RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 30-Jun-2021 17:46:52 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TD26/2_msa/Q8TD26_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TD26/3_mltree/Q8TD26 --seed 2 --threads 7 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (7 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TD26/2_msa/Q8TD26_trimmed_msa.fasta [00:00:00] Loaded alignment with 999 taxa and 552 sites WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_G1NMS5_G1NMS5_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_H0ZSY1_H0ZSY1_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_U3J3N6_U3J3N6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_A0A087RH92_A0A087RH92_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_A0A093I3V1_A0A093I3V1_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_A0A091GGJ8_A0A091GGJ8_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_A0A218VD67_A0A218VD67_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_A0A226MYT2_A0A226MYT2_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q06A37_CHD7_CHICK_9031 and tr_G1NF51_G1NF51_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q06A37_CHD7_CHICK_9031 and tr_A0A226NGH8_A0A226NGH8_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q06A37_CHD7_CHICK_9031 and tr_A0A226P320_A0A226P320_COLVI_9014 are exactly identical! WARNING: Sequences sp_A2AJK6_CHD7_MOUSE_10090 and tr_H0XA30_H0XA30_OTOGA_30611 are exactly identical! WARNING: Sequences sp_A2AJK6_CHD7_MOUSE_10090 and tr_A0A2U3XDI1_A0A2U3XDI1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_B1AR17_B1AR17_MOUSE_10090 and tr_F1LPP8_F1LPP8_RAT_10116 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_M3XM71_M3XM71_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_G1RWP3_G1RWP3_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_G1NWL0_G1NWL0_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_G3HWS4_G3HWS4_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A2I2YBF5_A0A2I2YBF5_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_H2NKK3_H2NKK3_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_G1TK69_G1TK69_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_E2QUS7_E2QUS7_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_H2Q7Y2_H2Q7Y2_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_F6XQ51_F6XQ51_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_W5QEF2_W5QEF2_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and sp_Q9JIX5_CHD8_RAT_10116 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A287DG80_A0A287DG80_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_H0WLC8_H0WLC8_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and sp_Q9HCK8_CHD8_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_F7GN20_F7GN20_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_G5BFV2_G5BFV2_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_G3T3K8_G3T3K8_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_F6Y0N8_F6Y0N8_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_F1S8J5_F1S8J5_PIG_9823 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_G1LIG8_G1LIG8_AILME_9646 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_G7P9P0_G7P9P0_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_F1MLB2_F1MLB2_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_L5K6G5_L5K6G5_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_M3WJL6_M3WJL6_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A096NNR1_A0A096NNR1_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A0D9RVB3_A0A0D9RVB3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A1S3GAS9_A0A1S3GAS9_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A1U7TS11_A0A1U7TS11_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A1U8CSF2_A0A1U8CSF2_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A2K5KJZ1_A0A2K5KJZ1_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A2K6BQX6_A0A2K6BQX6_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A2K5Z6Z1_A0A2K5Z6Z1_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A2R9BXW5_A0A2R9BXW5_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A2U4BBW0_A0A2U4BBW0_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A2U3W2E1_A0A2U3W2E1_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A2Y9QGA4_A0A2Y9QGA4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A2Y9KE42_A0A2Y9KE42_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A2Y9PDK7_A0A2Y9PDK7_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A2Y9TF35_A0A2Y9TF35_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A384DQV0_A0A384DQV0_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q09XV5_CHD8_MOUSE_10090 and tr_A0A383ZZN3_A0A383ZZN3_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_E9PU01_E9PU01_RAT_10116 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_L5KI24_L5KI24_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A2U4AL47_A0A2U4AL47_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A384BGQ1_A0A384BGQ1_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_G1PRY7_G1PRY7_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_G3R983_G3R983_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_G1SYG5_G1SYG5_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_I3MIA8_I3MIA8_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_F6PP91_F6PP91_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_G5C4V8_G5C4V8_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_F6VM65_F6VM65_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_F1RT88_F1RT88_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_D2H2C4_D2H2C4_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_G7PBW9_G7PBW9_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_M3W133_M3W133_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_A0A096MKL0_A0A096MKL0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_A0A1U7UHD7_A0A1U7UHD7_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_A0A2K5L151_A0A2K5L151_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_A0A2K6DIJ5_A0A2K6DIJ5_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_A0A2K5ZN30_A0A2K5ZN30_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3XTB4_M3XTB4_MUSPF_9669 and tr_A0A384DD93_A0A384DD93_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_G1SEJ5_G1SEJ5_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_E2RDK8_E2RDK8_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_W5Q8C1_W5Q8C1_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_H0WK24_H0WK24_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_A0A287BSL8_A0A287BSL8_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_G1MCV0_G1MCV0_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_E1BDZ3_E1BDZ3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_M3X5P4_M3X5P4_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_A0A3Q0EAH3_A0A3Q0EAH3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_A0A2U4B4B3_A0A2U4B4B3_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_A0A2U3ZB58_A0A2U3ZB58_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_A0A2Y9KL29_A0A2Y9KL29_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_A0A2Y9LN54_A0A2Y9LN54_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_A0A2Y9SPT2_A0A2Y9SPT2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_A0A384D1P0_A0A384D1P0_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XW03_M3XW03_MUSPF_9669 and tr_A0A383YXR1_A0A383YXR1_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YBT4_M3YBT4_MUSPF_9669 and tr_A0A2Y9L1Y3_A0A2Y9L1Y3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z1X1_M3Z1X1_MUSPF_9669 