RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 04-Jul-2021 08:01:47 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7Z5/2_msa/Q8N7Z5_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7Z5/3_mltree/Q8N7Z5 --seed 2 --threads 2 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7Z5/2_msa/Q8N7Z5_trimmed_msa.fasta
[00:00:00] Loaded alignment with 994 taxa and 119 sites

WARNING: Sequences tr_E2A135_E2A135_CAMFO_104421 and tr_E2AIJ1_E2AIJ1_CAMFO_104421 are exactly identical!
WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A091JN73_A0A091JN73_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A093HDV8_A0A093HDV8_STRCA_441894 are exactly identical!
WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A0A0A3H5_A0A0A0A3H5_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A2I0MXN5_A0A2I0MXN5_COLLI_8932 are exactly identical!
WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A226NGD6_A0A226NGD6_CALSU_9009 are exactly identical!
WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A226P1U1_A0A226P1U1_COLVI_9014 are exactly identical!
WARNING: Sequences tr_F1NZP1_F1NZP1_CHICK_9031 and tr_G1MST7_G1MST7_MELGA_9103 are exactly identical!
WARNING: Sequences sp_E9Q4F7_ANR11_MOUSE_10090 and tr_A0A1U8BV00_A0A1U8BV00_MESAU_10036 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_M3Y008_M3Y008_MUSPF_9669 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G1R5J4_G1R5J4_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G1PBX6_G1PBX6_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G3HZ26_G3HZ26_CRIGR_10029 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G3SDW9_G3SDW9_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_H2NVV6_H2NVV6_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G1TYL7_G1TYL7_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_E2QVN0_E2QVN0_CANLF_9615 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_K7CPS3_K7CPS3_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_F7BFZ6_F7BFZ6_HORSE_9796 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_W5NS66_W5NS66_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_H0Y0A3_H0Y0A3_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and sp_Q6UB98_ANR12_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G3T5S5_G3T5S5_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_U3EHI1_U3EHI1_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_F1SM99_F1SM99_PIG_9823 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_D2H765_D2H765_AILME_9646 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_E1BKN6_E1BKN6_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_L5K4Q0_L5K4Q0_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A337S763_A0A337S763_FELCA_9685 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A096N7Y0_A0A096N7Y0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A0D9RYA1_A0A0D9RYA1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2K5MD58_A0A2K5MD58_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2K6CNP3_A0A2K6CNP3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2K5Z7H5_A0A2K5Z7H5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2R9ABR7_A0A2R9ABR7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2U4A5H0_A0A2U4A5H0_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2U3WXT2_A0A2U3WXT2_ODORO_9708 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2U3YFH8_A0A2U3YFH8_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2Y9E290_A0A2Y9E290_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2Y9LBM1_A0A2Y9LBM1_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2Y9F494_A0A2Y9F494_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A384C0F8_A0A384C0F8_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A384B9P3_A0A384B9P3_BALAS_310752 are exactly identical!
WARNING: Sequences sp_Q8CGN4_BCOR_MOUSE_10090 and tr_D4A2J9_D4A2J9_RAT_10116 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A2I3GHX6_A0A2I3GHX6_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_G3QKE5_G3QKE5_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_H2PWF9_H2PWF9_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_G1T026_G1T026_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_E2RA22_E2RA22_CANLF_9615 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_H2R235_H2R235_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_F6V2T7_F6V2T7_HORSE_9796 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_I3M2Y9_I3M2Y9_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_H0VSH6_H0VSH6_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and sp_O75832_PSD10_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_F7I2A1_F7I2A1_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A287BTN9_A0A287BTN9_PIG_9823 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_G1L817_G1L817_AILME_9646 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_M3X4N2_M3X4N2_FELCA_9685 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A1S3A7E8_A0A1S3A7E8_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A1U7UY97_A0A1U7UY97_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A2R9B2I6_A0A2R9B2I6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A2U3V7Q4_A0A2U3V7Q4_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A2U3ZV10_A0A2U3ZV10_ODORO_9708 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A2Y9L2W8_A0A2Y9L2W8_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A2Y9LUI9_A0A2Y9LUI9_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A2Y9EFA8_A0A2Y9EFA8_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A384CKV5_A0A384CKV5_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G9KJ01_G9KJ01_MUSPF_9669 and tr_A0A384B9U4_A0A384B9U4_BALAS_310752 are exactly identical!
WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_F1Q0W4_F1Q0W4_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2U3X4F2_A0A2U3X4F2_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2Y9JHR5_A0A2Y9JHR5_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Y2T5_M3Y2T5_MUSPF_9669 and tr_A0A0D9RSC5_A0A0D9RSC5_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_J9PAS0_J9PAS0_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_G1L2M0_G1L2M0_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_A0A2U3ZDJ5_A0A2U3ZDJ5_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_A0A2U3YN86_A0A2U3YN86_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_A0A2Y9K1X3_A0A2Y9K1X3_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_A0A384D2R8_A0A384D2R8_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_G3GSG2_G3GSG2_CRIGR_10029 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_G3RG00_G3RG00_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_H2PVB6_H2PVB6_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_K7CY39_K7CY39_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_W5NSC7_W5NSC7_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_H0WUU9_H0WUU9_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_H0V1W3_H0V1W3_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and