RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 05-Jul-2021 12:54:30 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGJ7/2_msa/Q8NGJ7_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGJ7/3_mltree/Q8NGJ7 --seed 2 --threads 6 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGJ7/2_msa/Q8NGJ7_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 293 sites WARNING: Sequences tr_M3Z6Q6_M3Z6Q6_MUSPF_9669 and tr_M3Z8V3_M3Z8V3_MUSPF_9669 are exactly identical! WARNING: Sequences tr_M3Z771_M3Z771_MUSPF_9669 and tr_A0A2Y9KUL4_A0A2Y9KUL4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I2ZUI7_A0A2I2ZUI7_GORGO_9595 and tr_A0A2J8P6V2_A0A2J8P6V2_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZUI7_A0A2I2ZUI7_GORGO_9595 and sp_Q9H255_O51E2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZUI7_A0A2I2ZUI7_GORGO_9595 and tr_A0A2R8ZJR1_A0A2R8ZJR1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2R5M1_H2R5M1_PANTR_9598 and tr_A0A2R8Z5R5_A0A2R8Z5R5_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7E8I0_F7E8I0_MONDO_13616 and tr_F7FBW8_F7FBW8_MONDO_13616 are exactly identical! WARNING: Sequences tr_F6ZU41_F6ZU41_MACMU_9544 and tr_G7PQY8_G7PQY8_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6ZU41_F6ZU41_MACMU_9544 and tr_A0A2I3N8P3_A0A2I3N8P3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6ZU41_F6ZU41_MACMU_9544 and tr_A0A0D9SDD0_A0A0D9SDD0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6ZU41_F6ZU41_MACMU_9544 and tr_A0A2K5KLT0_A0A2K5KLT0_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6ZU41_F6ZU41_MACMU_9544 and tr_A0A2K6AXB4_A0A2K6AXB4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6ZU41_F6ZU41_MACMU_9544 and tr_A0A2K5XHY9_A0A2K5XHY9_MANLE_9568 are exactly identical! WARNING: Sequences tr_F1MT94_F1MT94_BOVIN_9913 and tr_F1MTE2_F1MTE2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A226MCY9_A0A226MCY9_CALSU_9009 and tr_A0A226P172_A0A226P172_COLVI_9014 are exactly identical! WARNING: Duplicate sequences found: 15 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGJ7/3_mltree/Q8NGJ7.raxml.reduced.phy Alignment comprises 1 partitions and 293 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 293 / 293 Gaps: 0.38 % Invariant sites: 1.02 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGJ7/3_mltree/Q8NGJ7.raxml.rba Parallelization scheme autoconfig: 6 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 293 / 23440 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -412504.448347] Initial branch length optimization [00:00:05 -361948.275158] Model parameter optimization (eps = 10.000000) [00:01:03 -360588.911196] AUTODETECT spr round 1 (radius: 5) [00:04:56 -267354.776323] AUTODETECT spr round 2 (radius: 10) [00:09:19 -165036.370242] AUTODETECT spr round 3 (radius: 15) [00:14:13 -125129.015711] AUTODETECT spr round 4 (radius: 20) [00:21:39 -119914.762441] AUTODETECT spr round 5 (radius: 25) [00:29:37 -119712.862236] SPR radius for FAST iterations: 25 (autodetect) [00:29:37 -119712.862236] Model parameter optimization (eps = 3.000000) [00:30:06 -119624.725828] FAST spr round 1 (radius: 25) [00:33:25 -105505.096913] FAST spr round 2 (radius: 25) [00:36:10 -105004.635848] FAST spr round 3 (radius: 25) [00:38:47 -104954.771155] FAST spr round 4 (radius: 25) [00:41:09 -104952.370963] FAST spr round 5 (radius: 25) [00:43:29 -104951.188659] FAST spr round 6 (radius: 25) [00:45:46 -104951.188658] Model parameter optimization (eps = 1.000000) [00:46:03 -104949.988740] SLOW spr round 1 (radius: 5) [00:49:26 -104910.720267] SLOW spr round 2 (radius: 5) [00:52:50 -104905.665267] SLOW spr round 3 (radius: 5) [00:55:59 -104904.466100] SLOW spr round 4 (radius: 5) [00:59:03 -104904.466075] SLOW spr round 5 (radius: 10) [01:02:31 -104892.385144] SLOW spr round 6 (radius: 