and tr_F1PTH3_F1PTH3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z1X1_M3Z1X1_MUSPF_9669 and tr_G1LSE8_G1LSE8_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z1X1_M3Z1X1_MUSPF_9669 and tr_M3W0K5_M3W0K5_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Z1X1_M3Z1X1_MUSPF_9669 and tr_A0A2U3WRT6_A0A2U3WRT6_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z1X1_M3Z1X1_MUSPF_9669 and tr_A0A2Y9IQC9_A0A2Y9IQC9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z1X1_M3Z1X1_MUSPF_9669 and tr_A0A384CNA1_A0A384CNA1_URSMA_29073 are exactly identical! WARNING: Sequences tr_B7Z002_B7Z002_DROME_7227 and tr_A0A1W4V277_A0A1W4V277_DROFC_30025 are exactly identical! WARNING: Sequences tr_G1QJW6_G1QJW6_NOMLE_61853 and tr_G3RS86_G3RS86_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QJW6_G1QJW6_NOMLE_61853 and tr_H2NQW2_H2NQW2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QJW6_G1QJW6_NOMLE_61853 and tr_A0A2J8MWW0_A0A2J8MWW0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QJW6_G1QJW6_NOMLE_61853 and tr_I3M7C9_I3M7C9_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1QJW6_G1QJW6_NOMLE_61853 and sp_Q3L8U1_CHD9_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QJW6_G1QJW6_NOMLE_61853 and tr_F7GT65_F7GT65_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QJW6_G1QJW6_NOMLE_61853 and tr_A0A096NI99_A0A096NI99_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QJW6_G1QJW6_NOMLE_61853 and tr_A0A0D9QZ34_A0A0D9QZ34_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QJW6_G1QJW6_NOMLE_61853 and tr_A0A2K5MNA8_A0A2K5MNA8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QJW6_G1QJW6_NOMLE_61853 and tr_A0A2K6BWQ4_A0A2K6BWQ4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QJW6_G1QJW6_NOMLE_61853 and tr_A0A2K6AEC3_A0A2K6AEC3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QJW6_G1QJW6_NOMLE_61853 and tr_A0A2R9BXC3_A0A2R9BXC3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_G3RCF2_G3RCF2_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_G1TM73_G1TM73_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_H2QC61_H2QC61_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_I3MTW5_I3MTW5_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_H0W109_H0W109_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and sp_Q12873_CHD3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_A0A1D5RBC8_A0A1D5RBC8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_F7E9J1_F7E9J1_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_A0A2I3MAB0_A0A2I3MAB0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_A0A091CJU8_A0A091CJU8_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_A0A0D9RFE3_A0A0D9RFE3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_A0A3Q0E7Q2_A0A3Q0E7Q2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_A0A2K5NL31_A0A2K5NL31_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_A0A2K6AMM4_A0A2K6AMM4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_A0A2K5YLF9_A0A2K5YLF9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1PQI5_G1PQI5_MYOLU_59463 and tr_A0A2R9AVH2_A0A2R9AVH2_PANPA_9597 are exactly identical! WARNING: Sequences tr_D8S9B2_D8S9B2_SELML_88036 and tr_D8SVR2_D8SVR2_SELML_88036 are exactly identical! WARNING: Sequences tr_D8SK03_D8SK03_SELML_88036 and tr_D8T4M1_D8T4M1_SELML_88036 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_H2P1Y6_H2P1Y6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_G1T391_G1T391_RABIT_9986 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_H2QKD4_H2QKD4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_W5NX60_W5NX60_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_I3MKX5_I3MKX5_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_H0WKQ0_H0WKQ0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and sp_Q8TD26_CHD6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_F6VZQ8_F6VZQ8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_F1SDV1_F1SDV1_PIG_9823 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_G7PGC6_G7PGC6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_A0A096NXC8_A0A096NXC8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_A0A0D9RNE8_A0A0D9RNE8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_A0A1S2ZYS3_A0A1S2ZYS3_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_A0A1S3EPQ8_A0A1S3EPQ8_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_A0A2K5N4Q1_A0A2K5N4Q1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_A0A2K6DIS6_A0A2K6DIS6_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_A0A2K5YK89_A0A2K5YK89_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_A0A2U4C1U4_A0A2U4C1U4_TURTR_9739 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_A0A2Y9PXM2_A0A2Y9PXM2_DELLE_9749 are exactly identical! WARNING: Sequences tr_G3RBG1_G3RBG1_GORGO_9595 and tr_A0A2Y9ECQ2_A0A2Y9ECQ2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_H2PQD9_H2PQD9_PONAB_9601 and sp_Q9P2D1_CHD7_HUMAN_9606 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_F7CN25_F7CN25_HORSE_9796 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_W5Q8X2_W5Q8X2_SHEEP_9940 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_G3SLZ2_G3SLZ2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_A0A286ZJL1_A0A286ZJL1_PIG_9823 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_L5JZA2_L5JZA2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_A0A2U4C2U0_A0A2U4C2U0_TURTR_9739 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_A0A2U3ZDU7_A0A2U3ZDU7_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_A0A2U3Y5L2_A0A2U3Y5L2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_A0A2Y9DK95_A0A2Y9DK95_TRIMA_127582 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_A0A2Y9Q6N5_A0A2Y9Q6N5_DELLE_9749 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_A0A2Y9SYN4_A0A2Y9SYN4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_A0A383YU91_A0A383YU91_BALAS_310752 are exactly identical! WARNING: Sequences tr_F7ABK0_F7ABK0_MONDO_13616 and tr_G3WNE2_G3WNE2_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7FS88_F7FS88_MONDO_13616 and tr_G3W1S9_G3W1S9_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7G444_F7G444_MONDO_13616 and tr_G3WDH6_G3WDH6_SARHA_9305 are exactly identical! WARNING: Sequences tr_D3ZAP7_D3ZAP7_RAT_10116 and tr_A0A2Y9QNA6_A0A2Y9QNA6_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M4AP84_M4AP84_XIPMA_8083 and tr_A0A087YD97_A0A087YD97_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A368Q8P3_A0A368Q8P3_SETIT_4555 and tr_A0A2T7EZR6_A0A2T7EZR6_9POAL_1504633 are exactly identical! WARNING: Sequences tr_A0A087ZSL5_A0A087ZSL5_APIME_7460 and tr_A0A0N0BJI5_A0A0N0BJI5_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A087ZSL5_A0A087ZSL5_APIME_7460 and tr_A0A0L7QSS6_A0A0L7QSS6_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A087ZSL5_A0A087ZSL5_APIME_7460 and tr_A0A2A3EEQ6_A0A2A3EEQ6_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NHA9_A0A158NHA9_ATTCE_12957 and tr_A0A195B760_A0A195B760_9HYME_520822 are exactly identical! WARNING: Sequences tr_H0VTU5_H0VTU5_CAVPO_10141 and tr_G5BCX2_G5BCX2_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A0E0HLU3_A0A0E0HLU3_ORYNI_4536 and tr_B8B3I5_B8B3I5_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0HLU3_A0A0E0HLU3_ORYNI_4536 and tr_I1Q029_I1Q029_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0HLU3_A0A0E0HLU3_ORYNI_4536 and tr_A0A0E0PUC5_A0A0E0PUC5_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0HLU3_A0A0E0HLU3_ORYNI_4536 and tr_A0A0D3GDJ7_A0A0D3GDJ7_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0HLU3_A0A0E0HLU3_ORYNI_4536 and