sp_Q6W2J9_BCOR_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_F7BB89_F7BB89_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_F7I844_F7I844_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_G7Q2I7_G7Q2I7_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_G3X8E4_G3X8E4_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_L5K8P4_L5K8P4_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_A0A096N4A9_A0A096N4A9_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_A0A091DB30_A0A091DB30_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_A0A0D9RNG3_A0A0D9RNG3_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_A0A1S2ZLF1_A0A1S2ZLF1_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_A0A1S3G1N8_A0A1S3G1N8_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_A0A1U7SZH2_A0A1U7SZH2_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_A0A1U7QTL1_A0A1U7QTL1_MESAU_10036 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_A0A2K5MHN3_A0A2K5MHN3_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_A0A2K6B3Y7_A0A2K6B3Y7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_A0A2K5XWI4_A0A2K5XWI4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1QL55_G1QL55_NOMLE_61853 and tr_A0A2R8ZUV0_A0A2R8ZUV0_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1PQ85_G1PQ85_MYOLU_59463 and tr_L5KI52_L5KI52_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_H2NRT8_H2NRT8_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_I3N9D7_I3N9D7_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and sp_Q6UB99_ANR11_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_F7H0T3_F7H0T3_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_G3UAA2_G3UAA2_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_L5JNK4_L5JNK4_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A096MZ63_A0A096MZ63_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A0D9S2V2_A0A0D9S2V2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A1U7TT26_A0A1U7TT26_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A2K6CLH8_A0A2K6CLH8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A2K5XYL5_A0A2K5XYL5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A2R9AHV0_A0A2R9AHV0_PANPA_9597 are exactly identical!
WARNING: Sequences tr_J3K7D8_J3K7D8_COCIM_246410 and tr_A0A0J6Y3E3_A0A0J6Y3E3_COCIT_404692 are exactly identical!
WARNING: Sequences tr_A0A2I2Y830_A0A2I2Y830_GORGO_9595 and tr_A0A2I3SEM0_A0A2I3SEM0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2Y830_A0A2I2Y830_GORGO_9595 and sp_Q99728_BARD1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I2Y830_A0A2I2Y830_GORGO_9595 and tr_A0A2R9CGG0_A0A2R9CGG0_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2Z394_A0A2I2Z394_GORGO_9595 and tr_H2PG36_H2PG36_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A2I2Z394_A0A2I2Z394_GORGO_9595 and tr_K7AZ13_K7AZ13_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2Z394_A0A2I2Z394_GORGO_9595 and sp_Q9BQI6_SLF1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I2Z394_A0A2I2Z394_GORGO_9595 and tr_F7CZP2_F7CZP2_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A2I2Z394_A0A2I2Z394_GORGO_9595 and tr_G7P7Y5_G7P7Y5_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A2I2Z394_A0A2I2Z394_GORGO_9595 and tr_A0A0D9RQ16_A0A0D9RQ16_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I2Z394_A0A2I2Z394_GORGO_9595 and tr_A0A2K5P771_A0A2K5P771_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I2Z394_A0A2I2Z394_GORGO_9595 and tr_A0A2K6DWI4_A0A2K6DWI4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I2Z394_A0A2I2Z394_GORGO_9595 and tr_A0A2K5YGL6_A0A2K5YGL6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2I2Z394_A0A2I2Z394_GORGO_9595 and tr_A0A2R9CP52_A0A2R9CP52_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1N7A2_G1N7A2_MELGA_9103 and tr_K7G9F1_K7G9F1_PELSI_13735 are exactly identical!
WARNING: Sequences tr_G1N7A2_G1N7A2_MELGA_9103 and tr_A0A226NC66_A0A226NC66_CALSU_9009 are exactly identical!
WARNING: Sequences tr_G1N7A2_G1N7A2_MELGA_9103 and tr_A0A226PEB1_A0A226PEB1_COLVI_9014 are exactly identical!
WARNING: Sequences tr_Q2M112_Q2M112_DROPS_46245 and tr_B4GQT7_B4GQT7_DROPE_7234 are exactly identical!
WARNING: Sequences tr_A0A2I3S9H1_A0A2I3S9H1_PANTR_9598 and tr_A0A2R9B4Q7_A0A2R9B4Q7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3TU62_A0A2I3TU62_PANTR_9598 and tr_A0A2R9ATN9_A0A2R9ATN9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F6Q1Y5_F6Q1Y5_ORNAN_9258 and tr_F7ECT5_F7ECT5_MONDO_13616 are exactly identical!
WARNING: Sequences tr_F6Q1Y5_F6Q1Y5_ORNAN_9258 and tr_G3WN13_G3WN13_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F7BT39_F7BT39_MONDO_13616 and tr_G3VQW0_G3VQW0_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F6UKP1_F6UKP1_HORSE_9796 and tr_L5KL67_L5KL67_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_B0XFF9_B0XFF9_CULQU_7176 and tr_Q7PYH8_Q7PYH8_ANOGA_7165 are exactly identical!
WARNING: Sequences tr_B0XFF9_B0XFF9_CULQU_7176 and tr_A0A084VS43_A0A084VS43_ANOSI_74873 are exactly identical!
WARNING: Sequences tr_W5PWW5_W5PWW5_SHEEP_9940 and tr_H0XN25_H0XN25_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_D3ZCH1_D3ZCH1_RAT_10116 and tr_A0A3Q0D2G6_A0A3Q0D2G6_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A3B5QCJ5_A0A3B5QCJ5_XIPMA_8083 and tr_A0A087XIM4_A0A087XIM4_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M3ZX80_M3ZX80_XIPMA_8083 and tr_A0A087XNK8_A0A087XNK8_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A087ZUZ6_A0A087ZUZ6_APIME_7460 and tr_A0A2A3E7F5_A0A2A3E7F5_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NI06_A0A158NI06_ATTCE_12957 and tr_A0A195AX32_A0A195AX32_9HYME_520822 are exactly identical!
WARNING: Sequences sp_Q96HA7_TONSL_HUMAN_9606 and tr_A0A096NE10_A0A096NE10_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q96HA7_TONSL_HUMAN_9606 and tr_A0A0D9R7L8_A0A0D9R7L8_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q96HA7_TONSL_HUMAN_9606 and tr_A0A2K5MJU8_A0A2K5MJU8_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q96HA7_TONSL_HUMAN_9606 and tr_A0A2K6CM78_A0A2K6CM78_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q96HA7_TONSL_HUMAN_9606 and tr_A0A2K6A5A3_A0A2K6A5A3_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A158Q1Y0_A0A158Q1Y0_BRUMA_6279 and tr_A0A0N4TWC1_A0A0N4TWC1_BRUPA_6280 are exactly identical!
WARNING: Sequences tr_A0A158Q1Y0_A0A158Q1Y0_BRUMA_6279 and tr_A0A0R3QLR2_A0A0R3QLR2_9BILA_42155 are exactly identical!
