RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 07-Jul-2021 18:33:56 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TF72/2_msa/Q8TF72_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TF72/3_mltree/Q8TF72 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TF72/2_msa/Q8TF72_trimmed_msa.fasta [00:00:00] Loaded alignment with 597 taxa and 21 sites WARNING: Sequences tr_B4QFF9_B4QFF9_DROSI_7240 and sp_A1Z9P3_SHRM_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QFF9_B4QFF9_DROSI_7240 and tr_B4HRB2_B4HRB2_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A1D5P268_A0A1D5P268_CHICK_9031 and tr_G3UUJ4_G3UUJ4_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5P268_A0A1D5P268_CHICK_9031 and tr_A0A226MPF5_A0A226MPF5_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5P268_A0A1D5P268_CHICK_9031 and tr_A0A226PJD8_A0A226PJD8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_G1NPE7_G1NPE7_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_K7FPB5_K7FPB5_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_H0ZDS3_H0ZDS3_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_U3IE07_U3IE07_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A151N0U9_A0A151N0U9_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A091EW71_A0A091EW71_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A091JMD7_A0A091JMD7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A093SL25_A0A093SL25_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A091UND0_A0A091UND0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A087RII6_A0A087RII6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A093I1W1_A0A093I1W1_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A091XXZ6_A0A091XXZ6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A099YSE9_A0A099YSE9_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A0A0AKL5_A0A0A0AKL5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A2I0MKY5_A0A2I0MKY5_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A093GSV0_A0A093GSV0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A091I2B5_A0A091I2B5_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A3Q0GZY0_A0A3Q0GZY0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A1V4JBE0_A0A1V4JBE0_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A218USP3_A0A218USP3_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A226NHI5_A0A226NHI5_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PQI8_A0A1D5PQI8_CHICK_9031 and tr_A0A226NTJ9_A0A226NTJ9_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1NH40_F1NH40_CHICK_9031 and tr_A0A0Q3QWL1_A0A0Q3QWL1_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NH40_F1NH40_CHICK_9031 and tr_A0A2I0MGZ0_A0A2I0MGZ0_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NH40_F1NH40_CHICK_9031 and tr_A0A1V4JUP4_A0A1V4JUP4_PATFA_372326 are exactly identical! WARNING: Sequences sp_A2ALU4_SHRM2_MOUSE_10090 and tr_G3HW97_G3HW97_CRIGR_10029 are exactly identical! WARNING: Sequences sp_A2ALU4_SHRM2_MOUSE_10090 and sp_Q7TP36_SHRM2_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9QXN0_SHRM3_MOUSE_10090 and tr_F1LP26_F1LP26_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XTQ0_M3XTQ0_MUSPF_9669 and tr_J9NXX4_J9NXX4_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XTQ0_M3XTQ0_MUSPF_9669 and tr_F6QHD3_F6QHD3_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XTQ0_M3XTQ0_MUSPF_9669 and tr_A0A337SD53_A0A337SD53_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XTQ0_M3XTQ0_MUSPF_9669 and tr_A0A2U3W037_A0A2U3W037_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XTQ0_M3XTQ0_MUSPF_9669 and tr_A0A2U3YC27_A0A2U3YC27_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XTQ0_M3XTQ0_MUSPF_9669 and tr_A0A2Y9KSD2_A0A2Y9KSD2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XTQ0_M3XTQ0_MUSPF_9669 and tr_A0A384CDP0_A0A384CDP0_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y0K7_M3Y0K7_MUSPF_9669 and tr_H3D1G4_H3D1G4_TETNG_99883 are exactly identical! WARNING: Sequences tr_M3Y0K7_M3Y0K7_MUSPF_9669 and tr_H3AUE7_H3AUE7_LATCH_7897 are exactly identical! WARNING: Sequences tr_M3Y0K7_M3Y0K7_MUSPF_9669 and tr_A0A087YHQ4_A0A087YHQ4_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3Y0K7_M3Y0K7_MUSPF_9669 and tr_A0A1U7T998_A0A1U7T998_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3Y0K7_M3Y0K7_MUSPF_9669 and tr_A0A1U7SPB4_A0A1U7SPB4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_M3Y0K7_M3Y0K7_MUSPF_9669 and tr_A0A060XD26_A0A060XD26_ONCMY_8022 are exactly identical! WARNING: Sequences tr_M3Y0K7_M3Y0K7_MUSPF_9669 and tr_A0A2U3XU74_A0A2U3XU74_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_G1R9Q8_G1R9Q8_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_A0A2I2YGZ3_A0A2I2YGZ3_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_K7ESU6_K7ESU6_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and sp_Q9ULL8_SHRM4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_A0A1D5QPG7_A0A1D5QPG7_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_A0A2R8P863_A0A2R8P863_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_G7Q2R4_G7Q2R4_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_A0A096MML9_A0A096MML9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_A0A0D9RJW9_A0A0D9RJW9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_A0A2K5KH86_A0A2K5KH86_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_A0A2K6DCX8_A0A2K6DCX8_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_A0A2K6A654_A0A2K6A654_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_A0A2Y9JSM1_A0A2Y9JSM1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YRX5_M3YRX5_MUSPF_9669 and tr_A0A384BZU7_A0A384BZU7_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z159_M3Z159_MUSPF_9669 and tr_A0A2Y9KKW5_A0A2Y9KKW5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_H2PDP3_H2PDP3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_F1PE29_F1PE29_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_F7H4U4_F7H4U4_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_F7CWY2_F7CWY2_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_G1LZC3_G1LZC3_AILME_9646 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_L5KZ66_L5KZ66_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_M3WHS5_M3WHS5_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_A0A096MTQ2_A0A096MTQ2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_A0A0D9QX38_A0A0D9QX38_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_A0A1S3FGC4_A0A1S3FGC4_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_A0A2K5MMQ7_A0A2K5MMQ7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_A0A2K6DJH7_A0A2K6DJH7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_A0A2K6AF14_A0A2K6AF14_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_A0A2U3WD04_A0A2U3WD04_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_A0A2U3Y8Y6_A0A2U3Y8Y6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1R9M1_G1R9M1_NOMLE_61853 and tr_A0A384C9T0_A0A384C9T0_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1RBY6_G1RBY6_NOMLE_61853 and tr_G3RAX8_G3RAX8_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RBY6_G1RBY6_NOMLE_61853 and tr_H2PUW1_H2PUW1_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RBY6_G1RBY6_NOMLE_61853 and tr_A0A2I3TSL1_A0A2I3TSL1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RBY6_G1RBY6_NOMLE_61853 and sp_Q13796_SHRM2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RBY6_G1RBY6_NOMLE_61853 and tr_F7HNU4_F7HNU4_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RBY6_G1RBY6_NOMLE_61853 and tr_F6YX58_F6YX58_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RBY6_G1RBY6_NOMLE_61853 and tr_A0A096N231_A0A096N231_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RBY6_G1RBY6_NOMLE_61853 and tr_A0A0D9RS12_A0A0D9RS12_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RBY6_G1RBY6_NOMLE_61853 and tr_A0A2K5MKN2_A0A2K5MKN2_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RBY6_G1RBY6_NOMLE_61853 and tr_A0A2K6CYQ5_A0A2K6CYQ5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RBY6_G1RBY6_NOMLE_61853 and tr_A0A2R9CB58_A0A2R9CB58_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1P497_G1P497_MYOLU_59463 and tr_G1QAZ9_G1QAZ9_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1P497_G1P497_MYOLU_59463 and tr_G3IJ31_G3IJ31_CRIGR_10029 are exactly identical! WARNING: Sequences tr_G1P497_G1P497_MYOLU_59463 and tr_A0A3Q0CNW1_A0A3Q0CNW1_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1P651_G1P651_MYOLU_59463 and tr_A0A091DZ82_A0A091DZ82_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_G1T776_G1T776_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_F6WG59_F6WG59_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_H0V3X8_H0V3X8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_G3TIQ1_G3TIQ1_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_A0A287ABE8_A0A287ABE8_PIG_9823 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_D2I1B9_D2I1B9_AILME_9646 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_L5KIJ3_L5KIJ3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_M3WML5_M3WML5_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_A0A1S3GG18_A0A1S3GG18_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_A0A1U7T9S8_A0A1U7T9S8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_A0A2U4C184_A0A2U4C184_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_A0A2U3ZYE9_A0A2U3ZYE9_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_A0A2U3YPF2_A0A2U3YPF2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_A0A2Y9DLG1_A0A2Y9DLG1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_A0A2Y9MK76_A0A2Y9MK76_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_A0A2Y9S8T0_A0A2Y9S8T0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1PVV1_G1PVV1_MYOLU_59463 and tr_A0A384AL81_A0A384AL81_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3H168_G3H168_CRIGR_10029 and sp_Q9Z1Z9_PDLI7_RAT_10116 are exactly identical! WARNING: Sequences tr_G3HQG4_G3HQG4_CRIGR_10029 and tr_A0A3Q0DFY0_A0A3Q0DFY0_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2I2Z7V2_A0A2I2Z7V2_GORGO_9595 and tr_H2PE71_H2PE71_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2Z7V2_A0A2I2Z7V2_GORGO_9595 and tr_F6QCJ5_F6QCJ5_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A2I2Z7V2_A0A2I2Z7V2_GORGO_9595 and sp_Q9UMS6_SYNP2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Z7V2_A0A2I2Z7V2_GORGO_9595 and tr_A0A2R8MAC1_A0A2R8MAC1_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I2Z7V2_A0A2I2Z7V2_GORGO_9595 and tr_A0A2R9B2D0_A0A2R9B2D0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QQE2_G3QQE2_GORGO_9595 and tr_H2QPR1_H2QPR1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QQE2_G3QQE2_GORGO_9595 and