RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 03-Jul-2021 22:34:02 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7X1/2_msa/Q8N7X1_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7X1/3_mltree/Q8N7X1 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7X1/2_msa/Q8N7X1_trimmed_msa.fasta [00:00:00] Loaded alignment with 1000 taxa and 77 sites WARNING: Sequences tr_V7B910_V7B910_PHAVU_3885 and tr_A0A0L9TGW7_A0A0L9TGW7_PHAAN_3914 are exactly identical! WARNING: Sequences tr_V7B910_V7B910_PHAVU_3885 and tr_A0A1S3UFX5_A0A1S3UFX5_VIGRR_3916 are exactly identical! WARNING: Sequences tr_V7BKS9_V7BKS9_PHAVU_3885 and tr_A0A0L9TCV0_A0A0L9TCV0_PHAAN_3914 are exactly identical! WARNING: Sequences tr_V7BKS9_V7BKS9_PHAVU_3885 and tr_A0A151S4W8_A0A151S4W8_CAJCA_3821 are exactly identical! WARNING: Sequences tr_V7BKS9_V7BKS9_PHAVU_3885 and tr_A0A1S3VKR5_A0A1S3VKR5_VIGRR_3916 are exactly identical! WARNING: Sequences tr_E9FQS6_E9FQS6_DAPPU_6669 and tr_A0A164PTE8_A0A164PTE8_9CRUS_35525 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and sp_Q9WV02_RBMX_MOUSE_10090 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_G9KKJ5_G9KKJ5_MUSPF_9669 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2I3HU52_A0A2I3HU52_NOMLE_61853 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_G1PMA0_G1PMA0_MYOLU_59463 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_G1PXW1_G1PXW1_MYOLU_59463 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_G1QG50_G1QG50_MYOLU_59463 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_G3H6K1_G3H6K1_CRIGR_10029 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2I2YFH7_A0A2I2YFH7_GORGO_9595 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_H2PWY1_H2PWY1_PONAB_9601 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_G1MWZ1_G1MWZ1_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_H9GFE5_H9GFE5_ANOCA_28377 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_G1TJ15_G1TJ15_RABIT_9986 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_G1U5N7_G1U5N7_RABIT_9986 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_E2R068_E2R068_CANLF_9615 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and sp_A5A6M3_RBMX_PANTR_9598 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_F6RAJ0_F6RAJ0_ORNAN_9258 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_F6XJB9_F6XJB9_HORSE_9796 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_W5PMJ5_W5PMJ5_SHEEP_9940 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and sp_Q4V898_RBMX_RAT_10116 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_I3M7G6_I3M7G6_ICTTR_43179 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_H0VKT5_H0VKT5_CAVPO_10141 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and sp_P38159_RBMX_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A1D5RBE4_A0A1D5RBE4_MACMU_9544 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_G5CAU0_G5CAU0_HETGA_10181 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_K7FX00_K7FX00_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_G3SWH5_G3SWH5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_H0YV81_H0YV81_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2R8MXC4_A0A2R8MXC4_CALJA_9483 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_F7HGT3_F7HGT3_CALJA_9483 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_F1RQ90_F1RQ90_PIG_9823 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_D2HD91_D2HD91_AILME_9646 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_G7Q1T6_G7Q1T6_MACFA_9541 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_D3JUI8_D3JUI8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_L5JS34_L5JS34_PTEAL_9402 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_M3W2U4_M3W2U4_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_U3JMB8_U3JMB8_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_U3IUN7_U3IUN7_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A096NE03_A0A096NE03_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A091DIR2_A0A091DIR2_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A091DYV3_A0A091DYV3_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A151N851_A0A151N851_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A091E6I7_A0A091E6I7_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A091IQU7_A0A091IQU7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A093QCI8_A0A093QCI8_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A087RI20_A0A087RI20_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A093K7L6_A0A093K7L6_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A0A0ACA6_A0A0A0ACA6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A093GLR9_A0A093GLR9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A091IM91_A0A091IM91_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A1S2ZU65_A0A1S2ZU65_ERIEU_9365 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A1S3ENG8_A0A1S3ENG8_DIPOR_10020 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A1S3FC29_A0A1S3FC29_DIPOR_10020 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A1U7S6L7_A0A1U7S6L7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A3Q0DFP8_A0A3Q0DFP8_MESAU_10036 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A226NJ27_A0A226NJ27_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A226PHC1_A0A226PHC1_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2K5M8F8_A0A2K5M8F8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2K6C7A0_A0A2K6C7A0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2K5XN10_A0A2K5XN10_MANLE_9568 