tr_A0A0E0A5X8_A0A0E0A5X8_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0I582_A0A0E0I582_ORYNI_4536 and tr_B8B5J6_B8B5J6_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0I582_A0A0E0I582_ORYNI_4536 and tr_I1QCW0_I1QCW0_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0I582_A0A0E0I582_ORYNI_4536 and tr_A0A0E0QC99_A0A0E0QC99_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0I582_A0A0E0I582_ORYNI_4536 and tr_A0A0E0ANT9_A0A0E0ANT9_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0K0JJC4_A0A0K0JJC4_BRUMA_6279 and tr_A0A0R3QNK8_A0A0R3QNK8_9BILA_42155 are exactly identical! WARNING: Sequences tr_K7G0A6_K7G0A6_PELSI_13735 and tr_U3JST3_U3JST3_FICAL_59894 are exactly identical! WARNING: Sequences tr_K7G0A6_K7G0A6_PELSI_13735 and tr_U3IEG0_U3IEG0_ANAPL_8839 are exactly identical! WARNING: Sequences tr_K7G0A6_K7G0A6_PELSI_13735 and tr_A0A091JCT2_A0A091JCT2_EGRGA_188379 are exactly identical! WARNING: Sequences tr_K7G0A6_K7G0A6_PELSI_13735 and tr_A0A093GSQ4_A0A093GSQ4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G3T8W0_G3T8W0_LOXAF_9785 and tr_A0A2Y9QFU8_A0A2Y9QFU8_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0YYE6_H0YYE6_TAEGU_59729 and tr_U3KDK5_U3KDK5_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0YYE6_H0YYE6_TAEGU_59729 and tr_U3J7L5_U3J7L5_ANAPL_8839 are exactly identical! WARNING: Sequences tr_H0YYE6_H0YYE6_TAEGU_59729 and tr_A0A093PJ44_A0A093PJ44_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0YYE6_H0YYE6_TAEGU_59729 and tr_A0A091VU66_A0A091VU66_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0YYE6_H0YYE6_TAEGU_59729 and tr_A0A087R9N9_A0A087R9N9_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0YYE6_H0YYE6_TAEGU_59729 and tr_A0A093JYR2_A0A093JYR2_STRCA_441894 are exactly identical! WARNING: Sequences tr_H0YYE6_H0YYE6_TAEGU_59729 and tr_A0A091HQ28_A0A091HQ28_CALAN_9244 are exactly identical! WARNING: Sequences tr_H0YYE6_H0YYE6_TAEGU_59729 and tr_A0A1V4JET2_A0A1V4JET2_PATFA_372326 are exactly identical! WARNING: Sequences tr_H0YYE6_H0YYE6_TAEGU_59729 and tr_A0A218UJ72_A0A218UJ72_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZAW5_H0ZAW5_TAEGU_59729 and tr_U3KFQ2_U3KFQ2_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZAW5_H0ZAW5_TAEGU_59729 and tr_A0A218UY65_A0A218UY65_9PASE_299123 are exactly identical! WARNING: Sequences tr_A8Y205_A8Y205_CAEBR_6238 and tr_A0A2G5VUP2_A0A2G5VUP2_9PELO_1611254 are exactly identical! WARNING: Sequences tr_C4V724_C4V724_NOSCE_578460 and tr_A0A0F9WI63_A0A0F9WI63_9MICR_40302 are exactly identical! WARNING: Sequences tr_M4CUC0_M4CUC0_BRARP_51351 and tr_A0A078IWX8_A0A078IWX8_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4CUC0_M4CUC0_BRARP_51351 and tr_A0A0D3DVI4_A0A0D3DVI4_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4F7Z7_M4F7Z7_BRARP_51351 and tr_A0A078HIM5_A0A078HIM5_BRANA_3708 are exactly identical! WARNING: Sequences tr_T1K2K7_T1K2K7_TETUR_32264 and tr_T1K2L0_T1K2L0_TETUR_32264 are exactly identical! WARNING: Sequences tr_T1L413_T1L413_TETUR_32264 and tr_T1L420_T1L420_TETUR_32264 are exactly identical! WARNING: Sequences tr_U3K709_U3K709_FICAL_59894 and tr_A0A091IZ23_A0A091IZ23_EGRGA_188379 are exactly identical! WARNING: Sequences tr_U3K709_U3K709_FICAL_59894 and tr_A0A091VHJ7_A0A091VHJ7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3K709_U3K709_FICAL_59894 and tr_A0A087QWW4_A0A087QWW4_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3K709_U3K709_FICAL_59894 and tr_A0A091WD23_A0A091WD23_OPIHO_30419 are exactly identical! WARNING: Sequences tr_U3K709_U3K709_FICAL_59894 and tr_A0A099ZXZ2_A0A099ZXZ2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_R0KUD7_R0KUD7_NOSB1_578461 and tr_R0M8L7_R0M8L7_NOSB1_578461 are exactly identical! WARNING: Sequences tr_V2YXY8_V2YXY8_MONRO_1381753 and tr_A0A0W0FHB3_A0A0W0FHB3_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2PWN4_W2PWN4_PHYPN_761204 and tr_W2KQL2_W2KQL2_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2PXZ9_W2PXZ9_PHYPN_761204 and tr_A0A0W8CJ28_A0A0W8CJ28_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2Q8C4_W2Q8C4_PHYPN_761204 and tr_A0A0W8BVV1_A0A0W8BVV1_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2Q8C4_W2Q8C4_PHYPN_761204 and tr_W2L8Y6_W2L8Y6_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A0D2UK31_A0A0D2UK31_GOSRA_29730 and tr_A0A1U8HVK9_A0A1U8HVK9_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A151MGZ5_A0A151MGZ5_ALLMI_8496 and tr_A0A3Q0HJC0_A0A3Q0HJC0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MNQ4_A0A151MNQ4_ALLMI_8496 and tr_A0A1U7RFP8_A0A1U7RFP8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N3K5_A0A151N3K5_ALLMI_8496 and tr_A0A3Q0GQX2_A0A3Q0GQX2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N497_A0A151N497_ALLMI_8496 and tr_A0A3Q0FS67_A0A3Q0FS67_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A2I0LIP1_A0A2I0LIP1_COLLI_8932 and tr_A0A1V4KNJ8_A0A1V4KNJ8_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MDG8_A0A2I0MDG8_COLLI_8932 and tr_A0A1V4JED6_A0A1V4JED6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MWZ8_A0A2I0MWZ8_COLLI_8932 and tr_A0A1V4KI37_A0A1V4KI37_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A165AAN1_A0A165AAN1_9HOMO_1314777 and tr_A0A166H941_A0A166H941_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A1S3X5P7_A0A1S3X5P7_TOBAC_4097 and tr_A0A1U7V3P4_A0A1U7V3P4_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AIJ4_A0A1S4AIJ4_TOBAC_4097 and tr_A0A314L8W0_A0A314L8W0_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4AIJ4_A0A1S4AIJ4_TOBAC_4097 and tr_A0A1U7YBE1_A0A1U7YBE1_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3LZK3_A0A1S3LZK3_SALSA_8030 and tr_A0A060WQN6_A0A060WQN6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226N9I4_A0A226N9I4_CALSU_9009 and tr_A0A226PWV2_A0A226PWV2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0S1G1_A0A2D0S1G1_ICTPU_7998 and tr_A0A2D0S2Z3_A0A2D0S2Z3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G2ZAQ4_A0A2G2ZAQ4_CAPAN_4072 and tr_A0A2G3C7W9_A0A2G3C7W9_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G4SFC2_A0A2G4SFC2_9FUNG_1340429 and tr_A0A367JVU5_A0A367JVU5_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2G4SFC2_A0A2G4SFC2_9FUNG_1340429 and tr_A0A367KD95_A0A367KD95_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2G4SYE9_A0A2G4SYE9_9FUNG_1340429 and tr_A0A367JD84_A0A367JD84_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2U4AIL9_A0A2U4AIL9_TURTR_9739 and tr_A0A2Y9Q0T0_A0A2Y9Q0T0_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 239 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TD26/3_mltree/Q8TD26.raxml.reduced.phy Alignment comprises 1 partitions and 551 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 552 / 551 Gaps: 2.21 % Invariant sites: 1.63 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TD26/3_mltree/Q8TD26.