WARNING: Sequences tr_A0A1D5QZ92_A0A1D5QZ92_MACMU_9544 and tr_A0A2I3LK46_A0A2I3LK46_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5QZ92_A0A1D5QZ92_MACMU_9544 and tr_A0A0D9R9F2_A0A0D9R9F2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5QZ92_A0A1D5QZ92_MACMU_9544 and tr_A0A2K5M286_A0A2K5M286_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5QZ92_A0A1D5QZ92_MACMU_9544 and tr_A0A2K6DZ99_A0A2K6DZ99_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5QZ92_A0A1D5QZ92_MACMU_9544 and tr_A0A2K5YL66_A0A2K5YL66_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_G7PLD1_G7PLD1_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_A0A096MZC3_A0A096MZC3_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_A0A0D9RAF5_A0A0D9RAF5_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_A0A2K5NU25_A0A2K5NU25_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_A0A2K6DQ03_A0A2K6DQ03_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_A0A2K5YGX9_A0A2K5YGX9_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G5API6_G5API6_HETGA_10181 and tr_A0A091DIB2_A0A091DIB2_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G5API6_G5API6_HETGA_10181 and tr_A0A2Y9R1Q1_A0A2Y9R1Q1_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_G5BU37_G5BU37_HETGA_10181 and tr_A0A091D9R8_A0A091D9R8_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G5C060_G5C060_HETGA_10181 and tr_A0A091D7L0_A0A091D7L0_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G5C060_G5C060_HETGA_10181 and tr_A0A2Y9IRM7_A0A2Y9IRM7_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G3T8T5_G3T8T5_LOXAF_9785 and tr_A0A2Y9DRP9_A0A2Y9DRP9_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_U3JKN7_U3JKN7_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_U3I7N9_U3I7N9_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A0Q3MCI5_A0A0Q3MCI5_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A091EZN0_A0A091EZN0_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A091JL90_A0A091JL90_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A093SN16_A0A093SN16_9PASS_328815 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A091USF9_A0A091USF9_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A087QQ48_A0A087QQ48_APTFO_9233 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A093HTG7_A0A093HTG7_STRCA_441894 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A091XEA7_A0A091XEA7_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A099YXH9_A0A099YXH9_TINGU_94827 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A091G969_A0A091G969_9AVES_55661 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A0A0ASG2_A0A0A0ASG2_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A2I0LLX1_A0A2I0LLX1_COLLI_8932 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A093GU87_A0A093GU87_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A091HIF2_A0A091HIF2_CALAN_9244 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A1V4K1J4_A0A1V4K1J4_PATFA_372326 are exactly identical!
WARNING: Sequences tr_H0ZBW2_H0ZBW2_TAEGU_59729 and tr_A0A218USD3_A0A218USD3_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H0ZHU8_H0ZHU8_TAEGU_59729 and tr_U3JV49_U3JV49_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0ZHU8_H0ZHU8_TAEGU_59729 and tr_A0A091HQP6_A0A091HQP6_CALAN_9244 are exactly identical!
WARNING: Sequences tr_H0ZHU8_H0ZHU8_TAEGU_59729 and tr_A0A218UTT8_A0A218UTT8_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1B8Y4C9_A0A1B8Y4C9_XENTR_8364 and tr_F7DQ36_F7DQ36_XENTR_8364 are exactly identical!
WARNING: Sequences tr_F7HHX0_F7HHX0_CALJA_9483 and tr_E1BAT5_E1BAT5_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_F7HHX0_F7HHX0_CALJA_9483 and tr_A0A2Y9SQC5_A0A2Y9SQC5_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A286ZRF8_A0A286ZRF8_PIG_9823 and tr_A0A1S3A963_A0A1S3A963_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_A0A286ZRF8_A0A286ZRF8_PIG_9823 and tr_A0A2Y9P8I3_A0A2Y9P8I3_DELLE_9749 are exactly identical!
WARNING: Sequences tr_Q16EZ1_Q16EZ1_AEDAE_7159 and tr_Q16GN0_Q16GN0_AEDAE_7159 are exactly identical!
WARNING: Sequences tr_G1LAW6_G1LAW6_AILME_9646 and tr_A0A384C1W2_A0A384C1W2_URSMA_29073 are exactly identical!
WARNING: Sequences tr_B3RVJ8_B3RVJ8_TRIAD_10228 and tr_A0A369SJE8_A0A369SJE8_9METZ_287889 are exactly identical!
WARNING: Sequences tr_G8F452_G8F452_MACFA_9541 and tr_A0A2I3LNF3_A0A2I3LNF3_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G8F452_G8F452_MACFA_9541 and tr_A0A2K6D3Z7_A0A2K6D3Z7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G8F452_G8F452_MACFA_9541 and tr_A0A2K5ZFE7_A0A2K5ZFE7_MANLE_9568 are exactly identical!
WARNING: Sequences sp_A6QR20_SLF1_BOVIN_9913 and tr_F1MM85_F1MM85_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_Q2KI59_Q2KI59_BOVIN_9913 and tr_A0A2U3V7R4_A0A2U3V7R4_TURTR_9739 are exactly identical!
WARNING: Sequences tr_V2XAL4_V2XAL4_MONRO_1381753 and tr_A0A0W0FS22_A0A0W0FS22_9AGAR_221103 are exactly identical!
WARNING: Sequences tr_A0A044SQ63_A0A044SQ63_ONCVO_6282 and tr_A0A182E2S5_A0A182E2S5_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A2K6W5C8_A0A2K6W5C8_ONCVO_6282 and tr_A0A182EKF8_A0A182EKF8_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A087Y326_A0A087Y326_POEFO_48698 and tr_A0A2I4CK98_A0A2I4CK98_9TELE_52670 are exactly identical!
WARNING: Sequences tr_A0A0A1NKR3_A0A0A1NKR3_9FUNG_58291 and tr_A0A0A1PGA0_A0A0A1PGA0_9FUNG_58291 are exactly identical!
WARNING: Sequences tr_A0A0A1NKR3_A0A0A1NKR3_9FUNG_58291 and tr_A0A367K1J0_A0A367K1J0_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0A1NKR3_A0A0A1NKR3_9FUNG_58291 and tr_A0A367KCF0_A0A367KCF0_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0A1NLI6_A0A0A1NLI6_9FUNG_58291 and tr_A0A0A1P5J4_A0A0A1P5J4_9FUNG_58291 are exactly identical!
WARNING: Sequences tr_A0A0A1NLI6_A0A0A1NLI6_9FUNG_58291 and tr_A0A367KBE4_A0A367KBE4_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A151P4R3_A0A151P4R3_ALLMI_8496 and tr_A0A1U8D7W8_A0A1U8D7W8_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151P7T8_A0A151P7T8_ALLMI_8496 and tr_A0A3Q0GYK3_A0A3Q0GYK3_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A087RCE0_A0A087RCE0_APTFO_9233 and tr_A0A0A0AX73_A0A0A0AX73_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A087RCE0_A0A087RCE0_APTFO_9233 and tr_A0A2I0LLN1_A0A2I0LLN1_COLLI_8932 are exactly identical!
WARNING: Sequences tr_A0A0L7RJL3_A0A0L7RJL3_9HYME_597456 and tr_A0A2A3EDN9_A0A2A3EDN9_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A0V1MB97_A0A0V1MB97_9BILA_268474 and tr_A0A0V1H603_A0A0V1H603_9BILA_268475 are exactly identical!
WARNING: Sequences tr_A0A1S3GZA8_A0A1S3GZA8_LINUN_7574 and tr_A0A1S3IFL1_A0A1S3IFL1_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3HJF7_A0A1S3HJF7_LINUN_7574 and tr_A0A1S3HUI3_A0A1S3HUI3_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3PTD8_A0A1S3PTD8_SALSA_8030 and tr_A0A060XMM1_A0A060XMM1_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3PTD8_A0A1S3PTD8_SALSA_8030 and tr_A0A060XVQ7_A0A060XVQ7_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1R1WZD7_A0A1R1WZD7_9FUNG_133412 and tr_A0A1R1YAA1_A0A1R1YAA1_9FUNG_133412 are exactly identical!
WARNING: Sequences tr_A0A2D0PL67_A0A2D0PL67_ICTPU_7998 and tr_A0A2D0PLA3_A0A2D0PLA3_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0PL67_A0A2D0PL67_ICTPU_7998 and tr_A0A2D0PMY1_A0A2D0PMY1_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0Q5P0_A0A2D0Q5P0_ICTPU_7998 and tr_A0A2D0Q6U2_A0A2D0Q6U2_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2U4AWT0_A0A2U4AWT0_TURTR_9739 and tr_A0A2Y9PND6_A0A2Y9PND6_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4AWT0_A0A2U4AWT0_TURTR_9739 and tr_A0A2Y9EL96_A0A2Y9EL96_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2U4AWT0_A0A2U4AWT0_TURTR_9739 and tr_A0A384BCS7_A0A384BCS7_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A2U4BMU3_A0A2U4BMU3_TURTR_9739 and tr_A0A2Y9MM33_A0A2Y9MM33_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4CM94_A0A2U4CM94_TURTR_9739 and tr_A0A2Y9M0U1_A0A2Y9M0U1_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4CM94_A0A2U4CM94_TURTR_9739 and tr_A0A383YVJ9_A0A383YVJ9_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 234

