RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 11-Jul-2021 20:34:44 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8TD19/2_msa/Q8TD19_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8TD19/3_mltree/Q8TD19 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8TD19/2_msa/Q8TD19_trimmed_msa.fasta
[00:00:00] Loaded alignment with 994 taxa and 254 sites

WARNING: Sequences tr_F1NAG9_F1NAG9_CHICK_9031 and tr_A0A226NH76_A0A226NH76_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F1NAG9_F1NAG9_CHICK_9031 and tr_A0A226NZ07_A0A226NZ07_COLVI_9014 are exactly identical!
WARNING: Sequences tr_Q5F3P1_Q5F3P1_CHICK_9031 and tr_H0Z1R3_H0Z1R3_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_Q5F3P1_Q5F3P1_CHICK_9031 and tr_U3JJB6_U3JJB6_FICAL_59894 are exactly identical!
WARNING: Sequences tr_Q5F3P1_Q5F3P1_CHICK_9031 and tr_U3ILU9_U3ILU9_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_Q5F3P1_Q5F3P1_CHICK_9031 and tr_A0A0Q3Q1T8_A0A0Q3Q1T8_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_Q5F3P1_Q5F3P1_CHICK_9031 and tr_A0A093QAD4_A0A093QAD4_9PASS_328815 are exactly identical!
WARNING: Sequences tr_Q5F3P1_Q5F3P1_CHICK_9031 and tr_A0A091VZU7_A0A091VZU7_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_Q5F3P1_Q5F3P1_CHICK_9031 and tr_A0A087R9J0_A0A087R9J0_APTFO_9233 are exactly identical!
WARNING: Sequences tr_Q5F3P1_Q5F3P1_CHICK_9031 and tr_A0A091FPI6_A0A091FPI6_9AVES_55661 are exactly identical!
WARNING: Sequences tr_Q5F3P1_Q5F3P1_CHICK_9031 and tr_A0A2I0ME18_A0A2I0ME18_COLLI_8932 are exactly identical!
WARNING: Sequences tr_M3YCR1_M3YCR1_MUSPF_9669 and tr_G1SYU0_G1SYU0_RABIT_9986 are exactly identical!
WARNING: Sequences tr_M3YCR1_M3YCR1_MUSPF_9669 and tr_G1MJ37_G1MJ37_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3YCR1_M3YCR1_MUSPF_9669 and tr_A0A2U3VVF4_A0A2U3VVF4_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3YCR1_M3YCR1_MUSPF_9669 and tr_A0A2Y9JJR6_A0A2Y9JJR6_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YCR1_M3YCR1_MUSPF_9669 and tr_A0A2Y9NBI6_A0A2Y9NBI6_DELLE_9749 are exactly identical!
WARNING: Sequences tr_M3YCR1_M3YCR1_MUSPF_9669 and tr_A0A2Y9F861_A0A2Y9F861_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_M3YRU0_M3YRU0_MUSPF_9669 and tr_G1LDE4_G1LDE4_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3YRU0_M3YRU0_MUSPF_9669 and tr_M3X8S2_M3X8S2_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3YRU0_M3YRU0_MUSPF_9669 and tr_A0A1S3A7U2_A0A1S3A7U2_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_M3YRU0_M3YRU0_MUSPF_9669 and tr_A0A1S3F541_A0A1S3F541_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_M3YRU0_M3YRU0_MUSPF_9669 and tr_A0A2Y9E1J9_A0A2Y9E1J9_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_M3YRU0_M3YRU0_MUSPF_9669 and tr_A0A2Y9JXW2_A0A2Y9JXW2_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YRU0_M3YRU0_MUSPF_9669 and tr_A0A384CH41_A0A384CH41_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3YZB5_M3YZB5_MUSPF_9669 and tr_A0A2U3WQM4_A0A2U3WQM4_ODORO_9708 are exactly identical!
WARNING: Sequences tr_B6HQ51_B6HQ51_PENRW_500485 and tr_A0A1V6YA14_A0A1V6YA14_PENNA_60175 are exactly identical!
WARNING: Sequences tr_G1QRK6_G1QRK6_NOMLE_61853 and tr_F6YW35_F6YW35_HORSE_9796 are exactly identical!
