RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 17:47:34 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NBV8/2_msa/Q8NBV8_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NBV8/3_mltree/Q8NBV8.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NBV8/4_raxmlng_ancestral/Q8NBV8 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626101254 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NBV8/2_msa/Q8NBV8_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 401 sites WARNING: Sequences tr_B4Q8K7_B4Q8K7_DROSI_7240 and tr_B4I2Q5_B4I2Q5_DROSE_7238 are exactly identical! WARNING: Sequences sp_P46096_SYT1_MOUSE_10090 and sp_P21707_SYT1_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and tr_G1QYR5_G1QYR5_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and tr_H2R3R2_H2R3R2_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and sp_P21579_SYT1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and tr_F7GFB1_F7GFB1_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and tr_U3CTJ2_U3CTJ2_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and tr_G7PIJ5_G7PIJ5_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and sp_P48018_SYT1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and tr_A0A096MSC6_A0A096MSC6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and tr_A0A1U7TGJ5_A0A1U7TGJ5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and tr_A0A2K5M2T0_A0A2K5M2T0_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and tr_A0A2K6BM63_A0A2K6BM63_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and tr_A0A2K5Y7K4_A0A2K5Y7K4_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and tr_A0A2R9A4D0_A0A2R9A4D0_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3Z191_M3Z191_MUSPF_9669 and tr_A0A2Y9IQN1_A0A2Y9IQN1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G3QPB7_G3QPB7_GORGO_9595 and tr_A0A2J8QWL9_A0A2J8QWL9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QPB7_G3QPB7_GORGO_9595 and sp_Q8N9I0_SYT2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QPB7_G3QPB7_GORGO_9595 and tr_A0A2R9BB69_A0A2R9BB69_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R0Z1_G3R0Z1_GORGO_9595 and tr_A0A2J8IWZ5_A0A2J8IWZ5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R0Z1_G3R0Z1_GORGO_9595 and sp_O00445_SYT5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RUH1_G3RUH1_GORGO_9595 and tr_A0A2I3S3Y2_A0A2I3S3Y2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RUH1_G3RUH1_GORGO_9595 and tr_A0A096MPA7_A0A096MPA7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RUH1_G3RUH1_GORGO_9595 and tr_A0A2K6EAT1_A0A2K6EAT1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2J8U8Z9_A0A2J8U8Z9_PONAB_9601 and sp_Q9BQG1_SYT3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2ND77_H2ND77_PONAB_9601 and tr_G7PPX7_G7PPX7_MACFA_9541 are exactly identical! WARNING: Sequences tr_Q29KW1_Q29KW1_DROPS_46245 and tr_B4GSQ9_B4GSQ9_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2R521_E2R521_CANLF_9615 and tr_G1M2R5_G1M2R5_AILME_9646 are exactly identical! WARNING: Sequences tr_E2R521_E2R521_CANLF_9615 and tr_M3WNT1_M3WNT1_FELCA_9685 are exactly identical! WARNING: Sequences tr_E2R521_E2R521_CANLF_9615 and tr_A0A2U3WLZ8_A0A2U3WLZ8_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1Q293_F1Q293_CANLF_9615 and tr_H0XR59_H0XR59_OTOGA_30611 are exactly identical! WARNING: Sequences tr_H2Q338_H2Q338_PANTR_9598 and sp_Q86SS6_SYT9_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2Q338_H2Q338_PANTR_9598 and tr_A0A2R9C6N3_A0A2R9C6N3_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5Q083_W5Q083_SHEEP_9940 and tr_A0A2Y9M3I5_A0A2Y9M3I5_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5Q083_W5Q083_SHEEP_9940 