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2R8ZZJ3_A0A2R8ZZJ3_PANPA_9597 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2U4A0L0_A0A2U4A0L0_TURTR_9739 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2U3ZRV1_A0A2U3ZRV1_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2U3YND3_A0A2U3YND3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2Y9FY41_A0A2Y9FY41_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2Y9IF74_A0A2Y9IF74_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2Y9LXM0_A0A2Y9LXM0_DELLE_9749 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A2Y9FH30_A0A2Y9FH30_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F1NZD3_F1NZD3_CHICK_9031 and tr_A0A384CYA7_A0A384CYA7_URSMA_29073 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A2I3HZ39_A0A2I3HZ39_NOMLE_61853 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_G1QFE5_G1QFE5_MYOLU_59463 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_G3QIT4_G3QIT4_GORGO_9595 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and sp_Q5RF83_CIRBP_PONAB_9601 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_G1NCX2_G1NCX2_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_H9G3U1_H9G3U1_ANOCA_28377 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_F6XHA7_F6XHA7_CANLF_9615 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_H2QEU2_H2QEU2_PANTR_9598 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_F7FGU1_F7FGU1_ORNAN_9258 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_W5PP54_W5PP54_SHEEP_9940 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A287DF85_A0A287DF85_ICTTR_43179 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and sp_Q14011_CIRBP_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_F7DU86_F7DU86_MACMU_9544 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_G5AZK4_G5AZK4_HETGA_10181 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_K7F4E2_K7F4E2_PELSI_13735 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_G3UCF3_G3UCF3_LOXAF_9785 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_H0YRK3_H0YRK3_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_F7AB55_F7AB55_CALJA_9483 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A286ZNG8_A0A286ZNG8_PIG_9823 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_G7PYA6_G7PYA6_MACFA_9541 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_Q3SZN4_Q3SZN4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_L5L6N6_L5L6N6_PTEAL_9402 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_U3KHV9_U3KHV9_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_U3IFI6_U3IFI6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A2I3LFF5_A0A2I3LFF5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A091DCU8_A0A091DCU8_FUKDA_885580 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A0D9RIJ2_A0A0D9RIJ2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A151PFT4_A0A151PFT4_ALLMI_8496 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A0Q3MJ20_A0A0Q3MJ20_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A091FU46_A0A091FU46_CORBR_85066 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A091JHM1_A0A091JHM1_EGRGA_188379 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A093QDD5_A0A093QDD5_9PASS_328815 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A091VEE1_A0A091VEE1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A087R358_A0A087R358_APTFO_9233 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A093K4Z0_A0A093K4Z0_STRCA_441894 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A091V5L1_A0A091V5L1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A099ZUL0_A0A099ZUL0_TINGU_94827 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A091GK85_A0A091GK85_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A0A0AWT3_A0A0A0AWT3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A2I0LJX7_A0A2I0LJX7_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A093I4E2_A0A093I4E2_DRYPU_118200 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A091I9W9_A0A091I9W9_CALAN_9244 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A1S3FPN1_A0A1S3FPN1_DIPOR_10020 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A3Q0FX96_A0A3Q0FX96_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A1V4KQB2_A0A1V4KQB2_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A218U9J0_A0A218U9J0_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A226MHE9_A0A226MHE9_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A226PEN7_A0A226PEN7_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A2K5NPN9_A0A2K5NPN9_CERAT_9531 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A2K6C4I3_A0A2K6C4I3_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A2K5ZKQ4_A0A2K5ZKQ4_MANLE_9568 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A2R9B0C3_A0A2R9B0C3_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A2U3ZAS2_A0A2U3ZAS2_ODORO_9708 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A2U3YAU6_A0A2U3YAU6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A2Y9DPK8_A0A2Y9DPK8_TRIMA_127582 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A2Y9MK12_A0A2Y9MK12_DELLE_9749 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A2Y9TL63_A0A2Y9TL63_PHYCD_9755 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A384DRM5_A0A384DRM5_URSMA_29073 are exactly identical! WARNING: Sequences tr_Q5ZLU8_Q5ZLU8_CHICK_9031 and