WARNING: Sequences tr_G1QRK6_G1QRK6_NOMLE_61853 and sp_D3ZGQ5_NEK8_RAT_10116 are exactly identical!
WARNING: Sequences tr_G1QRK6_G1QRK6_NOMLE_61853 and tr_H0X674_H0X674_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G1QRK6_G1QRK6_NOMLE_61853 and tr_H0UW90_H0UW90_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_G1QRK6_G1QRK6_NOMLE_61853 and sp_Q86SG6_NEK8_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1QRK6_G1QRK6_NOMLE_61853 and tr_G5BVI5_G5BVI5_HETGA_10181 are exactly identical!
WARNING: Sequences tr_G1QRK6_G1QRK6_NOMLE_61853 and tr_G3TB80_G3TB80_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_G1QRK6_G1QRK6_NOMLE_61853 and tr_I3L8I2_I3L8I2_PIG_9823 are exactly identical!
WARNING: Sequences tr_G1QRK6_G1QRK6_NOMLE_61853 and tr_A0A091D5M3_A0A091D5M3_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G1QRK6_G1QRK6_NOMLE_61853 and tr_A0A2R8ZBY5_A0A2R8ZBY5_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1QRK6_G1QRK6_NOMLE_61853 and tr_A0A2U4ANQ0_A0A2U4ANQ0_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G1QRK6_G1QRK6_NOMLE_61853 and tr_A0A384A9J9_A0A384A9J9_BALAS_310752 are exactly identical!
WARNING: Sequences tr_G1R4E6_G1R4E6_NOMLE_61853 and tr_A0A2I2Z1D6_A0A2I2Z1D6_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1R4E6_G1R4E6_NOMLE_61853 and tr_H2QQE9_H2QQE9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1R4E6_G1R4E6_NOMLE_61853 and sp_Q96PY6_NEK1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1R4E6_G1R4E6_NOMLE_61853 and tr_F7GZ09_F7GZ09_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1R4E6_G1R4E6_NOMLE_61853 and tr_G8F293_G8F293_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1R4E6_G1R4E6_NOMLE_61853 and tr_A0A0D9S233_A0A0D9S233_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1R4E6_G1R4E6_NOMLE_61853 and tr_A0A2K6DRZ8_A0A2K6DRZ8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_B4HHL0_B4HHL0_DROSE_7238 and tr_B4HHL1_B4HHL1_DROSE_7238 are exactly identical!
WARNING: Sequences tr_G3RB47_G3RB47_GORGO_9595 and tr_A0A2J8L8I7_A0A2J8L8I7_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RB47_G3RB47_GORGO_9595 and sp_P51956_NEK3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RB47_G3RB47_GORGO_9595 and tr_A0A2R9BI97_A0A2R9BI97_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3S0W8_G3S0W8_GORGO_9595 and tr_H2NLU1_H2NLU1_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3S0W8_G3S0W8_GORGO_9595 and tr_K7CFQ0_K7CFQ0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3S0W8_G3S0W8_GORGO_9595 and sp_Q8TD19_NEK9_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3S0W8_G3S0W8_GORGO_9595 and tr_F6U7G5_F6U7G5_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G3S0W8_G3S0W8_GORGO_9595 and tr_F7I9E1_F7I9E1_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G3S0W8_G3S0W8_GORGO_9595 and tr_G7PAV8_G7PAV8_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G3S0W8_G3S0W8_GORGO_9595 and tr_L5JQM7_L5JQM7_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G3S0W8_G3S0W8_GORGO_9595 and tr_A0A096NS50_A0A096NS50_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3S0W8_G3S0W8_GORGO_9595 and tr_A0A0D9RIA5_A0A0D9RIA5_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G3S0W8_G3S0W8_GORGO_9595 and tr_A0A2K5MV10_A0A2K5MV10_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G3S0W8_G3S0W8_GORGO_9595 and tr_A0A2K6D0N3_A0A2K6D0N3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G3S0W8_G3S0W8_GORGO_9595 and tr_A0A2R8ZH82_A0A2R8ZH82_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2N3S6_H2N3S6_PONAB_9601 and tr_H2Q134_H2Q134_PANTR_9598 are exactly identical!