sp_Q8TF72_SHRM3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QQE2_G3QQE2_GORGO_9595 and tr_A0A2R9CM48_A0A2R9CM48_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NB84_G1NB84_MELGA_9103 and tr_U3IRI1_U3IRI1_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1KY35_G1KY35_ANOCA_28377 and tr_G3QBZ9_G3QBZ9_GASAC_69293 are exactly identical! WARNING: Sequences tr_G1KY35_G1KY35_ANOCA_28377 and tr_H0Z367_H0Z367_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G1KY35_G1KY35_ANOCA_28377 and tr_A0A091E6F0_A0A091E6F0_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1KY35_G1KY35_ANOCA_28377 and tr_A0A093PPI1_A0A093PPI1_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1KY35_G1KY35_ANOCA_28377 and tr_A0A091V1T7_A0A091V1T7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1KY35_G1KY35_ANOCA_28377 and tr_A0A087RCC6_A0A087RCC6_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1KY35_G1KY35_ANOCA_28377 and tr_A0A099ZCK0_A0A099ZCK0_TINGU_94827 are exactly identical! WARNING: Sequences tr_G1KY35_G1KY35_ANOCA_28377 and tr_A0A091GSY1_A0A091GSY1_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1KY35_G1KY35_ANOCA_28377 and tr_A0A0A0AEX9_A0A0A0AEX9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1KY35_G1KY35_ANOCA_28377 and tr_A0A093GT50_A0A093GT50_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G1KY35_G1KY35_ANOCA_28377 and tr_A0A091IBN2_A0A091IBN2_CALAN_9244 are exactly identical! WARNING: Sequences tr_B5DZ16_B5DZ16_DROPS_46245 and tr_B4GAI9_B4GAI9_DROPE_7234 are exactly identical! WARNING: Sequences tr_F1PX06_F1PX06_CANLF_9615 and tr_H0WXC9_H0WXC9_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A2J8JH45_A0A2J8JH45_PANTR_9598 and tr_A0A2R9BS68_A0A2R9BS68_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6YLT2_F6YLT2_MONDO_13616 and tr_G3WWY0_G3WWY0_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7BBG6_F7BBG6_MONDO_13616 and tr_G3W7H1_G3W7H1_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A3B5Q8S0_A0A3B5Q8S0_XIPMA_8083 and tr_A0A087YED4_A0A087YED4_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QZ79_A0A3B5QZ79_XIPMA_8083 and tr_A0A087XKP7_A0A087XKP7_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088A9S9_A0A088A9S9_APIME_7460 and tr_A0A0L7R897_A0A0L7R897_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A088A9S9_A0A088A9S9_APIME_7460 and tr_A0A2A3E0H6_A0A2A3E0H6_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NQ01_A0A158NQ01_ATTCE_12957 and tr_F4X546_F4X546_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NQ01_A0A158NQ01_ATTCE_12957 and tr_A0A195BJ92_A0A195BJ92_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NQ01_A0A158NQ01_ATTCE_12957 and tr_A0A195FP45_A0A195FP45_9HYME_34720 are exactly identical! WARNING: Sequences tr_I3M6Q0_I3M6Q0_ICTTR_43179 and tr_G5E786_G5E786_LOXAF_9785 are exactly identical! WARNING: Sequences tr_I3M6Q0_I3M6Q0_ICTTR_43179 and tr_A0A2Y9RNK9_A0A2Y9RNK9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0X304_H0X304_OTOGA_30611 and sp_Q96JY6_PDLI2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H0X304_H0X304_OTOGA_30611 and tr_A0A0D9RV19_A0A0D9RV19_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H0X304_H0X304_OTOGA_30611 and tr_A0A2K6A6H1_A0A2K6A6H1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1D5RF04_A0A1D5RF04_MACMU_9544 and tr_A0A096NBY9_A0A096NBY9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5RF04_A0A1D5RF04_MACMU_9544 and tr_A0A2K6E902_A0A2K6E902_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7A2Y2_F7A2Y2_MACMU_9544 and tr_G7PCV4_G7PCV4_MACFA_9541 are exactly identical! WARNING: Sequences tr_G5AY65_G5AY65_HETGA_10181 and tr_A0A091CXN5_A0A091CXN5_FUKDA_885580 are exactly identical! WARNING: Sequences tr_E5SBQ1_E5SBQ1_TRISP_6334 and tr_E5SBR7_E5SBR7_TRISP_6334 are exactly identical! WARNING: Sequences tr_E5SBQ1_E5SBQ1_TRISP_6334 and tr_A0A0V0RTV5_A0A0V0RTV5_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SBQ1_E5SBQ1_TRISP_6334 and tr_A0A0V1D6P3_A0A0V1D6P3_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SBQ1_E5SBQ1_TRISP_6334 and tr_A0A0V0WJH3_A0A0V0WJH3_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SBQ1_E5SBQ1_TRISP_6334 and tr_A0A0V0VYK0_A0A0V0VYK0_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SBQ1_E5SBQ1_TRISP_6334 and tr_A0A0V1LN78_A0A0V1LN78_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SBQ1_E5SBQ1_TRISP_6334 and tr_A0A0V1AEW9_A0A0V1AEW9_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SBQ1_E5SBQ1_TRISP_6334 and tr_A0A0V0YP05_A0A0V0YP05_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SBQ1_E5SBQ1_TRISP_6334 and tr_A0A0V1N785_A0A0V1N785_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SBQ1_E5SBQ1_TRISP_6334 and tr_A0A0V1PN60_A0A0V1PN60_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SBQ1_E5SBQ1_TRISP_6334 and tr_A0A0V1HVS3_A0A0V1HVS3_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5SBQ1_E5SBQ1_TRISP_6334 and tr_A0A0V0UCQ0_A0A0V0UCQ0_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0NB52_A0NB52_ANOGA_7165 and tr_Q5TQJ5_Q5TQJ5_ANOGA_7165 are exactly identical! WARNING: Sequences tr_H3DIF0_H3DIF0_TETNG_99883 and tr_Q4T9G0_Q4T9G0_TETNG_99883 are exactly identical! WARNING: Sequences tr_G3TMW2_G3TMW2_LOXAF_9785 and tr_A0A2Y9DYU7_A0A2Y9DYU7_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0YQ65_H0YQ65_TAEGU_59729 and tr_U3K270_U3K270_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0YQ65_H0YQ65_TAEGU_59729 and tr_A0A087REP8_A0A087REP8_APTFO_9233 are exactly identical! WARNING: Sequences tr_F6ZN18_F6ZN18_XENTR_8364 and sp_Q09JY9_SHRM2_XENTR_8364 are exactly identical! WARNING: Sequences tr_F7ATH7_F7ATH7_XENTR_8364 and tr_A0A1L8GVB1_A0A1L8GVB1_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7ATH7_F7ATH7_XENTR_8364 and tr_A0A226MPQ7_A0A226MPQ7_CALSU_9009 are exactly identical! WARNING: Sequences tr_F7ATH7_F7ATH7_XENTR_8364 and tr_A0A226P9G3_A0A226P9G3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A287AUH9_A0A287AUH9_PIG_9823 and tr_A4IFK4_A4IFK4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A287AUH9_A0A287AUH9_PIG_9823 and tr_A0A1U7UJR4_A0A1U7UJR4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A287AUH9_A0A287AUH9_PIG_9823 and tr_A0A2Y9E622_A0A2Y9E622_TRIMA_127582 are exactly identical! WARNING: Sequences tr_E2BBE8_E2BBE8_HARSA_610380 and tr_A0A026WX10_A0A026WX10_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2BBE8_E2BBE8_HARSA_610380 and tr_A0A151XFQ9_A0A151XFQ9_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2BBE8_E2BBE8_HARSA_610380 and tr_A0A151IVY3_A0A151IVY3_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2BBE8_E2BBE8_HARSA_610380 and tr_A0A195CUI6_A0A195CUI6_9HYME_456900 are exactly identical! WARNING: Sequences tr_E1BNI2_E1BNI2_BOVIN_9913 and tr_G3MZ96_G3MZ96_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1N643_F1N643_BOVIN_9913 and tr_A0A2U4B510_A0A2U4B510_TURTR_9739 are exactly identical! WARNING: Sequences tr_F1N643_F1N643_BOVIN_9913 and tr_A0A2Y9Q812_A0A2Y9Q812_DELLE_9749 are exactly identical! WARNING: Sequences tr_F1N643_F1N643_BOVIN_9913 and tr_A0A2Y9S157_A0A2Y9S157_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F1N643_F1N643_BOVIN_9913 and tr_A0A383YS51_A0A383YS51_BALAS_310752 are exactly identical! WARNING: Sequences tr_U3KBP6_U3KBP6_FICAL_59894 and tr_A0A0Q3M897_A0A0Q3M897_AMAAE_12930 are exactly identical! WARNING: Sequences tr_U3KBP6_U3KBP6_FICAL_59894 and tr_A0A1V4KCQ0_A0A1V4KCQ0_PATFA_372326 are exactly identical! WARNING: Sequences tr_U3KBP6_U3KBP6_FICAL_59894 and tr_A0A218V3I5_A0A218V3I5_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A2I3NI79_A0A2I3NI79_PAPAN_9555 and tr_A0A0D9R963_A0A0D9R963_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3NI79_A0A2I3NI79_PAPAN_9555 and tr_A0A2K5NLR6_A0A2K5NLR6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3NI79_A0A2I3NI79_PAPAN_9555 and tr_A0A2K5ZSR4_A0A2K5ZSR4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151M6W6_A0A151M6W6_ALLMI_8496 and tr_A0A3Q0GJF7_A0A3Q0GJF7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3X6U2_A0A0Q3X6U2_AMAAE_12930 and tr_A0A060W1V1_A0A060W1V1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A091IRR8_A0A091IRR8_EGRGA_188379 and tr_A0A091V274_A0A091V274_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IRR8_A0A091IRR8_EGRGA_188379 and tr_A0A087RF55_A0A087RF55_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VZI4_A0A091VZI4_NIPNI_128390 and tr_A0A087QQZ8_A0A087QQZ8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VZI4_A0A091VZI4_NIPNI_128390 and tr_A0A091GTU0_A0A091GTU0_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091VZI4_A0A091VZI4_NIPNI_128390 and tr_A0A099ZWZ2_A0A099ZWZ2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0LR22_A0A2I0LR22_COLLI_8932 and tr_A0A1V4KZM1_A0A1V4KZM1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0XA69_A0A0V0XA69_9BILA_92179 and tr_A0A0V1L9U8_A0A0V1L9U8_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A1S3RZY2_A0A1S3RZY2_SALSA_8030 and tr_A0A060VXR9_A0A060VXR9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3SEV1_A0A1S3SEV1_SALSA_8030 and tr_A0A060WW62_A0A060WW62_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MHT2_A0A226MHT2_CALSU_9009 and tr_A0A226PB78_A0A226PB78_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0RXH6_A0A2D0RXH6_ICTPU_7998 and tr_A0A2D0RYF0_A0A2D0RYF0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RXH6_A0A2D0RXH6_ICTPU_7998 and tr_A0A2D0RZ13_A0A2D0RZ13_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4ARJ4_A0A2U4ARJ4_TURTR_9739 and tr_A0A2Y9Q9H1_A0A2Y9Q9H1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4ARJ4_A0A2U4ARJ4_TURTR_9739 and tr_A0A383ZB82_A0A383ZB82_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4C486_A0A2U4C486_TURTR_9739 and tr_A0A2Y9MDQ8_A0A2Y9MDQ8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4C486_A0A2U4C486_TURTR_9739 and tr_A0A2Y9S1B0_A0A2Y9S1B0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4C486_A0A2U4C486_TURTR_9739 and tr_A0A384A6R0_A0A384A6R0_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9JL30_A0A2Y9JL30_ENHLU_391180 and tr_A0A2Y9JL94_A0A2Y9JL94_ENHLU_391180 are exactly identical! WARNING: Duplicate sequences found: 212 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TF72/3_mltree/Q8TF72.raxml.reduced.phy Alignment comprises 1 partitions and 21 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 21 / 21 Gaps: 9.30 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TF72/3_mltree/Q8TF72.