tr_A0A383ZNL8_A0A383ZNL8_BALAS_310752 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_G1MV83_G1MV83_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_H0Z8P1_H0Z8P1_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_U3KFX7_U3KFX7_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_U3I859_U3I859_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A151NHB9_A0A151NHB9_ALLMI_8496 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A0Q3P7V5_A0A0Q3P7V5_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A091F372_A0A091F372_CORBR_85066 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A091JL41_A0A091JL41_EGRGA_188379 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A093PT69_A0A093PT69_9PASS_328815 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A091UWX1_A0A091UWX1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A087RD46_A0A087RD46_APTFO_9233 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A093HLK8_A0A093HLK8_STRCA_441894 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A091XRK7_A0A091XRK7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A099YUT7_A0A099YUT7_TINGU_94827 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A091FLX6_A0A091FLX6_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A0A0AMP6_A0A0A0AMP6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A2I0LUU4_A0A2I0LUU4_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A093GIF2_A0A093GIF2_DRYPU_118200 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A1U7SM66_A0A1U7SM66_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q9DDU8_Q9DDU8_CHICK_9031 and tr_A0A218UF36_A0A218UF36_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A087WPY7_A0A087WPY7_MOUSE_10090 and tr_A0A087WR82_A0A087WR82_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A087WPY7_A0A087WPY7_MOUSE_10090 and tr_B2RWR6_B2RWR6_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A087WPY7_A0A087WPY7_MOUSE_10090 and tr_J3QK27_J3QK27_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A087WPY7_A0A087WPY7_MOUSE_10090 and sp_O35698_RBY1A_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A2I3BRL8_A0A2I3BRL8_MOUSE_10090 and sp_Q91VM5_RMXL1_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A2I3BRL8_A0A2I3BRL8_MOUSE_10090 and tr_G3H9H7_G3H9H7_CRIGR_10029 are exactly identical! WARNING: Sequences tr_A0A2I3BRL8_A0A2I3BRL8_MOUSE_10090 and tr_A0A0A0MXW9_A0A0A0MXW9_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A2I3BRL8_A0A2I3BRL8_MOUSE_10090 and tr_A0A1U7QNT2_A0A1U7QNT2_MESAU_10036 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_M3YQB9_M3YQB9_MUSPF_9669 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_G1P1F1_G1P1F1_MYOLU_59463 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_G3HND9_G3HND9_CRIGR_10029 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_F6YEU3_F6YEU3_HORSE_9796 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_G5BJH4_G5BJH4_HETGA_10181 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_G3TM10_G3TM10_LOXAF_9785 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_G1M1W2_G1M1W2_AILME_9646 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_L5JVH8_L5JVH8_PTEAL_9402 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A337SMY0_A0A337SMY0_FELCA_9685 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A091CTG3_A0A091CTG3_FUKDA_885580 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A091DIT2_A0A091DIT2_FUKDA_885580 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A1S3A4Y6_A0A1S3A4Y6_ERIEU_9365 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A1S3GI15_A0A1S3GI15_DIPOR_10020 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A1U7SSZ5_A0A1U7SSZ5_TARSY_1868482 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A1U7QSL7_A0A1U7QSL7_MESAU_10036 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A2U3VNY4_A0A2U3VNY4_ODORO_9708 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A2Y9DLJ6_A0A2Y9DLJ6_TRIMA_127582 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A2Y9K1H2_A0A2Y9K1H2_ENHLU_391180 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A2Y9F5V3_A0A2Y9F5V3_PHYCD_9755 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A384C4R5_A0A384C4R5_URSMA_29073 are exactly identical! WARNING: Sequences sp_O89086_RBM3_MOUSE_10090 and tr_A0A383ZZ13_A0A383ZZ13_BALAS_310752 are exactly identical! WARNING: Sequences sp_P60824_CIRBP_MOUSE_10090 and tr_G3HF68_G3HF68_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P60824_CIRBP_MOUSE_10090 and sp_P60825_CIRBP_RAT_10116 are exactly identical! WARNING: Sequences sp_P60824_CIRBP_MOUSE_10090 and tr_A0A0H5AWX5_A0A0H5AWX5_MESAU_10036 are exactly identical! WARNING: Sequences sp_P60824_CIRBP_MOUSE_10090 and tr_A0A3Q0D8B8_A0A3Q0D8B8_MESAU_10036 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_M3XVM4_M3XVM4_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A2I3G2U7_A0A2I3G2U7_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_G1P5J2_G1P5J2_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_G3HKN2_G3HKN2_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_G3R305_G3R305_GORGO_9595 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_H2PC92_H2PC92_PONAB_9601 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_R4GAT3_R4GAT3_ANOCA_28377 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_G1U9B4_G1U9B4_RABIT_9986 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_E2RD37_E2RD37_CANLF_9615 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_H2QNW6_H2QNW6_PANTR_9598 