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 7 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 999 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 79 / 6320 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -701780.347498] Initial branch length optimization [00:00:04 -562939.511372] Model parameter optimization (eps = 10.000000) [00:00:31 -561443.715884] AUTODETECT spr round 1 (radius: 5) [00:02:15 -362798.140526] AUTODETECT spr round 2 (radius: 10) [00:04:29 -254087.244211] AUTODETECT spr round 3 (radius: 15) [00:06:19 -219702.190954] AUTODETECT spr round 4 (radius: 20) [00:08:26 -183373.966303] AUTODETECT spr round 5 (radius: 25) [00:10:57 -163322.896449] SPR radius for FAST iterations: 25 (autodetect) [00:10:57 -163322.896449] Model parameter optimization (eps = 3.000000) [00:11:16 -163198.326397] FAST spr round 1 (radius: 25) [00:13:05 -132634.292458] FAST spr round 2 (radius: 25) [00:14:32 -129722.099029] FAST spr round 3 (radius: 25) [00:15:57 -129551.851415] FAST spr round 4 (radius: 25) [00:17:13 -129546.739141] FAST spr round 5 (radius: 25) [00:18:28 -129546.739123] Model parameter optimization (eps = 1.000000) [00:18:37 -129542.513981] SLOW spr round 1 (radius: 5) [00:20:06 -129526.152950] SLOW spr round 2 (radius: 5) [00:21:33 -129522.571650] SLOW spr round 3 (radius: 5) [00:22:59 -129522.071388] SLOW spr round 4 (radius: 5) [00:24:25 -129520.116554] SLOW spr round 5 (radius: 5) [00:25:50 -129520.116524] SLOW spr round 6 (radius: 10) [00:27:26 -129519.662205] SLOW spr round 7 (radius: 5) [00:29:11 -129519.662114] SLOW spr round 8 (radius: 10) [00:30:51 -129519.662112] SLOW spr round 9 (radius: 15) [00:33:01 -129519.662110] SLOW spr round 10 (radius: 20) [00:36:26 -129519.377561] SLOW spr round 11 (radius: 5) [00:38:20 -129519.377559] SLOW spr round 12 (radius: 10) [00:40:07 -129519.377557] SLOW spr round 13 (radius: 15) [00:42:16 -129519.377556] SLOW spr round 14 (radius: 20) [00:45:40 -129519.377554] SLOW spr round 15 (radius: 25) [00:50:37 -129519.377552] Model parameter optimization (eps = 0.100000) [00:50:42] ML tree search #1, logLikelihood: -129519.331125 [00:50:42 -693279.947869] Initial branch length optimization [00:50:45 -553799.664822] Model parameter optimization (eps = 10.000000) [00:51:08 -552383.775020] AUTODETECT spr round 1 (radius: 5) [00:52:49 -357750.714911] AUTODETECT spr round 2 (radius: 10) [00:55:04 -254486.338843] AUTODETECT spr round 3 (radius: 15) [00:56:53 -203768.738181] AUTODETECT spr round 4 (radius: 20) [00:59:11 -173543.446004] AUTODETECT spr round 5 (radius: 25) [01:01:58 -167992.683685] SPR radius for FAST iterations: 25 (autodetect) [01:01:58 -167992.683685] Model parameter optimization (eps = 3.000000) [01:02:13 -167912.044688] FAST spr round 1 (radius: 25) [01:04:03 -141954.004524] FAST spr round 2 (radius: 25) [01:05:34 -140793.767882] FAST spr round 3 (radius: 25) [01:06:56 -140742.127635] FAST spr round 4 (radius: 25) [01:08:12 -140737.497639] FAST spr round 5 (radius: 25) [01:09:32 -139539.875132] FAST spr round 6 (radius: 25) [01:10:57 -136798.260324] FAST spr round 7 (radius: 25) [01:12:22 -135356.313303] FAST spr round 8 (radius: 25) [01:13:48 -133058.881410] FAST spr round 9 (radius: 25) [01:15:12 -130703.135825] FAST spr round 10 (radius: 25) [01:16:34 -129632.568698] FAST spr round 11 (radius: 25) [01:17:49 -129586.874574] FAST spr round 12 (radius: 25) [01:19:01 -129586.408877] FAST spr round 13 (radius: 25) [01:20:11 -129586.408873] Model parameter optimization (eps = 1.000000) [01:20:24 -129577.206222] SLOW spr round 1 (radius: 5) [01:21:47 -129564.476077] SLOW spr round 2 (radius: 5) [01:23:12 -129545.397425] SLOW spr round 3 (radius: 5) [01:24:38 -129533.077752] SLOW spr round 4 (radius: 5) [01:26:03 -129533.077451] SLOW spr round 5 (radius: 10) [01:27:39 -129526.428335] SLOW spr round 6 (radius: 5) [01:29:24 -129526.160414] SLOW spr round 7 (radius: 5) [01:30:56 -129526.160383] SLOW spr round 8 (radius: 10) [01:32:33 -129525.861429] SLOW spr round 9 (radius: 5) [01:34:16 -129525.861336] SLOW spr round 10 (radius: 10) [01:35:56 -129525.861228] SLOW spr round 11 (radius: 15) [01:38:06 -129525.568722] SLOW spr round 12 (radius: 5) [01:39:59 -129525.568669] SLOW spr round 13 (radius: 10) [01:41:46 -129525.568616] SLOW spr round 14 (radius: 15) [01:43:55 -129525.568601] SLOW spr round 15 (radius: 20) [01:47:17 -129525.568600] SLOW spr round 16 (radius: 25) [01:52:17 -129525.568599] Model parameter optimization (eps = 0.100000) [01:52:22] ML tree search #2, logLikelihood: -129525.550508 [01:52:23 -695327.378265] Initial branch length optimization [01:52:26 -556917.265913] Model parameter optimization (eps = 10.000000) [01:52:58 -555462.800081] AUTODETECT spr round 1 (radius: 5) [01:54:41 -364583.321878] AUTODETECT spr round 2 (radius: 10) [01:56:42 -261864.694171] AUTODETECT spr round 3 (radius: 15) [01:58:32 -212267.254610] AUTODETECT spr round 4 (radius: 20) [02:00:39 -181670.727897] AUTODETECT spr round 5 (radius: 25) [02:02:52 -166910.320162] SPR radius for FAST iterations: 25 (autodetect) [02:02:52 -166910.320162] Model parameter optimization (eps = 3.000000) [02:03:14 -166786.995149] FAST spr round 1 (radius: 25) [02:05:08 -132112.343112] FAST spr round 2 (radius: 25) [02:06:43 -129672.478558] FAST spr round 3 (radius: 25) [02:08:10 -129584.858645] FAST spr round 4 (radius: 25) [02:09:30 -129578.589962] FAST spr round 5 (radius: 25) [02:10:45 -129578.586596] Model parameter optimization (eps = 1.000000) [02:10:52 -129578.046798] SLOW spr round 1 (radius: 5) [02:12:20 -129552.188729] SLOW spr round 2 (radius: 5) [02:13:50 -129543.440438] SLOW spr round 3 (radius: 5) [02:15:19 -129539.992675] SLOW spr round 4 (radius: 5) [02:16:50 -129537.095819] SLOW spr round 5 (radius: 5) [02:18:17 -129537.095138] SLOW spr round 6 (radius: 10) [02:19:52 -129537.095057] SLOW spr round 7 (radius: 15) [02:22:04 -129536.497536] SLOW spr round 8 (radius: 5) [02:23:56 -129536.497510] SLOW spr round 9 (radius: 10) [02:25:42 -129536.497445] SLOW spr round 10 (radius: 15) [02:27:50 -129536.497419] SLOW spr round 11 (radius: 20) [02:31:09 -129536.497393] SLOW spr round 12 (radius: 25) [02:36:02 -129536.497392] Model parameter optimization (eps = 0.100000) [02:36:09] ML tree search #3, logLikelihood: -129536.462795 [02:36:09 -700264.512144] Initial branch length optimization [02:36:13 -559446.949178] Model parameter optimization (eps = 10.000000) [02:36:34 -558036.501206] AUTODETECT spr round 1 (radius: 5) [02:38:16 -361650.013784] AUTODETECT spr round 2 (radius: 10) [02:40:26 -265522.656038] AUTODETECT spr round 3 (radius: 15) [02:42:21 -209541.293574] AUTODETECT spr round 4 (radius: 20) [02:44:20 -170988.044619] AUTODETECT spr round 5 (radius: 25) [02:46:39 -163504.348823] SPR radius for FAST iterations: 25 (autodetect) [02:46:39 -163504.348823] Model parameter optimization (eps = 3.000000) [02:46:56 -163422.999669] FAST spr round 1 (radius: 25) [02:48:48 -131821.449534] FAST spr round 2 (radius: 25) [02:50:18 -129730.132631] FAST spr round 3 (radius: 25) [02:51:39 -129598.366429] FAST spr round 4 (radius: 25) [02:52:56 -129580.447278] FAST spr round 5 (radius: 25) [02:54:11 -129577.947277] FAST spr round 6 (radius: 25) [02:55:24 -129577.947236] Model parameter optimization (eps = 1.000000) [02:55:37 -129571.769147] SLOW spr round 1 (radius: 5) [02:57:04 -129533.600541] SLOW spr round 2 (radius: 5) [02:58:31 -129525.207110] SLOW spr round 3 (radius: 5) [02:59:57 -129523.009445] SLOW spr round 4 (radius: 5) [03:01:24 -129523.009312] SLOW spr round 5 (radius: 10) [03:03:00 -129522.554925] SLOW spr round 6 (radius: 5) [03:04:46 -129522.554869] SLOW spr round 7 (radius: 10) [03:06:25 -129522.554845] SLOW spr round 8 (radius: 15) [03:08:33 -129522.275716] SLOW spr round 9 (radius: 5) [03:10:27 -129522.275692] SLOW spr round 10 (radius: 10) [03:12:12 -129522.275680] SLOW spr round 11 (radius: 15) [03:14:18 -129522.275676] SLOW spr round 12 (radius: 20) [03:17:37 -129522.275675] SLOW spr round 13 (radius: 25) [03:22:20 -129522.275674] Model parameter optimization (eps = 0.100000) [03:22:27] ML tree search #4, logLikelihood: -129522.095049 [03:22:27 -694985.492691] Initial branch length optimization [03:22:31 -554544.039356] Model parameter optimization (eps = 10.000000) [03:22:53 -553129.617626] AUTODETECT spr round 1 (radius: 