WARNING: Sequences tr_H2N3S6_H2N3S6_PONAB_9601 and sp_P51955_NEK2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2N3S6_H2N3S6_PONAB_9601 and tr_A0A2R9AXA8_A0A2R9AXA8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_Q5R5M9_Q5R5M9_PONAB_9601 and sp_P51957_NEK4_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_Q5R5M9_Q5R5M9_PONAB_9601 and tr_F7F0Z5_F7F0Z5_MACMU_9544 are exactly identical!
WARNING: Sequences tr_Q5R5M9_Q5R5M9_PONAB_9601 and tr_A0A2K6AUF2_A0A2K6AUF2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_Q5R5M9_Q5R5M9_PONAB_9601 and tr_A0A2R9A7M0_A0A2R9A7M0_PANPA_9597 are exactly identical!
WARNING: Sequences tr_E2R0E9_E2R0E9_CANLF_9615 and tr_G1M3Y7_G1M3Y7_AILME_9646 are exactly identical!
WARNING: Sequences tr_A0A2J8L8J1_A0A2J8L8J1_PANTR_9598 and tr_A0A2R9C9D1_A0A2R9C9D1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_W5P0W7_W5P0W7_SHEEP_9940 and tr_E1B827_E1B827_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5Q1R4_W5Q1R4_SHEEP_9940 and tr_E1BBM3_E1BBM3_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_H0WY24_H0WY24_OTOGA_30611 and tr_G3TAS8_G3TAS8_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_H0WY24_H0WY24_OTOGA_30611 and tr_F1MM88_F1MM88_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_Q2U6P5_Q2U6P5_ASPOR_510516 and tr_A0A0F0IKM1_A0A0F0IKM1_ASPPU_1403190 are exactly identical!
WARNING: Sequences tr_Q2U6P5_Q2U6P5_ASPOR_510516 and tr_A0A1S9D914_A0A1S9D914_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_D0MQ77_D0MQ77_PHYIT_403677 and tr_A0A329SP70_A0A329SP70_9STRA_29920 are exactly identical!
WARNING: Sequences tr_D0MYX0_D0MYX0_PHYIT_403677 and tr_A0A329SG48_A0A329SG48_9STRA_29920 are exactly identical!
WARNING: Sequences tr_F6UM89_F6UM89_MACMU_9544 and tr_G7PTY4_G7PTY4_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6UM89_F6UM89_MACMU_9544 and tr_A0A096P3C4_A0A096P3C4_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6UM89_F6UM89_MACMU_9544 and tr_A0A2K5NPU5_A0A2K5NPU5_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6UM89_F6UM89_MACMU_9544 and tr_A0A2K6DDI2_A0A2K6DDI2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6UM89_F6UM89_MACMU_9544 and tr_A0A2K5XGK4_A0A2K5XGK4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6WD53_F6WD53_MACMU_9544 and tr_G7PVG5_G7PVG5_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7C8J4_F7C8J4_MACMU_9544 and tr_G8F2A1_G8F2A1_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7C8J4_F7C8J4_MACMU_9544 and tr_A0A096NPN1_A0A096NPN1_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7C8J4_F7C8J4_MACMU_9544 and tr_A0A0D9RS67_A0A0D9RS67_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F7C8J4_F7C8J4_MACMU_9544 and tr_A0A2K5KM94_A0A2K5KM94_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7C8J4_F7C8J4_MACMU_9544 and tr_A0A2K6AAM9_A0A2K6AAM9_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G7XL82_G7XL82_ASPKW_1033177 and tr_A0A100IQU2_A0A100IQU2_ASPNG_5061 are exactly identical!