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_F7DAK4_F7DAK4_ORNAN_9258 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_F7DUM8_F7DUM8_MONDO_13616 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_F6QL56_F6QL56_HORSE_9796 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_W5QH84_W5QH84_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and sp_P62997_TRA2B_RAT_10116 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_I3M8E8_I3M8E8_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_H0WRY6_H0WRY6_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_H0V7I1_H0V7I1_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and sp_P62995_TRA2B_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_F6TT71_F6TT71_MACMU_9544 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_G5BT96_G5BT96_HETGA_10181 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_K7G6A8_K7G6A8_PELSI_13735 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_G3UFI5_G3UFI5_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_F6ZDN6_F6ZDN6_CALJA_9483 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_Q06AA7_Q06AA7_PIG_9823 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_G1MEC0_G1MEC0_AILME_9646 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_G7NYM6_G7NYM6_MACFA_9541 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and sp_Q3ZBT6_TRA2B_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_M3WDF5_M3WDF5_FELCA_9685 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A096N3T3_A0A096N3T3_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A0D9RNI1_A0A0D9RNI1_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A1S2ZID6_A0A1S2ZID6_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A1S3GN52_A0A1S3GN52_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A1U7TFX3_A0A1U7TFX3_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A3Q0CUI3_A0A3Q0CUI3_MESAU_10036 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A2K5NAJ1_A0A2K5NAJ1_CERAT_9531 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A2K6CBA7_A0A2K6CBA7_MACNE_9545 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A2K5XDL8_A0A2K5XDL8_MANLE_9568 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A2R9B6E8_A0A2R9B6E8_PANPA_9597 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A2U4C8J3_A0A2U4C8J3_TURTR_9739 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A2U3WVE3_A0A2U3WVE3_ODORO_9708 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A2U3XPQ3_A0A2U3XPQ3_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A2Y9DWF7_A0A2Y9DWF7_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A2Y9JF85_A0A2Y9JF85_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A2Y9MUB2_A0A2Y9MUB2_DELLE_9749 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A2Y9FJP4_A0A2Y9FJP4_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A384D8R6_A0A384D8R6_URSMA_29073 are exactly identical! WARNING: Sequences sp_P62996_TRA2B_MOUSE_10090 and tr_A0A384B7R9_A0A384B7R9_BALAS_310752 are exactly identical! WARNING: Sequences tr_H2L8D3_H2L8D3_ORYLA_8090 and tr_G3PYU0_G3PYU0_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2MKV1_H2MKV1_ORYLA_8090 and tr_M4AY37_M4AY37_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2MKV1_H2MKV1_ORYLA_8090 and tr_A0A096LWI7_A0A096LWI7_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A2I3GZU2_A0A2I3GZU2_NOMLE_61853 and tr_G3QST9_G3QST9_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GZU2_A0A2I3GZU2_NOMLE_61853 and tr_A0A2J8R8N0_A0A2J8R8N0_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GZU2_A0A2I3GZU2_NOMLE_61853 and tr_H2QYJ9_H2QYJ9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GZU2_A0A2I3GZU2_NOMLE_61853 and sp_P98179_RBM3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GZU2_A0A2I3GZU2_NOMLE_61853 and tr_U3EBH3_U3EBH3_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3GZU2_A0A2I3GZU2_NOMLE_61853 and tr_G7Q2M9_G7Q2M9_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3GZU2_A0A2I3GZU2_NOMLE_61853 and tr_A0A2I3MGL6_A0A2I3MGL6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GZU2_A0A2I3GZU2_NOMLE_61853 and tr_A0A0D9RLC1_A0A0D9RLC1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3GZU2_A0A2I3GZU2_NOMLE_61853 and tr_A0A2K5LEZ2_A0A2K5LEZ2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GZU2_A0A2I3GZU2_NOMLE_61853 and tr_A0A2K6DQM1_A0A2K6DQM1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3GZU2_A0A2I3GZU2_NOMLE_61853 and tr_A0A2K6A584_A0A2K6A584_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GZU2_A0A2I3GZU2_NOMLE_61853 and tr_A0A2R9AXF1_A0A2R9AXF1_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1S996_G1S996_NOMLE_61853 and tr_A0A2I2YHF4_A0A2I2YHF4_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1S996_G1S996_NOMLE_61853 and tr_G2HFJ8_G2HFJ8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S996_G1S996_NOMLE_61853 and sp_O75526_RMXL2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S996_G1S996_NOMLE_61853 and tr_A0A1D5RIC8_A0A1D5RIC8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1S996_G1S996_NOMLE_61853 and tr_A0A096NF50_A0A096NF50_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1S996_G1S996_NOMLE_61853 and tr_A0A0D9SDA4_A0A0D9SDA4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1S996_G1S996_NOMLE_61853 and tr_A0A2K6AP98_A0A2K6AP98_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1Q0B1_G1Q0B1_MYOLU_59463 and tr_H0WX61_H0WX61_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1Q0B1_G1Q0B1_MYOLU_59463 