5) [03:24:32 -359360.188362] AUTODETECT spr round 2 (radius: 10) [03:26:43 -258945.591490] AUTODETECT spr round 3 (radius: 15) [03:28:34 -208079.103908] AUTODETECT spr round 4 (radius: 20) [03:30:41 -174483.532923] AUTODETECT spr round 5 (radius: 25) [03:33:00 -161499.861055] SPR radius for FAST iterations: 25 (autodetect) [03:33:00 -161499.861055] Model parameter optimization (eps = 3.000000) [03:33:20 -161396.998383] FAST spr round 1 (radius: 25) [03:35:16 -131576.040927] FAST spr round 2 (radius: 25) [03:36:43 -129642.697526] FAST spr round 3 (radius: 25) [03:38:05 -129574.289614] FAST spr round 4 (radius: 25) [03:39:25 -129552.609990] FAST spr round 5 (radius: 25) [03:40:40 -129552.444798] FAST spr round 6 (radius: 25) [03:41:53 -129552.444316] Model parameter optimization (eps = 1.000000) [03:42:03 -129551.243705] SLOW spr round 1 (radius: 5) [03:43:32 -129538.187458] SLOW spr round 2 (radius: 5) [03:44:59 -129537.263324] SLOW spr round 3 (radius: 5) [03:46:24 -129535.380204] SLOW spr round 4 (radius: 5) [03:47:51 -129535.379641] SLOW spr round 5 (radius: 10) [03:49:26 -129535.379110] SLOW spr round 6 (radius: 15) [03:51:37 -129534.805205] SLOW spr round 7 (radius: 5) [03:53:30 -129534.804778] SLOW spr round 8 (radius: 10) [03:55:15 -129534.804353] SLOW spr round 9 (radius: 15) [03:57:24 -129534.803928] SLOW spr round 10 (radius: 20) [04:00:43 -129534.803503] SLOW spr round 11 (radius: 25) [04:05:32 -129534.689047] SLOW spr round 12 (radius: 5) [04:07:26 -129534.688622] SLOW spr round 13 (radius: 10) [04:09:13 -129534.688197] SLOW spr round 14 (radius: 15) [04:11:20 -129534.687773] SLOW spr round 15 (radius: 20) [04:14:39 -129534.687349] SLOW spr round 16 (radius: 25) [04:19:28 -129534.686925] Model parameter optimization (eps = 0.100000) [04:19:32] ML tree search #5, logLikelihood: -129534.653210 [04:19:32 -693201.104432] Initial branch length optimization [04:19:36 -558269.608194] Model parameter optimization (eps = 10.000000) [04:20:02 -556858.225695] AUTODETECT spr round 1 (radius: 5) [04:21:45 -362047.201070] AUTODETECT spr round 2 (radius: 10) [04:23:57 -257794.410056] AUTODETECT spr round 3 (radius: 15) [04:25:50 -197267.210510] AUTODETECT spr round 4 (radius: 20) [04:27:50 -165500.626241] AUTODETECT spr round 5 (radius: 25) [04:30:17 -155967.905501] SPR radius for FAST iterations: 25 (autodetect) [04:30:17 -155967.905501] Model parameter optimization (eps = 3.000000) [04:30:33 -155869.619460] FAST spr round 1 (radius: 25) [04:32:16 -130793.953841] FAST spr round 2 (radius: 25) [04:33:43 -129736.438223] FAST spr round 3 (radius: 25) [04:35:05 -129590.992058] FAST spr round 4 (radius: 25) [04:36:22 -129584.568666] FAST spr round 5 (radius: 25) [04:37:36 -129584.568598] Model parameter optimization (eps = 1.000000) [04:37:45 -129580.987643] SLOW spr round 1 (radius: 5) [04:39:13 -129545.657591] SLOW spr round 2 (radius: 5) [04:40:40 -129540.214614] SLOW spr round 3 (radius: 5) [04:42:06 -129540.211738] SLOW spr round 4 (radius: 10) [04:43:40 -129540.211271] SLOW spr round 5 (radius: 15) [04:45:47 -129539.926824] SLOW spr round 6 (radius: 5) [04:47:37 -129539.926814] SLOW spr round 7 (radius: 10) [04:49:22 -129539.926812] SLOW spr round 8 (radius: 15) [04:51:26 -129539.926811] SLOW spr round 9 (radius: 20) [04:54:36 -129539.926810] SLOW spr round 10 (radius: 25) [04:59:15 -129539.926809] Model parameter optimization (eps = 0.100000) [04:59:24] ML tree search #6, logLikelihood: -129539.527407 [04:59:24 -696717.619157] Initial branch length optimization [04:59:29 -560286.954914] Model parameter optimization (eps = 10.000000) [04:59:52 -558893.483658] AUTODETECT spr round 1 (radius: 5) [05:01:31 -376739.031494] AUTODETECT spr round 2 (radius: 10) [05:03:38 -267542.637337] AUTODETECT spr round 3 (radius: 15) [05:05:28 -214358.385774] AUTODETECT spr round 4 (radius: 20) [05:07:23 -176214.136070] AUTODETECT spr round 5 (radius: 25) [05:09:41 -159424.306440] SPR radius for FAST iterations: 25 (autodetect) [05:09:41 -159424.306440] Model parameter optimization (eps = 3.000000) [05:10:05 -159316.281906] FAST spr round 1 (radius: 25) [05:11:47 -131761.515429] FAST spr round 2 (radius: 25) [05:13:12 -129709.272917] FAST spr round 3 (radius: 25) [05:14:33 -129594.877733] FAST spr round 4 (radius: 25) [05:15:52 -129555.475307] FAST spr round 5 (radius: 25) [05:17:05 -129555.475180] Model parameter optimization (eps = 1.000000) [05:17:17 -129552.487591] SLOW spr round 1 (radius: 5) [05:18:43 -129535.316791] SLOW spr round 2 (radius: 5) [05:20:09 -129534.535881] SLOW spr round 3 (radius: 5) [05:21:35 -129534.535196] SLOW spr round 4 (radius: 10) [05:23:09 -129534.235951] SLOW spr round 5 (radius: 5) [05:24:54 -129534.235646] SLOW spr round 6 (radius: 10) [05:26:34 -129534.235512] SLOW spr round 7 (radius: 15) [05:28:42 -129533.949098] SLOW spr round 8 (radius: 5) [05:30:34 -129533.948943] SLOW spr round 9 (radius: 10) [05:32:19 -129533.948760] SLOW spr round 10 (radius: 15) [05:34:26 -129533.948734] SLOW spr round 11 (radius: 20) [05:37:45 -129533.948733] SLOW spr round 12 (radius: 25) [05:42:26 -129533.948732] Model parameter optimization (eps = 0.100000) [05:42:31] ML tree search #7, logLikelihood: -129533.863119 [05:42:31 -704369.041008] Initial branch length optimization [05:42:35 -559169.072929] Model parameter optimization (eps = 10.000000) [05:42:58 -557683.559626] AUTODETECT spr round 1 (radius: 5) [05:44:38 -373307.510145] AUTODETECT spr round 2 (radius: 10) [05:46:38 -259255.452692] AUTODETECT spr round 3 (radius: 15) [05:48:34 -191204.438939] AUTODETECT spr round 4 (radius: 20) [05:50:42 -174684.267625] AUTODETECT spr round 5 (radius: 25) [05:53:15 -163086.131047] SPR radius for FAST iterations: 25 (autodetect) [05:53:15 -163086.131047] Model parameter optimization (eps = 3.000000) [05:53:33 -162954.050663] FAST spr round 1 (radius: 25) [05:55:16 -132442.079424] FAST spr round 2 (radius: 25) [05:56:42 -129812.501506] FAST spr round 3 (radius: 25) [05:58:01 -129586.585009] FAST spr round 4 (radius: 25) [05:59:18 -129565.316344] FAST spr round 5 (radius: 25) [06:00:30 -129565.159618] FAST spr round 6 (radius: 25) [06:01:41 -129565.159553] Model parameter optimization (eps = 1.000000) [06:01:49 -129564.279988] SLOW spr round 1 (radius: 5) [06:03:14 -129536.838044] SLOW spr round 2 (radius: 5) [06:04:38 -129532.146689] SLOW spr round 3 (radius: 5) [06:06:01 -129532.146682] SLOW spr round 4 (radius: 10) [06:07:37 -129527.964127] SLOW spr round 5 (radius: 5) [06:09:19 -129524.232034] SLOW spr round 6 (radius: 5) [06:10:52 -129523.281170] SLOW spr round 7 (radius: 5) [06:12:20 -129523.281143] SLOW spr round 8 (radius: 10) [06:13:54 -129523.281138] SLOW spr round 9 (radius: 15) [06:16:03 -129522.983343] SLOW spr round 10 (radius: 5) [06:17:52 -129522.983340] SLOW spr round 11 (radius: 10) [06:19:37 -129522.983338] SLOW spr round 12 (radius: 15) [06:21:44 -129522.983336] SLOW spr round 13 (radius: 20) [06:25:02 -129522.983335] SLOW spr round 14 (radius: 25) [06:29:50 -129522.983333] Model parameter optimization (eps = 0.100000) [06:29:56] ML tree search #8, logLikelihood: -129522.856945 [06:29:56 -697072.098698] Initial branch length optimization [06:30:00 -557695.741729] Model parameter optimization (eps = 10.000000) [06:30:23 -556324.616413] AUTODETECT spr round 1 (radius: 5) [06:32:01 -370733.754717] AUTODETECT spr round 2 (radius: 10) [06:34:04 -268685.195013] AUTODETECT spr round 3 (radius: 15) [06:35:50 -213896.246440] AUTODETECT spr round 4 (radius: 20) [06:37:58 -170854.439959] AUTODETECT spr round 5 (radius: 