WARNING: Sequences tr_G7XL82_G7XL82_ASPKW_1033177 and tr_A0A1L9MT86_A0A1L9MT86_ASPTU_767770 are exactly identical!
WARNING: Sequences tr_G7XL82_G7XL82_ASPKW_1033177 and tr_A0A1L9UE96_A0A1L9UE96_9EURO_767769 are exactly identical!
WARNING: Sequences tr_G7XL82_G7XL82_ASPKW_1033177 and tr_A0A317VNF1_A0A317VNF1_9EURO_1448314 are exactly identical!
WARNING: Sequences tr_G7XL82_G7XL82_ASPKW_1033177 and tr_A0A318ZZ09_A0A318ZZ09_9EURO_1450533 are exactly identical!
WARNING: Sequences tr_G7XL82_G7XL82_ASPKW_1033177 and tr_A0A319EIE2_A0A319EIE2_9EURO_1448318 are exactly identical!
WARNING: Sequences tr_G7XL82_G7XL82_ASPKW_1033177 and tr_A0A395GN29_A0A395GN29_9EURO_1448316 are exactly identical!
WARNING: Sequences tr_F4NXH4_F4NXH4_BATDJ_684364 and tr_A0A177WJN8_A0A177WJN8_BATDE_403673 are exactly identical!
WARNING: Sequences tr_G3PB08_G3PB08_GASAC_69293 and tr_A0A2U9B498_A0A2U9B498_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_H0Z5Q9_H0Z5Q9_TAEGU_59729 and tr_A0A218VC13_A0A218VC13_9PASE_299123 are exactly identical!
WARNING: Sequences tr_B3RWU4_B3RWU4_TRIAD_10228 and tr_A0A369SDL3_A0A369SDL3_9METZ_287889 are exactly identical!
WARNING: Sequences tr_B3RXJ1_B3RXJ1_TRIAD_10228 and tr_A0A369RYC5_A0A369RYC5_9METZ_287889 are exactly identical!
WARNING: Sequences tr_B3S3U6_B3S3U6_TRIAD_10228 and tr_A0A369RXJ0_A0A369RXJ0_9METZ_287889 are exactly identical!
WARNING: Sequences tr_W2Q030_W2Q030_PHYPN_761204 and tr_A0A0W8CXX1_A0A0W8CXX1_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_W2Q030_W2Q030_PHYPN_761204 and tr_W2KXQ5_W2KXQ5_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_W2QCT3_W2QCT3_PHYPN_761204 and tr_A0A0W8DF58_A0A0W8DF58_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_W2QCT3_W2QCT3_PHYPN_761204 and tr_W2LCI1_W2LCI1_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_W2R2J6_W2R2J6_PHYPN_761204 and tr_A0A0W8D357_A0A0W8D357_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_W2R2J6_W2R2J6_PHYPN_761204 and tr_W2G8P3_W2G8P3_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A096N2U3_A0A096N2U3_PAPAN_9555 and tr_A0A2K5NE86_A0A2K5NE86_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A096NYB6_A0A096NYB6_PAPAN_9555 and tr_A0A2K5Y0K5_A0A2K5Y0K5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A0A2KPR1_A0A0A2KPR1_PENIT_40296 and tr_A0A0A2JTM8_A0A0A2JTM8_PENEN_27334 are exactly identical!
WARNING: Sequences tr_A0A0A2KPR1_A0A0A2KPR1_PENIT_40296 and tr_W6PSW2_W6PSW2_PENRF_1365484 are exactly identical!
WARNING: Sequences tr_A0A0A2KPR1_A0A0A2KPR1_PENIT_40296 and tr_A0A0M9WGE9_A0A0M9WGE9_9EURO_229535 are exactly identical!
WARNING: Sequences tr_A0A0A2KPR1_A0A0A2KPR1_PENIT_40296 and tr_A0A0G4NVY7_A0A0G4NVY7_PENCA_1429867 are exactly identical!
WARNING: Sequences tr_A0A0A2KPR1_A0A0A2KPR1_PENIT_40296 and tr_A0A117NP38_A0A117NP38_9EURO_48697 are exactly identical!
WARNING: Sequences tr_A0A0A2KPR1_A0A0A2KPR1_PENIT_40296 and tr_A0A1V6NH04_A0A1V6NH04_9EURO_60169 are exactly identical!