and tr_A0A1U7UE35_A0A1U7UE35_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A0E1S0P5_A0A0E1S0P5_COCIM_246410 and tr_E9DI03_E9DI03_COCPS_443226 are exactly identical! WARNING: Sequences tr_A0A0E1S0P5_A0A0E1S0P5_COCIM_246410 and tr_A0A0J6YEG2_A0A0J6YEG2_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6QVN3_B6QVN3_TALMQ_441960 and tr_A0A093VTU1_A0A093VTU1_TALMA_1077442 are exactly identical! WARNING: Sequences tr_D8RM89_D8RM89_SELML_88036 and tr_D8S2J5_D8S2J5_SELML_88036 are exactly identical! WARNING: Sequences tr_A0A2I2YSB6_A0A2I2YSB6_GORGO_9595 and tr_A0A2I3M345_A0A2I3M345_PAPAN_9555 are exactly identical! WARNING: Sequences tr_C0NAS6_C0NAS6_AJECG_447093 and tr_F0UJD1_F0UJD1_AJEC8_544711 are exactly identical! WARNING: Sequences tr_C0NAS6_C0NAS6_AJECG_447093 and tr_A6R3X5_A6R3X5_AJECN_339724 are exactly identical! WARNING: Sequences tr_C0NAS6_C0NAS6_AJECG_447093 and tr_A0A2B7Z8L8_A0A2B7Z8L8_9EURO_73230 are exactly identical! WARNING: Sequences tr_B8N8I7_B8N8I7_ASPFN_332952 and tr_Q2UHP2_Q2UHP2_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8N8I7_B8N8I7_ASPFN_332952 and tr_A0A1S9DYJ2_A0A1S9DYJ2_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A179UCX5_A0A179UCX5_BLAGS_559298 and tr_C5GH95_C5GH95_AJEDR_559297 are exactly identical! WARNING: Sequences tr_A0A2I3RE87_A0A2I3RE87_PANTR_9598 and tr_A0A2I3RKE5_A0A2I3RKE5_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3RE87_A0A2I3RE87_PANTR_9598 and tr_A0A2I3TBX3_A0A2I3TBX3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3RE87_A0A2I3RE87_PANTR_9598 and tr_A0A2I3TC34_A0A2I3TC34_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3RE87_A0A2I3RE87_PANTR_9598 and tr_H2RFS6_H2RFS6_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3RSF2_A0A2I3RSF2_PANTR_9598 and tr_A0A2R9AWB6_A0A2R9AWB6_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3S026_A0A2I3S026_PANTR_9598 and tr_A0A2I3TBT0_A0A2I3TBT0_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2R4L4_H2R4L4_PANTR_9598 and sp_P0C8Z4_RMXL3_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2R4L4_H2R4L4_PANTR_9598 and tr_A0A2R9ACI9_A0A2R9ACI9_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6U8N4_F6U8N4_MONDO_13616 and tr_G3W698_G3W698_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7E6M5_F7E6M5_MONDO_13616 and tr_G3VUT8_G3VUT8_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7E6M5_F7E6M5_MONDO_13616 and tr_A0A337SH30_A0A337SH30_FELCA_9685 are exactly identical! WARNING: Sequences tr_W5PRQ0_W5PRQ0_SHEEP_9940 and tr_F6RBQ9_F6RBQ9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F9FIY0_F9FIY0_FUSOF_660025 and tr_A0A0D2Y0I9_A0A0D2Y0I9_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9FIY0_F9FIY0_FUSOF_660025 and tr_N4TUN0_N4TUN0_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FIY0_F9FIY0_FUSOF_660025 and tr_X0C222_X0C222_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FIY0_F9FIY0_FUSOF_660025 and tr_A0A2H3U5F2_A0A2H3U5F2_FUSOX_5507 are exactly identical! WARNING: Sequences sp_D4AE41_RMXL1_RAT_10116 and sp_P84586_RMXRL_RAT_10116 are exactly identical! WARNING: Sequences tr_Q4WX84_Q4WX84_ASPFU_330879 and tr_A1D7J1_A1D7J1_NEOFI_331117 are exactly identical! WARNING: Sequences tr_M4AG37_M4AG37_XIPMA_8083 and tr_A0A087Y5D5_A0A087Y5D5_POEFO_48698 are exactly identical! WARNING: Sequences tr_K4D3B1_K4D3B1_SOLLC_4081 and tr_M1CQM3_M1CQM3_SOLTU_4113 are exactly identical! WARNING: Sequences sp_A6NDE4_RBY1B_HUMAN_9606 and sp_A6NEQ0_RBY1E_HUMAN_9606 are exactly identical! WARNING: Sequences sp_A6NDE4_RBY1B_HUMAN_9606 and sp_P0C7P1_RBY1D_HUMAN_9606 are exactly identical! WARNING: Sequences sp_A6NDE4_RBY1B_HUMAN_9606 and sp_P0DJD3_RBY1A_HUMAN_9606 are exactly identical! WARNING: Sequences sp_A6NDE4_RBY1B_HUMAN_9606 and sp_Q15415_RBY1F_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q96E39_RMXL1_HUMAN_9606 and tr_A0A1D5RJV5_A0A1D5RJV5_MACMU_9544 are exactly identical! WARNING: Sequences tr_J3MJ37_J3MJ37_ORYBR_4533 and tr_A0A0E0HXL9_A0A0E0HXL9_ORYNI_4536 are exactly identical! WARNING: Sequences tr_J3MJ37_J3MJ37_ORYBR_4533 and tr_I1Q8N0_I1Q8N0_ORYGL_4538 are exactly identical! WARNING: Sequences tr_J3MJ37_J3MJ37_ORYBR_4533 and tr_A0A0E0E876_A0A0E0E876_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_J3MJ37_J3MJ37_ORYBR_4533 and tr_A0A0E0Q513_A0A0E0Q513_ORYRU_4529 are exactly identical! WARNING: Sequences tr_J3MJ37_J3MJ37_ORYBR_4533 and tr_A0A0D3GN53_A0A0D3GN53_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_J3MJ37_J3MJ37_ORYBR_4533 and tr_A0A0E0AGP3_A0A0E0AGP3_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_J3MJ37_J3MJ37_ORYBR_4533 and tr_A0A0E0LI04_A0A0E0LI04_ORYPU_4537 are exactly identical! WARNING: Sequences tr_J3N1R4_J3N1R4_ORYBR_4533 and tr_A0A0E0M6H1_A0A0E0M6H1_ORYPU_4537 are exactly identical! WARNING: Sequences tr_A0A0E0I3D7_A0A0E0I3D7_ORYNI_4536 and tr_I1Q291_I1Q291_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0I3D7_A0A0E0I3D7_ORYNI_4536 and tr_A0A0E0QAV9_A0A0E0QAV9_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0I3D7_A0A0E0I3D7_ORYNI_4536 and tr_A0A0D3GT80_A0A0D3GT80_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0I3D7_A0A0E0I3D7_ORYNI_4536 and tr_Q0D4V3_Q0D4V3_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0IQI2_A0A0E0IQI2_ORYNI_4536 and tr_I1QTD2_I1QTD2_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0IQI2_A0A0E0IQI2_ORYNI_4536 and tr_A0A0E0QXH8_A0A0E0QXH8_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0IQI2_A0A0E0IQI2_ORYNI_4536 and