5) [01:06:58 -104886.419438] SLOW spr round 7 (radius: 5) [01:10:42 -104886.419423] SLOW spr round 8 (radius: 10) [01:14:04 -104886.419423] SLOW spr round 9 (radius: 15) [01:20:27 -104886.419422] SLOW spr round 10 (radius: 20) [01:35:17 -104886.419422] SLOW spr round 11 (radius: 25) [01:42:16] [worker #3] ML tree search #4, logLikelihood: -104882.999735 [01:47:50] [worker #1] ML tree search #2, logLikelihood: -104869.808450 [01:49:11] [worker #2] ML tree search #3, logLikelihood: -104869.906330 [01:51:52 -104886.419422] Model parameter optimization (eps = 0.100000) [01:52:02] [worker #0] ML tree search #1, logLikelihood: -104886.366058 [01:52:02 -411525.304232] Initial branch length optimization [01:52:07 -361699.524664] Model parameter optimization (eps = 10.000000) [01:53:27 -358891.250220] AUTODETECT spr round 1 (radius: 5) [01:56:59] [worker #4] ML tree search #5, logLikelihood: -104872.465901 [01:57:27 -268146.375356] AUTODETECT spr round 2 (radius: 10) [02:01:50 -166130.638598] AUTODETECT spr round 3 (radius: 15) [02:07:10 -125430.942115] AUTODETECT spr round 4 (radius: 20) [02:15:19 -120537.314010] AUTODETECT spr round 5 (radius: 25) [02:18:10] [worker #5] ML tree search #6, logLikelihood: -104875.863219 [02:25:24 -120466.444975] SPR radius for FAST iterations: 25 (autodetect) [02:25:24 -120466.444975] Model parameter optimization (eps = 3.000000) [02:25:51 -120399.923240] FAST spr round 1 (radius: 25) [02:29:21 -105805.286839] FAST spr round 2 (radius: 25) [02:32:20 -105226.632030] FAST spr round 3 (radius: 25) [02:35:02 -105138.503287] FAST spr round 4 (radius: 25) [02:37:34 -105121.809275] FAST spr round 5 (radius: 25) [02:39:58 -105120.453266] FAST spr round 6 (radius: 25) [02:42:16 -105120.453260] Model parameter optimization (eps = 1.000000) [02:42:38 -105118.069312] SLOW spr round 1 (radius: 5) [02:46:07 -105084.347325] SLOW spr round 2 (radius: 5) [02:49:26 -105084.111075] SLOW spr round 3 (radius: 5) [02:52:38 -105084.111052] SLOW spr round 4 (radius: 10) [02:56:08 -105080.366781] SLOW spr round 5 (radius: 5) [03:00:39 -105077.841132] SLOW spr round 6 (radius: 5) [03:04:22 -105077.554688] SLOW spr round 7 (radius: 5) [03:07:51 -105077.554671] SLOW spr round 8 (radius: 10) [03:11:14 -105077.303320] SLOW spr round 9 (radius: 5) [03:15:39 -105074.085922] SLOW spr round 10 (radius: 5) [03:19:22 -105071.067993] SLOW spr round 11 (radius: 5) [03:22:45 -105071.067981] SLOW spr round 12 (radius: 10) [03:24:03] [worker #1] ML tree search #8, logLikelihood: -104871.345984 [03:26:15 -105071.067981] SLOW spr round 13 (radius: 15) [03:31:44] [worker #3] ML tree search #10, logLikelihood: -104872.026937 [03:33:15 -105071.067981] SLOW spr round 14 (radius: 20) [03:41:40] [worker #2] ML tree search #9, logLikelihood: -104871.367399 [03:44:18] [worker #4] ML tree search #11, logLikelihood: -104880.434660 [03:48:32 -105071.067981] SLOW spr round 15 (radius: 25) [04:01:44] [worker #5] ML tree search #12, logLikelihood: -104897.379793 [04:05:23 -105071.067981] Model parameter optimization (eps = 0.100000) [04:05:37] [worker #0] ML tree search #7, logLikelihood: -105070.947418 [04:05:37 -413030.441558] Initial branch length optimization [04:05:44 -361899.919983] Model parameter optimization (eps = 10.000000) [04:06:59 -360601.061051] AUTODETECT spr round 1 (radius: 5) [04:10:53 -269461.155154] AUTODETECT spr round 2 (radius: 10) [04:15:12 -166405.457215] AUTODETECT spr round 3 (radius: 15) [04:19:50 -130419.653307] AUTODETECT spr round 4 (radius: 20) [04:26:33 -123426.582643] AUTODETECT spr round 5 (radius: 25) [04:36:08 -123125.191912] SPR radius for FAST iterations: 25 (autodetect) [04:36:08 -123125.191912] Model parameter optimization (eps = 3.000000) [04:36:41 -123066.533571] FAST spr round 1 (radius: 25) [04:40:23 -105611.646694] FAST spr round 2 (radius: 25) [04:43:21 -105025.018758] FAST spr round 3 (radius: 25) [04:46:08 -104933.344515] FAST spr round 4 (radius: 25) [04:48:30 -104928.902194] FAST spr round 5 (radius: 25) [04:50:43 -104928.519351] FAST spr round 6 (radius: 25) [04:52:55 -104928.519351] Model parameter optimization (eps = 1.000000) [04:53:11 -104925.228489] SLOW spr round 1 (radius: 5) [04:56:43 -104893.534170] SLOW spr round 2 (radius: 5) [04:59:56 -104887.140212] SLOW spr round 3 (radius: 5) [05:02:18] [worker #1] ML tree search #14, logLikelihood: -104858.090652 [05:03:02 -104887.139945] SLOW spr round 4 (radius: 10) [05:06:19 -104886.292682] SLOW spr round 5 (radius: 5) [05:10:34 -104886.292676] SLOW spr round 6 (radius: 10) [05:13:36] [worker #3] ML tree search #16, logLikelihood: -104886.343346 [05:14:09 -104886.292676] SLOW spr round 7 (radius: 15) [05:20:49 -104886.292676] SLOW spr round 8 (radius: 20) [05:25:42] [worker #2] ML tree search #15, logLikelihood: -104869.658418 [05:35:47 -104886.292676] SLOW spr round 9 (radius: 25) [05:36:33] [worker #4] ML tree search #17, logLikelihood: -105098.413489 [05:51:47 -104886.292676] Model parameter optimization (eps = 0.100000) [05:51:55] [worker #0] ML tree search #13, logLikelihood: -104886.270523 [05:51:55 -409608.817246] Initial branch length optimization [05:52:00 -360112.850550] Model parameter optimization (eps = 10.000000) [05:53:07 -358841.332920] AUTODETECT spr round 1 (radius: 5) [05:53:10] [worker #5] ML tree search #18, logLikelihood: -104891.523057 [05:57:10 -269775.148320] AUTODETECT spr round 2 (radius: 10) [06:01:44 -163967.339362] AUTODETECT spr round 3 (radius: 15) [06:06:23 -126782.330738] AUTODETECT spr round 4 (radius: 20) [06:13:14 -119648.756005] AUTODETECT spr round 5 (radius: 25) [06:23:02 -118614.792501] SPR radius for FAST iterations: 25 (autodetect) [06:23:02 -118614.792501] Model parameter optimization (eps = 3.000000) [06:23:32 -118551.044740] FAST spr round 1 (radius: 25) [06:26:55 -105599.299019] FAST spr round 2 (radius: 25) [06:29:46 -104992.341519] FAST spr round 3 (radius: 25) [06:32:25 -104920.440784] FAST spr round 4 (radius: 25) [06:34:46 -104917.007811] FAST spr round 5 (radius: 25) [06:37:04 -104916.530295] FAST spr round 6 (radius: 25) [06:39:20 -104916.530294] Model parameter optimization (eps = 1.000000) [06:39:41] [worker #1] ML tree search #20, logLikelihood: -104884.281529 [06:39:45 -104912.712617] SLOW spr round 1 (radius: 5) [06:43:12 -104882.321433] SLOW spr round 2 (radius: 5) [06:46:37 -104881.044737] SLOW spr round 3 (radius: 5) [06:49:44 -104881.044202] SLOW spr round 4 (radius: 10) [06:52:59 -104881.044196] SLOW spr round 5 (radius: 15) [06:59:34 -104881.044196] SLOW spr round 6 (radius: 20) [07:13:53 -104881.044196] SLOW spr round 7 (radius: 25) [07:30:09 -104881.044196] Model parameter optimization (eps = 0.100000) [07:30:27] [worker #0] ML tree search #19, logLikelihood: -104880.826836 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.304728,0.446210) (0.335143,0.643423) (0.315292,1.639364) (0.044838,2.933045) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -104858.090652 AIC score: 213726.181305 / AICc score: 8257786.181305 / BIC score: 221104.927386 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=293). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGJ7/3_mltree/Q8NGJ7.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGJ7/3_mltree/Q8NGJ7.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGJ7/3_mltree/Q8NGJ7.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NGJ7/3_mltree/Q8NGJ7.raxml.log Analysis started: 05-Jul-2021 12:54:30 / finished: 05-Jul-2021 20:24:58 Elapsed time: 27027.794 seconds Consumed energy: 2354.012 Wh (= 12 km in an electric car, or 59 km with an e-scooter!)