and tr_A0A2Y9SMH3_A0A2Y9SMH3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5Q3L1_W5Q3L1_SHEEP_9940 and tr_F1MVI4_F1MVI4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A158NE18_A0A158NE18_ATTCE_12957 and tr_F4X438_F4X438_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NE18_A0A158NE18_ATTCE_12957 and tr_A0A151I0A6_A0A151I0A6_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NE18_A0A158NE18_ATTCE_12957 and tr_A0A151IIL1_A0A151IIL1_9HYME_456900 are exactly identical! WARNING: Sequences tr_I3MUB7_I3MUB7_ICTTR_43179 and tr_G5C9J0_G5C9J0_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A0H5SPI7_A0A0H5SPI7_BRUMA_6279 and tr_A0A0N4TIW5_A0A0N4TIW5_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0H5SPI7_A0A0H5SPI7_BRUMA_6279 and tr_A0A0R3R0T2_A0A0R3R0T2_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A1D5R7T9_A0A1D5R7T9_MACMU_9544 and tr_A0A2I3LWE8_A0A2I3LWE8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5R7T9_A0A1D5R7T9_MACMU_9544 and tr_A0A2K5NCN7_A0A2K5NCN7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5R7T9_A0A1D5R7T9_MACMU_9544 and tr_A0A2K6CE51_A0A2K6CE51_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6XQZ0_F6XQZ0_MACMU_9544 and tr_G7NWD9_G7NWD9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6XQZ0_F6XQZ0_MACMU_9544 and tr_A0A0D9RNU7_A0A0D9RNU7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6XQZ0_F6XQZ0_MACMU_9544 and tr_A0A2K6EAW5_A0A2K6EAW5_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0ZMQ2_H0ZMQ2_TAEGU_59729 and tr_A0A218V1J3_A0A218V1J3_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZMQ2_H0ZMQ2_TAEGU_59729 and tr_A0A226MP97_A0A226MP97_CALSU_9009 are exactly identical! WARNING: Sequences tr_U3D3N3_U3D3N3_CALJA_9483 and tr_A0A091D2G8_A0A091D2G8_FUKDA_885580 are exactly identical! WARNING: Sequences tr_E3M004_E3M004_CAERE_31234 and tr_A0A1I7T4Y0_A0A1I7T4Y0_9PELO_1561998 are exactly identical! WARNING: Sequences tr_B3SBZ4_B3SBZ4_TRIAD_10228 and tr_A0A369RWB7_A0A369RWB7_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3SBZ5_B3SBZ5_TRIAD_10228 and tr_A0A369RVW2_A0A369RVW2_9METZ_287889 are exactly identical! WARNING: Sequences tr_G7PYE9_G7PYE9_MACFA_9541 and tr_A0A2K5LZ34_A0A2K5LZ34_CERAT_9531 are exactly identical! WARNING: Sequences tr_U3K7D1_U3K7D1_FICAL_59894 and tr_A0A218URZ9_A0A218URZ9_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A096NPR1_A0A096NPR1_PAPAN_9555 and tr_A0A2K5NYD0_A0A2K5NYD0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0A0MVP0_A0A0A0MVP0_PAPAN_9555 and tr_A0A0D9S4W8_A0A0D9S4W8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3LF68_A0A2I3LF68_PAPAN_9555 and tr_A0A2K5KW82_A0A2K5KW82_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3LF68_A0A2I3LF68_PAPAN_9555 and tr_A0A2K5Y4C6_A0A2K5Y4C6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A090LHP3_A0A090LHP3_STRRB_34506 and tr_A0A0N5BS92_A0A0N5BS92_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A151NID4_A0A151NID4_ALLMI_8496 and tr_A0A1U7RM90_A0A1U7RM90_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NSQ7_A0A151NSQ7_ALLMI_8496 and tr_A0A1U7R008_A0A1U7R008_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091JDX7_A0A091JDX7_EGRGA_188379 and tr_A0A087RKB6_A0A087RKB6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JDX7_A0A091JDX7_EGRGA_188379 and tr_A0A0A0B204_A0A0A0B204_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JDX7_A0A091JDX7_EGRGA_188379 and tr_A0A093G2F2_A0A093G2F2_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A093SHV8_A0A093SHV8_9PASS_328815 and tr_A0A093HA34_A0A093HA34_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A093SHV8_A0A093SHV8_9PASS_328815 