tr_A0A0D3HC77_A0A0D3HC77_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0IQI2_A0A0E0IQI2_ORYNI_4536 and tr_A0A0E0B8Y2_A0A0E0B8Y2_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0IQI2_A0A0E0IQI2_ORYNI_4536 and tr_Q109W0_Q109W0_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0J916_A0A0E0J916_ORYNI_4536 and tr_A2ZN20_A2ZN20_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0J916_A0A0E0J916_ORYNI_4536 and tr_I1R848_I1R848_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0J916_A0A0E0J916_ORYNI_4536 and tr_A0A0E0FET8_A0A0E0FET8_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0J916_A0A0E0J916_ORYNI_4536 and tr_A0A0D3HX19_A0A0D3HX19_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0J916_A0A0E0J916_ORYNI_4536 and tr_A0A0E0BVL0_A0A0E0BVL0_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0J916_A0A0E0J916_ORYNI_4536 and tr_A0A0D9Y1Q9_A0A0D9Y1Q9_9ORYZ_77586 are exactly identical! WARNING: Sequences tr_A0A0E0JAP5_A0A0E0JAP5_ORYNI_4536 and tr_A2ZKT5_A2ZKT5_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0JAP5_A0A0E0JAP5_ORYNI_4536 and tr_I1R6K8_I1R6K8_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0JAP5_A0A0E0JAP5_ORYNI_4536 and tr_A0A0E0FCC2_A0A0E0FCC2_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0JAP5_A0A0E0JAP5_ORYNI_4536 and tr_A0A0E0RHL4_A0A0E0RHL4_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0JAP5_A0A0E0JAP5_ORYNI_4536 and tr_A0A0D3HUS8_A0A0D3HUS8_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0JAP5_A0A0E0JAP5_ORYNI_4536 and tr_A0A0E0BT20_A0A0E0BT20_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0JAP5_A0A0E0JAP5_ORYNI_4536 and tr_Q2QQ97_Q2QQ97_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A1D5QBC4_A0A1D5QBC4_MACMU_9544 and tr_A0A2K5MZV2_A0A2K5MZV2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5QBC4_A0A1D5QBC4_MACMU_9544 and tr_A0A2K6AM70_A0A2K6AM70_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5QN77_A0A1D5QN77_MACMU_9544 and tr_A0A2K5LPG8_A0A2K5LPG8_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5QN77_A0A1D5QN77_MACMU_9544 and tr_A0A2K5YHZ7_A0A2K5YHZ7_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HS42_F7HS42_MACMU_9544 and tr_A0A2I3NH15_A0A2I3NH15_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2K1JRW9_A0A2K1JRW9_PHYPA_3218 and tr_A0A2K1JS34_A0A2K1JS34_PHYPA_3218 are exactly identical! WARNING: Sequences tr_B8AP37_B8AP37_ORYSI_39946 and tr_A0A0E0NZC7_A0A0E0NZC7_ORYRU_4529 are exactly identical! WARNING: Sequences tr_B8AP37_B8AP37_ORYSI_39946 and tr_A0A0D9VX80_A0A0D9VX80_9ORYZ_77586 are exactly identical! WARNING: Sequences tr_B8AP37_B8AP37_ORYSI_39946 and tr_Q10FE7_Q10FE7_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B8APJ2_B8APJ2_ORYSI_39946 and tr_I1PEE9_I1PEE9_ORYGL_4538 are exactly identical! WARNING: Sequences tr_B8APJ2_B8APJ2_ORYSI_39946 and tr_A0A0E0NZL5_A0A0E0NZL5_ORYRU_4529 are exactly identical! WARNING: Sequences tr_B8APJ2_B8APJ2_ORYSI_39946 and tr_A0A0D9ZBN4_A0A0D9ZBN4_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_B8APJ2_B8APJ2_ORYSI_39946 and tr_A0A0E0KHH2_A0A0E0KHH2_ORYPU_4537 are exactly identical! WARNING: Sequences tr_B8APJ2_B8APJ2_ORYSI_39946 and tr_Q7Y008_Q7Y008_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F4P9N8_F4P9N8_BATDJ_684364 and tr_A0A177WW97_A0A177WW97_BATDE_403673 are exactly identical! WARNING: Sequences tr_A0A0E0RKD9_A0A0E0RKD9_ORYRU_4529 and tr_A0A0E0MPX4_A0A0E0MPX4_ORYPU_4537 are exactly identical! WARNING: Sequences tr_A0A0E0RKD9_A0A0E0RKD9_ORYRU_4529 and tr_Q2QLR2_Q2QLR2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_C6TJN7_C6TJN7_SOYBN_3847 and tr_I1JZI4_I1JZI4_SOYBN_3847 are exactly identical! WARNING: Sequences tr_I1JJG3_I1JJG3_SOYBN_3847 and tr_I1M6J9_I1M6J9_SOYBN_3847 are exactly identical! WARNING: Sequences tr_F2SP44_F2SP44_TRIRC_559305 and tr_A0A178F3K7_A0A178F3K7_TRIRU_5551 are exactly identical! WARNING: Sequences tr_B3RIY8_B3RIY8_TRIAD_10228 and tr_A0A369RY94_A0A369RY94_9METZ_287889 are exactly identical! WARNING: Sequences tr_M4EA67_M4EA67_BRARP_51351 and tr_A0A078GQ11_A0A078GQ11_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4ENB4_M4ENB4_BRARP_51351 and tr_A0A078FRU9_A0A078FRU9_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4ENB4_M4ENB4_BRARP_51351 and tr_A0A078K3M7_A0A078K3M7_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4ENB4_M4ENB4_BRARP_51351 and tr_A0A0D3C112_A0A0D3C112_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M7Z1R7_M7Z1R7_TRIUA_4572 and tr_A0A3B6AYC5_A0A3B6AYC5_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M7Z1R7_M7Z1R7_TRIUA_4572 and tr_A0A3B6C520_A0A3B6C520_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M7ZB35_M7ZB35_TRIUA_4572 and tr_A0A3B6NRD7_A0A3B6NRD7_WHEAT_4565 are exactly identical! WARNING: Sequences tr_W5LL73_W5LL73_ASTMX_7994 and tr_A0A2D0RH05_A0A2D0RH05_ICTPU_7998 are exactly identical! WARNING: Sequences tr_W5LL73_W5LL73_ASTMX_7994 and tr_A0A2D0RIR8_A0A2D0RIR8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A3B6HWX4_A0A3B6HWX4_WHEAT_4565 and tr_A0A3B6IM57_A0A3B6IM57_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6HWX4_A0A3B6HWX4_WHEAT_4565 and tr_A0A3B6JCT6_A0A3B6JCT6_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6NTA2_A0A3B6NTA2_WHEAT_4565 and tr_A0A3B6QKL3_A0A3B6QKL3_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6PLS9_A0A3B6PLS9_WHEAT_4565 and tr_A0A3B6QER9_A0A3B6QER9_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A015KK77_A0A015KK77_9GLOM_1432141 and