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7Z5/3_mltree/Q8N7Z5.raxml.reduced.phy

Alignment comprises 1 partitions and 119 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 119 / 119
Gaps: 6.09 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7Z5/3_mltree/Q8N7Z5.raxml.rba

Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 994 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 119 / 9520
[00:00:00] Data distribution: max. searches per worker: 10

Starting ML tree search with 20 distinct starting trees

[00:00:00 -209383.274941] Initial branch length optimization
[00:00:02 -174673.078676] Model parameter optimization (eps = 10.000000)
[00:00:28 -174455.034391] AUTODETECT spr round 1 (radius: 5)
[00:02:21 -121532.464437] AUTODETECT spr round 2 (radius: 10)
[00:04:25 -93011.706647] AUTODETECT spr round 3 (radius: 15)
[00:06:42 -76492.176213] AUTODETECT spr round 4 (radius: 20)
[00:08:59 -71995.719790] AUTODETECT spr round 5 (radius: 25)
[00:11:45 -68350.300239] SPR radius for FAST iterations: 25 (autodetect)
[00:11:45 -68350.300239] Model parameter optimization (eps = 3.000000)
[00:12:05 -68312.458398] FAST spr round 1 (radius: 25)
[00:14:20 -59564.198527] FAST spr round 2 (radius: 25)
[00:16:05 -58647.323237] FAST spr round 3 (radius: 25)
[00:17:41 -58454.719417] FAST spr round 4 (radius: 25)
[00:19:11 -58435.038870] FAST spr round 5 (radius: 25)
[00:20:31 -58432.007148] FAST spr round 6 (radius: 25)
[00:21:49 -58432.006796] Model parameter optimization (eps = 1.000000)
[00:21:59 -58430.128685] SLOW spr round 1 (radius: 5)
[00:23:34 -58421.123464] SLOW spr round 2 (radius: 5)
[00:25:10 -58417.814766] SLOW spr round 3 (radius: 5)
[00:26:41 -58417.813582] SLOW spr round 4 (radius: 10)
[00:28:19 -58416.746240] SLOW spr round 5 (radius: 5)
[00:30:14 -58416.443476] SLOW spr round 6 (radius: 5)
[00:31:57 -58416.443100] SLOW spr round 7 (radius: 10)
[00:33:37 -58416.442926] SLOW spr round 8 (radius: 15)
[00:35:56 -58412.498658] SLOW spr round 9 (radius: 5)
[00:37:54 -58412.498284] SLOW spr round 10 (radius: 10)
[00:39:46 -58412.497966] SLOW spr round 11 (radius: 15)
[00:42:00 -58412.497667] SLOW spr round 12 (radius: 20)
[00:45:23 -58412.146010] SLOW spr round 13 (radius: 5)
[00:47:26 -58408.092154] SLOW spr round 14 (radius: 5)
[00:49:15 -58408.091790] SLOW spr round 15 (radius: 10)
[00:50:59 -58407.703149] SLOW spr round 16 (radius: 5)
[00:52:51 -58407.698092] SLOW spr round 17 (radius: 10)
[00:54:37 -58407.415172] SLOW spr round 18 (radius: 5)
[00:56:29 -58407.371457] SLOW spr round 19 (radius: 10)
[00:58:14 -58407.371320] SLOW spr round 20 (radius: 15)
[01:00:29 -58407.371189] SLOW spr round 21 (radius: 20)
[01:03:50 -58407.371059] SLOW spr round 22 (radius: 25)
[01:07:52 -58407.370929] Model parameter optimization (eps = 0.100000)

[01:07:56] [worker #0] ML tree search #1, logLikelihood: -58407.341300

[01:07:56 -209389.006075] Initial branch length optimization
[01:07:59 -176263.234655] Model parameter optimization (eps = 10.000000)
[01:08:23 -176055.280987] AUTODETECT spr round 1 (radius: 5)
[01:10:10 -125383.007614] AUTODETECT spr round 2 (radius: 10)
[01:12:08 -92953.071405] AUTODETECT spr round 3 (radius: 15)
[01:14:12 -79699.554107] AUTODETECT spr round 4 (radius: 20)
[01:16:26 -69892.470627] AUTODETECT spr round 5 (radius: 25)
[01:19:11 -67384.929981] SPR radius for FAST iterations: 25 (autodetect)
[01:19:11 -67384.929981] Model parameter optimization (eps = 3.000000)
[01:19:31 -67314.302172] FAST spr round 1 (radius: 25)
[01:21:53 -59141.473406] FAST spr round 2 (radius: 25)
[01:23:44 -58565.722669] FAST spr round 3 (radius: 25)
[01:25:21 -58477.036665] FAST spr round 4 (radius: 25)
[01:26:33] [worker #1] ML tree search #2, logLikelihood: -58427.554381
[01:26:52 -58446.516575] FAST spr round 5 (radius: 25)
[01:28:12 -58443.946870] FAST spr round 6 (radius: 25)
[01:29:29 -58443.898801] Model parameter optimization (eps = 1.000000)
[01:29:37 -58439.526751] SLOW spr round 1 (radius: 5)
[01:31:12 -58422.525892] SLOW spr round 2 (radius: 5)
[01:32:48 -58417.650828] SLOW spr round 3 (radius: 5)
[01:34:22 -58417.645664] SLOW spr round 4 (radius: 10)
[01:36:02 -58417.643090] SLOW spr round 5 (radius: 15)
[01:38:26 -58417.641540] SLOW spr round 6 (radius: 20)
[01:41:48 -58416.848162] SLOW spr round 7 (radius: 5)
[01:43:52 -58416.847081] SLOW spr round 8 (radius: 10)
[01:45:47 -58414.668216] SLOW spr round 9 (radius: 5)
[01:47:43 -58409.869048] SLOW spr round 10 (radius: 5)
[01:49:28 -58407.124156] SLOW spr round 11 (radius: 5)
[01:51:04 -58407.123664] SLOW spr round 12 (radius: 10)
[01:52:42 -58407.123546] SLOW spr round 13 (radius: 15)
[01:55:01 -58407.123465] SLOW spr round 14 (radius: 20)
[01:58:21 -58407.123392] SLOW spr round 15 (radius: 25)
[02:02:30 -58407.123322] Model parameter optimization (eps = 0.100000)