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 597 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 21 / 1680 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -26361.111465] Initial branch length optimization [00:00:00 -20639.226607] Model parameter optimization (eps = 10.000000) [00:00:06 -20433.612143] AUTODETECT spr round 1 (radius: 5) [00:00:22 -15433.508553] AUTODETECT spr round 2 (radius: 10) [00:00:40 -11483.900570] AUTODETECT spr round 3 (radius: 15) [00:01:00 -9820.781752] AUTODETECT spr round 4 (radius: 20) [00:01:23 -8632.669694] AUTODETECT spr round 5 (radius: 25) [00:01:46 -8057.537563] SPR radius for FAST iterations: 25 (autodetect) [00:01:46 -8057.537563] Model parameter optimization (eps = 3.000000) [00:01:54 -8042.978859] FAST spr round 1 (radius: 25) [00:02:14 -6705.405608] FAST spr round 2 (radius: 25) [00:02:32 -6585.307947] FAST spr round 3 (radius: 25) [00:02:49 -6574.576156] FAST spr round 4 (radius: 25) [00:03:06 -6546.583457] FAST spr round 5 (radius: 25) [00:03:23 -6533.199090] FAST spr round 6 (radius: 25) [00:03:39 -6530.707356] FAST spr round 7 (radius: 25) [00:03:56 -6530.367705] FAST spr round 8 (radius: 25) [00:04:12 -6530.364901] Model parameter optimization (eps = 1.000000) [00:04:18 -6527.424413] SLOW spr round 1 (radius: 5) [00:04:37 -6525.075262] SLOW spr round 2 (radius: 5) [00:04:56 -6524.928014] SLOW spr round 3 (radius: 5) [00:05:14 -6524.925390] SLOW spr round 4 (radius: 10) [00:05:33 -6524.925238] SLOW spr round 5 (radius: 15) [00:05:56 -6521.494858] SLOW spr round 6 (radius: 5) [00:06:19 -6515.739880] SLOW spr round 7 (radius: 5) [00:06:39 -6515.739701] SLOW spr round 8 (radius: 10) [00:06:58 -6515.739700] SLOW spr round 9 (radius: 15) [00:07:20 -6515.739700] SLOW spr round 10 (radius: 20) [00:07:45 -6511.476885] SLOW spr round 11 (radius: 5) [00:08:08 -6510.057993] SLOW spr round 12 (radius: 5) [00:08:28 -6509.353574] SLOW spr round 13 (radius: 5) [00:08:47 -6509.353574] SLOW spr round 14 (radius: 10) [00:09:06 -6509.320156] SLOW spr round 15 (radius: 15) [00:09:28 -6508.136835] SLOW spr round 16 (radius: 5) [00:09:50 -6508.136802] SLOW spr round 17 (radius: 10) [00:10:11 -6504.520408] SLOW spr round 18 (radius: 5) [00:10:32 -6504.517804] SLOW spr round 19 (radius: 10) [00:10:51 -6504.517796] SLOW spr round 20 (radius: 15) [00:11:13 -6503.685134] SLOW spr round 21 (radius: 5) [00:11:35 -6503.650640] SLOW spr round 22 (radius: 10) [00:11:56 -6503.649159] SLOW spr round 23 (radius: 15) [00:12:18 -6503.649035] SLOW spr round 24 (radius: 20) [00:12:42 -6502.627752] SLOW spr round 25 (radius: 5) [00:13:04 -6502.627719] SLOW spr round 26 (radius: 10) [00:13:24 -6502.627715] SLOW spr round 27 (radius: 15) [00:13:46 -6502.627714] SLOW spr round 28 (radius: 20) [00:14:10 -6502.627714] SLOW spr round 29 (radius: 25) [00:14:35 -6478.832862] SLOW spr round 30 (radius: 5) [00:14:58 -6449.006870] SLOW spr round 31 (radius: 5) [00:15:19 -6449.004856] SLOW spr round 32 (radius: 10) [00:15:38 -6449.004856] SLOW spr round 33 (radius: 15) [00:16:01 -6421.662146] SLOW spr round 34 (radius: 5) [00:16:24 -6378.437695] SLOW spr round 35 (radius: 5) [00:16:44 -6377.955749] SLOW spr round 36 (radius: 5) [00:17:03 -6377.955737] SLOW spr round 37 (radius: 10) [00:17:22 -6377.955736] SLOW spr round 38 (radius: 15) [00:17:44 -6377.746857] SLOW spr round 39 (radius: 5) [00:18:06 -6377.746658] SLOW spr round 40 (radius: 10) [00:18:27 -6377.746657] SLOW spr round 41 (radius: 15) [00:18:48 -6377.746656] SLOW spr round 42 (radius: 20) [00:19:12 -6377.746656] SLOW spr round 43 (radius: 25) [00:19:38 -6377.237179] SLOW spr round 44 (radius: 5) [00:20:00 -6377.235546] SLOW spr round 45 (radius: 10) [00:20:21 -6377.235540] SLOW spr round 46 (radius: 15) [00:20:43 -6377.235540] SLOW spr round 47 (radius: 20) [00:21:07 -6377.235540] SLOW spr round 48 (radius: 25) [00:21:32 -6377.235540] Model parameter optimization (eps = 0.100000) [00:21:34] ML tree search #1, logLikelihood: -6376.936137 [00:21:34 -26246.289177] Initial branch length optimization [00:21:34 -20481.623510] Model parameter optimization (eps = 10.000000) [00:21:41 -20222.122345] AUTODETECT spr round 1 (radius: 5) [00:21:58 -15458.995398] AUTODETECT spr round 2 (radius: 10) [00:22:17 -11841.550828] AUTODETECT spr round 3 (radius: 15) [00:22:38 -9736.089535] AUTODETECT spr round 4 (radius: 20) [00:23:02 -8415.886855] AUTODETECT spr round 5 (radius: 25) [00:23:26 -8106.973182] SPR radius for FAST iterations: 25 (autodetect) [00:23:26 -8106.973182] Model parameter optimization (eps = 3.000000) [00:23:34 -8058.874085] FAST spr round 1 (radius: 25) [00:23:53 -6556.827482] FAST spr round 2 (radius: 25) [00:24:11 -6411.844527] FAST spr round 3 (radius: 25) [00:24:29 -6395.373096] FAST spr round 4 (radius: 25) [00:24:46 -6394.203736] FAST spr round 5 (radius: 25) [00:25:02 -6394.203446] Model parameter optimization (eps = 1.000000) [00:25:04 -6393.886829] SLOW spr round 1 (radius: 5) [00:25:23 -6390.461264] SLOW spr round 2 (radius: 5) [00:25:43 -6384.830885] SLOW spr round 3 (radius: 5) [00:26:02 -6384.470275] SLOW spr round 4 (radius: 5) [00:26:21 -6384.470275] SLOW spr round 5 (radius: 10) [00:26:40 -6384.470274] SLOW spr round 6 (radius: 15) [00:27:05 -6357.131736] SLOW spr round 7 (radius: 5) [00:27:28 -6356.847116] SLOW spr round 8 (radius: 5) [00:27:49 -6356.784728] SLOW spr round 9 (radius: 10) [00:28:09 -6356.318786] SLOW spr round 10 (radius: 5) [00:28:31 -6356.315159] SLOW spr round 11 (radius: 10) [00:28:51 -6356.314819] SLOW spr round 12 (radius: 15) [00:29:15 -6343.558335] SLOW spr round 13 (radius: 5) [00:29:38 -6343.526779] SLOW spr round 14 (radius: 10) [00:29:59 -6343.436257] SLOW spr round 15 (radius: 15) [00:30:22 -6343.434696] SLOW spr round 16 (radius: 20) [00:30:50 -6339.380755] SLOW spr round 17 (radius: 5) [00:31:13 -6336.853828] SLOW spr round 18 (radius: 5) [00:31:34 -6336.622844] SLOW spr round 19 (radius: 5) [00:31:54 -6336.619576] SLOW spr round 20 (radius: 10) [00:32:13 -6336.614710] SLOW spr round 21 (radius: 15) [00:32:36 -6336.614635] SLOW spr round 22 (radius: 20) [00:33:01 -6336.614621] SLOW spr round 23 (radius: 25) [00:33:28 -6333.746188] SLOW spr round 24 (radius: 5) [00:33:52 -6333.362459] SLOW spr round 25 (radius: 5) [00:34:13 -6333.361646] SLOW spr round 26 (radius: 10) [00:34:32 -6332.911490] SLOW spr round 27 (radius: 5) [00:34:53 -6332.911171] SLOW spr round 28 (radius: 10) [00:35:14 -6332.911171] SLOW spr round 29 (radius: 15) [00:35:36 -6332.911170] SLOW spr round 30 (radius: 20) [00:36:01 -6332.911170] SLOW spr round 31 (radius: 25) [00:36:28 -6332.911168] Model parameter optimization (eps = 0.100000) [00:36:29] ML tree search #2, logLikelihood: -6332.849182 [00:36:29 -26230.792138] Initial branch length optimization [00:36:30 -20461.174336] Model parameter optimization (eps = 10.000000) [00:36:37 -20227.347805] AUTODETECT spr round 1 (radius: 5) [00:36:53 -15704.180861] AUTODETECT spr round 2 (radius: 10) [00:37:12 -12139.657109] AUTODETECT spr round 3 (radius: 15) [00:37:33 -10017.022671] AUTODETECT spr round 4 (radius: 20) [00:37:58 -8117.031630] AUTODETECT spr round 5 (radius: 25) [00:38:23 -7757.817138] SPR radius for FAST iterations: 25 (autodetect) [00:38:23 -7757.817138] Model parameter optimization (eps = 3.000000) [00:38:40 -7710.860172] FAST spr round 1 (radius: 25) [00:38:59 -6441.629484] FAST spr round 2 (radius: 25) [00:39:17 -6300.841718] FAST spr round 3 (radius: 25) [00:39:34 -6269.000945] FAST spr round 4 (radius: 25) [00:39:52 -6267.057711] FAST spr round 5 (radius: 25) [00:40:08 -6267.057240] Model parameter optimization (eps = 1.000000) [00:40:11 -6266.071699] SLOW spr round 1 (radius: 5) [00:40:30 -6263.553781] SLOW spr round 2 (radius: 5) [00:40:49 -6261.544633] SLOW spr round 3 (radius: 5) [00:41:08 -6261.542273] SLOW spr round 4 (radius: 10) [00:41:28 -6258.220134] SLOW spr round 5 (radius: 5) [00:41:50 -6258.212105] SLOW spr round 6 (radius: 10) [00:42:10 -6258.211283] SLOW spr round 7 (radius: 15) [00:42:32 -6257.660719] SLOW spr round 8 (radius: 5) [00:42:54 -6257.660707] SLOW spr round 9 (radius: 10) [00:43:15 -6255.178991] SLOW spr round 10 (radius: 5) [00:43:36 -6255.152841] SLOW spr round 11 (radius: 10) [00:43:55 -6255.152571] SLOW spr round 12 (radius: 15) [00:44:18 -6255.152505] SLOW spr round 13 (radius: 20) [00:44:43 -6253.798718] SLOW spr round 14 (radius: 5) [00:45:06 -6253.705648] SLOW spr round 15 (radius: 10) [00:45:26 -6253.705510] SLOW spr round 16 (radius: 15) [00:45:49 -6253.034103] SLOW spr round 17 (radius: 5) [00:46:12 -6250.558026] SLOW spr round 18 (radius: 5) [00:46:32 -6250.548618] SLOW spr round 19 (radius: 10) [00:46:52 -6250.095806] SLOW spr round 20 (radius: 5) [00:47:13 -6250.068742] SLOW spr round 21 (radius: 10) [00:47:33 -6250.068399] SLOW spr round 22 (radius: 15) [00:47:55 -6249.926368] SLOW spr round 23 (radius: 5) [00:48:17 -6249.926356] SLOW spr round 24 (radius: 10) [00:48:37 -6249.926353] SLOW spr round 25 (radius: 15) [00:48:59 -6249.926351] SLOW spr round 26 (radius: 20) [00:49:22 -6249.802909] SLOW spr round 27 (radius: 5) [00:49:45 -6249.802879] SLOW spr round 28 (radius: 10) [00:50:05 -6249.802878] SLOW spr round 29 (radius: 15) [00:50:27 -6249.802877] SLOW spr round 30 (radius: 20) [00:50:51 -6249.802876] SLOW spr round 31 (radius: 25) [00:51:18 -6249.802876] Model parameter optimization (eps = 0.100000) [00:51:21] ML tree search #3, logLikelihood: -6248.937383 [00:51:21 -26231.322297] Initial branch length optimization [00:51:21 -20470.034256] Model parameter optimization (eps = 10.000000) [00:51:27 -20332.387385] AUTODETECT spr round 1 (radius: 5) [00:51:43 -15858.295430] AUTODETECT spr round 2 (radius: 10) [00:52:01 -11805.711500] AUTODETECT spr round 3 (radius: 15) [00:52:22 -9740.234593] AUTODETECT spr round 4 (radius: 20) [00:52:43 -9091.027179] AUTODETECT spr round 5 (radius: 25) [00:53:03 -8967.184743] SPR radius for FAST iterations: 25 (autodetect) [00:53:03 -8967.184743] Model parameter optimization (eps = 3.000000) [00:53:10 -8899.558557] FAST spr round 1 (radius: 25) [00:53:30 -7332.169192] FAST spr round 2 (radius: 25) [00:53:48 -7083.306066] FAST spr round 3 (radius: 25) [00:54:06 -7010.530558] FAST spr round 4 (radius: 25) [00:54:23 -6994.353665] FAST spr round 5 (radius: 25) [00:54:39 -6994.348886] Model parameter optimization (eps = 1.000000) [00:54:49 -6985.393528] SLOW spr round 1 (radius: 5) [00:55:08 -6976.012518] SLOW spr round 2 (radius: 5) [00:55:28 -6971.630810] SLOW spr round 3 (radius: 5) [00:55:47 -6970.434542] SLOW spr round 4 (radius: 5) [00:56:06 -6970.278833] SLOW spr round 5 (radius: 5) [00:56:24 -6970.238085] SLOW spr round 6 (radius: 10) [00:56:43 -6940.012802] SLOW spr round 7 (radius: 5) [00:57:05 -6936.626255] SLOW spr round 8 (radius: 5) [00:57:25 -6936.448263] SLOW spr round 9 (radius: 5) [00:57:44 -6936.447734] SLOW spr round 10 (radius: 10) [00:58:03 -6935.576087] SLOW