RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 06-Jul-2021 14:35:41 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGN4/2_msa/Q8NGN4_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGN4/3_mltree/Q8NGN4 --seed 2 --threads 6 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGN4/2_msa/Q8NGN4_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 296 sites WARNING: Sequences tr_A0A2I3TGN9_A0A2I3TGN9_PANTR_9598 and tr_A0A2R8ZP77_A0A2R8ZP77_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3TH50_A0A2I3TH50_PANTR_9598 and tr_A0A2R8ZCU1_A0A2R8ZCU1_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A1D5QK77_A0A1D5QK77_MACMU_9544 and tr_G7P9P9_G7P9P9_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5QK77_A0A1D5QK77_MACMU_9544 and tr_A0A2K6CZL9_A0A2K6CZL9_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A287ANZ9_A0A287ANZ9_PIG_9823 and tr_A0A287B8T3_A0A287B8T3_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A096NYD3_A0A096NYD3_PAPAN_9555 and tr_A0A2K5KLB0_A0A2K5KLB0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3MBA2_A0A2I3MBA2_PAPAN_9555 and tr_A0A2K5ZKV6_A0A2K5ZKV6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1U7SI60_A0A1U7SI60_ALLSI_38654 and tr_A0A1U7SKT7_A0A1U7SKT7_ALLSI_38654 are exactly identical! WARNING: Duplicate sequences found: 8 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGN4/3_mltree/Q8NGN4.raxml.reduced.phy Alignment comprises 1 partitions and 296 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 296 / 296 Gaps: 0.45 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGN4/3_mltree/Q8NGN4.raxml.rba Parallelization scheme autoconfig: 6 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 296 / 23680 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -460719.283754] Initial branch length optimization [00:00:10 -400259.502871] Model parameter optimization (eps = 10.000000) [00:02:26 -396592.053978] AUTODETECT spr round 1 (radius: 5) [00:07:07 -260409.464860] AUTODETECT spr round 2 (radius: 10) [00:11:52 -179100.996287] AUTODETECT spr round 3 (radius: 15) [00:16:55 -151105.451349] AUTODETECT spr round 4 (radius: 20) [00:24:01 -136151.050043] AUTODETECT spr round 5 (radius: 25) [00:34:16 -134972.233064] SPR radius for FAST iterations: 25 (autodetect) [00:34:16 -134972.233064] Model parameter optimization (eps = 3.000000) [00:35:00 -134772.229245] FAST spr round 1 (radius: 25) [00:39:38 -117420.905564] FAST spr round 2 (radius: 25) [00:43:09 -116757.027304] FAST spr round 3 (radius: 25) [00:46:14 -116719.298498] FAST spr round 4 (radius: 25) [00:48:56 -116719.298474] Model parameter optimization (eps = 1.000000) [00:49:27 -116696.827163] SLOW spr round 1 (radius: 5) [00:53:41 -116661.554244] SLOW spr round 2 (radius: 5) [00:57:34 -116651.960916] SLOW spr round 3 (radius: 5) [01:01:19 -116648.449300] SLOW spr round 4 (radius: 5) [01:05:03 -116647.558912] SLOW spr round 5 (radius: 5) [01:08:38 -116647.558657] SLOW spr round 6 (radius: 10) [01:12:24 -116647.558657] SLOW spr round 7 (radius: 15) [01:19:01 -116647.558657] SLOW spr round 8 (radius: 20) [01:30:47 -116647.558657] SLOW spr round 9 (radius: 25) [01:39:32] [worker #4] ML tree search #5, logLikelihood: -116344.768743 [01:47:15 -116647.558657] Model parameter optimization (eps = 0.100000) [01:47:24] [worker #0] ML tree search #1, logLikelihood: -116647.468783 [01:47:24 -462805.888387] Initial branch length optimization [01:47:30 -401902.955808] Model parameter optimization (eps = 10.000000) [01:48:48 -400469.206740] AUTODETECT spr round 1 (radius: 5) [01:53:12 -256516.076598] AUTODETECT spr round 2 (radius: 10) [01:57:42 -173322.144781] AUTODETECT spr round 3 (radius: 15) [02:02:55 -146744.797128] AUTODETECT spr round 4 (radius: 20) [02:05:01] [worker #1] ML tree search #2, logLikelihood: -116342.611778 [02:10:35 -136197.177755] AUTODETECT spr round 5 (radius: 25) [02:18:07] [worker #2] ML tree search #3, logLikelihood: -116381.812157 [02:18:26 -134812.319634] SPR radius for FAST iterations: 25 (autodetect) [02:18:26 -134812.319634] Model parameter optimization (eps = 3.000000) [02:19:15 -134505.429595] FAST spr round 1 (radius: 25) [02:23:35 -117212.103612] FAST spr round 2 (radius: 25) [02:26:54 -116498.401219] FAST spr round 3 (radius: 25) [02:30:02 -116415.417494] FAST spr round 4 (radius: 25) [02:32:33] [worker #5] ML tree search #6, logLikelihood: -116339.489646 [02:32:53 -116404.759863] FAST spr round 5 (radius: 25) [02:35:36 -116400.256017] FAST spr round 6 (radius: 25) [02:38:08 -116400.256005] Model parameter optimization (eps = 1.000000) [02:38:30 -116393.281256] SLOW spr round 1 (radius: 5) [02:40:18] [worker #3] ML tree search #4, logLikelihood: -116330.845112 [02:42:26 -116357.005145] SLOW spr round 2 (radius: 5) [02:46:10 -116353.432822] SLOW spr round 3 (radius: 5) [02:49:44 -116353.432711] SLOW spr round 4 (radius: 10) [02:53:32 -116350.720489] SLOW spr round 5 (radius: 5) [02:58:14 -116350.720488] SLOW spr round 6 (radius: 10) [03:02:29 -116350.720488] SLOW spr round 7 (radius: 15) [03:08:48 -116350.720488] SLOW spr round 8 (radius: 20) [03:21:36 -116350.720488] SLOW spr round 9 (radius: 25) [03:39:09 -116350.720488] Model parameter optimization (eps = 0.100000) [03:39:18] [worker #0] ML tree search #7, logLikelihood: -116350.666881 [03:39:18 -462413.869290] Initial branch length optimization [03:39:25 -401460.591448] Model parameter optimization (eps = 10.000000) [03:40:54 -400039.422481] AUTODETECT spr round 1 (radius: 5) [03:42:57] [worker #4] ML tree search #11, logLikelihood: -116386.193546 [03:45:20 -261314.051256] AUTODETECT spr round 2 (radius: 10) [03:49:53 -174880.268252] AUTODETECT spr round 3 (radius: 15) [03:54:56 -140949.165849] AUTODETECT spr round 4 (radius: 20) [04:01:04 -136237.442629] AUTODETECT spr round 5 (radius: 25) [04:09:37 -133990.901271] SPR radius for FAST iterations: 25 (autodetect) [04:09:37 -133990.901271] Model parameter optimization (eps = 3.000000) [04:10:12 -133742.369319] FAST spr round 1 (radius: 25) [04:14:30 -117570.280669] FAST spr round 2 (radius: 25) [04:17:49 -116574.590947] FAST spr round 3 (radius: 25) [04:18:54] [worker #2] ML tree search #9, logLikelihood: -116340.670192 [04:20:52 -116491.317090] FAST spr round 4 (radius: 25) [04:23:34 -116486.503026] FAST spr round 5 (radius: 25) [04:24:23] [worker #1] ML tree search #8, logLikelihood: -116393.081384 [04:26:14 -116482.853674] FAST spr round 6 (radius: 25) [04:28:49 -116480.852005] FAST spr round 7 (radius: 25) [04:31:23 -116480.851985] Model parameter optimization (eps = 1.000000) [04:31:45 -116472.581271] SLOW spr round 1 (radius: 5) [04:35:40 -116426.977321] SLOW spr round 2 (radius: 5) [04:39:28 -116413.985055] SLOW spr round 3 (radius: 5) [04:43:07 -116411.749765] SLOW spr round 4 (radius: 5) [04:46:42 -116411.749742] SLOW spr round 5 (radius: 10) [04:50:27 -116409.946389] SLOW spr round 6 (radius: 5) [04:55:13 -116405.161219] SLOW spr round 7 (radius: 5) [04:59:19 -116405.161213] SLOW spr round 8 (radius: 10) [05:02:03] [worker #5] ML tree search #12, logLikelihood: -116375.935915 [05:03:09 -116405.161213] SLOW spr round 9 (radius: 15) [05:09:38 -116404.697106] SLOW spr round 10 (radius: 5) [05:14:39 -116403.639688] SLOW spr round 11 (radius: 5) [05:18:55 -116403.639490] SLOW spr round 12 (radius: 10) [05:22:50 -116402.707273] SLOW spr round 13 (radius: 5) [05:27:30 -116402.707273] SLOW spr round 14 (radius: 10) [05:31:38 -116402.707273] SLOW spr round 15 (radius: 15) [05:31:43] [worker #3] ML tree search #10, logLikelihood: -116364.367871 [05:37:49 -116402.707273] SLOW spr round 16 (radius: 20) [05:50:02 -116402.707273] SLOW spr