[02:02:36] [worker #0] ML tree search #3, logLikelihood: -58407.079966

[02:02:36 -209955.537689] Initial branch length optimization
[02:02:40 -175823.069314] Model parameter optimization (eps = 10.000000)
[02:03:04 -175459.627410] AUTODETECT spr round 1 (radius: 5)
[02:04:56 -125440.621179] AUTODETECT spr round 2 (radius: 10)
[02:07:01 -95016.924408] AUTODETECT spr round 3 (radius: 15)
[02:09:07 -76773.845668] AUTODETECT spr round 4 (radius: 20)
[02:11:34 -68094.067457] AUTODETECT spr round 5 (radius: 25)
[02:14:33 -66565.810664] SPR radius for FAST iterations: 25 (autodetect)
[02:14:33 -66565.810664] Model parameter optimization (eps = 3.000000)
[02:15:00 -66474.004728] FAST spr round 1 (radius: 25)
[02:17:23 -58983.623726] FAST spr round 2 (radius: 25)
[02:19:15 -58515.183492] FAST spr round 3 (radius: 25)
[02:20:51 -58438.226857] FAST spr round 4 (radius: 25)
[02:22:18 -58418.495511] FAST spr round 5 (radius: 25)
[02:23:40 -58414.762444] FAST spr round 6 (radius: 25)
[02:24:59 -58412.838108] FAST spr round 7 (radius: 25)
[02:26:17 -58412.837606] Model parameter optimization (eps = 1.000000)
[02:26:28 -58406.838612] SLOW spr round 1 (radius: 5)
[02:28:03 -58389.546470] SLOW spr round 2 (radius: 5)
[02:29:38 -58385.389425] SLOW spr round 3 (radius: 5)
[02:31:11 -58385.388424] SLOW spr round 4 (radius: 10)
[02:32:49 -58384.167788] SLOW spr round 5 (radius: 5)
[02:34:45 -58384.139107] SLOW spr round 6 (radius: 10)
[02:36:31 -58384.138334] SLOW spr round 7 (radius: 15)
[02:37:19] [worker #1] ML tree search #4, logLikelihood: -58631.413090
[02:38:47 -58384.138171] SLOW spr round 8 (radius: 20)
[02:42:13 -58381.038596] SLOW spr round 9 (radius: 5)
[02:44:14 -58381.037192] SLOW spr round 10 (radius: 10)
[02:46:09 -58381.037025] SLOW spr round 11 (radius: 15)
[02:48:23 -58381.036968] SLOW spr round 12 (radius: 20)
[02:51:51 -58381.036939] SLOW spr round 13 (radius: 25)
[02:56:04 -58381.036921] Model parameter optimization (eps = 0.100000)

[02:56:08] [worker #0] ML tree search #5, logLikelihood: -58380.966983

[02:56:08 -210074.534374] Initial branch length optimization
[02:56:11 -176047.022335] Model parameter optimization (eps = 10.000000)
[02:56:38 -175661.911568] AUTODETECT spr round 1 (radius: 5)
[02:58:31 -124539.754899] AUTODETECT spr round 2 (radius: 10)
[03:00:36 -91890.885391] AUTODETECT spr round 3 (radius: 15)
[03:02:50 -80506.582516] AUTODETECT spr round 4 (radius: 20)
[03:05:17 -73312.586248] AUTODETECT spr round 5 (radius: 25)
[03:07:38 -68716.990808] SPR radius for FAST iterations: 25 (autodetect)
[03:07:38 -68716.990808] Model parameter optimization (eps = 3.000000)
[03:07:53 -68609.367042] FAST spr round 1 (radius: 25)
[03:10:06 -59357.578973] FAST spr round 2 (radius: 25)
[03:11:49 -58561.188777] FAST spr round 3 (radius: 25)
[03:13:17 -58518.021508] FAST spr round 4 (radius: 25)
[03:14:37 -58484.247092] FAST spr round 5 (radius: 25)
[03:15:51 -58483.564944] FAST spr round 6 (radius: 25)
[03:17:04 -58483.564267] Model parameter optimization (eps = 1.000000)
[03:17:10 -58482.872065] SLOW spr round 1 (radius: 5)
[03:18:39 -58477.595577] SLOW spr round 2 (radius: 5)
[03:20:07 -58477.584102] SLOW spr round 3 (radius: 10)
[03:21:43 -58470.051485] SLOW spr round 4 (radius: 5)
[03:23:35 -58462.658658] SLOW spr round 5 (radius: 5)
[03:25:14 -58462.618178] SLOW spr round 6 (radius: 10)
[03:26:49 -58462.617400] SLOW spr round 7 (radius: 15)
[03:29:02 -58462.115889] SLOW spr round 8 (radius: 5)
[03:30:54 -58462.112739] SLOW spr round 9 (radius: 10)
[03:32:38 -58462.111876] SLOW spr round 10 (radius: 15)
[03:34:46 -58462.111610] SLOW spr round 11 (radius: 20)
[03:37:14] [worker #1] ML tree search #6, logLikelihood: -58422.134983
[03:38:16 -58462.111504] SLOW spr round 12 (radius: 25)
[03:42:39 -58462.111446] Model parameter optimization (eps = 0.100000)