tr_A0A2I1DR50_A0A2I1DR50_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015KK77_A0A015KK77_9GLOM_1432141 and tr_A0A2H5S6Z8_A0A2H5S6Z8_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A0D3FM91_A0A0D3FM91_9ORYZ_65489 and tr_A0A0D9ZBD7_A0A0D9ZBD7_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A067D6I7_A0A067D6I7_CITSI_2711 and tr_A0A067GC17_A0A067GC17_CITSI_2711 are exactly identical! WARNING: Sequences tr_A0A067D6I7_A0A067D6I7_CITSI_2711 and tr_V4SBW0_V4SBW0_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A0A0K5W4_A0A0A0K5W4_CUCSA_3659 and tr_A0A1S3C164_A0A1S3C164_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0D2MLZ1_A0A0D2MLZ1_GOSRA_29730 and tr_A0A1U8NPZ1_A0A1U8NPZ1_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2P2M4_A0A0D2P2M4_GOSRA_29730 and tr_A0A1U8N4Q3_A0A1U8N4Q3_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2SY61_A0A0D2SY61_GOSRA_29730 and tr_A0A1U8IMB4_A0A1U8IMB4_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0L9TIL2_A0A0L9TIL2_PHAAN_3914 and tr_A0A3Q0EVJ3_A0A3Q0EVJ3_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A0L9VHN7_A0A0L9VHN7_PHAAN_3914 and tr_A0A1S3V0W4_A0A1S3V0W4_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A2I0M4L5_A0A2I0M4L5_COLLI_8932 and tr_A0A1V4KYL9_A0A1V4KYL9_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3XBV6_A0A1S3XBV6_TOBAC_4097 and tr_A0A1S3ZI52_A0A1S3ZI52_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S3XBV6_A0A1S3XBV6_TOBAC_4097 and tr_A0A1J6ILV6_A0A1J6ILV6_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3XBV6_A0A1S3XBV6_TOBAC_4097 and tr_A0A1U7XL82_A0A1U7XL82_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AFM9_A0A1S4AFM9_TOBAC_4097 and tr_A0A1S4DES4_A0A1S4DES4_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S4AFM9_A0A1S4AFM9_TOBAC_4097 and tr_A0A1J6JRV3_A0A1J6JRV3_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4AFM9_A0A1S4AFM9_TOBAC_4097 and tr_A0A1U7WNY7_A0A1U7WNY7_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AZM8_A0A1S4AZM8_TOBAC_4097 and tr_A0A1J6I3N3_A0A1J6I3N3_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4AZM8_A0A1S4AZM8_TOBAC_4097 and tr_A0A1U7VTY2_A0A1U7VTY2_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4CRD6_A0A1S4CRD6_TOBAC_4097 and tr_A0A1U7YDT3_A0A1U7YDT3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3M0M4_A0A1S3M0M4_SALSA_8030 and tr_A0A060YYG8_A0A060YYG8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3M5V0_A0A1S3M5V0_SALSA_8030 and tr_A0A060W9P5_A0A060W9P5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MM07_A0A1S3MM07_SALSA_8030 and tr_A0A1S3T5B3_A0A1S3T5B3_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3MM07_A0A1S3MM07_SALSA_8030 and tr_A0A060W2X8_A0A060W2X8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MM07_A0A1S3MM07_SALSA_8030 and tr_A0A060XYL4_A0A060XYL4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MMA2_A0A1S3MMA2_SALSA_8030 and tr_C1BH84_C1BH84_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3R533_A0A1S3R533_SALSA_8030 and tr_A0A060XI29_A0A060XI29_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3RRK8_A0A1S3RRK8_SALSA_8030 and tr_C0H8T1_C0H8T1_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3STN2_A0A1S3STN2_SALSA_8030 and tr_A0A060XNY6_A0A060XNY6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B5DGP8_B5DGP8_SALSA_8030 and tr_B5X2C8_B5X2C8_SALSA_8030 are exactly identical! WARNING: Sequences tr_B5DGP8_B5DGP8_SALSA_8030 and tr_A0A060XY17_A0A060XY17_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q7ZYV6_Q7ZYV6_SALSA_8030 and tr_A0A060Y6S9_A0A060Y6S9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1F5LM80_A0A1F5LM80_9EURO_1835702 and tr_A0A1V6PPD8_A0A1V6PPD8_9EURO_416450 are exactly identical! WARNING: Sequences tr_A0A1L8F3C0_A0A1L8F3C0_XENLA_8355 and tr_A0A1L8F813_A0A1L8F813_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A2D0T906_A0A2D0T906_ICTPU_7998 and tr_A0A2D0T914_A0A2D0T914_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G2YIY9_A0A2G2YIY9_CAPAN_4072 and tr_A0A2G3BC45_A0A2G3BC45_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2K5LUN6_A0A2K5LUN6_CERAT_9531 and tr_A0A2K6B497_A0A2K6B497_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I1G3G5_A0A2I1G3G5_9GLOM_588596 and tr_A0A2H5S7G3_A0A2H5S7G3_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A2U1KB93_A0A2U1KB93_ARTAN_35608 and tr_A0A2U1P6D6_A0A2U1P6D6_ARTAN_35608 are exactly identical! WARNING: Sequences tr_A0A2U3VIC9_A0A2U3VIC9_ODORO_9708 and tr_A0A2U3YPS8_A0A2U3YPS8_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 399 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7X1/3_mltree/Q8N7X1.raxml.reduced.phy Alignment comprises 1 partitions and 77 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 77 / 77 Gaps: 1.16 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7X1/3_mltree/Q8N7X1.