WARNING: Sequences tr_A0A0A2KPR1_A0A0A2KPR1_PENIT_40296 and tr_A0A1V6QZH3_A0A1V6QZH3_9EURO_60172 are exactly identical!
WARNING: Sequences tr_A0A0F8V018_A0A0F8V018_9EURO_308745 and tr_A0A2T5LRH0_A0A2T5LRH0_9EURO_1392256 are exactly identical!
WARNING: Sequences tr_A0A0K0FK71_A0A0K0FK71_STRVS_75913 and tr_A0A0N5BQQ0_A0A0N5BQQ0_STREA_174720 are exactly identical!
WARNING: Sequences tr_A0A0L1INH0_A0A0L1INH0_ASPNO_1509407 and tr_A0A1F7ZLY2_A0A1F7ZLY2_9EURO_109264 are exactly identical!
WARNING: Sequences tr_A0A091ESW9_A0A091ESW9_CORBR_85066 and tr_A0A091JN50_A0A091JN50_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A091ESW9_A0A091ESW9_CORBR_85066 and tr_A0A099Z1J0_A0A099Z1J0_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A091ESW9_A0A091ESW9_CORBR_85066 and tr_A0A0A0APV3_A0A0A0APV3_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091ESW9_A0A091ESW9_CORBR_85066 and tr_A0A091I374_A0A091I374_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A2I0LKT7_A0A2I0LKT7_COLLI_8932 and tr_A0A1V4K2E2_A0A1V4K2E2_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A2I0LQL7_A0A2I0LQL7_COLLI_8932 and tr_A0A1V4IY62_A0A1V4IY62_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A2I0LQL7_A0A2I0LQL7_COLLI_8932 and tr_A0A218VFY4_A0A218VFY4_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1S3H1W2_A0A1S3H1W2_LINUN_7574 and tr_A0A1S3H3S2_A0A1S3H3S2_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3H1W2_A0A1S3H1W2_LINUN_7574 and tr_A0A1S3H4Q4_A0A1S3H4Q4_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3JQB1_A0A1S3JQB1_LINUN_7574 and tr_A0A1S3JQY5_A0A1S3JQY5_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3JQB1_A0A1S3JQB1_LINUN_7574 and tr_A0A1S3JR21_A0A1S3JR21_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3KIE6_A0A1S3KIE6_SALSA_8030 and tr_A0A060X1F3_A0A060X1F3_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3M8E3_A0A1S3M8E3_SALSA_8030 and tr_A0A060W6L7_A0A060W6L7_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3NTH7_A0A1S3NTH7_SALSA_8030 and tr_A0A060W168_A0A060W168_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1I7ULD4_A0A1I7ULD4_9PELO_1561998 and tr_A0A1I7ULD5_A0A1I7ULD5_9PELO_1561998 are exactly identical!
WARNING: Sequences tr_A0A1F5L5V4_A0A1F5L5V4_9EURO_1835702 and tr_A0A1V6Q3M4_A0A1V6Q3M4_9EURO_416450 are exactly identical!
WARNING: Sequences tr_A0A226MWQ9_A0A226MWQ9_CALSU_9009 and tr_A0A226P183_A0A226P183_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A226MZL5_A0A226MZL5_CALSU_9009 and tr_A0A226NZJ7_A0A226NZJ7_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2D0R5B4_A0A2D0R5B4_ICTPU_7998 and tr_A0A2D0R5E3_A0A2D0R5E3_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2U3V2C3_A0A2U3V2C3_TURTR_9739 and tr_A0A2Y9NH35_A0A2Y9NH35_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4B3V9_A0A2U4B3V9_TURTR_9739 and tr_A0A2Y9TEN7_A0A2Y9TEN7_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2U3VW84_A0A2U3VW84_ODORO_9708 and tr_A0A2U3XJJ3_A0A2U3XJJ3_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_A0A2U3X554_A0A2U3X554_ODORO_9708 and tr_A0A2Y9JSU8_A0A2Y9JSU8_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_A0A2Y9SQL1_A0A2Y9SQL1_PHYCD_9755 and tr_A0A383ZIA6_A0A383ZIA6_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 144