[03:42:45] [worker #0] ML tree search #7, logLikelihood: -58462.085910

[03:42:45 -210226.842130] Initial branch length optimization
[03:42:49 -176347.276775] Model parameter optimization (eps = 10.000000)
[03:43:13 -176101.515076] AUTODETECT spr round 1 (radius: 5)
[03:44:59 -125667.988859] AUTODETECT spr round 2 (radius: 10)
[03:46:56 -93550.183718] AUTODETECT spr round 3 (radius: 15)
[03:48:58 -74619.389508] AUTODETECT spr round 4 (radius: 20)
[03:51:08 -68791.577842] AUTODETECT spr round 5 (radius: 25)
[03:53:40 -66676.388811] SPR radius for FAST iterations: 25 (autodetect)
[03:53:40 -66676.388811] Model parameter optimization (eps = 3.000000)
[03:53:55 -66625.634161] FAST spr round 1 (radius: 25)
[03:56:13 -58961.644686] FAST spr round 2 (radius: 25)
[03:57:56 -58524.617029] FAST spr round 3 (radius: 25)
[03:59:25 -58479.547578] FAST spr round 4 (radius: 25)
[04:00:46 -58468.946904] FAST spr round 5 (radius: 25)
[04:02:01 -58468.943055] Model parameter optimization (eps = 1.000000)
[04:02:13 -58461.432737] SLOW spr round 1 (radius: 5)
[04:03:44 -58445.769568] SLOW spr round 2 (radius: 5)
[04:05:18 -58438.858013] SLOW spr round 3 (radius: 5)
[04:06:49 -58429.778018] SLOW spr round 4 (radius: 5)
[04:08:20 -58427.441569] SLOW spr round 5 (radius: 5)
[04:09:48 -58427.440570] SLOW spr round 6 (radius: 10)
[04:11:22 -58425.905941] SLOW spr round 7 (radius: 5)
[04:13:12 -58425.904195] SLOW spr round 8 (radius: 10)
[04:14:55 -58425.903936] SLOW spr round 9 (radius: 15)
[04:16:56 -58422.157535] SLOW spr round 10 (radius: 5)
[04:18:51 -58421.827627] SLOW spr round 11 (radius: 5)
[04:20:32 -58421.827076] SLOW spr round 12 (radius: 10)
[04:22:09 -58420.334430] SLOW spr round 13 (radius: 5)
[04:23:57 -58419.875358] SLOW spr round 14 (radius: 5)
[04:25:34 -58419.650690] SLOW spr round 15 (radius: 5)
[04:27:05 -58419.650498] SLOW spr round 16 (radius: 10)
[04:28:38 -58419.650480] SLOW spr round 17 (radius: 15)
[04:30:43 -58419.650478] SLOW spr round 18 (radius: 20)
[04:33:42 -58416.986929] SLOW spr round 19 (radius: 5)
[04:35:36 -58416.984871] SLOW spr round 20 (radius: 10)
[04:37:22 -58416.984348] SLOW spr round 21 (radius: 15)
[04:39:13] [worker #1] ML tree search #8, logLikelihood: -58421.714932
[04:39:22 -58416.984219] SLOW spr round 22 (radius: 20)
[04:42:27 -58416.984187] SLOW spr round 23 (radius: 25)
[04:46:21 -58416.984179] Model parameter optimization (eps = 0.100000)

[04:46:27] [worker #0] ML tree search #9, logLikelihood: -58416.506469

[04:46:27 -211251.925045] Initial branch length optimization
[04:46:30 -177077.160796] Model parameter optimization (eps = 10.000000)
[04:46:56 -176801.882258] AUTODETECT spr round 1 (radius: 5)
[04:48:45 -124255.047108] AUTODETECT spr round 2 (radius: 10)
[04:50:51 -93146.175090] AUTODETECT spr round 3 (radius: 15)
[04:52:57 -83384.781205] AUTODETECT spr round 4 (radius: 20)
[04:55:26 -76320.735417] AUTODETECT spr round 5 (radius: 25)
[04:58:09 -69070.189834] SPR radius for FAST iterations: 25 (autodetect)
[04:58:09 -69070.189834] Model parameter optimization (eps = 3.000000)
[04:58:28 -69025.873572] FAST spr round 1 (radius: 25)
[05:00:52 -59235.266399] FAST spr round 2 (radius: 25)
[05:02:37 -58586.434442] FAST spr round 3 (radius: 25)
[05:04:11 -58485.593450] FAST spr round 4 (radius: 25)
[05:05:36 -58454.602273] FAST spr round 5 (radius: 25)
[05:06:55 -58451.340513] FAST spr round 6 (radius: 25)
[05:08:09 -58450.971234] FAST spr round 7 (radius: 25)
[05:09:22 -58450.968954] Model parameter optimization (eps = 1.000000)
[05:09:30 -58445.905978] SLOW spr round 1 (radius: 5)
[05:11:00 -58433.773707] SLOW spr round 2 (radius: 5)
[05:12:30 -58430.104570] SLOW spr round 3 (radius: 5)
[05:14:00 -58429.454751] SLOW spr round 4 (radius: 5)
[05:15:30 -58429.454531] SLOW spr round 5 (radius: 10)
[05:17:07 -58428.941054] SLOW spr round 6 (radius: 5)
[05:18:59 -58428.236139] SLOW spr round 7 (radius: 5)
[05:20:39 -58428.235608] SLOW spr round 8 (radius: 10)
[05:22:17 -58424.427277] SLOW spr round 9 (radius: 5)
[05:24:08 -58422.763176] SLOW spr round 10 (radius: 5)
[05:25:51 -58421.663360] SLOW spr round 11 (radius: 5)
[05:27:27 -58420.088726] SLOW spr round 12 (radius: 5)
[05:28:58 -58420.088677] SLOW spr round 13 (radius: 10)
[05:30:35 -58419.362312] SLOW spr round 14 (radius: 5)
[05:32:26 -58419.361886] SLOW spr round 15 (radius: 10)
[05:34:07 -58419.361829] SLOW spr round 16 (radius: 15)
[05:36:15 -58419.361814] SLOW spr round 17 (radius: 20)
[05:39:39 -58419.361804] SLOW spr round 18 (radius: 25)
[05:43:45 -58419.361795] Model parameter optimization (eps = 0.100000)