and tr_A0A091WHN1_A0A091WHN1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A093SHV8_A0A093SHV8_9PASS_328815 and tr_A0A091G777_A0A091G777_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A093SHV8_A0A093SHV8_9PASS_328815 and tr_A0A0A0B1G8_A0A0A0B1G8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091W180_A0A091W180_NIPNI_128390 and tr_A0A091WNU9_A0A091WNU9_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091WLG7_A0A091WLG7_OPIHO_30419 and tr_A0A0A0ALS7_A0A0A0ALS7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0LZU1_A0A2I0LZU1_COLLI_8932 and tr_A0A1V4KG22_A0A1V4KG22_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1CW84_A0A0V1CW84_TRIBR_45882 and tr_A0A0V0V2M3_A0A0V0V2M3_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CW84_A0A0V1CW84_TRIBR_45882 and tr_A0A0V1LUX6_A0A0V1LUX6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CW84_A0A0V1CW84_TRIBR_45882 and tr_A0A0V1A9M5_A0A0V1A9M5_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1CW84_A0A0V1CW84_TRIBR_45882 and tr_A0A0V1NXH9_A0A0V1NXH9_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CW84_A0A0V1CW84_TRIBR_45882 and tr_A0A0V0UHU1_A0A0V0UHU1_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0VP69_A0A0V0VP69_9BILA_181606 and tr_A0A0V1L3W4_A0A0V1L3W4_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1PA79_A0A0V1PA79_9BILA_92180 and tr_A0A0V0UA16_A0A0V0UA16_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A151ISN2_A0A151ISN2_9HYME_471704 and tr_A0A151JXM3_A0A151JXM3_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A151ISN2_A0A151ISN2_9HYME_471704 and tr_A0A151IIM1_A0A151IIM1_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1S3K264_A0A1S3K264_LINUN_7574 and tr_A0A1S3K2I0_A0A1S3K2I0_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A226NHV1_A0A226NHV1_CALSU_9009 and tr_A0A226NXR2_A0A226NXR2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0RVL3_A0A2D0RVL3_ICTPU_7998 and tr_A0A2D0RX54_A0A2D0RX54_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T3U6_A0A2D0T3U6_ICTPU_7998 and tr_W5UJ63_W5UJ63_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K6DYL4_A0A2K6DYL4_MACNE_9545 and tr_A0A2K5XLY6_A0A2K5XLY6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4A1B7_A0A2U4A1B7_TURTR_9739 and tr_A0A2Y9SAH2_A0A2Y9SAH2_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 88 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NBV8/4_raxmlng_ancestral/Q8NBV8.raxml.reduced.phy Alignment comprises 1 partitions and 401 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 401 Gaps: 19.03 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NBV8/4_raxmlng_ancestral/Q8NBV8.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NBV8/3_mltree/Q8NBV8.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 101 / 8080 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -100261.190712 [00:00:00 -100261.190712] Initial branch length optimization [00:00:01 -99772.257632] Model parameter optimization (eps = 0.100000) [00:00:51] Tree #1, final logLikelihood: -99530.628319 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.168517,0.341528) (0.194534,0.421318) (0.378704,0.832095) (0.258245,2.111822) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NBV8/4_raxmlng_ancestral/Q8NBV8.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NBV8/4_raxmlng_ancestral/Q8NBV8.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NBV8/4_raxmlng_ancestral/Q8NBV8.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8NBV8/4_raxmlng_ancestral/Q8NBV8.raxml.log Analysis started: 12-Jul-2021 17:47:34 / finished: 12-Jul-2021 17:48:30 Elapsed time: 55.627 seconds Consumed energy: 4.748 Wh