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8TD19/3_mltree/Q8TD19.raxml.reduced.phy

Alignment comprises 1 partitions and 254 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 254 / 254
Gaps: 2.16 %
Invariant sites: 0.39 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8TD19/3_mltree/Q8TD19.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 994 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 254 / 20320
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -435393.898748] Initial branch length optimization
[00:00:08 -367142.351535] Model parameter optimization (eps = 10.000000)
[00:01:04 -366574.803730] AUTODETECT spr round 1 (radius: 5)
[00:04:59 -259541.826390] AUTODETECT spr round 2 (radius: 10)
[00:09:27 -184928.577927] AUTODETECT spr round 3 (radius: 15)
[00:14:22 -146039.188655] AUTODETECT spr round 4 (radius: 20)
[00:19:16 -135258.447073] AUTODETECT spr round 5 (radius: 25)
[00:24:57 -135121.207481] SPR radius for FAST iterations: 25 (autodetect)
[00:24:57 -135121.207481] Model parameter optimization (eps = 3.000000)
[00:25:35 -134972.896227] FAST spr round 1 (radius: 25)
[00:30:22 -121214.660682] FAST spr round 2 (radius: 25)
[00:33:32 -120561.703746] FAST spr round 3 (radius: 25)
[00:36:21 -120508.585783] FAST spr round 4 (radius: 25)
[00:38:51 -120497.434476] FAST spr round 5 (radius: 25)
[00:41:15 -120497.432343] Model parameter optimization (eps = 1.000000)
[00:41:40 -120494.742883] SLOW spr round 1 (radius: 5)
[00:44:58 -120468.740843] SLOW spr round 2 (radius: 5)
[00:48:07 -120465.781120] SLOW spr round 3 (radius: 5)
[00:51:08 -120465.780311] SLOW spr round 4 (radius: 10)
[00:54:16 -120464.527381] SLOW spr round 5 (radius: 5)
[00:58:06 -120464.527338] SLOW spr round 6 (radius: 10)
[01:01:34 -120464.527316] SLOW spr round 7 (radius: 15)
[01:06:21 -120464.527299] SLOW spr round 8 (radius: 20)
[01:14:20 -120464.488377] SLOW spr round 9 (radius: 25)
[01:24:16 -120464.488367] Model parameter optimization (eps = 0.100000)