[05:43:53] [worker #0] ML tree search #11, logLikelihood: -58419.160045

[05:43:53 -209874.094374] Initial branch length optimization
[05:43:56 -175864.725813] Model parameter optimization (eps = 10.000000)
[05:44:23 -175657.907832] AUTODETECT spr round 1 (radius: 5)
[05:46:10 -126262.053678] AUTODETECT spr round 2 (radius: 10)
[05:48:08 -90475.972901] AUTODETECT spr round 3 (radius: 15)
[05:50:15 -74045.558413] AUTODETECT spr round 4 (radius: 20)
[05:52:31 -67818.861731] AUTODETECT spr round 5 (radius: 25)
[05:53:23] [worker #1] ML tree search #10, logLikelihood: -58429.327003
[05:55:02 -65605.864455] SPR radius for FAST iterations: 25 (autodetect)
[05:55:02 -65605.864455] Model parameter optimization (eps = 3.000000)
[05:55:18 -65541.925276] FAST spr round 1 (radius: 25)
[05:57:31 -59127.636884] FAST spr round 2 (radius: 25)
[05:59:20 -58570.273874] FAST spr round 3 (radius: 25)
[06:00:54 -58514.474971] FAST spr round 4 (radius: 25)
[06:02:18 -58506.349697] FAST spr round 5 (radius: 25)
[06:03:39 -58504.774350] FAST spr round 6 (radius: 25)
[06:04:58 -58501.961734] FAST spr round 7 (radius: 25)
[06:06:15 -58501.961681] Model parameter optimization (eps = 1.000000)
[06:06:26 -58495.659394] SLOW spr round 1 (radius: 5)
[06:08:02 -58473.962550] SLOW spr round 2 (radius: 5)
[06:09:39 -58470.436408] SLOW spr round 3 (radius: 5)
[06:11:15 -58467.583523] SLOW spr round 4 (radius: 5)
[06:12:51 -58465.401592] SLOW spr round 5 (radius: 5)
[06:14:24 -58465.294092] SLOW spr round 6 (radius: 5)
[06:15:57 -58465.293955] SLOW spr round 7 (radius: 10)
[06:17:34 -58463.791635] SLOW spr round 8 (radius: 5)
[06:19:27 -58463.293223] SLOW spr round 9 (radius: 5)
[06:21:08 -58463.293203] SLOW spr round 10 (radius: 10)
[06:22:48 -58463.293186] SLOW spr round 11 (radius: 15)
[06:25:01 -58463.293173] SLOW spr round 12 (radius: 20)
[06:28:05 -58459.777493] SLOW spr round 13 (radius: 5)
[06:30:01 -58459.777441] SLOW spr round 14 (radius: 10)
[06:31:51 -58459.777440] SLOW spr round 15 (radius: 15)
[06:33:55 -58459.777437] SLOW spr round 16 (radius: 20)
[06:36:59 -58459.777437] SLOW spr round 17 (radius: 25)
[06:40:49 -58459.777437] Model parameter optimization (eps = 0.100000)

[06:40:53] [worker #0] ML tree search #13, logLikelihood: -58459.717540

[06:40:54 -208966.808809] Initial branch length optimization
[06:40:56 -174303.574069] Model parameter optimization (eps = 10.000000)
[06:41:22 -174033.592252] AUTODETECT spr round 1 (radius: 5)
[06:43:08 -122253.137817] AUTODETECT spr round 2 (radius: 10)
[06:45:04 -92380.466766] AUTODETECT spr round 3 (radius: 15)
[06:47:10 -75985.440398] AUTODETECT spr round 4 (radius: 20)
[06:49:27 -67447.371945] AUTODETECT spr round 5 (radius: 25)
[06:51:52 -66261.604548] SPR radius for FAST iterations: 25 (autodetect)
[06:51:52 -66261.604548] Model parameter optimization (eps = 3.000000)
[06:52:09 -66223.768199] FAST spr round 1 (radius: 25)
[06:54:27 -58780.666084] FAST spr round 2 (radius: 25)
[06:56:06 -58498.565238] FAST spr round 3 (radius: 25)
[06:57:34 -58461.020695] FAST spr round 4 (radius: 25)
[06:58:56 -58453.415063] FAST spr round 5 (radius: 25)
[07:00:13 -58448.864627] FAST spr round 6 (radius: 25)
[07:00:53] [worker #1] ML tree search #12, logLikelihood: -58421.590148
[07:01:29 -58448.864505] Model parameter optimization (eps = 1.000000)
[07:01:40 -58436.234069] SLOW spr round 1 (radius: 5)
[07:03:11 -58424.615674] SLOW spr round 2 (radius: 5)
[07:04:43 -58423.961027] SLOW spr round 3 (radius: 5)
[07:06:16 -58423.960021] SLOW spr round 4 (radius: 10)
[07:07:50 -58423.561364] SLOW spr round 5 (radius: 5)
[07:09:39 -58423.561326] SLOW spr round 6 (radius: 10)
[07:11:21 -58423.561272] SLOW spr round 7 (radius: 15)
[07:13:33 -58423.561196] SLOW spr round 8 (radius: 20)
[07:16:48 -58423.348396] SLOW spr round 9 (radius: 5)
[07:18:45 -58423.348274] SLOW spr round 10 (radius: 10)
[07:20:32 -58423.348271] SLOW spr round 11 (radius: 15)
[07:22:40 -58423.348268] SLOW spr round 12 (radius: 20)
[07:25:55 -58423.348264] SLOW spr round 13 (radius: 25)
[07:29:53 -58423.348261] Model parameter optimization (eps = 0.100000)

