394] Initial branch length optimization [08:53:41 -102053.585035] Model parameter optimization (eps = 10.000000) [08:54:26 -100835.010387] AUTODETECT spr round 1 (radius: 5) [08:54:48] [worker #1] ML tree search #20, logLikelihood: -22155.253046 [08:55:50 -67145.164479] AUTODETECT spr round 2 (radius: 10) [08:57:17 -49880.119352] AUTODETECT spr round 3 (radius: 15) [08:58:52 -40499.324092] AUTODETECT spr round 4 (radius: 20) [09:00:34 -35489.062262] AUTODETECT spr round 5 (radius: 25) [09:02:25 -31701.420931] SPR radius for FAST iterations: 25 (autodetect) [09:02:25 -31701.420931] Model parameter optimization (eps = 3.000000) [09:02:38 -31660.422469] FAST spr round 1 (radius: 25) [09:04:17 -25269.722519] FAST spr round 2 (radius: 25) [09:05:46 -23403.508343] FAST spr round 3 (radius: 25) [09:07:06 -22361.349140] FAST spr round 4 (radius: 25) [09:08:21 -22238.735044] FAST spr round 5 (radius: 25) [09:09:34 -22231.693451] FAST spr round 6 (radius: 25) [09:10:46 -22231.692789] Model parameter optimization (eps = 1.000000) [09:10:59 -22229.455751] SLOW spr round 1 (radius: 5) [09:12:17 -22222.242665] SLOW spr round 2 (radius: 5) [09:13:34 -22221.419257] SLOW spr round 3 (radius: 5) [09:14:50 -22221.418890] SLOW spr round 4 (radius: 10) [09:16:13 -22196.899851] SLOW spr round 5 (radius: 5) [09:17:43 -22181.244417] SLOW spr round 6 (radius: 5) [09:19:07 -22179.395074] SLOW spr round 7 (radius: 5) [09:20:24 -22179.394948] SLOW spr round 8 (radius: 10) [09:21:44 -22177.722338] SLOW spr round 9 (radius: 5) [09:23:11 -22177.722268] SLOW spr round 10 (radius: 10) [09:24:37 -22177.087230] SLOW spr round 11 (radius: 5) [09:26:04 -22177.087210] SLOW spr round 12 (radius: 10) [09:27:28 -22177.087200] SLOW spr round 13 (radius: 15) [09:29:05 -22176.589940] SLOW spr round 14 (radius: 5) [09:30:35 -22176.589929] SLOW spr round 15 (radius: 10) [09:32:04 -22174.324139] SLOW spr round 16 (radius: 5) [09:33:30 -22174.323947] SLOW spr round 17 (radius: 10) [09:34:54 -22174.323942] SLOW spr round 18 (radius: 15) [09:36:30 -22174.323939] SLOW spr round 19 (radius: 20) [09:38:24 -22174.323935] SLOW spr round 20 (radius: 25) [09:40:30 -22173.953721] SLOW spr round 21 (radius: 5) [09:42:03 -22173.953718] SLOW spr round 22 (radius: 10) [09:43:32 -22173.953717] SLOW spr round 23 (radius: 15) [09:45:08 -22173.953715] SLOW spr round 24 (radius: 20) [09:47:02 -22173.953714] SLOW spr round 25 (radius: 25) [09:49:08 -22173.952266] Model parameter optimization (eps = 0.100000) [09:49:15] [worker #0] ML tree search #17, logLikelihood: -22173.808271 [09:49:16 -127960.992481] Initial branch length optimization [09:49:17 -101446.539934] Model parameter optimization (eps = 10.000000) [09:49:41 -100308.113173] AUTODETECT spr round 1 (radius: 5) [09:51:05 -64508.148637] AUTODETECT spr round 2 (radius: 10) [09:52:31 -48559.208684] AUTODETECT spr round 3 (radius: 15) [09:54:09 -37369.446314] AUTODETECT spr round 4 (radius: 20) [09:55:51 -34012.541308] AUTODETECT spr round 5 (radius: 25) [09:57:46 -31483.777306] SPR radius for FAST iterations: 25 (autodetect) [09:57:46 -31483.777306] Model parameter optimization (eps = 3.000000) [09:57:58 -31440.560455] FAST spr round 1 (radius: 25) [09:59:29 -23366.884891] FAST spr round 2 (radius: 25) [10:00:51 -22506.895288] FAST spr round 3 (radius: 25) [10:02:08 -22221.877147] FAST spr round 4 (radius: 25) [10:03:21 -22204.206179] FAST spr round 5 (radius: 25) [10:04:33 -22204.047423] FAST spr round 6 (radius: 25) [10:05:43 -22203.966631] Model parameter optimization (eps = 1.000000) [10:05:52 -22199.379346] SLOW spr round 1 (radius: 5) [10:07:11 -22189.815699] SLOW spr round 2 (radius: 5) [10:08:28 -22188.010645] SLOW spr round 3 (radius: 5) [10:09:45 -22184.187829] SLOW spr round 4 (radius: 5) [10:11:02 -22183.298879] SLOW spr round 5 (radius: 5) [10:12:20 -22183.298692] SLOW spr round 6 (radius: 10) [10:13:41 -22179.519985] SLOW spr round 7 (radius: 5) [10:15:11 -22178.360487] SLOW spr round 8 (radius: 5) [10:16:36 -22178.359313] SLOW spr round 9 (radius: 10) [10:17:58 -22178.358801] SLOW spr round 10 (radius: 15) [10:19:38 -22177.250548] SLOW spr round 11 (radius: 5) [10:21:10 -22177.250094] SLOW spr round 12 (radius: 10) [10:22:37 -22177.249706] SLOW spr round 13 (radius: 15) [10:24:15 -22177.249346] SLOW spr round 14 (radius: 20) [10:26:14 -22174.548294] SLOW spr round 15 (radius: 5) [10:27:49 -22174.537488] SLOW spr round 16 (radius: 10) [10:29:17 -22174.537433] SLOW spr round 17 (radius: 15) [10:30:52 -22174.537408] SLOW spr round 18 (radius: 20) [10:32:46 -22174.537386] SLOW spr round 19 (radius: 25) [10:34:59 -22171.316819] SLOW spr round 20 (radius: 5) [10:36:35 -22166.523512] SLOW spr round 21 (radius: 5) [10:38:01 -22166.523355] SLOW spr round 22 (radius: 10) [10:39:25 -22166.523303] SLOW spr round 23 (radius: 15) [10:41:01 -22166.523277] SLOW spr round 24 (radius: 20) [10:43:00 -22166.523251] SLOW spr round 25 (radius: 25) [10:45:12 -22166.523233] Model parameter optimization (eps = 0.100000) [10:45:26] [worker #0] ML tree search #19, logLikelihood: -22162.591837 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.230738,0.636092) (0.266750,0.711704) (0.383417,1.081573) (0.119095,2.088152) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -22155.253046 AIC score: 48208.506093 / AICc score: 7649308.506093 / BIC score: 52725.290426 Free parameters (model + branch lengths): 1949 WARNING: Number of free parameters (K=1949) is larger than alignment size (n=75). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WUY3/3_mltree/Q8WUY3.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WUY3/3_mltree/Q8WUY3.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WUY3/3_mltree/Q8WUY3.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8WUY3/3_mltree/Q8WUY3.raxml.log Analysis started: 07-Jul-2021 04:55:45 / finished: 07-Jul-2021 15:41:12 Elapsed time: 38726.609 seconds Consumed energy: 3314.698 Wh (= 17 km in an electric car, or 83 km with an e-scooter!)