25) [06:39:59 -163316.196629] SPR radius for FAST iterations: 25 (autodetect) [06:40:00 -163316.196629] Model parameter optimization (eps = 3.000000) [06:40:23 -163215.933974] FAST spr round 1 (radius: 25) [06:42:13 -132006.896821] FAST spr round 2 (radius: 25) [06:43:40 -129757.680180] FAST spr round 3 (radius: 25) [06:45:01 -129622.859575] FAST spr round 4 (radius: 25) [06:46:17 -129602.178477] FAST spr round 5 (radius: 25) [06:47:31 -129602.178373] Model parameter optimization (eps = 1.000000) [06:47:41 -129599.160628] SLOW spr round 1 (radius: 5) [06:49:13 -129567.624855] SLOW spr round 2 (radius: 5) [06:50:41 -129557.256357] SLOW spr round 3 (radius: 5) [06:52:06 -129553.958578] SLOW spr round 4 (radius: 5) [06:53:31 -129553.134214] SLOW spr round 5 (radius: 5) [06:54:54 -129553.134091] SLOW spr round 6 (radius: 10) [06:56:27 -129551.829403] SLOW spr round 7 (radius: 5) [06:58:10 -129551.828877] SLOW spr round 8 (radius: 10) [06:59:48 -129551.828872] SLOW spr round 9 (radius: 15) [07:01:56 -129551.828871] SLOW spr round 10 (radius: 20) [07:05:14 -129551.828870] SLOW spr round 11 (radius: 25) [07:09:54 -129551.828869] Model parameter optimization (eps = 0.100000) [07:09:58] ML tree search #9, logLikelihood: -129551.793338 [07:09:58 -704018.760437] Initial branch length optimization [07:10:02 -562731.183747] Model parameter optimization (eps = 10.000000) [07:10:24 -561203.173269] AUTODETECT spr round 1 (radius: 5) [07:12:02 -367131.496177] AUTODETECT spr round 2 (radius: 10) [07:14:08 -260501.002866] AUTODETECT spr round 3 (radius: 15) [07:16:01 -203303.732900] AUTODETECT spr round 4 (radius: 20) [07:18:12 -166998.783812] AUTODETECT spr round 5 (radius: 25) [07:20:50 -156499.682795] SPR radius for FAST iterations: 25 (autodetect) [07:20:50 -156499.682795] Model parameter optimization (eps = 3.000000) [07:21:08 -156418.230418] FAST spr round 1 (radius: 25) [07:22:51 -131039.545694] FAST spr round 2 (radius: 25) [07:24:21 -129632.088727] FAST spr round 3 (radius: 25) [07:25:40 -129583.075316] FAST spr round 4 (radius: 25) [07:26:55 -129578.617054] FAST spr round 5 (radius: 25) [07:28:08 -129578.616598] Model parameter optimization (eps = 1.000000) [07:28:19 -129577.074776] SLOW spr round 1 (radius: 5) [07:29:45 -129533.730556] SLOW spr round 2 (radius: 5) [07:31:09 -129531.539256] SLOW spr round 3 (radius: 5) [07:32:33 -129530.703235] SLOW spr round 4 (radius: 5) [07:33:55 -129530.702811] SLOW spr round 5 (radius: 10) [07:35:28 -129530.702232] SLOW spr round 6 (radius: 15) [07:37:36 -129530.402924] SLOW spr round 7 (radius: 5) [07:39:25 -129530.402509] SLOW spr round 8 (radius: 10) [07:41:07 -129530.402096] SLOW spr round 9 (radius: 15) [07:43:11 -129530.401684] SLOW spr round 10 (radius: 20) [07:46:22 -129530.401271] SLOW spr round 11 (radius: 25) [07:50:59 -129530.400858] Model parameter optimization (eps = 0.100000) [07:51:03] ML tree search #10, logLikelihood: -129530.357814 [07:51:03 -697185.239260] Initial branch length optimization [07:51:06 -556681.836429] Model parameter optimization (eps = 10.000000) [07:51:32 -555362.611047] AUTODETECT spr round 1 (radius: 5) [07:53:11 -357773.003410] AUTODETECT spr round 2 (radius: 10) [07:55:21 -274407.043500] AUTODETECT spr round 3 (radius: 15) [07:57:16 -224037.022599] AUTODETECT spr round 4 (radius: 20) [07:59:12 -184732.255540] AUTODETECT spr round 5 (radius: 25) [08:01:18 -175249.783086] SPR radius for FAST iterations: 25 (autodetect) [08:01:18 -175249.783086] Model parameter optimization (eps = 3.000000) [08:01:39 -175143.649880] FAST spr round 1 (radius: 25) [08:03:24 -140457.547683] FAST spr round 2 (radius: 25) [08:04:54 -131807.052014] FAST spr round 3 (radius: 25) [08:06:12 -129663.246474] FAST spr round 4 (radius: 25) [08:07:24 -129576.195742] FAST spr round 5 (radius: 25) [08:08:31 -129571.332921] FAST spr round 6 (radius: 25) [08:09:35 -129571.332296] Model parameter optimization (eps = 1.000000) [08:09:46 -129568.268297] SLOW spr round 1 (radius: 5) [08:11:04 -129543.568279] SLOW spr round 2 (radius: 5) [08:12:20 -129541.031585] SLOW spr round 3 (radius: 5) [08:13:35 -129541.031168] SLOW spr round 4 (radius: 10) [08:14:57 -129540.277541] SLOW spr round 5 (radius: 5) [08:16:27 -129540.277130] SLOW spr round 6 (radius: 10) [08:17:56 -129540.276716] SLOW spr round 7 (radius: 15) [08:19:53 -129540.276303] SLOW spr round 8 (radius: 20) [08:22:48 -129539.983366] SLOW spr round 9 (radius: 5) [08:24:27 -129539.982957] SLOW spr round 10 (radius: 10) [08:26:05 -129539.982543] SLOW spr round 11 (radius: 15) [08:28:03 -129539.982388] SLOW spr round 12 (radius: 20) [08:31:07 -129539.982386] SLOW spr round 13 (radius: 25) [08:35:42 -129539.982385] Model parameter optimization (eps = 0.100000) [08:35:46] ML tree search #11, logLikelihood: -129539.940392 [08:35:46 -703288.032579] Initial branch length optimization [08:35:50 -561677.111875] Model parameter optimization (eps = 10.000000) [08:36:13 -560255.450984] AUTODETECT spr round 1 (radius: 5) [08:37:44 -364257.486543] AUTODETECT spr round 2 (radius: 10) [08:39:40 -265644.614672] AUTODETECT spr round 3 (radius: 15) [08:41:26 -227907.223984] AUTODETECT spr round 4 (radius: 20) [08:43:25 -195089.820948] AUTODETECT spr round 5 (radius: 25) [08:45:39 -190941.857329] SPR radius for FAST iterations: 25 (autodetect) [08:45:39 -190941.857329] Model parameter optimization (eps = 3.000000) [08:45:55 -190820.240772] FAST spr round 1 (radius: 25) [08:47:38 -138169.555445] FAST spr round 2 (radius: 25) [08:49:01 -130090.467875] FAST spr round 3 (radius: 25) [08:50:16 -129583.664881] FAST spr round 4 (radius: 25) [08:51:27 -129566.242752] FAST spr round 5 (radius: 25) [08:52:35 -129560.615009] FAST spr round 6 (radius: 25) [08:53:42 -129560.614999] Model parameter optimization (eps = 1.000000) [08:53:52 -129558.852732] SLOW spr round 1 (radius: 5) [08:55:12 -129541.955558] SLOW spr round 2 (radius: 5) [08:56:28 -129531.784487] SLOW spr round 3 (radius: 5) [08:57:44 -129530.854836] SLOW spr round 4 (radius: 5) [08:59:00 -129530.854792] SLOW spr round 5 (radius: 10) [09:00:25 -129530.853641] SLOW spr round 6 (radius: 15) [09:02:23 -129530.554651] SLOW spr round 7 (radius: 5) [09:04:04 -129530.554647] SLOW spr round 8 (radius: 10) [09:05:39 -129530.554644] SLOW spr round 9 (radius: 15) [09:07:36 -129530.554643] SLOW spr round 10 (radius: 20) [09:10:40 -129530.554642] SLOW spr round 11 (radius: 25) [09:15:09 -129530.264276] SLOW spr round 12 (radius: 5) [09:16:52 -129530.264275] SLOW spr round 13 (radius: 10) [09:18:30 -129530.264274] SLOW spr round 14 (radius: 15) [09:20:28 -129530.264273] SLOW spr round 15 (radius: 20) [09:23:32 -129530.264272] SLOW spr round 16 (radius: 25) [09:28:04 -129530.264271] Model parameter optimization (eps = 0.100000) [09:28:11] ML tree search #12, logLikelihood: -129530.172323 [09:28:11 -701485.769792] Initial branch length optimization [09:28:14 -558838.542197] Model parameter optimization (eps = 10.000000) [09:28:40 -557342.990258] AUTODETECT spr round 1 (radius: 5) [09:30:10 -364653.450794] AUTODETECT spr round 2 (radius: 10) [09:32:02 -251780.046404] AUTODETECT spr round 3 (radius: 15) [09:33:41 -197495.744083] AUTODETECT spr round 4 (radius: 20) [09:35:32 -172033.720728] AUTODETECT spr round 5 (radius: 25) [09:37:47 -159064.600948] SPR radius for FAST iterations: 25 (autodetect) [09:37:47 -159064.600948] Model parameter optimization (eps = 3.000000) [09:38:05 -158965.338640] FAST spr round 1 (radius: 25) [09:39:41 -131622.334967] FAST spr round 2 (radius: 25) [09:41:00 -129697.919014] FAST spr round 3 (radius: 25) [09:42:15 -129628.936323] FAST spr round 4 (radius: 25) [09:43:26 -129615.223873] FAST spr round 5 (radius: 25) [09:44:33 -129615.223839] Model parameter optimization (eps = 1.000000) [09:44:40 -129614.444550] SLOW spr round 1 (radius: 5) [09:46:01 -129578.232402] SLOW spr round 2 (radius: 5) [09:47:20 -129567.729408] SLOW spr round 3 (radius: 5) [09:48:43 -129564.968397] SLOW spr round 4 (radius: 5) [09:50:04 -129564.664727] SLOW spr round 5 (radius: 5) [09:51:23 -129564.662402] SLOW spr round 6 (radius: 10) [09:52:51 -129556.691716] SLOW spr round 7 (radius: 5) [09:54:29 -129547.622942] SLOW spr round 8 (radius: 5) [09:55:57 -129542.954195] SLOW spr round 9 (radius: 5) [09:57:20 -129542.948215] SLOW spr round 10 (radius: 10) [09:58:48 -129540.563179] SLOW spr round 11 (radius: 5) [10:00:23 -129537.029137] SLOW spr round 12 (radius: 5) [10:01:47 -129535.495239] SLOW spr round 13 (radius: 5) [10:03:07 -129535.495233] SLOW spr round 14 (radius: 10) [10:04:34 -129535.495232] SLOW spr round 15 (radius: 15) [10:06:31 -129535.199729] SLOW spr round 16 (radius: 5) [10:08:11 -129535.199728] SLOW spr round 17 (radius: 10) [10:09:46 -129535.199727] SLOW spr round 18 (radius: 15) [10:11:40 -129535.199726] SLOW spr round 19 (radius: 20) [10:14:31 -129535.199726] SLOW spr round 20 (radius: 25) [10:18:59 -129535.199725] Model parameter optimization (eps = 0.100000) [10:19:03] ML tree search #13, logLikelihood: -129535.131844 [10:19:03 -696843.236399] Initial branch length optimization [10:19:05 -560030.300864] Model parameter optimization (eps = 10.000000) [10:19:30 -558608.741438] AUTODETECT spr round 1 (radius: 5) [10:21:01 -365557.954337] AUTODETECT spr round 2 (radius: 10) [10:23:03 -260477.689052] AUTODETECT spr round 3 (radius: 15) [10:24:44 -191013.140252] AUTODETECT spr round 4 (radius: 20) [10:26:40 -165369.169335] AUTODETECT spr round 5 (radius: 25) [10:28:58 -156721.213408] SPR radius for FAST iterations: 25 (autodetect) [10:28:58 -156721.213408] Model parameter optimization (eps = 3.000000) [10:29:15 -156605.463789] FAST spr round 1 (radius: 25) [10:30:59 -130917.854073] FAST spr round 2 (radius: 25) [10:32:25 -129762.371696] FAST spr round 3 (radius: 25) [10:33:45 -129580.498334] FAST spr round 4 (radius: 25) [10:34:55 -129575.311123] FAST spr round 5 (radius: 25) [10:36:02 -129575.308310] Model parameter optimization (eps = 1.000000) [10:36:13 -129566.358931] SLOW spr round 1 (radius: 5) [10:37:32 -129545.839481] SLOW spr round 2 (radius: 5) [10:38:52 -129536.881987] SLOW spr round 3 (radius: 5) [10:40:09 -129536.734500] SLOW spr round 4 (radius: 5) [10:41:25 -129536.734337] SLOW spr round 5 (radius: 10) [10:42:51 -129530.185599] SLOW spr round 6 (radius: 5) [10:44:27 -129528.176961] SLOW spr round 7 (radius: 5) [10:45:52 -129528.176818] SLOW spr round 8 (radius: 10) [10:47:18 -129528.176813] SLOW spr round 9 (radius: 15) [10:49:14 -129528.003429] SLOW spr round 10 (radius: 5) [10:50:55 -129528.003263] SLOW spr round 11 (radius: 10) [10:52:30 -129527.717218] SLOW spr round 12 (radius: 5) [10:54:03 -129527.717216] SLOW spr round 13 (radius: 10) [10:55:32 -129527.717214] SLOW spr round 14 (radius: 15) [10:57:28 -129527.717212] SLOW spr round 15 (radius: 20) [11:00:24 -129527.717211] SLOW spr round 16 (radius: 25) [11:04:33 -129527.418310] SLOW spr round 17 (radius: 5) [11:06:18 -129527.418309] SLOW spr round 18 (radius: 10) [11:07:51 -129527.418308] SLOW spr round 19 (radius: 15) [11:09:41 -129527.418306] SLOW spr round 20 (radius: 20) [11:12:26 -129527.418305] SLOW spr round 21 (radius: 25) [11:16:25 -129527.418304] Model parameter optimization (eps = 0.100000) [11:16:31] ML tree search #14, logLikelihood: -129527.300986 [11:16:31 -693529.900237] Initial branch length optimization [11:16:34 -555323.226598] Model parameter optimization (eps = 10.000000) [11:16:57 -553897.660516] AUTODETECT spr round 1 (radius: 5) [11:18:31 -360936.246219] AUTODETECT spr round 2 (radius: 10) [11:20:19 -255158.535708] AUTODETECT spr round 3 (radius: 15) [11:21:59 -209764.722992] AUTODETECT spr round 4 (radius: 20) [11:23:52 -183105.634779] AUTODETECT spr round 5 (radius: 25) [11:26:18 -161111.972748] SPR radius for FAST iterations: 25 (autodetect) [11:26:18 -161111.972748] Model parameter optimization (eps = 3.000000) [11:26:39 -161042.467084] FAST spr round 1 (radius: 25) [11:28:28 -131029.060399] FAST spr round 2 (radius: 25) [11:29:55 -129698.205412] FAST spr round 3 (radius: 25) [11:31:13 -129586.467812] FAST spr round 4 (radius: 25) [11:32:28 -129562.815886] FAST spr round 5 (radius: 25) [11:33:36 -129562.815584] Model parameter optimization (eps = 1.000000) [11:33:47 -129556.448025] SLOW spr round 1 (radius: 5) [11:35:07 -129544.227479] SLOW spr round 2 (radius: 5) [11:36:30 -129544.210128] SLOW spr round 3 (radius: 10) [11:38:01 -129539.088025] SLOW spr round 4 (radius: 5) [11:39:37 -129537.877276] SLOW spr round 5 (radius: 5) [11:41:05 -129537.419258] SLOW spr round 6 (radius: 5) [11:42:27 -129537.419235] SLOW spr round 7 (radius: 10) [11:43:55 -129535.014691] SLOW spr round 8 (radius: 5) [11:45:29 -129532.928068] SLOW spr round 9 (radius: 5) [11:46:54 -129532.928054] SLOW spr round 10 (radius: 10) [11:48:21 -129532.928042] SLOW spr round 11 (radius: 15) [11:50:12 -129532.928039] SLOW spr round 12 (radius: 20) [11:53:00 -129532.928038] SLOW spr round 13 (radius: 25) [11:57:09 -129532.928038] Model parameter optimization (eps = 0.100000) [11:57:13] ML tree search #15, logLikelihood: -129532.876245 [11:57:13 -696052.818041] Initial branch length optimization [11:57:16 -555830.916726] Model parameter optimization (eps = 10.000000) [11:57:37 -554406.823361] AUTODETECT spr round 1 (radius: 5) [11:59:08 -361867.475863] AUTODETECT spr round 2 (radius: 10) [12:01:02 -258206.069735] AUTODETECT spr round 3 (radius: 15) [12:02:47 -202142.329832] AUTODETECT spr round 4 (radius: 20) [12:04:42 -171249.100201] AUTODETECT spr round 5 (radius: 25) [12:06:44 -159280.572898] SPR radius for FAST iterations: 25 (autodetect) [12:06:44 -159280.572898] Model parameter optimization (eps = 3.000000) [12:07:02 -159169.351508] FAST spr round 1 (radius: 25) [12:08:46 -132070.087914] FAST spr round 2 (radius: 25) [12:10:15 -129745.451649] FAST spr round 3 (radius: 25) [12:11:31 -129565.753931] FAST spr round 4 (radius: 25) [12:12:40 -129553.929631] FAST spr round 5 (radius: 25) [12:13:47 -129553.929568] Model parameter optimization (eps = 1.000000) [12:13:54 -129552.143624] SLOW spr round 1 (radius: 5) [12:15:15 -129528.030574] SLOW spr round 2 (radius: 5) [12:16:32 -129526.486578] SLOW spr round 3 (radius: 5) [12:17:49 -129526.312974] SLOW spr round 4 (radius: 5) [12:19:06 -129526.312965] SLOW spr round 5 (radius: 10) [12:20:34 -129525.858552] SLOW spr round 6 (radius: 5) [12:22:08 -129525.858550] SLOW spr round 7 (radius: 10) [12:23:40 -129525.858547] SLOW spr round 8 (radius: 15) [12:25:40 -129525.858545] SLOW spr round 9 (radius: 20) [12:28:44 -129525.858543] SLOW spr round 10 (radius: 25) [12:33:25 -129525.858542] Model parameter optimization (eps = 0.100000) [12:33:29] ML tree search #16, logLikelihood: -129525.812820 [12:33:29 -702046.002118] Initial branch length optimization [12:33:32 -561335.675773] Model parameter optimization (eps = 10.000000) [12:33:54 -559815.171684] AUTODETECT spr round 1 (radius: 5) [12:35:26 -376364.968144] AUTODETECT spr round 2 (radius: 10) [12:37:17 -281779.790009] AUTODETECT spr round 3 (radius: 15) [12:39:08 -222168.024471] AUTODETECT spr round 4 (radius: 20) [12:40:58 -186282.885878] AUTODETECT spr round 