[07:29:58] [worker #0] ML tree search #15, logLikelihood: -58423.338549

[07:29:58 -207971.827125] Initial branch length optimization
[07:30:01 -174313.525277] Model parameter optimization (eps = 10.000000)
[07:30:35 -174119.466269] AUTODETECT spr round 1 (radius: 5)
[07:32:23 -121601.905195] AUTODETECT spr round 2 (radius: 10)
[07:34:19 -91060.233331] AUTODETECT spr round 3 (radius: 15)
[07:36:27 -78215.383601] AUTODETECT spr round 4 (radius: 20)
[07:39:02 -71063.470318] AUTODETECT spr round 5 (radius: 25)
[07:41:44 -68123.240824] SPR radius for FAST iterations: 25 (autodetect)
[07:41:44 -68123.240824] Model parameter optimization (eps = 3.000000)
[07:42:07 -68068.478763] FAST spr round 1 (radius: 25)
[07:44:18 -59111.488096] FAST spr round 2 (radius: 25)
[07:45:55 -58550.586592] FAST spr round 3 (radius: 25)
[07:47:25 -58498.957018] FAST spr round 4 (radius: 25)
[07:48:46 -58486.101727] FAST spr round 5 (radius: 25)
[07:50:03 -58484.320030] FAST spr round 6 (radius: 25)
[07:51:21 -58472.508123] FAST spr round 7 (radius: 25)
[07:52:36 -58470.135009] FAST spr round 8 (radius: 25)
[07:53:51 -58468.215218] FAST spr round 9 (radius: 25)
[07:55:06 -58466.953705] FAST spr round 10 (radius: 25)
[07:56:20 -58462.031245] FAST spr round 11 (radius: 25)
[07:57:34 -58460.308758] FAST spr round 12 (radius: 25)
[07:58:48 -58460.308488] Model parameter optimization (eps = 1.000000)
[07:59:03 -58456.685272] SLOW spr round 1 (radius: 5)
[08:00:31 -58446.199838] SLOW spr round 2 (radius: 5)
[08:02:01 -58444.415583] SLOW spr round 3 (radius: 5)
[08:03:30 -58444.413419] SLOW spr round 4 (radius: 10)
[08:05:05 -58444.413066] SLOW spr round 5 (radius: 15)
[08:06:28] [worker #1] ML tree search #14, logLikelihood: -58431.260548
[08:07:21 -58440.608514] SLOW spr round 6 (radius: 5)
[08:09:19 -58438.155563] SLOW spr round 7 (radius: 5)
[08:11:05 -58433.250190] SLOW spr round 8 (radius: 5)
[08:12:40 -58433.249227] SLOW spr round 9 (radius: 10)
[08:14:20 -58424.791663] SLOW spr round 10 (radius: 5)
[08:16:11 -58421.735355] SLOW spr round 11 (radius: 5)
[08:17:49 -58421.732464] SLOW spr round 12 (radius: 10)
[08:19:25 -58421.731885] SLOW spr round 13 (radius: 15)
[08:21:34 -58420.800365] SLOW spr round 14 (radius: 5)
[08:23:28 -58420.288791] SLOW spr round 15 (radius: 5)
[08:25:11 -58419.720148] SLOW spr round 16 (radius: 5)
[08:26:44 -58419.720003] SLOW spr round 17 (radius: 10)
[08:28:19 -58419.719875] SLOW spr round 18 (radius: 15)
[08:30:29 -58419.719757] SLOW spr round 19 (radius: 20)
[08:33:40 -58416.282140] SLOW spr round 20 (radius: 5)
[08:35:37 -58413.506932] SLOW spr round 21 (radius: 5)
[08:37:21 -58413.506818] SLOW spr round 22 (radius: 10)
[08:39:01 -58410.885402] SLOW spr round 23 (radius: 5)
[08:40:53 -58399.452373] SLOW spr round 24 (radius: 5)
[08:42:34 -58398.862722] SLOW spr round 25 (radius: 5)
[08:44:05 -58398.862301] SLOW spr round 26 (radius: 10)
[08:45:39 -58398.862276] SLOW spr round 27 (radius: 15)
[08:47:48 -58398.535418] SLOW spr round 28 (radius: 5)
[08:49:41 -58398.534942] SLOW spr round 29 (radius: 10)
[08:51:26 -58398.534933] SLOW spr round 30 (radius: 15)
[08:53:31 -58398.534930] SLOW spr round 31 (radius: 20)
[08:56:44 -58398.534928] SLOW spr round 32 (radius: 25)
[09:00:48 -58398.534927] Model parameter optimization (eps = 0.100000)

[09:00:54] [worker #0] ML tree search #17, logLikelihood: -58398.252339

[09:00:54 -210733.518375] Initial branch length optimization
[09:00:57 -177119.182536] Model parameter optimization (eps = 10.000000)
[09:01:25 -176809.118924] AUTODETECT spr round 1 (radius: 5)
[09:03:19 -125995.945364] AUTODETECT spr round 2 (radius: 10)
[09:05:28 -93256.075568] AUTODETECT spr round 3 (radius: 15)
[09:07:41 -80737.018014] AUTODETECT spr round 4 (radius: 20)
[09:10:19 -73540.192400] AUTODETECT spr round 5 (radius: 25)
[09:10:39] [worker #1] ML tree search #16, logLikelihood: -58420.288200
[09:13:11 -68731.519936] SPR radius for FAST iterations: 25 (autodetect)
[09:13:11 -68731.519936] Model parameter optimization (eps = 3.000000)
[09:13:27 -68633.034680] FAST spr round 1 (radius: 25)
[09:15:43 -59163.832925] FAST spr round 2 (radius: 25)
[09:17:28 -58580.599618] FAST spr round 3 (radius: 25)
[09:18:59 -58479.633452] FAST spr round 4 (radius: 25)
[09:20:24 -58460.831186] FAST spr round 5 (radius: 25)
[09:21:41 -58452.303209] FAST spr round 6 (radius: 25)
[09:22:56 -58448.068249] FAST spr round 7 (radius: 25)
[09:24:10 -58448.066401] Model parameter optimization (eps = 1.000000)
[09:24:19 -58438.915054] SLOW spr round 1 (radius: 5)
[09:25:49 -58420.971930] SLOW spr round 2 (radius: 5)
[09:27:21 -58409.633722] SLOW spr round 3 (radius: 5)
[09:28:52 -58404.745126] SLOW spr round 4 (radius: 5)
[09:30:22 -58403.602396] SLOW spr round 5 (radius: 5)
[09:31:51 -58403.601435] SLOW spr round 6 (radius: 10)
[09:33:25 -58400.219070] SLOW spr round 7 (radius: 5)
[09:35:17 -58399.400635] SLOW spr round 8 (radius: 5)
[09:36:57 -58399.386081] SLOW spr round 9 (radius: 10)
[09:38:35 -58399.384566] SLOW spr round 10 (radius: 15)
[09:40:46 -58399.384346] SLOW spr round 11 (radius: 20)
[09:43:48 -58399.384254] SLOW spr round 12 (radius: 25)
[09:47:40 -58399.384186] Model parameter optimization (eps = 0.100000)

[09:47:46] [worker #0] ML tree search #19, logLikelihood: -58399.324773

[10:00:48] [worker #1] ML tree search #18, logLikelihood: -58390.241206
[11:11:30] [worker #1] ML tree search #20, logLikelihood: -58441.982333

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.142534,0.322163) (0.210164,0.425852) (0.392908,0.974453) (0.254394,1.893567) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -58380.966983

AIC score: 120743.933966 / AICc score: 8052887.933966 / BIC score: 126277.168840
Free parameters (model + branch lengths): 1991

WARNING: Number of free parameters (K=1991) is larger than alignment size (n=119).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 316 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7Z5/3_mltree/Q8N7Z5.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7Z5/3_mltree/Q8N7Z5.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7Z5/3_mltree/Q8N7Z5.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7Z5/3_mltree/Q8N7Z5.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7Z5/3_mltree/Q8N7Z5.raxml.log

Analysis started: 04-Jul-2021 08:01:47 / finished: 04-Jul-2021 19:13:18

Elapsed time: 40290.457 seconds

Consumed energy: 3024.476 Wh (= 15 km in an electric car, or 76 km with an e-scooter!)