spr round 11 (radius: 5) [00:58:25 -6935.574959] SLOW spr round 12 (radius: 10) [00:58:45 -6926.911166] SLOW spr round 13 (radius: 5) [00:59:06 -6924.430872] SLOW spr round 14 (radius: 5) [00:59:26 -6924.430819] SLOW spr round 15 (radius: 10) [00:59:44 -6924.430793] SLOW spr round 16 (radius: 15) [01:00:10 -6856.888802] SLOW spr round 17 (radius: 5) [01:00:33 -6834.853403] SLOW spr round 18 (radius: 5) [01:00:53 -6829.976621] SLOW spr round 19 (radius: 5) [01:01:12 -6829.974897] SLOW spr round 20 (radius: 10) [01:01:31 -6829.972816] SLOW spr round 21 (radius: 15) [01:01:56 -6802.256747] SLOW spr round 22 (radius: 5) [01:02:19 -6720.310184] SLOW spr round 23 (radius: 5) [01:02:40 -6617.325258] SLOW spr round 24 (radius: 5) [01:03:00 -6541.016767] SLOW spr round 25 (radius: 5) [01:03:19 -6522.440777] SLOW spr round 26 (radius: 5) [01:03:38 -6521.090577] SLOW spr round 27 (radius: 5) [01:03:56 -6520.935071] SLOW spr round 28 (radius: 5) [01:04:15 -6520.934754] SLOW spr round 29 (radius: 10) [01:04:33 -6519.812445] SLOW spr round 30 (radius: 5) [01:04:55 -6519.811948] SLOW spr round 31 (radius: 10) [01:05:15 -6518.844497] SLOW spr round 32 (radius: 5) [01:05:36 -6517.462343] SLOW spr round 33 (radius: 5) [01:05:56 -6516.839342] SLOW spr round 34 (radius: 5) [01:06:15 -6516.838172] SLOW spr round 35 (radius: 10) [01:06:33 -6516.837797] SLOW spr round 36 (radius: 15) [01:06:56 -6514.540725] SLOW spr round 37 (radius: 5) [01:07:19 -6513.900715] SLOW spr round 38 (radius: 5) [01:07:39 -6513.769277] SLOW spr round 39 (radius: 5) [01:07:57 -6513.768854] SLOW spr round 40 (radius: 10) [01:08:16 -6510.430497] SLOW spr round 41 (radius: 5) [01:08:37 -6510.430392] SLOW spr round 42 (radius: 10) [01:08:57 -6510.430390] SLOW spr round 43 (radius: 15) [01:09:19 -6510.430386] SLOW spr round 44 (radius: 20) [01:09:47 -6423.896560] SLOW spr round 45 (radius: 5) [01:10:10 -6374.538591] SLOW spr round 46 (radius: 5) [01:10:31 -6371.300535] SLOW spr round 47 (radius: 5) [01:10:50 -6371.299850] SLOW spr round 48 (radius: 10) [01:11:08 -6371.299729] SLOW spr round 49 (radius: 15) [01:11:32 -6359.285796] SLOW spr round 50 (radius: 5) [01:11:54 -6358.583764] SLOW spr round 51 (radius: 5) [01:12:14 -6358.582969] SLOW spr round 52 (radius: 10) [01:12:32 -6358.582968] SLOW spr round 53 (radius: 15) [01:12:55 -6358.582967] SLOW spr round 54 (radius: 20) [01:13:20 -6358.582964] SLOW spr round 55 (radius: 25) [01:13:49 -6354.294937] SLOW spr round 56 (radius: 5) [01:14:11 -6354.294928] SLOW spr round 57 (radius: 10) [01:14:32 -6354.002279] SLOW spr round 58 (radius: 5) [01:14:53 -6351.405741] SLOW spr round 59 (radius: 5) [01:15:13 -6351.405649] SLOW spr round 60 (radius: 10) [01:15:31 -6351.405587] SLOW spr round 61 (radius: 15) [01:15:54 -6351.405535] SLOW spr round 62 (radius: 20) [01:16:20 -6351.405491] SLOW spr round 63 (radius: 25) [01:16:49 -6351.405453] Model parameter optimization (eps = 0.100000) [01:16:53] ML tree search #4, logLikelihood: -6350.425770 [01:16:53 -26061.438467] Initial branch length optimization [01:16:53 -20659.145753] Model parameter optimization (eps = 10.000000) [01:17:00 -20390.785904] AUTODETECT spr round 1 (radius: 5) [01:17:16 -15595.019804] AUTODETECT spr round 2 (radius: 10) [01:17:34 -12260.824049] AUTODETECT spr round 3 (radius: 15) [01:17:54 -10288.939083] AUTODETECT spr round 4 (radius: 20) [01:18:19 -8540.234795] AUTODETECT spr round 5 (radius: 25) [01:18:41 -7839.004348] SPR radius for FAST iterations: 25 (autodetect) [01:18:41 -7839.004348] Model parameter optimization (eps = 3.000000) [01:18:46 -7808.798725] FAST spr round 1 (radius: 25) [01:19:05 -6614.950206] FAST spr round 2 (radius: 25) [01:19:22 -6438.388266] FAST spr round 3 (radius: 25) [01:19:39 -6432.231797] FAST spr round 4 (radius: 25) [01:19:56 -6429.048869] FAST spr round 5 (radius: 25) [01:20:13 -6428.191026] FAST spr round 6 (radius: 25) [01:20:29 -6428.190928] Model parameter optimization (eps = 1.000000) [01:20:30 -6427.457320] SLOW spr round 1 (radius: 5) [01:20:50 -6416.632828] SLOW spr round 2 (radius: 5) [01:21:09 -6413.796107] SLOW spr round 3 (radius: 5) [01:21:28 -6413.437116] SLOW spr round 4 (radius: 5) [01:21:46 -6413.436999] SLOW spr round 5 (radius: 10) [01:22:05 -6411.959002] SLOW spr round 6 (radius: 5) [01:22:26 -6411.958599] SLOW spr round 7 (radius: 10) [01:22:46 -6411.958529] SLOW spr round 8 (radius: 15) [01:23:10 -6364.592749] SLOW spr round 9 (radius: 5) [01:23:33 -6344.853004] SLOW spr round 10 (radius: 5) [01:23:53 -6344.849156] SLOW spr round 11 (radius: 10) [01:24:13 -6326.306973] SLOW spr round 12 (radius: 5) [01:24:35 -6323.190955] SLOW spr round 13 (radius: 5) [01:24:55 -6318.864341] SLOW spr round 14 (radius: 5) [01:25:14 -6318.204494] SLOW spr round 15 (radius: 5) [01:25:32 -6318.204464] SLOW spr round 16 (radius: 10) [01:25:51 -6318.130597] SLOW spr round 17 (radius: 15) [01:26:15 -6311.156456] SLOW spr round 18 (radius: 5) [01:26:38 -6296.567855] SLOW spr round 19 (radius: 5) [01:26:59 -6296.567773] SLOW spr round 20 (radius: 10) [01:27:18 -6296.134120] SLOW spr round 21 (radius: 5) [01:27:39 -6296.133216] SLOW spr round 22 (radius: 10) [01:27:59 -6296.133205] SLOW spr round 23 (radius: 15) [01:28:21 -6296.133203] SLOW spr round 24 (radius: 20) [01:28:47 -6296.133203] SLOW spr round 25 (radius: 25) [01:29:15 -6293.108367] SLOW spr round 26 (radius: 5) [01:29:38 -6293.108348] SLOW spr round 27 (radius: 10) [01:29:59 -6293.108347] SLOW spr round 28 (radius: 15) [01:30:22 -6293.108347] SLOW spr round 29 (radius: 20) [01:30:48 -6264.332492] SLOW spr round 30 (radius: 5) [01:31:12 -6240.516526] SLOW spr round 31 (radius: 5) [01:31:32 -6240.360767] SLOW spr round 32 (radius: 5) [01:31:51 -6240.360669] SLOW spr round 33 (radius: 10) [01:32:10 -6240.360657] SLOW spr round 34 (radius: 15) [01:32:33 -6240.360655] SLOW spr round 35 (radius: 20) [01:32:59 -6240.360655] SLOW spr round 36 (radius: 25) [01:33:29 -6240.270644] Model parameter optimization (eps = 0.100000) [01:33:32] ML tree search #5, logLikelihood: -6239.870271 [01:33:32 -26048.910543] Initial branch length optimization [01:33:32 -20501.122678] Model parameter optimization (eps = 10.000000) [01:33:39 -20225.063709] AUTODETECT spr round 1 (radius: 5) [01:33:56 -15674.627315] AUTODETECT spr round 2 (radius: 10) [01:34:14 -12398.076632] AUTODETECT spr round 3 (radius: 15) [01:34:35 -10278.423454] AUTODETECT spr round 4 (radius: 20) [01:34:59 -8879.917126] AUTODETECT spr round 5 (radius: 25) [01:35:24 -7946.220761] SPR radius for FAST iterations: 25 (autodetect) [01:35:24 -7946.220761] Model parameter optimization (eps = 3.000000) [01:35:29 -7910.089376] FAST spr round 1 (radius: 25) [01:35:49 -6377.450592] FAST spr round 2 (radius: 25) [01:36:07 -6246.209169] FAST spr round 3 (radius: 25) [01:36:25 -6238.423056] FAST spr round 4 (radius: 25) [01:36:42 -6232.897325] FAST spr round 5 (radius: 25) [01:36:59 -6231.034696] FAST spr round 6 (radius: 25) [01:37:16 -6231.009815] Model parameter optimization (eps = 1.000000) [01:37:23 -6226.720308] SLOW spr round 1 (radius: 5) [01:37:43 -6223.383514] SLOW spr round 2 (radius: 5) [01:38:02 -6220.430754] SLOW spr round 3 (radius: 5) [01:38:22 -6220.290356] SLOW spr round 4 (radius: 5) [01:38:41 -6220.289304] SLOW spr round 5 (radius: 10) [01:39:00 -6219.639206] SLOW spr round 6 (radius: 5) [01:39:22 -6219.639072] SLOW spr round 7 (radius: 10) [01:39:42 -6216.433037] SLOW spr round 8 (radius: 5) [01:40:04 -6216.283415] SLOW spr round 9 (radius: 5) [01:40:24 -6216.283310] SLOW spr round 10 (radius: 10) [01:40:43 -6216.283217] SLOW spr round 11 (radius: 15) [01:41:08 -6208.571671] SLOW spr round 12 (radius: 5) [01:41:31 -6201.593379] SLOW spr round 13 (radius: 5) [01:41:52 -6200.633617] SLOW spr round 14 (radius: 5) [01:42:11 -6200.633410] SLOW spr round 15 (radius: 10) [01:42:31 -6198.602723] SLOW spr round 16 (radius: 5) [01:42:54 -6197.734202] SLOW spr round 17 (radius: 5) [01:43:14 -6197.728577] SLOW spr round 18 (radius: 10) [01:43:33 -6197.727722] SLOW spr round 19 (radius: 15) [01:43:56 -6197.561615] SLOW spr round 20 (radius: 5) [01:44:19 -6197.561293] SLOW spr round 21 (radius: 10) [01:44:40 -6196.836630] SLOW spr round 22 (radius: 5) [01:45:01 -6196.836389] SLOW spr round 23 (radius: 10) [01:45:21 -6196.836241] SLOW spr round 24 (radius: 15) [01:45:44 -6196.836121] SLOW spr round 25 (radius: 20) [01:46:12 -6191.927136] SLOW spr round 26 (radius: 5) [01:46:35 -6188.629387] SLOW spr round 27 (radius: 5) [01:46:57 -6188.628065] SLOW spr round 28 (radius: 10) [01:47:16 -6188.627212] SLOW spr round 29 (radius: 15) [01:47:39 -6188.626621] SLOW spr round 30 (radius: 20) [01:48:05 -6188.626216] SLOW spr round 31 (radius: 25) [01:48:34 -6184.509429] SLOW spr round 32 (radius: 5) [01:48:57 -6184.508721] SLOW spr round 33 (radius: 10) [01:49:18 -6184.508602] SLOW spr round 34 (radius: 15) [01:49:41 -6184.508494] SLOW spr round 35 (radius: 20) [01:50:06 -6184.508389] SLOW spr round 36 (radius: 25) [01:50:35 -6184.508289] Model parameter optimization (eps = 0.100000) [01:50:38] ML tree search #6, logLikelihood: -6183.666414 [01:50:38 -26319.579549] Initial branch length optimization [01:50:38 -20335.639481] Model parameter optimization (eps = 10.000000) [01:50:46 -20196.555666] AUTODETECT spr round 1 (radius: 5) [01:51:03 -15719.533941] AUTODETECT spr round 2 (radius: 10) [01:51:21 -12749.525816] AUTODETECT spr round 3 (radius: 15) [01:51:43 -10581.431603] AUTODETECT spr round 4 (radius: 20) [01:52:06 -9292.803402] AUTODETECT spr round 5 (radius: 25) [01:52:30 -8682.717742] SPR radius for FAST iterations: 25 (autodetect) [01:52:30 -8682.717742] Model parameter optimization (eps = 3.000000) [01:52:37 -8598.193010] FAST spr round 1 (radius: 25) [01:52:57 -6888.111894] FAST spr round 2 (radius: 25) [01:53:15 -6757.117380] FAST spr round 3 (radius: 25) [01:53:33 -6721.823386] FAST spr round 4 (radius: 25) [01:53:50 -6716.342210] FAST spr round 5 (radius: 25) [01:54:06 -6714.386916] FAST spr round 6 (radius: 25) [01:54:23 -6714.386622] Model parameter optimization (eps = 1.000000) [01:54:28 -6692.414069] SLOW spr round 1 (radius: 5) [01:54:47 -6690.614987] SLOW spr round 2 (radius: 5) [01:55:07 -6690.502861] SLOW spr round 3 (radius: 5) [01:55:25 -6690.502379] SLOW spr round 4 (radius: 10) [01:55:45 -6689.734113] SLOW spr round 5 (radius: 5) [01:56:07 -6689.733295] SLOW spr round 6 (radius: 10) [01:56:27 -6689.733204] SLOW spr round 7 (radius: 15) [01:56:50 -6689.733121] SLOW spr round 8 (radius: 20) [01:57:18 -6681.618702] SLOW spr round 9 (radius: 5) [01:57:41 -6678.654460] SLOW spr round 10 (radius: 5) [01:58:02 -6678.654325] SLOW spr round 11 (radius: 10) [01:58:21 -6677.382287] SLOW spr round 12 (radius: 5) [01:58:43 -6677.382213] SLOW spr round 13 (radius: 10) [01:59:03 -6677.382141] SLOW spr round 14 (radius: 15) [01:59:27 -6677.382069] SLOW spr round 15 (radius: 20) [01:59:54 -6677.381997] SLOW spr round 16 (radius: 25) [02:00:25 -6628.479243] SLOW spr round 17 (radius: 5) [02:00:49 -6606.615160] SLOW spr round 18 (radius: 5) [02:01:11 -6584.399761] SLOW spr round 19 (radius: 5) [02:01:30 -6583.697851] SLOW spr round 20 (radius: 5) [02:01:49 -6583.697780] SLOW spr round 21 (radius: 10) [02:02:08 -6583.535246] SLOW spr round 22 (radius: 5) [02:02:30 -6583.535111] SLOW spr round 23 (radius: 10) [02:02:50 -6582.508269] SLOW spr round 24 (radius: 5) [02:03:12 -6580.083696] SLOW spr round 25 (radius: 5) [02:03:31 -6580.083448] SLOW spr round 26 (radius: 10) [02:03:50 -6580.083438] SLOW spr round 27 (radius: 15) [02:04:14 -6580.083437] SLOW spr round 28 (radius: 20) [02:04:40 -6580.083436] SLOW spr round 29 (radius: 25) [02:05:09 -6580.083436] Model parameter optimization (eps = 0.100000) [02:05:12] ML tree search #7, logLikelihood: -6580.071703 [02:05:12 -26223.716124] Initial branch length optimization [02:05:12 -20617.866030] Model parameter optimization (eps = 10.000000) [02:05:18 -20350.892263] AUTODETECT spr round 1 (radius: 5) [02:05:34 -15787.909660] AUTODETECT spr round 2 (radius: 10) [02:05:52 -12395.757560] AUTODETECT spr round 3 (radius: 15) [02:06:13 -9357.067995] AUTODETECT spr round 4 (radius: 20) [02:06:37 -8382.762459] AUTODETECT spr round 5 (radius: 25) [02:07:00 -8046.409906] SPR radius for FAST iterations: 25 (autodetect) [02:07:00 -8046.409906] Model parameter optimization (eps = 3.000000) [02:07:10 -7991.313681] FAST spr round 1 (radius: 25) [02:07:30 -6859.189679] FAST spr round 2 (radius: 25) [02:07:47 -6796.214550] FAST spr round 3 (radius: 25) [02:08:05 -6789.717951] FAST spr round 4 (radius: 25) [02:08:22 -6789.310064] FAST spr round 5 (radius: 25) [02:08:38 -6789.309647] Model parameter optimization (eps = 1.000000) [02:08:43 -6782.083034] SLOW spr round 1 (radius: 5) [02:09:02 -6778.652597] SLOW spr round 2 (radius: 5) [02:09:21 -6778.460864] SLOW spr round 3 (radius: 5) [02:09:40 -6778.460711] SLOW spr round 4 (radius: 10) [02:09:59 -6777.462940] SLOW spr round 5 (radius: 5) [02:10:21 -6774.734576] SLOW spr round 6 (radius: 5) [02:10:40 -6774.734497] SLOW spr round 7 (radius: 10) [02:10:59 -6774.734457] SLOW spr round 8 (radius: 15) [02:11:22 -6766.241835] SLOW spr round 9 (radius: 5) [02:11:45 -6766.241786] SLOW spr round 10 (radius: 10) [02:12:05 -6764.678275] SLOW spr round 11 (radius: 5) [02:12:27 -6764.678095] SLOW spr round 12 (radius: 10) [02:12:46 -6764.678070] SLOW spr round 13 (radius: 15) [02:13:08 -6764.678050] SLOW spr round 14 (radius: 20) [02:13:34 -6760.108993] SLOW spr round 15 (radius: 5) [02:13:57 -6733.812251] SLOW spr round 16 (radius: 5) [02:14:18 -6716.374920] SLOW spr round 17 (radius: 5) [02:14:37 -6716.374893] SLOW spr round 18 (radius: 10) [02:14:56 -6716.374877] SLOW spr round 19 (radius: 15) [02:15:19 -6714.214268] SLOW spr round 20 (radius: 5) [02:15:41 -6711.388710] SLOW spr round 21 (radius: 5) [02:16:02 -6711.387248] SLOW spr round 22 (radius: 10) [02:16:20 -6711.387176] SLOW spr round 23 (radius: 15) [02:16:43 -6711.387160] SLOW spr round 24 (radius: 20) [02:17:09 -6710.819425] SLOW spr round 25 (radius: 5) [02:17:32 -6710.819407] SLOW spr round 26 (radius: 10) [02:17:53 -6710.819396] SLOW spr round 27 (radius: 15) [02:18:15 -6710.819384] SLOW spr round 28 (radius: 20) [02:18:41 -6710.281156] SLOW spr round 29 (radius: 5) [02:19:04 -6710.278711] SLOW spr round 30 (radius: 10) [02:19:25 -6710.278144] SLOW spr round 31 (radius: 15) [02:19:48 -6710.277975] SLOW spr round 32 (radius: 20) [02:20:14 -6710.277914] SLOW spr round 33 (radius: 25) [02:20:45 -6448.613566] SLOW spr round 34 (radius: 5) [02:21:08 -6360.658311] SLOW spr round 35 (radius: 5) [02:21:29 -6296.427120] SLOW spr round 36 (radius: 5) [02:21:48 -6286.564793] SLOW spr round 37 (radius: 5) [02:22:07 -6286.348274] SLOW spr round 38 (radius: 5) [02:22:26 -6286.345279] SLOW spr round 39 (radius: 10) [02:22:46 -6233.134799] SLOW spr round 40 (radius: 5) [02:23:07 -6215.261872] SLOW spr round 41 (radius: 5) [02:23:27 -6214.846544] SLOW spr round 42 (radius: 5) [02:23:47 -6214.841199] SLOW spr round 43 (radius: 10) [02:24:05 -6212.024260] SLOW spr round 44 (radius: 5) [02:24:26 -6212.024232] SLOW spr round 45 (radius: 10) [02:24:46 -6212.024226] SLOW spr round 46 (radius: 15) [02:25:11 -6205.881319] SLOW spr round 47 (radius: 5) [02:25:33 -6205.811155] SLOW spr round 48 (radius: 10) [02:25:54 -6205.810039] SLOW spr round 49 (radius: 15) [02:26:17 -6205.809365] SLOW spr round 50 (radius: 20) [02:26:45 -6205.809286] SLOW spr round 51 (radius: 25) [02:27:15 -6203.169578] SLOW spr round 52 (radius: 5) [02:27:39 -6201.973363] SLOW spr round 53 (radius: 5) [02:27:59 -6201.972418] SLOW spr round 54 (radius: 10) [02:28:18 -6201.362613] SLOW spr round 55 (radius: 5) [02:28:39 -6201.362525] SLOW spr round 56 (radius: 10) [02:28:59 -6201.362524] SLOW spr round 57 (radius: 15) [02:29:22 -6199.102187] SLOW spr round 58 (radius: 5) [02:29:44 -6199.102179] SLOW spr round 59 (radius: 10) [02:30:05 -6199.102179] SLOW spr round 60 (radius: 15) [02:30:28 -6199.102178] SLOW spr round 61 (radius: 20) [02:30:54 -6199.102178] SLOW spr round 62 (radius: 25) [02:31:23 -6199.102178] Model parameter optimization (eps = 0.100000) [02:31:26] ML tree search #8, logLikelihood: -6198.725984 [02:31:26 -26105.603919] Initial branch length optimization [02:31:26 -20494.579772] Model parameter optimization (eps = 10.000000) [02:31:33 -20252.393091] AUTODETECT spr round 1 (radius: 5) [02:31:49 -15615.905152] AUTODETECT spr round 2 (radius: 10) [02:32:07 -12168.094089] AUTODETECT spr round 3 (radius: 15) [02:32:27 -10233.953189] AUTODETECT spr round 4 (radius: 20) [02:32:50 -8759.260895] AUTODETECT spr round 5 (radius: 25) [02:33:13 -8256.913949] SPR radius for FAST iterations: 25 (autodetect) [02:33:13 -8256.913949] Model parameter optimization (eps = 3.000000) [02:33:18 -8223.395179] FAST spr round 1 (radius: 25) [02:33:36 -6606.065552] FAST spr round 2 (radius: 25) [02:33:54 -6435.092703] FAST spr round 3 (radius: 25) [02:34:11 -6405.624072] FAST spr round 4 (radius: 25) [02:34:28 -6403.701621] FAST spr round 5 (radius: 25) [02:34:44 -6403.271895] FAST spr round 6 (radius: 25) [02:35:00 -6403.271776] Model parameter optimization (eps = 1.000000) [02:35:03 -6402.683097] SLOW spr round 1 (radius: 5) [02:35:22 -6401.189205] SLOW spr round 2 (radius: 5) [02:35:41 -6401.187311] SLOW spr round 3 (radius: 10) [02:36:00 -6399.385739] SLOW spr round 4 (radius: 5) [02:36:22 -6399.355213] SLOW spr round 5 (radius: 10) [02:36:42 -6383.605767] SLOW spr round 6 (radius: 5) [02:37:03 -6383.605595] SLOW spr round 7 (radius: 10) [02:37:23 -6383.605445] SLOW spr round 8 (radius: 15) [02:37:46 -6381.313136] SLOW spr round 9 (radius: 5) [02:38:09 -6376.819929] SLOW spr round 10 (radius: 5) [02:38:29 -6376.818640] SLOW spr round 11 (radius: 10) [02:38:48 -6376.346799] SLOW spr round 12 (radius: 5) [02:39:09 -6376.346767] SLOW spr round 13 (radius: 10) [02:39:28 -6376.346761] SLOW spr round 14 (radius: 15) [02:39:51 -6374.113398] SLOW spr round 15 (radius: 5) [02:40:14 -6354.232615] SLOW spr round 16 (radius: 5) [02:40:34 -6354.231249] SLOW spr round 17 (radius: 10) [02:40:52 -6354.230572] SLOW spr round 18 (radius: 15) [02:41:15 -6353.850099] SLOW spr round 19 (radius: 5) [02:41:37 -6353.849769] SLOW spr round 20 (radius: 10) [02:41:57 -6353.849600] SLOW spr round 21 (radius: 15) [02:42:19 -6353.849491] SLOW spr round 22 (radius: 20) [02:42:44 -6351.155137] SLOW spr round 23 (radius: 5) [02:43:06 -6351.154758] SLOW spr round 24 (radius: 10) [02:43:27 -6351.154591] SLOW spr round 25 (radius: 15) [02:43:49 -6351.154482] SLOW spr round 26 (radius: 20) [02:44:14 -6351.154400] SLOW spr round 27 (radius: 25) [02:44:41 -6347.935209] SLOW spr round 28 (radius: 5) [02:45:04 -6339.372919] SLOW spr round 29 (radius: 5) [02:45:24 -6338.941133] SLOW spr round 30 (radius: 5) [02:45:43 -6338.939200] SLOW spr round 31 (radius: 10) [02:46:01 -6338.553978] SLOW spr round 32 (radius: 5) [02:46:22 -6338.553710] SLOW spr round 33 (radius: 10) [02:46:41 -6338.553613] SLOW spr round 34 (radius: 15) [02:47:03 -6338.027931] SLOW spr round 35 (radius: 5) [02:47:25 -6337.543814] SLOW spr round 36 (radius: 5) [02:47:45 -6337.542818] SLOW spr round 37 (radius: 10) [02:48:03 -6337.542670] SLOW spr round 38 (radius: 15) [02:48:25 -6337.542646] SLOW spr round 39 (radius: 20) [02:48:51 -6337.542643] SLOW spr round 40 (radius: 25) [02:49:19 -6337.542642] Model parameter optimization (eps = 0.100000) [02:49:24] ML tree search #9, logLikelihood: -6332.894990 [02:49:24 -26120.749572] Initial branch length optimization [02:49:24 -20452.785250] Model parameter optimization (eps = 10.000000) [02:49:30 -20213.166910] AUTODETECT spr round 1 (radius: 5) [02:49:46 -16083.176251] AUTODETECT spr round 2 (radius: 10) [02:50:03 -12126.744722] AUTODETECT spr round 3 (radius: 15) [02:50:23 -9707.327652] AUTODETECT spr round 4 (radius: 20) [02:50:44 -8654.822162] AUTODETECT spr round 5 (radius: 25) [02:51:08 -8365.778691] SPR radius for FAST iterations: 25 (autodetect) [02:51:08 -8365.778691] Model parameter optimization (eps = 3.000000) [02:51:13 -8343.822599] FAST spr round 1 (radius: 25) [02:51:31 -7088.683228] FAST spr round 2 (radius: 25) [02:51:48 -6986.545013] FAST spr round 3 (radius: 25) [02:52:05 -6963.336676] FAST spr round 4 (radius: 25) [02:52:22 -6957.854864] FAST spr round 5 (radius: 25) [02:52:38 -6957.485535] FAST spr round 6 (radius: 25) [02:52:54 -6957.485279] Model parameter optimization (eps = 1.000000) [02:52:57 -6956.502523] SLOW spr round 1 (radius: 5) [02:53:15 -6954.310174] SLOW spr round 2 (radius: 5) [02:53:33 -6954.308015] SLOW spr round 3 (radius: 10) [02:53:52 -6951.834770] SLOW spr round 4 (radius: 5) [02:54:13 -6951.527332] SLOW spr round 5 (radius: 5) [02:54:32 -6951.527318] SLOW spr round 6 (radius: 10) [02:54:50 -6951.527318] SLOW spr round 7 (radius: 15) [02:55:11 -6951.197729] SLOW spr round 8 (radius: 5) [02:55:33 -6950.881481] SLOW spr round 9 (radius: 5) [02:55:52 -6950.881478] SLOW spr round 10 (radius: 10) [02:56:10 -6950.881478] SLOW spr round 11 (radius: 15) [02:56:32 -6950.881471] SLOW spr round 12 (radius: 20) [02:56:54 -6950.881471] SLOW spr round 13 (radius: 25) [02:57:18 -6950.868426] Model parameter optimization (eps = 0.100000) [02:57:25] ML tree search #10, logLikelihood: -6945.800259 [02:57:25 -26116.800430] Initial