[01:24:26] [worker #0] ML tree search #1, logLikelihood: -120464.446169

[01:24:26 -435497.412684] Initial branch length optimization
[01:24:34 -369667.823285] Model parameter optimization (eps = 10.000000)
[01:25:24 -369008.302254] AUTODETECT spr round 1 (radius: 5)
[01:29:20 -246913.023747] AUTODETECT spr round 2 (radius: 10)
[01:29:25] [worker #3] ML tree search #4, logLikelihood: -120597.756325
[01:33:41 -179475.990135] AUTODETECT spr round 3 (radius: 15)
[01:34:45] [worker #2] ML tree search #3, logLikelihood: -120439.458012
[01:36:00] [worker #1] ML tree search #2, logLikelihood: -120460.021317
[01:38:27 -146941.575483] AUTODETECT spr round 4 (radius: 20)
[01:43:35 -136463.210674] AUTODETECT spr round 5 (radius: 25)
[01:47:29] [worker #4] ML tree search #5, logLikelihood: -120437.263790
[01:49:24 -133838.840732] SPR radius for FAST iterations: 25 (autodetect)
[01:49:24 -133838.840732] Model parameter optimization (eps = 3.000000)
[01:50:04 -133724.035063] FAST spr round 1 (radius: 25)
[01:54:28 -121359.594884] FAST spr round 2 (radius: 25)
[01:57:41 -120529.204746] FAST spr round 3 (radius: 25)
[02:00:32 -120490.031531] FAST spr round 4 (radius: 25)
[02:03:07 -120488.010310] FAST spr round 5 (radius: 25)
[02:05:35 -120485.724498] FAST spr round 6 (radius: 25)
[02:08:02 -120483.328851] FAST spr round 7 (radius: 25)
[02:10:26 -120483.328787] Model parameter optimization (eps = 1.000000)
[02:10:53 -120481.043904] SLOW spr round 1 (radius: 5)
[02:14:08 -120465.653065] SLOW spr round 2 (radius: 5)
[02:17:22 -120458.618466] SLOW spr round 3 (radius: 5)
[02:20:29 -120458.579998] SLOW spr round 4 (radius: 10)
[02:23:39 -120457.823537] SLOW spr round 5 (radius: 5)
[02:27:39 -120457.656150] SLOW spr round 6 (radius: 5)
[02:31:13 -120455.533213] SLOW spr round 7 (radius: 5)
[02:34:29 -120454.841711] SLOW spr round 8 (radius: 5)
[02:37:35 -120454.841500] SLOW spr round 9 (radius: 10)
[02:40:40 -120453.202410] SLOW spr round 10 (radius: 5)
[02:44:31 -120453.202081] SLOW spr round 11 (radius: 10)
[02:47:55 -120453.202075] SLOW spr round 12 (radius: 15)
[02:52:33 -120453.152655] SLOW spr round 13 (radius: 20)
[02:59:47 -120453.152655] SLOW spr round 14 (radius: 25)
[03:01:36] [worker #3] ML tree search #9, logLikelihood: -120438.987897
[03:08:16] [worker #2] ML tree search #8, logLikelihood: -120439.839349
[03:09:00 -120453.152654] Model parameter optimization (eps = 0.100000)

[03:09:17] [worker #0] ML tree search #6, logLikelihood: -120452.242284

[03:09:17 -439145.844753] Initial branch length optimization
[03:09:22 -371794.381562] Model parameter optimization (eps = 10.000000)
[03:10:26 -371087.929929] AUTODETECT spr round 1 (radius: 5)
[03:14:22 -257109.282246] AUTODETECT spr round 2 (radius: 10)
[03:18:45 -187994.482318] AUTODETECT spr round 3 (radius: 15)
[03:19:51] [worker #4] ML tree search #10, logLikelihood: -120631.055713
[03:23:28 -151957.878563] AUTODETECT spr round 4 (radius: 20)
[03:28:28 -136597.984645] AUTODETECT spr round 5 (radius: 25)
[03:34:17 -134729.583727] SPR radius for FAST iterations: 25 (autodetect)
[03:34:17 -134729.583727] Model parameter optimization (eps = 3.000000)
[03:34:47 -134616.744523] FAST spr round 1 (radius: 25)
[03:39:36 -120989.874297] FAST spr round 2 (radius: 25)
[03:43:03 -120585.310858] FAST spr round 3 (radius: 25)
[03:45:59 -120552.034364] FAST spr round 4 (radius: 25)
[03:48:36 -120544.254513] FAST spr round 5 (radius: 25)
[03:51:04 -120544.253426] Model parameter optimization (eps = 1.000000)
[03:51:24 -120541.919521] SLOW spr round 1 (radius: 5)
[03:54:41 -120495.834070] SLOW spr round 2 (radius: 5)
[03:57:53 -120488.564604] SLOW spr round 3 (radius: 5)
[04:00:55 -120488.562472] SLOW spr round 4 (radius: 10)
[04:04:00 -120488.562262] SLOW spr round 5 (radius: 15)
[04:09:07 -120488.562131] SLOW spr round 6 (radius: 20)
[04:16:35] [worker #1] ML tree search #7, logLikelihood: -120451.340568
[04:16:39 -120488.562038] SLOW spr round 7 (radius: 25)
[04:23:43] [worker #3] ML tree search #14, logLikelihood: -120441.045835
[04:25:59 -120449.582875] SLOW spr round 8 (radius: 5)
[04:30:08 -120447.493772] SLOW spr round 9 (radius: 5)
[04:33:42 -120447.493710] SLOW spr round 10 (radius: 10)
[04:36:59 -120447.493675] SLOW spr round 11 (radius: 15)
[04:41:47 -120445.810450] SLOW spr round 12 (radius: 5)
[04:45:49 -120445.323561] SLOW spr round 13 (radius: 5)
[04:49:17 -120445.321489] SLOW spr round 14 (radius: 10)
[04:52:31 -120445.320902] SLOW spr round 15 (radius: 15)
[04:57:23 -120445.320718] SLOW spr round 16 (radius: 20)
[04:59:35] [worker #2] ML tree search #13, logLikelihood: -120464.328805
[05:00:53] [worker #4] ML tree search #15, logLikelihood: -120443.970941
[05:05:01 -120445.320642] SLOW spr round 17 (radius: 25)
[05:14:20 -120445.320593] Model parameter optimization (eps = 0.100000)