5 (radius: 25) [12:43:09 -164458.230189] SPR radius for FAST iterations: 25 (autodetect) [12:43:09 -164458.230189] Model parameter optimization (eps = 3.000000) [12:43:27 -164343.412772] FAST spr round 1 (radius: 25) [12:45:01 -132271.512643] FAST spr round 2 (radius: 25) [12:46:20 -130082.991906] FAST spr round 3 (radius: 25) [12:47:35 -129636.996081] FAST spr round 4 (radius: 25) [12:48:47 -129579.541356] FAST spr round 5 (radius: 25) [12:50:00 -129563.833250] FAST spr round 6 (radius: 25) [12:51:08 -129561.440604] FAST spr round 7 (radius: 25) [12:52:15 -129561.440135] Model parameter optimization (eps = 1.000000) [12:52:25 -129559.246197] SLOW spr round 1 (radius: 5) [12:53:43 -129545.394608] SLOW spr round 2 (radius: 5) [12:55:01 -129544.445893] SLOW spr round 3 (radius: 5) [12:56:21 -129544.443890] SLOW spr round 4 (radius: 10) [12:57:49 -129544.442443] SLOW spr round 5 (radius: 15) [12:59:49 -129543.687968] SLOW spr round 6 (radius: 5) [13:01:39 -129543.687366] SLOW spr round 7 (radius: 10) [13:03:15 -129543.686919] SLOW spr round 8 (radius: 15) [13:05:10 -129543.686497] SLOW spr round 9 (radius: 20) [13:08:12 -129543.686075] SLOW spr round 10 (radius: 25) [13:12:30 -129543.685653] Model parameter optimization (eps = 0.100000) [13:12:34] ML tree search #17, logLikelihood: -129543.630993 [13:12:34 -698949.285997] Initial branch length optimization [13:12:37 -557161.558662] Model parameter optimization (eps = 10.000000) [13:12:56 -555744.710920] AUTODETECT spr round 1 (radius: 5) [13:14:26 -367913.058315] AUTODETECT spr round 2 (radius: 10) [13:16:18 -268873.226797] AUTODETECT spr round 3 (radius: 15) [13:18:01 -231425.982909] AUTODETECT spr round 4 (radius: 20) [13:19:58 -204681.295541] AUTODETECT spr round 5 (radius: 25) [13:22:05 -193524.250092] SPR radius for FAST iterations: 25 (autodetect) [13:22:05 -193524.250092] Model parameter optimization (eps = 3.000000) [13:22:26 -193370.903716] FAST spr round 1 (radius: 25) [13:24:09 -143996.854035] FAST spr round 2 (radius: 25) [13:25:29 -136055.072944] FAST spr round 3 (radius: 25) [13:26:44 -131890.916037] FAST spr round 4 (radius: 25) [13:27:54 -129684.302627] FAST spr round 5 (radius: 25) [13:29:07 -129596.702993] FAST spr round 6 (radius: 25) [13:30:15 -129565.609726] FAST spr round 7 (radius: 25) [13:31:21 -129565.609708] Model parameter optimization (eps = 1.000000) [13:31:32 -129564.033388] SLOW spr round 1 (radius: 5) [13:32:50 -129549.699058] SLOW spr round 2 (radius: 5) [13:34:08 -129548.750358] SLOW spr round 3 (radius: 5) [13:35:27 -129547.940638] SLOW spr round 4 (radius: 5) [13:36:47 -129547.940498] SLOW spr round 5 (radius: 10) [13:38:15 -129547.928395] SLOW spr round 6 (radius: 15) [13:40:14 -129547.928393] SLOW spr round 7 (radius: 20) [13:43:12 -129547.928392] SLOW spr round 8 (radius: 25) [13:47:28 -129547.928391] Model parameter optimization (eps = 0.100000) [13:47:37] ML tree search #18, logLikelihood: -129547.374447 [13:47:37 -698713.902617] Initial branch length optimization [13:47:39 -559989.375310] Model parameter optimization (eps = 10.000000) [13:48:11 -558567.049494] AUTODETECT spr round 1 (radius: 5) [13:49:42 -361545.375505] AUTODETECT spr round 2 (radius: 10) [13:51:33 -257420.454731] AUTODETECT spr round 3 (radius: 15) [13:53:14 -186250.147418] AUTODETECT spr round 4 (radius: 20) [13:55:03 -163898.174173] AUTODETECT spr round 5 (radius: 25) [13:57:12 -156789.906134] SPR radius for FAST iterations: 25 (autodetect) [13:57:12 -156789.906134] Model parameter optimization (eps = 3.000000) [13:57:28 -156729.083004] FAST spr round 1 (radius: 25) [13:59:04 -130556.400924] FAST spr round 2 (radius: 25) [14:00:24 -129683.551323] FAST spr round 3 (radius: 25) [14:01:39 -129626.825002] FAST spr round 4 (radius: 25) [14:02:49 -129617.477072] FAST spr round 5 (radius: 25) [14:03:58 -129599.811682] FAST spr round 6 (radius: 25) [14:05:08 -129590.213553] FAST spr round 7 (radius: 25) [14:06:14 -129590.213124] Model parameter optimization (eps = 1.000000) [14:06:26 -129584.158471] SLOW spr round 1 (radius: 5) [14:07:45 -129559.375461] SLOW spr round 2 (radius: 5) [14:09:03 -129548.437909] SLOW spr round 3 (radius: 5) [14:10:23 -129548.208816] SLOW spr round 4 (radius: 5) [14:11:42 -129548.208216] SLOW spr round 5 (radius: 10) [14:13:10 -129539.509838] SLOW spr round 6 (radius: 5) [14:14:47 -129534.796322] SLOW spr round 7 (radius: 5) [14:16:14 -129534.795631] SLOW spr round 8 (radius: 10) [14:17:41 -129534.795158] SLOW spr round 9 (radius: 15) [14:19:43 -129534.505877] SLOW spr round 10 (radius: 5) [14:21:20 -129534.505441] SLOW spr round 11 (radius: 10) [14:22:52 -129534.504990] SLOW spr round 12 (radius: 15) [14:24:48 -129534.504825] SLOW spr round 13 (radius: 20) [14:27:43 -129534.504823] SLOW spr round 14 (radius: 25) [14:31:32 -129534.504821] Model parameter optimization (eps = 0.100000) [14:31:39] ML tree search #19, logLikelihood: -129534.228821 [14:31:39 -702571.457406] Initial branch length optimization [14:31:42 -561495.062738] Model parameter optimization (eps = 10.000000) [14:32:05 -560026.369701] AUTODETECT spr round 1 (radius: 5) [14:33:31 -360669.564102] AUTODETECT spr round 2 (radius: 10) [14:35:22 -259125.585375] AUTODETECT spr round 3 (radius: 15) [14:37:04 -212077.182439] AUTODETECT spr round 4 (radius: 20) [14:38:52 -171500.280508] AUTODETECT spr round 5 (radius: 25) [14:41:10 -159261.747579] SPR radius for FAST iterations: 25 (autodetect) [14:41:10 -159261.747579] Model parameter optimization (eps = 3.000000) [14:41:27 -159157.817433] FAST spr round 1 (radius: 25) [14:43:00 -130685.311851] FAST spr round 2 (radius: 25) [14:44:15 -129757.392258] FAST spr round 3 (radius: 25) [14:45:26 -129583.194015] FAST spr round 4 (radius: 25) [14:46:34 -129556.940065] FAST spr round 5 (radius: 25) [14:47:38 -129552.696033] FAST spr round 6 (radius: 25) [14:48:40 -129552.696030] Model parameter optimization (eps = 1.000000) [14:48:49 -129549.711180] SLOW spr round 1 (radius: 5) [14:50:04 -129528.669930] SLOW spr round 2 (radius: 5) [14:51:17 -129527.284335] SLOW spr round 3 (radius: 5) [14:52:31 -129524.076690] SLOW spr round 4 (radius: 5) [14:53:45 -129524.059222] SLOW spr round 5 (radius: 10) [14:55:10 -129520.974641] SLOW spr round 6 (radius: 5) [14:56:44 -129520.822032] SLOW spr round 7 (radius: 5) [14:58:10 -129520.822023] SLOW spr round 8 (radius: 10) [14:59:36 -129520.822023] SLOW spr round 9 (radius: 15) [15:01:35 -129520.822022] SLOW spr round 10 (radius: 20) [15:04:28 -129520.822022] SLOW spr round 11 (radius: 25) [15:08:58 -129520.822022] Model parameter optimization (eps = 0.100000) [15:09:03] ML tree search #20, logLikelihood: -129520.763640 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.287961,0.311634) (0.291617,0.510882) (0.270262,1.144225) (0.150160,3.010378) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -129519.331125 AIC score: 263040.662250 / AICc score: 8275044.662250 / BIC score: 271672.071891 Free parameters (model + branch lengths): 2001 WARNING: Number of free parameters (K=2001) is larger than alignment size (n=552). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TD26/3_mltree/Q8TD26.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TD26/3_mltree/Q8TD26.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TD26/3_mltree/Q8TD26.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8TD26/3_mltree/Q8TD26.raxml.log Analysis started: 30-Jun-2021 17:46:52 / finished: 01-Jul-2021 08:55:56 Elapsed time: 54543.694 seconds Consumed energy: 4102.338 Wh (= 21 km in an electric car, or 103 km with an e-scooter!)