branch length optimization [02:57:25 -20623.010990] Model parameter optimization (eps = 10.000000) [02:57:32 -20378.528102] AUTODETECT spr round 1 (radius: 5) [02:57:48 -15769.794025] AUTODETECT spr round 2 (radius: 10) [02:58:06 -12234.928736] AUTODETECT spr round 3 (radius: 15) [02:58:26 -10098.539314] AUTODETECT spr round 4 (radius: 20) [02:58:47 -9501.984393] AUTODETECT spr round 5 (radius: 25) [02:59:12 -8400.136166] SPR radius for FAST iterations: 25 (autodetect) [02:59:12 -8400.136166] Model parameter optimization (eps = 3.000000) [02:59:17 -8377.947816] FAST spr round 1 (radius: 25) [02:59:36 -6831.251786] FAST spr round 2 (radius: 25) [02:59:54 -6659.790665] FAST spr round 3 (radius: 25) [03:00:11 -6646.501550] FAST spr round 4 (radius: 25) [03:00:27 -6646.497444] Model parameter optimization (eps = 1.000000) [03:00:34 -6613.707943] SLOW spr round 1 (radius: 5) [03:00:53 -6609.688859] SLOW spr round 2 (radius: 5) [03:01:11 -6607.881558] SLOW spr round 3 (radius: 5) [03:01:29 -6607.880950] SLOW spr round 4 (radius: 10) [03:01:48 -6600.112440] SLOW spr round 5 (radius: 5) [03:02:10 -6597.620157] SLOW spr round 6 (radius: 5) [03:02:29 -6597.616941] SLOW spr round 7 (radius: 10) [03:02:48 -6597.153060] SLOW spr round 8 (radius: 5) [03:03:09 -6596.792450] SLOW spr round 9 (radius: 5) [03:03:28 -6596.792305] SLOW spr round 10 (radius: 10) [03:03:46 -6596.643726] SLOW spr round 11 (radius: 5) [03:04:07 -6596.179667] SLOW spr round 12 (radius: 5) [03:04:26 -6596.179425] SLOW spr round 13 (radius: 10) [03:04:44 -6596.179351] SLOW spr round 14 (radius: 15) [03:05:07 -6590.417021] SLOW spr round 15 (radius: 5) [03:05:28 -6589.335253] SLOW spr round 16 (radius: 5) [03:05:48 -6589.329805] SLOW spr round 17 (radius: 10) [03:06:06 -6589.329680] SLOW spr round 18 (radius: 15) [03:06:30 -6459.129603] SLOW spr round 19 (radius: 5) [03:06:52 -6439.468950] SLOW spr round 20 (radius: 5) [03:07:11 -6439.468778] SLOW spr round 21 (radius: 10) [03:07:29 -6439.468766] SLOW spr round 22 (radius: 15) [03:07:52 -6439.468765] SLOW spr round 23 (radius: 20) [03:08:18 -6439.416378] SLOW spr round 24 (radius: 25) [03:08:47 -6433.924000] SLOW spr round 25 (radius: 5) [03:09:10 -6433.922163] SLOW spr round 26 (radius: 10) [03:09:29 -6433.921856] SLOW spr round 27 (radius: 15) [03:09:49 -6433.921697] SLOW spr round 28 (radius: 20) [03:10:13 -6433.921583] SLOW spr round 29 (radius: 25) [03:10:41 -6433.921498] Model parameter optimization (eps = 0.100000) [03:10:45] ML tree search #11, logLikelihood: -6433.358129 [03:10:45 -26205.687175] Initial branch length optimization [03:10:45 -20573.746962] Model parameter optimization (eps = 10.000000) [03:10:52 -20438.748929] AUTODETECT spr round 1 (radius: 5) [03:11:07 -16031.377793] AUTODETECT spr round 2 (radius: 10) [03:11:22 -11926.645272] AUTODETECT spr round 3 (radius: 15) [03:11:40 -9864.628188] AUTODETECT spr round 4 (radius: 20) [03:12:00 -9176.846225] AUTODETECT spr round 5 (radius: 25) [03:12:20 -8596.558092] SPR radius for FAST iterations: 25 (autodetect) [03:12:20 -8596.558092] Model parameter optimization (eps = 3.000000) [03:12:24 -8560.416247] FAST spr round 1 (radius: 25) [03:12:41 -7089.512055] FAST spr round 2 (radius: 25) [03:12:58 -6771.954297] FAST spr round 3 (radius: 25) [03:13:13 -6723.558139] FAST spr round 4 (radius: 25) [03:13:28 -6698.710921] FAST spr round 5 (radius: 25) [03:13:43 -6698.710094] Model parameter optimization (eps = 1.000000) [03:13:47 -6692.412218] SLOW spr round 1 (radius: 5) [03:14:04 -6669.130902] SLOW spr round 2 (radius: 5) [03:14:21 -6666.591185] SLOW spr round 3 (radius: 5) [03:14:37 -6665.781013] SLOW spr round 4 (radius: 5) [03:14:54 -6665.780231] SLOW spr round 5 (radius: 10) [03:15:12 -6665.779787] SLOW spr round 6 (radius: 15) [03:15:37 -6661.620333] SLOW spr round 7 (radius: 5) [03:16:03 -6640.035948] SLOW spr round 8 (radius: 5) [03:16:26 -6584.772651] SLOW spr round 9 (radius: 5) [03:16:48 -6572.670190] SLOW spr round 10 (radius: 5) [03:17:09 -6569.635047] SLOW spr round 11 (radius: 5) [03:17:29 -6569.635031] SLOW spr round 12 (radius: 10) [03:17:50 -6567.704370] SLOW spr round 13 (radius: 5) [03:18:15 -6565.334884] SLOW spr round 14 (radius: 5) [03:18:36 -6565.333137] SLOW spr round 15 (radius: 10) [03:18:58 -6565.333133] SLOW spr round 16 (radius: 15) [03:19:23 -6565.333130] SLOW spr round 17 (radius: 20) [03:19:52 -6483.508175] SLOW spr round 18 (radius: 5) [03:20:17 -6480.783061] SLOW spr round 19 (radius: 5) [03:20:39 -6480.781910] SLOW spr round 20 (radius: 10) [03:21:00 -6480.781604] SLOW spr round 21 (radius: 15) [03:21:25 -6480.781524] SLOW spr round 22 (radius: 20) [03:21:52 -6467.447805] SLOW spr round 23 (radius: 5) [03:22:18 -6444.898996] SLOW spr round 24 (radius: 5) [03:22:41 -6431.008871] SLOW spr round 25 (radius: 5) [03:23:02 -6430.983487] SLOW spr round 26 (radius: 10) [03:23:23 -6430.966793] SLOW spr round 27 (radius: 15) [03:23:48 -6430.965991] SLOW spr round 28 (radius: 20) [03:24:15 -6430.965677] SLOW spr round 29 (radius: 25) [03:24:44 -6425.836589] SLOW spr round 30 (radius: 5) [03:25:09 -6423.242408] SLOW spr round 31 (radius: 5) [03:25:32 -6422.088623] SLOW spr round 32 (radius: 5) [03:25:53 -6422.088546] SLOW spr round 33 (radius: 10) [03:26:13 -6420.533386] SLOW spr round 34 (radius: 5) [03:26:37 -6420.526206] SLOW spr round 35 (radius: 10) [03:27:00 -6379.686904] SLOW spr round 36 (radius: 5) [03:27:24 -6348.211252] SLOW spr round 37 (radius: 5) [03:27:46 -6340.814043] SLOW spr round 38 (radius: 5) [03:28:07 -6340.813496] SLOW spr round 39 (radius: 10) [03:28:29 -6308.823490] SLOW spr round 40 (radius: 5) [03:28:53 -6293.803885] SLOW spr round 41 (radius: 5) [03:29:15 -6293.797367] SLOW spr round 42 (radius: 10) [03:29:35 -6293.796785] SLOW spr round 43 (radius: 15) [03:30:01 -6293.096135] SLOW spr round 44 (radius: 5) [03:30:25 -6292.908006] SLOW spr round 45 (radius: 5) [03:30:46 -6292.907332] SLOW spr round 46 (radius: 10) [03:31:06 -6292.906779] SLOW spr round 47 (radius: 15) [03:31:30 -6292.906348] SLOW spr round 48 (radius: 20) [03:31:58 -6286.847967] SLOW spr round 49 (radius: 5) [03:32:23 -6223.787905] SLOW spr round 50 (radius: 5) [03:32:45 -6214.570041] SLOW spr round 51 (radius: 5) [03:33:06 -6181.670682] SLOW spr round 52 (radius: 5) [03:33:27 -6179.975945] SLOW spr round 53 (radius: 5) [03:33:47 -6179.975461] SLOW spr round 54 (radius: 10) [03:34:07 -6179.712562] SLOW spr round 55 (radius: 5) [03:34:29 -6179.706292] SLOW spr round 56 (radius: 10) [03:34:50 -6179.705864] SLOW spr round 57 (radius: 15) [03:35:14 -6179.705831] SLOW spr round 58 (radius: 20) [03:35:39 -6179.705824] SLOW spr round 59 (radius: 25) [03:36:07 -6179.705822] Model parameter optimization (eps = 0.100000) [03:36:09] ML tree search #12, logLikelihood: -6179.157984 [03:36:09 -26375.232678] Initial branch length optimization [03:36:09 -20493.717895] Model parameter optimization (eps = 10.000000) [03:36:18 -20217.143963] AUTODETECT spr round 1 (radius: 5) [03:36:35 -15333.926621] AUTODETECT spr round 2 (radius: 10) [03:36:55 -11951.854986] AUTODETECT spr round 3 (radius: 15) [03:37:18 -9511.424451] AUTODETECT spr round 4 (radius: 20) [03:37:42 -8393.714495] AUTODETECT spr round 5 (radius: 25) [03:38:07 -8101.637259] SPR radius for FAST iterations: 25 (autodetect) [03:38:07 -8101.637259] Model parameter optimization (eps = 3.000000) [03:38:13 -8026.573488] FAST spr round 1 (radius: 25) [03:38:33 -6654.331698] FAST spr round 2 (radius: 25) [03:38:52 -6443.509015] FAST spr round 3 (radius: 25) [03:39:11 -6433.248318] FAST spr round 4 (radius: 25) [03:39:29 -6425.158451] FAST spr round 5 (radius: 25) [03:39:47 -6425.157279] Model parameter optimization (eps = 1.000000) [03:39:52 -6422.328998] SLOW spr round 1 (radius: 5) [03:40:13 -6419.543398] SLOW spr round 2 (radius: 5) [03:40:33 -6419.538382] SLOW spr round 3 (radius: 10) [03:40:53 -6418.594421] SLOW spr round 4 (radius: 5) [03:41:17 -6418.592453] SLOW spr round 5 (radius: 10) [03:41:38 -6418.309399] SLOW spr round 6 (radius: 5) [03:42:01 -6416.898013] SLOW spr round 7 (radius: 5) [03:42:22 -6416.870779] SLOW spr round 8 (radius: 10) [03:42:42 -6416.869410] SLOW spr round 9 (radius: 15) [03:43:07 -6416.621159] SLOW spr round 10 (radius: 5) [03:43:31 -6416.419643] SLOW spr round 11 (radius: 5) [03:43:52 -6416.419635] SLOW spr round 12 (radius: 10) [03:44:13 -6416.419635] SLOW spr round 13 (radius: 15) [03:44:38 -6415.586699] SLOW spr round 14 (radius: 5) [03:45:01 -6415.586320] SLOW spr round 15 (radius: 10) [03:45:23 -6415.586312] SLOW spr round 16 (radius: 15) [03:45:47 -6415.586311] SLOW spr round 17 (radius: 20) [03:46:14 -6415.586311] SLOW spr round 18 (radius: 25) [03:46:43 -6415.068853] SLOW spr round 19 (radius: 5) [03:47:07 -6415.068850] SLOW spr round 20 (radius: 10) [03:47:29 -6415.068850] SLOW spr round 21 (radius: 15) [03:47:53 -6415.068849] SLOW spr round 22 (radius: 20) [03:48:20 -6415.068849] SLOW spr round 23 (radius: 25) [03:48:48 -6411.707574] SLOW spr round 24 (radius: 5) [03:49:13 -6411.707460] SLOW spr round 25 (radius: 10) [03:49:35 -6411.707455] SLOW spr round 26 (radius: 15) [03:49:58 -6411.707454] SLOW spr round 27 (radius: 20) [03:50:26 -6411.707454] SLOW spr round 28 (radius: 25) [03:50:56 -6411.707454] Model parameter optimization (eps = 0.100000) [03:50:58] ML tree search #13, logLikelihood: -6411.638332 [03:50:58 -26366.205570] Initial branch length optimization [03:50:58 -20615.083904] Model parameter optimization (eps = 10.000000) [03:51:04 -20371.978660] AUTODETECT spr round 1 (radius: 5) [03:51:22 -15153.396346] AUTODETECT spr round 2 (radius: 10) [03:51:43 -11569.721006] AUTODETECT spr round 3 (radius: 15) [03:52:05 -9514.909145] AUTODETECT spr round 4 (radius: 20) [03:52:30 -8564.404400] AUTODETECT spr round 5 (radius: 25) [03:52:59 -8178.197655] SPR radius for FAST iterations: 25 (autodetect) [03:52:59 -8178.197655] Model parameter optimization (eps = 3.000000) [03:53:07 -8150.198527] FAST spr round 1 (radius: 25) [03:53:29 -6642.046845] FAST spr round 2 (radius: 25) [03:53:49 -6434.778055] FAST spr round 3 (radius: 25) [03:54:09 -6403.500208] FAST spr round 4 (radius: 25) [03:54:28 -6385.464085] FAST spr round 5 (radius: 25) [03:54:47 -6383.402005] FAST spr round 6 (radius: 25) [03:55:05 -6383.401720] Model parameter optimization (eps = 1.000000) [03:55:09 -6381.990044] SLOW spr round 1 (radius: 5) [03:55:30 -6381.341430] SLOW spr round 2 (radius: 5) [03:55:51 -6381.339522] SLOW spr round 3 (radius: 10) [03:56:12 -6376.299629] SLOW spr round 4 (radius: 5) [03:56:35 -6376.298558] SLOW spr round 5 (radius: 10) [03:56:57 -6376.298281] SLOW spr round 6 (radius: 15) [03:57:22 -6372.221461] SLOW spr round 7 (radius: 5) [03:57:46 -6372.221429] SLOW spr round 8 (radius: 10) [03:58:08 -6371.171029] SLOW spr round 9 (radius: 5) [03:58:32 -6371.096470] SLOW spr round 10 (radius: 10) [03:58:53 -6369.989637] SLOW spr round 11 (radius: 5) [03:59:16 -6369.989629] SLOW spr round 12 (radius: 10) [03:59:38 -6369.989626] SLOW spr round 13 (radius: 15) [04:00:03 -6369.513688] SLOW spr round 14 (radius: 5) [04:00:27 -6369.513685] SLOW spr round 15 (radius: 10) [04:00:49 -6366.175230] SLOW spr round 16 (radius: 5) [04:01:12 -6366.175195] SLOW spr round 17 (radius: 10) [04:01:34 -6366.175192] SLOW spr round 18 (radius: 15) [04:01:59 -6366.175190] SLOW spr round 19 (radius: 20) [04:02:28 -6338.001654] SLOW spr round 20 (radius: 5) [04:02:54 -6309.393459] SLOW spr round 21 (radius: 5) [04:03:17 -6308.487877] SLOW spr round 22 (radius: 5) [04:03:37 -6308.484035] SLOW spr round 23 (radius: 10) [04:03:58 -6308.484022] SLOW spr round 24 (radius: 15) [04:04:23 -6308.484020] SLOW spr round 25 (radius: 20) [04:04:51 -6307.217106] SLOW spr round 26 (radius: 5) [04:05:16 -6307.217068] SLOW spr round 27 (radius: 10) [04:05:38 -6307.217066] SLOW spr round 28 (radius: 15) [04:06:03 -6307.217064] SLOW spr round 29 (radius: 20) [04:06:32 -6307.217062] SLOW spr round 30 (radius: 25) [04:07:04 -6304.574101] SLOW spr round 31 (radius: 5) [04:07:29 -6304.574099] SLOW spr round 32 (radius: 10) [04:07:51 -6304.574097] SLOW spr round 33 (radius: 15) [04:08:17 -6303.902636] SLOW spr round 34 (radius: 5) [04:08:41 -6303.894208] SLOW spr round 35 (radius: 10) [04:09:03 -6303.891664] SLOW spr round 36 (radius: 15) [04:09:28 -6303.888055] SLOW spr round 37 (radius: 20) [04:09:59 -6299.808955] SLOW spr round 38 (radius: 5) [04:10:23 -6299.807991] SLOW spr round 39 (radius: 10) [04:10:45 -6299.807369] SLOW spr round 40 (radius: 15) [04:11:10 -6299.806984] SLOW spr round 41 (radius: 20) [04:11:41 -6299.806754] SLOW spr round 42 (radius: 25) [04:12:16 -6296.608659] SLOW spr round 43 (radius: 5) [04:12:42 -6295.886939] SLOW spr round 44 (radius: 5) [04:13:04 -6295.886316] SLOW spr round 45 (radius: 10) [04:13:24 -6295.886225] SLOW spr round 46 (radius: 15) [04:13:49 -6295.886162] SLOW spr round 47 (radius: 20) [04:14:19 -6295.886110] SLOW spr round 48 (radius: 25) [04:14:55 -6295.712696] SLOW spr round 49 (radius: 5) [04:15:20 -6295.042891] SLOW spr round 50 (radius: 5) [04:15:42 -6295.042476] SLOW spr round 51 (radius: 10) [04:16:04 -6234.414912] SLOW spr round 52 (radius: 5) [04:16:28 -6210.018948] SLOW spr round 53 (radius: 5) [04:16:49 -6188.585844] SLOW spr round 54 (radius: 5) [04:17:10 -6188.130960] SLOW spr round 55 (radius: 5) [04:17:30 -6187.093430] SLOW spr round 56 (radius: 5) [04:17:50 -6187.079906] SLOW spr round 57 (radius: 10) [04:18:10 -6187.079208] SLOW spr round 58 (radius: 15) [04:18:35 -6181.589303] SLOW spr round 59 (radius: 5) [04:18:59 -6176.239889] SLOW spr round 60 (radius: 5) [04:19:20 -6176.239854] SLOW spr round 61 (radius: 10) [04:19:40 -6176.239820] SLOW spr round 62 (radius: 15) [04:20:05 -6176.239785] SLOW spr round 63 (radius: 20) [04:20:36 -6176.239751] SLOW spr round 64 (radius: 25) [04:21:11 -6176.238958] Model parameter optimization (eps = 0.100000) [04:21:12] ML tree search #14, logLikelihood: -6176.180526 [04:21:12 -26303.076753] Initial branch length optimization [04:21:12 -20556.422805] Model parameter optimization (eps = 10.000000) [04:21:20 -20314.731565] AUTODETECT spr round 1 (radius: 5) [04:21:37 -15535.744170] AUTODETECT spr round 2 (radius: 10) [04:21:57 -11990.352648] AUTODETECT spr round 3 (radius: 15) [04:22:18 -10431.350971] AUTODETECT spr round 4 (radius: 20) [04:22:42 -9104.783228] AUTODETECT spr round 5 (radius: 25) [04:23:09 -8385.625643] SPR radius for FAST iterations: 25 (autodetect) [04:23:09 -8385.625643] Model parameter optimization (eps = 3.000000) [04:23:13 -8354.108845] FAST spr round 1 (radius: 25) [04:23:34 -6589.071925] FAST spr round 2 (radius: 25) [04:23:54 -6351.080367] FAST spr round 3 (radius: 25) [04:24:13 -6331.091856] FAST spr round 4 (radius: 25) [04:24:31 -6331.090775] Model parameter optimization (eps = 1.000000) [04:24:33 -6330.444061] SLOW spr round 1 (radius: 5) [04:24:54 -6328.331512] SLOW spr round 2 (radius: 5) [04:25:15 -6327.088327] SLOW spr round 3 (radius: 5) [04:25:35 -6327.087852] SLOW spr round 4 (radius: 10) [04:25:56 -6324.243202] SLOW spr round 5 (radius: 5) [04:26:19 -6322.845888] SLOW spr round 6 (radius: 5) [04:26:40 -6322.844435] SLOW spr round 7 (radius: 10) [04:27:00 -6322.844135] SLOW spr round 8 (radius: 15) [04:27:25 -6318.754528] SLOW spr round 9 (radius: 5) [04:27:48 -6318.638450] SLOW spr round 10 (radius: 5) [04:28:10 -6318.049500] SLOW spr round 11 (radius: 5) [04:28:31 -6318.049481] SLOW spr round 12 (radius: 10) [04:28:51 -6318.049479] SLOW spr round 13 (radius: 15) [04:29:15 -6318.049479] SLOW spr round 14 (radius: 20) [04:29:44 -6317.793756] SLOW spr round 15 (radius: 5) [04:30:08 -6317.793755] SLOW spr round 16 (radius: 10) [04:30:30 -6317.741392] SLOW spr round 17 (radius: 15) [04:30:54 -6317.741392] SLOW spr round 18 (radius: 20) [04:31:23 -6317.741392] SLOW spr round 19 (radius: 25) [04:31:57 -6315.709014] SLOW spr round 20 (radius: 5) [04:32:22 -6315.699068] SLOW spr round 21 (radius: 10) [04:32:45 -6315.698404] SLOW spr round 22 (radius: 15) [04:33:10 -6315.698362] SLOW spr round 23 (radius: 20) [04:33:40 -6315.698359] SLOW spr round 24 (radius: 25) [04:34:14 -6315.698359] Model parameter optimization (eps = 0.100000) [04:34:16] ML tree search #15, logLikelihood: -6315.330456 [04:34:16 -26326.794842] Initial branch length optimization [04:34:16 -20691.329911] Model parameter optimization (eps = 10.000000) [04:34:23 -20436.229806] AUTODETECT spr round 1 (radius: 5) [04:34:41 -15997.228042] AUTODETECT spr round 2 (radius: 10) [04:35:01 -11902.718030] AUTODETECT spr round 3 (radius: 15) [04:35:25 -10077.612179] AUTODETECT spr round 4 (radius: 20) [04:35:51 -8420.491740] AUTODETECT spr round 5 (radius: 25) [04:36:20 -8113.953921] SPR radius for FAST iterations: 25 (autodetect) [04:36:20 -8113.953921] Model parameter optimization (eps = 3.000000) [04:36:24 -8086.990713] FAST spr round 1 (radius: 25) [04:36:44 -6390.470843] FAST spr round 2 (radius: 25) [04:37:04 -6221.861591] FAST spr round 3 (radius: 25) [04:37:24 -6212.327452] FAST spr round 4 (radius: 25) [04:37:43 -6212.325465] Model parameter optimization (eps = 1.000000) [04:37:45 -6211.829112] SLOW spr round 1 (radius: 5) [04:38:07 -6203.512724] SLOW spr round 2 (radius: 5) [04:38:28 -6202.864595] SLOW spr round 3 (radius: 5) [04:38:50 -6202.780915] SLOW spr round 4 (radius: 10) [04:39:10 -6202.780019] SLOW spr round 5 (radius: 15) [04:39:36 -6202.646723] SLOW spr round 6 (radius: 5) [04:40:00 -6202.645402] SLOW spr round 7 (radius: 10) [04:40:22 -6202.644994] SLOW spr round 8 (radius: 15) [04:40:47 -6199.619296] SLOW spr round 9 (radius: 5) [04:41:11 -6199.442389] SLOW spr round 10 (radius: 5) [04:41:32 -6199.442208] SLOW spr round 11 (radius: 10) [04:41:53 -6199.442055] SLOW spr round 12 (radius: 15) [04:42:18 -6199.441912] SLOW spr round 13 (radius: 20) [04:42:48 -6197.737707] SLOW spr round 14 (radius: 5) [04:43:12 -6196.160090] SLOW spr round 15 (radius: 5) [04:43:35 -6196.158976] SLOW spr round 16 (radius: 10) [04:43:55 -6196.158740] SLOW spr round 17 (radius: 15) [04:44:20 -6196.158579] SLOW spr round 18 (radius: 20) [04:44:48 -6196.158437] SLOW spr round 19 (radius: 25) [04:45:21 -6194.203205] SLOW spr round 20 (radius: 5) [04:45:45 -6194.196308] SLOW spr round 21 (radius: 10) [04:46:07 -6193.091710] SLOW spr round 22 (radius: 5) [04:46:31 -6192.491803] SLOW spr round 23 (radius: 5) [04:46:52 -6189.827412] SLOW spr round 24 (radius: 5) [04:47:12 -6189.827319] SLOW spr round 25 (radius: 10) [04:47:32 -6189.827303] SLOW spr round 26 (radius: 15) [04:47:57 -6189.827300] SLOW spr round 27 (radius: 20) [04:48:25 -6189.827300] SLOW spr round 28 (radius: 25) [04:48:57 -6189.827300] Model parameter optimization (eps = 0.100000) [04:48:58] ML tree search #16, logLikelihood: -6189.785873 [04:48:58 -26137.652091] Initial branch length optimization [04:48:59 -20553.502671] Model parameter optimization (eps = 10.000000) [04:49:09 -20399.491684] AUTODETECT spr round 1 (radius: 5) [04:49:27 -15557.249287] AUTODETECT spr round 2 (radius: 10) [04:49:47 -11829.546967] AUTODETECT spr round 3 (radius: 15) [04:50:09 -9967.243838] AUTODETECT spr round 4 (radius: 20) [04:50:31 -8453.800931] AUTODETECT spr round 5 (radius: 25) [04:50:57 -7985.827214] SPR radius for FAST iterations: 25 (autodetect) [04:50:57 -7985.827214] Model parameter optimization (eps = 3.000000) [04:51:04 -7958.014266] FAST spr round 1 (radius: 25) [04:51:24 -6595.759689] FAST spr round 2 (radius: 25) [04:51:44 -6364.343716] FAST spr round 3 (radius: 25) [04:52:02 -6342.276512] FAST spr round 4 (radius: 25) [04:52:20 -6340.261240] FAST spr round 5 (radius: 25) [04:52:38 -6340.259580] Model parameter optimization (eps = 1.000000) [04:52:41 -6337.744018] SLOW spr round 1 (radius: 5) [04:53:02 -6336.692731] SLOW spr round 2 (radius: 5) [04:53:22 -6336.690519] SLOW spr round 3 (radius: 10) [04:53:42 -6336.690415] SLOW spr round 4 (radius: 15) [04:54:07 -6335.007831] SLOW spr round 5 (radius: 5) [04:54:32 -6334.190065] SLOW spr round 6 (radius: 5) [04:54:54 -6330.951328] SLOW spr round 7 (radius: 5) [04:55:14 -6330.951026] SLOW spr round 8 (radius: 10) [04:55:35 -6330.950946] SLOW spr round 9 (radius: 15) [04:55:58 -6330.950912] SLOW spr round 10 (radius: 20) [04:56:24 -6330.950893] SLOW spr round 11 (radius: 25) [04:56:52 -6330.950880] Model parameter optimization (eps = 0.100000) [04:56:54] ML tree search #17, logLikelihood: -6330.848042 [04:56:54 -26061.437997] Initial branch length optimization [04:56:54 -20392.295884] Model parameter optimization (eps = 10.000000) [04:57:02 -20158.857558] AUTODETECT spr round 1 (radius: 5) [04:57:19 -15852.587698] AUTODETECT spr round 2 (radius: 10) [04:57:38 -11923.364370] AUTODETECT spr round 3 (radius: 15) [04:58:01 -9805.973044] AUTODETECT spr round 4 (radius: 20) [04:58:26 -8350.882953] AUTODETECT spr round 5 (radius: 25) [04:58:51 -7913.274484] SPR radius for FAST iterations: 25 (autodetect) [04:58:51 -7913.274484] Model parameter optimization (eps = 3.000000) [04:58:57 -7894.973023] FAST spr round 1 (radius: 25) [04:59:18 -6682.896598] FAST spr round 2 (radius: 25) [04:59:38 -6404.137871] FAST spr round 3 (radius: 25) [04:59:57 -6368.933231] FAST spr round 4 (radius: 25) [05:00:15 -6365.958895] FAST spr round 5 (radius: 25) [05:00:33 -6365.936191] Model parameter optimization (eps = 