round 17 (radius: 25) [06:07:17 -116402.707273] Model parameter optimization (eps = 0.100000) [06:07:25] [worker #2] ML tree search #15, logLikelihood: -116364.969549 [06:07:30] [worker #0] ML tree search #13, logLikelihood: -116402.528564 [06:07:30 -461418.714794] Initial branch length optimization [06:07:37 -400294.686927] Model parameter optimization (eps = 10.000000) [06:08:56 -398832.224892] AUTODETECT spr round 1 (radius: 5) [06:13:00] [worker #4] ML tree search #17, logLikelihood: -116683.971897 [06:13:21 -261331.637017] AUTODETECT spr round 2 (radius: 10) [06:17:50 -178354.438654] AUTODETECT spr round 3 (radius: 15) [06:23:05 -149704.968345] AUTODETECT spr round 4 (radius: 20) [06:29:42] [worker #1] ML tree search #14, logLikelihood: -116398.708892 [06:30:22 -136569.448516] AUTODETECT spr round 5 (radius: 25) [06:37:40 -135181.718648] SPR radius for FAST iterations: 25 (autodetect) [06:37:40 -135181.718648] Model parameter optimization (eps = 3.000000) [06:38:21 -134900.475329] FAST spr round 1 (radius: 25) [06:42:45 -117028.027456] FAST spr round 2 (radius: 25) [06:46:08 -116469.262496] FAST spr round 3 (radius: 25) [06:49:11 -116425.503188] FAST spr round 4 (radius: 25) [06:52:00 -116412.476126] FAST spr round 5 (radius: 25) [06:54:37 -116409.921747] FAST spr round 6 (radius: 25) [06:57:08 -116409.921674] Model parameter optimization (eps = 1.000000) [06:57:28 -116397.763176] SLOW spr round 1 (radius: 5) [07:01:26 -116375.793669] SLOW spr round 2 (radius: 5) [07:05:14 -116364.397601] SLOW spr round 3 (radius: 5) [07:08:51 -116361.671463] SLOW spr round 4 (radius: 5) [07:12:22 -116358.008767] SLOW spr round 5 (radius: 5) [07:15:24] [worker #5] ML tree search #18, logLikelihood: -116362.125127 [07:15:53 -116358.008766] SLOW spr round 6 (radius: 10) [07:19:38 -116357.114444] SLOW spr round 7 (radius: 5) [07:24:20 -116356.066361] SLOW spr round 8 (radius: 5) [07:28:21 -116356.066359] SLOW spr round 9 (radius: 10) [07:32:13 -116355.466927] SLOW spr round 10 (radius: 5) [07:36:53 -116354.845621] SLOW spr round 11 (radius: 5) [07:40:53 -116354.845618] SLOW spr round 12 (radius: 10) [07:41:09] [worker #3] ML tree search #16, logLikelihood: -116317.296831 [07:44:45 -116353.718158] SLOW spr round 13 (radius: 5) [07:49:26 -116350.631923] SLOW spr round 14 (radius: 5) [07:53:26 -116350.631923] SLOW spr round 15 (radius: 10) [07:57:16 -116350.332482] SLOW spr round 16 (radius: 5) [08:01:56 -116346.962478] SLOW spr round 17 (radius: 5) [08:05:56 -116346.662280] SLOW spr round 18 (radius: 5) [08:09:38 -116346.662268] SLOW spr round 19 (radius: 10) [08:13:23 -116346.662268] SLOW spr round 20 (radius: 15) [08:20:04 -116346.662268] SLOW spr round 21 (radius: 20) [08:32:07 -116346.662268] SLOW spr round 22 (radius: 25) [08:49:39 -116346.662268] Model parameter optimization (eps = 0.100000) [08:49:58] [worker #0] ML tree search #19, logLikelihood: -116346.231904 [08:50:34] [worker #1] ML tree search #20, logLikelihood: -116367.761770 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.268677,0.430173) (0.326631,0.611275) (0.336757,1.515156) (0.067935,2.568949) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -116317.296831 AIC score: 236644.593663 / AICc score: 8280704.593663 / BIC score: 244043.764369 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=296). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGN4/3_mltree/Q8NGN4.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGN4/3_mltree/Q8NGN4.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGN4/3_mltree/Q8NGN4.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGN4/3_mltree/Q8NGN4.raxml.log Analysis started: 06-Jul-2021 14:35:41 / finished: 06-Jul-2021 23:26:16 Elapsed time: 31834.997 seconds Consumed energy: 2341.982 Wh (= 12 km in an electric car, or 59 km with an e-scooter!)