[05:14:43] [worker #0] ML tree search #11, logLikelihood: -120443.944944

[05:14:43 -434685.650940] Initial branch length optimization
[05:14:48 -369655.421293] Model parameter optimization (eps = 10.000000)
[05:15:54 -368965.631792] AUTODETECT spr round 1 (radius: 5)
[05:19:42 -249077.878636] AUTODETECT spr round 2 (radius: 10)
[05:24:09 -173534.880830] AUTODETECT spr round 3 (radius: 15)
[05:28:38 -147887.727844] AUTODETECT spr round 4 (radius: 20)
[05:33:38 -137237.475516] AUTODETECT spr round 5 (radius: 25)
[05:39:38 -133431.917620] SPR radius for FAST iterations: 25 (autodetect)
[05:39:38 -133431.917620] Model parameter optimization (eps = 3.000000)
[05:40:12 -133369.137029] FAST spr round 1 (radius: 25)
[05:45:02 -120968.461419] FAST spr round 2 (radius: 25)
[05:48:15 -120562.780084] FAST spr round 3 (radius: 25)
[05:51:09 -120520.491731] FAST spr round 4 (radius: 25)
[05:53:05] [worker #1] ML tree search #12, logLikelihood: -120446.570212
[05:53:46 -120504.614887] FAST spr round 5 (radius: 25)
[05:56:11 -120504.613333] Model parameter optimization (eps = 1.000000)
[05:56:35 -120493.781516] SLOW spr round 1 (radius: 5)
[05:59:57 -120464.974563] SLOW spr round 2 (radius: 5)
[06:03:10 -120461.761812] SLOW spr round 3 (radius: 5)
[06:06:11 -120461.761277] SLOW spr round 4 (radius: 10)
[06:09:17 -120460.778759] SLOW spr round 5 (radius: 5)
[06:12:17] [worker #3] ML tree search #19, logLikelihood: -120436.528374
[06:13:05 -120460.778661] SLOW spr round 6 (radius: 10)
[06:16:29 -120460.778657] SLOW spr round 7 (radius: 15)
[06:21:04 -120460.778654] SLOW spr round 8 (radius: 20)
[06:28:12 -120460.778652] SLOW spr round 9 (radius: 25)
[06:37:17 -120460.778650] Model parameter optimization (eps = 0.100000)

[06:37:28] [worker #0] ML tree search #16, logLikelihood: -120460.502541

[06:42:32] [worker #4] ML tree search #20, logLikelihood: -120454.910594
[07:18:57] [worker #2] ML tree search #18, logLikelihood: -120452.090563
[07:19:17] [worker #1] ML tree search #17, logLikelihood: -120441.848313

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.201524,0.347226) (0.321977,0.441663) (0.286703,1.244822) (0.189796,2.270474) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -120436.528374

AIC score: 244855.056749 / AICc score: 8176999.056749 / BIC score: 251897.889275
Free parameters (model + branch lengths): 1991

WARNING: Number of free parameters (K=1991) is larger than alignment size (n=254).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8TD19/3_mltree/Q8TD19.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8TD19/3_mltree/Q8TD19.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8TD19/3_mltree/Q8TD19.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8TD19/3_mltree/Q8TD19.raxml.log

Analysis started: 11-Jul-2021 20:34:44 / finished: 12-Jul-2021 03:54:02

Elapsed time: 26358.101 seconds