1.000000) [05:00:37 -6356.877254] SLOW spr round 1 (radius: 5) [05:00:58 -6351.272033] SLOW spr round 2 (radius: 5) [05:01:18 -6351.119517] SLOW spr round 3 (radius: 5) [05:01:38 -6351.118637] SLOW spr round 4 (radius: 10) [05:01:58 -6350.248705] SLOW spr round 5 (radius: 5) [05:02:22 -6349.075118] SLOW spr round 6 (radius: 5) [05:02:43 -6349.032525] SLOW spr round 7 (radius: 10) [05:03:04 -6346.980055] SLOW spr round 8 (radius: 5) [05:03:27 -6346.980010] SLOW spr round 9 (radius: 10) [05:03:48 -6346.980007] SLOW spr round 10 (radius: 15) [05:04:12 -6309.590309] SLOW spr round 11 (radius: 5) [05:04:37 -6309.588729] SLOW spr round 12 (radius: 10) [05:04:59 -6308.669421] SLOW spr round 13 (radius: 5) [05:05:22 -6308.662360] SLOW spr round 14 (radius: 10) [05:05:43 -6308.662031] SLOW spr round 15 (radius: 15) [05:06:08 -6308.661806] SLOW spr round 16 (radius: 20) [05:06:37 -6306.061855] SLOW spr round 17 (radius: 5) [05:07:01 -6301.309872] SLOW spr round 18 (radius: 5) [05:07:24 -6300.299746] SLOW spr round 19 (radius: 5) [05:07:44 -6300.299444] SLOW spr round 20 (radius: 10) [05:08:05 -6296.759849] SLOW spr round 21 (radius: 5) [05:08:28 -6296.692674] SLOW spr round 22 (radius: 10) [05:08:49 -6295.853206] SLOW spr round 23 (radius: 5) [05:09:12 -6295.852584] SLOW spr round 24 (radius: 10) [05:09:33 -6295.851974] SLOW spr round 25 (radius: 15) [05:09:58 -6295.665436] SLOW spr round 26 (radius: 5) [05:10:21 -6295.661668] SLOW spr round 27 (radius: 10) [05:10:43 -6295.660561] SLOW spr round 28 (radius: 15) [05:11:08 -6295.660061] SLOW spr round 29 (radius: 20) [05:11:36 -6295.659716] SLOW spr round 30 (radius: 25) [05:12:06 -6293.436392] SLOW spr round 31 (radius: 5) [05:12:31 -6293.392511] SLOW spr round 32 (radius: 10) [05:12:54 -6292.761396] SLOW spr round 33 (radius: 5) [05:13:17 -6292.760719] SLOW spr round 34 (radius: 10) [05:13:38 -6292.760306] SLOW spr round 35 (radius: 15) [05:14:03 -6292.554291] SLOW spr round 36 (radius: 5) [05:14:27 -6292.553941] SLOW spr round 37 (radius: 10) [05:14:49 -6292.553612] SLOW spr round 38 (radius: 15) [05:15:14 -6292.553294] SLOW spr round 39 (radius: 20) [05:15:42 -6292.343654] SLOW spr round 40 (radius: 5) [05:16:07 -6291.885202] SLOW spr round 41 (radius: 5) [05:16:29 -6291.884640] SLOW spr round 42 (radius: 10) [05:16:49 -6291.884338] SLOW spr round 43 (radius: 15) [05:17:15 -6291.884085] SLOW spr round 44 (radius: 20) [05:17:42 -6291.883844] SLOW spr round 45 (radius: 25) [05:18:11 -6291.883613] Model parameter optimization (eps = 0.100000) [05:18:15] ML tree search #18, logLikelihood: -6289.402118 [05:18:15 -26333.010488] Initial branch length optimization [05:18:15 -20504.751634] Model parameter optimization (eps = 10.000000) [05:18:25 -20364.431064] AUTODETECT spr round 1 (radius: 5) [05:18:43 -15527.049447] AUTODETECT spr round 2 (radius: 10) [05:19:04 -11106.187255] AUTODETECT spr round 3 (radius: 15) [05:19:26 -9087.636792] AUTODETECT spr round 4 (radius: 20) [05:19:49 -8768.611583] AUTODETECT spr round 5 (radius: 25) [05:20:13 -8584.599680] SPR radius for FAST iterations: 25 (autodetect) [05:20:13 -8584.599680] Model parameter optimization (eps = 3.000000) [05:20:19 -8550.087730] FAST spr round 1 (radius: 25) [05:20:39 -7337.781718] FAST spr round 2 (radius: 25) [05:20:59 -7262.538519] FAST spr round 3 (radius: 25) [05:21:17 -7256.486951] FAST spr round 4 (radius: 25) [05:21:35 -7189.408919] FAST spr round 5 (radius: 25) [05:21:54 -7129.665531] FAST spr round 6 (radius: 25) [05:22:12 -7129.665310] Model parameter optimization (eps = 1.000000) [05:22:15 -7126.065019] SLOW spr round 1 (radius: 5) [05:22:36 -7119.405157] SLOW spr round 2 (radius: 5) [05:22:56 -7119.404638] SLOW spr round 3 (radius: 10) [05:23:17 -7114.843174] SLOW spr round 4 (radius: 5) [05:23:40 -7113.367384] SLOW spr round 5 (radius: 5) [05:24:02 -7113.121020] SLOW spr round 6 (radius: 5) [05:24:22 -7113.120765] SLOW spr round 7 (radius: 10) [05:24:42 -7113.120713] SLOW spr round 8 (radius: 15) [05:25:06 -7111.804015] SLOW spr round 9 (radius: 5) [05:25:29 -7111.803924] SLOW spr round 10 (radius: 10) [05:25:51 -7111.803922] SLOW spr round 11 (radius: 15) [05:26:15 -7111.803922] SLOW spr round 12 (radius: 20) [05:26:40 -7111.024251] SLOW spr round 13 (radius: 5) [05:27:04 -7110.788523] SLOW spr round 14 (radius: 5) [05:27:25 -7110.788506] SLOW spr round 15 (radius: 10) [05:27:45 -7110.788503] SLOW spr round 16 (radius: 15) [05:28:09 -7110.788502] SLOW spr round 17 (radius: 20) [05:28:34 -7110.788502] SLOW spr round 18 (radius: 25) [05:29:01 -7091.057936] SLOW spr round 19 (radius: 5) [05:29:25 -7090.205055] SLOW spr round 20 (radius: 5) [05:29:47 -7089.901744] SLOW spr round 21 (radius: 5) [05:30:08 -7089.899933] SLOW spr round 22 (radius: 10) [05:30:28 -7089.899538] SLOW spr round 23 (radius: 15) [05:30:52 -7089.899423] SLOW spr round 24 (radius: 20) [05:31:18 -7089.899385] SLOW spr round 25 (radius: 25) [05:31:45 -7085.788494] SLOW spr round 26 (radius: 5) [05:32:10 -7081.474597] SLOW spr round 27 (radius: 5) [05:32:32 -7080.247543] SLOW spr round 28 (radius: 5) [05:32:52 -7080.246729] SLOW spr round 29 (radius: 10) [05:33:12 -7080.246585] SLOW spr round 30 (radius: 15) [05:33:37 -7080.246485] SLOW spr round 31 (radius: 20) [05:34:03 -7080.246395] SLOW spr round 32 (radius: 25) [05:34:31 -7080.246312] Model parameter optimization (eps = 0.100000) [05:34:33] ML tree search #19, logLikelihood: -7080.091536 [05:34:33 -26277.911210] Initial branch length optimization [05:34:34 -20694.342018] Model parameter optimization (eps = 10.000000) [05:34:41 -20445.405853] AUTODETECT spr round 1 (radius: 5) [05:34:58 -15712.668074] AUTODETECT spr round 2 (radius: 10) [05:35:18 -12153.328283] AUTODETECT spr round 3 (radius: 15) [05:35:41 -9833.783755] AUTODETECT spr round 4 (radius: 20) [05:36:07 -8964.556407] AUTODETECT spr round 5 (radius: 25) [05:36:32 -8061.221113] SPR radius for FAST iterations: 25 (autodetect) [05:36:32 -8061.221113] Model parameter optimization (eps = 3.000000) [05:36:40 -8029.980277] FAST spr round 1 (radius: 25) [05:37:00 -6894.413408] FAST spr round 2 (radius: 25) [05:37:21 -6774.325425] FAST spr round 3 (radius: 25) [05:37:40 -6768.362522] FAST spr round 4 (radius: 25) [05:37:58 -6766.282497] FAST spr round 5 (radius: 25) [05:38:16 -6765.289907] FAST spr round 6 (radius: 25) [05:38:35 -6765.289709] Model parameter optimization (eps = 1.000000) [05:38:40 -6754.335105] SLOW spr round 1 (radius: 5) [05:39:01 -6751.565513] SLOW spr round 2 (radius: 5) [05:39:22 -6749.657761] SLOW spr round 3 (radius: 5) [05:39:43 -6747.413687] SLOW spr round 4 (radius: 5) [05:40:05 -6746.590001] SLOW spr round 5 (radius: 5) [05:40:25 -6746.589296] SLOW spr round 6 (radius: 10) [05:40:47 -6742.583548] SLOW spr round 7 (radius: 5) [05:41:10 -6742.219052] SLOW spr round 8 (radius: 5) [05:41:32 -6742.218990] SLOW spr round 9 (radius: 10) [05:41:53 -6742.218968] SLOW spr round 10 (radius: 15) [05:42:18 -6742.014603] SLOW spr round 11 (radius: 5) [05:42:43 -6742.008489] SLOW spr round 12 (radius: 10) [05:43:05 -6740.893641] SLOW spr round 13 (radius: 5) [05:43:29 -6740.893611] SLOW spr round 14 (radius: 10) [05:43:50 -6740.893605] SLOW spr round 15 (radius: 15) [05:44:14 -6740.893605] SLOW spr round 16 (radius: 20) [05:44:41 -6735.224571] SLOW spr round 17 (radius: 5) [05:45:07 -6724.599927] SLOW spr round 18 (radius: 5) [05:45:30 -6719.873113] SLOW spr round 19 (radius: 5) [05:45:51 -6719.685025] SLOW spr round 20 (radius: 5) [05:46:11 -6719.683820] SLOW spr round 21 (radius: 10) [05:46:32 -6719.115986] SLOW spr round 22 (radius: 5) [05:46:55 -6718.855761] SLOW spr round 23 (radius: 5) [05:47:17 -6718.852045] SLOW spr round 24 (radius: 10) [05:47:38 -6718.850670] SLOW spr round 25 (radius: 15) [05:48:02 -6718.850153] SLOW spr round 26 (radius: 20) [05:48:29 -6718.849962] SLOW spr round 27 (radius: 25) [05:49:01 -6709.536636] SLOW spr round 28 (radius: 5) [05:49:27 -6686.021737] SLOW spr round 29 (radius: 5) [05:49:49 -6684.710125] SLOW spr round 30 (radius: 5) [05:50:10 -6684.496469] SLOW spr round 31 (radius: 5) [05:50:29 -6684.496194] SLOW spr round 32 (radius: 10) [05:50:49 -6684.496163] SLOW spr round 33 (radius: 15) [05:51:14 -6684.496160] SLOW spr round 34 (radius: 20) [05:51:40 -6684.496160] SLOW spr round 35 (radius: 25) [05:52:11 -6684.076169] SLOW spr round 36 (radius: 5) [05:52:36 -6683.278547] SLOW spr round 37 (radius: 5) [05:52:57 -6682.983478] SLOW spr round 38 (radius: 5) [05:53:17 -6682.982406] SLOW spr round 39 (radius: 10) [05:53:37 -6682.982386] SLOW spr round 40 (radius: 15) [05:54:02 -6682.982385] SLOW spr round 41 (radius: 20) [05:54:28 -6680.564311] SLOW spr round 42 (radius: 5) [05:54:52 -6680.068571] SLOW spr round 43 (radius: 5) [05:55:14 -6680.068570] SLOW spr round 44 (radius: 10) [05:55:34 -6680.068568] SLOW spr round 45 (radius: 15) [05:55:58 -6680.068568] SLOW spr round 46 (radius: 20) [05:56:24 -6680.068568] SLOW spr round 47 (radius: 25) [05:56:54 -6679.856046] SLOW spr round 48 (radius: 5) [05:57:18 -6679.852599] SLOW spr round 49 (radius: 10) [05:57:40 -6679.852599] SLOW spr round 50 (radius: 15) [05:58:04 -6679.852599] SLOW spr round 51 (radius: 20) [05:58:30 -6679.852599] SLOW spr round 52 (radius: 25) [05:59:01 -6679.220211] SLOW spr round 53 (radius: 5) [05:59:24 -6679.220197] SLOW spr round 54 (radius: 10) [05:59:46 -6679.220197] SLOW spr round 55 (radius: 15) [06:00:09 -6679.220197] SLOW spr round 56 (radius: 20) [06:00:35 -6679.220197] SLOW spr round 57 (radius: 25) [06:01:05 -6679.220197] Model parameter optimization (eps = 0.100000) [06:01:10] ML tree search #20, logLikelihood: -6677.421208 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.094851,0.644918) (0.000095,0.264994) (0.475391,0.755020) (0.429664,1.349601) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -6176.180526 AIC score: 14746.361051 / AICc score: 2882758.361051 / BIC score: 15996.654409 Free parameters (model + branch lengths): 1197 WARNING: Number of free parameters (K=1197) is larger than alignment size (n=21). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 285 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TF72/3_mltree/Q8TF72.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TF72/3_mltree/Q8TF72.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TF72/3_mltree/Q8TF72.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TF72/3_mltree/Q8TF72.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TF72/3_mltree/Q8TF72.raxml.log Analysis started: 07-Jul-2021 18:33:56 / finished: 08-Jul-2021 00:35:06 Elapsed time: 21670.227 seconds Consumed energy: 1377.994 Wh (= 7 km in an electric car, or 34 km with an e-scooter!)