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1000 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 77 / 6160 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -119571.879463] Initial branch length optimization [00:00:01 -98112.065516] Model parameter optimization (eps = 10.000000) [00:00:30 -97766.688291] AUTODETECT spr round 1 (radius: 5) [00:02:01 -66515.495316] AUTODETECT spr round 2 (radius: 10) [00:03:44 -49564.815033] AUTODETECT spr round 3 (radius: 15) [00:05:35 -37950.021805] AUTODETECT spr round 4 (radius: 20) [00:07:27 -32896.859102] AUTODETECT spr round 5 (radius: 25) [00:09:27 -30471.426651] SPR radius for FAST iterations: 25 (autodetect) [00:09:27 -30471.426651] Model parameter optimization (eps = 3.000000) [00:09:41 -30460.002582] FAST spr round 1 (radius: 25) [00:11:23 -24004.818750] FAST spr round 2 (radius: 25) [00:12:48 -23337.350962] FAST spr round 3 (radius: 25) [00:14:07 -23297.581323] FAST spr round 4 (radius: 25) [00:15:23 -23297.580251] Model parameter optimization (eps = 1.000000) [00:15:34 -23281.829021] SLOW spr round 1 (radius: 5) [00:16:52 -23276.073977] SLOW spr round 2 (radius: 5) [00:18:11 -23273.628692] SLOW spr round 3 (radius: 5) [00:19:29 -23272.646913] SLOW spr round 4 (radius: 5) [00:20:44 -23272.646863] SLOW spr round 5 (radius: 10) [00:22:08 -23271.280322] SLOW spr round 6 (radius: 5) [00:23:36 -23265.258910] SLOW spr round 7 (radius: 5) [00:24:58 -23259.916237] SLOW spr round 8 (radius: 5) [00:26:14 -23259.735734] SLOW spr round 9 (radius: 5) [00:27:29 -23259.734337] SLOW spr round 10 (radius: 10) [00:28:51 -23259.734278] SLOW spr round 11 (radius: 15) [00:30:30 -23249.839789] SLOW spr round 12 (radius: 5) [00:31:58 -23249.159744] SLOW spr round 13 (radius: 5) [00:33:16 -23249.158162] SLOW spr round 14 (radius: 10) [00:34:35 -23249.157957] SLOW spr round 15 (radius: 15) [00:36:10 -23249.157916] SLOW spr round 16 (radius: 20) [00:37:59 -23249.157905] SLOW spr round 17 (radius: 25) [00:40:10 -23248.825191] SLOW spr round 18 (radius: 5) [00:41:41 -23244.674894] SLOW spr round 19 (radius: 5) [00:42:51] [worker #1] ML tree search #2, logLikelihood: -23211.327814 [00:43:02 -23242.046359] SLOW spr round 20 (radius: 5) [00:44:18 -23242.041719] SLOW spr round 21 (radius: 10) [00:45:35 -23238.772436] SLOW spr round 22 (radius: 5) [00:46:57 -23238.771592] SLOW spr round 23 (radius: 10) [00:48:17 -23238.771457] SLOW spr round 24 (radius: 15) [00:49:49 -23238.771433] SLOW spr round 25 (radius: 20) [00:51:38 -23238.771426] SLOW spr round 26 (radius: 25) [00:53:47 -23238.771419] Model parameter optimization (eps = 0.100000) [00:53:51] [worker #0] ML tree search #1, logLikelihood: -23238.685215 [00:53:51 -119641.118412] Initial branch length optimization [00:53:53 -98123.462161] Model parameter optimization (eps = 10.000000) [00:54:16 -97762.311513] AUTODETECT spr round 1 (radius: 5) [00:55:40 -66452.429672] AUTODETECT spr round 2 (radius: 10) [00:57:15 -49559.520369] AUTODETECT spr round 3 (radius: 15) [00:58:52 -39738.165447] AUTODETECT spr round 4 (radius: 20) [01:00:35 -34105.941317] AUTODETECT spr round 5 (radius: 25) [01:02:25 -31830.075723] SPR radius for FAST iterations: 25 (autodetect) [01:02:25 -31830.075723] Model parameter optimization (eps = 3.000000) [01:02:39 -31803.670562] FAST spr round 1 (radius: 25) [01:04:16 -24462.222538] FAST spr round 2 (radius: 25) [01:05:41 -23845.519911] FAST spr round 3 (radius: 25) [01:06:58 -23718.314047] FAST spr round 4 (radius: 25) [01:08:10 -23704.486263] FAST spr round 5 (radius: 25) [01:09:22 -23704.486056] Model parameter optimization (eps = 1.000000) [01:09:29 -23703.093589] SLOW spr round 1 (radius: 5) [01:10:41 -23697.148159] SLOW spr round 2 (radius: 5) [01:11:53 -23697.144615] SLOW spr round 3 (radius: 10) [01:13:13 -23694.350200] SLOW spr round 4 (radius: 5) [01:14:38 -23692.037380] SLOW spr round 5 (radius: 5) [01:15:55 -23692.037300] SLOW spr round 6 (radius: 10) [01:17:18 -23690.934092] SLOW spr round 7 (radius: 5) [01:18:43 -23689.165070] SLOW spr round 8 (radius: 5) [01:20:00 -23689.164129] SLOW spr round 9 (radius: 10) [01:21:20 -23689.163977] SLOW spr round 10 (radius: 15) [01:23:02 -23673.210665] SLOW spr round 11 (radius: 5) [01:24:31 -23672.413517] SLOW spr round 12 (radius: 5) [01:25:50 -23672.413042] SLOW spr round 13 (radius: 10) [01:27:13 -23668.879531] SLOW spr round 14 (radius: 5) [01:28:34 -23668.868013] SLOW spr round 15 (radius: 10) [01:29:59 -23668.866981] SLOW spr round 16 (radius: 15) [01:31:41 -23668.866881] SLOW spr round 17 (radius: 20) [01:33:51 -23613.916112] SLOW spr round 18 (radius: 5) [01:35:33 -23387.519943] SLOW spr round 19 (radius: 5) [01:36:59 -23382.002927] SLOW spr round 20 (radius: 5) [01:38:20 -23382.002740] SLOW spr round 21 (radius: 10) [01:38:31] [worker #1] ML tree search #4, logLikelihood: -23197.506170 [01:39:42 -23382.002719] SLOW spr round 22 (radius: 15) [01:41:24 -23369.152356] SLOW spr round 23 (radius: 5) [01:42:58 -23355.708568] SLOW spr round 24 (radius: 5) [01:44:20 -23355.706865] SLOW spr round 25 (radius: 10) [01:45:45 -23355.706723] SLOW spr round 26 (radius: 15) [01:47:27 -23355.706698] SLOW spr round 27 (radius: 20) [01:49:30 -23355.706659] SLOW spr round 28 (radius: 25) [01:51:49 -23353.509724] SLOW spr round 29 (radius: 5) [01:53:21 -23353.509668] SLOW spr round 30 (radius: 10) [01:54:50 -23353.509654] SLOW spr round 31 (radius: 15) [01:56:28 -23353.509647] SLOW spr round 32 (radius: 20) [01:58:25 -23353.509641] SLOW spr round 33 (radius: 25) [02:00:37 -23353.509634] Model parameter optimization (eps = 0.100000) [02:00:42] [worker #0] ML tree search #3, logLikelihood: -23353.392002 [02:00:43 -119162.416820] Initial branch length optimization [02:00:44 -97653.927864] Model parameter optimization (eps = 10.000000) [02:01:07 -97325.244138] AUTODETECT spr round 1 (radius: 5) [02:02:31 -66140.235942] AUTODETECT spr round 2 (radius: 10) [02:04:09 -49491.418132] AUTODETECT spr round 3 (radius: 15) [02:05:47 -40299.313548] AUTODETECT spr round 4 (radius: 20) [02:07:34 -35759.398540] AUTODETECT spr round 5 (radius: 25) [02:09:37 -30800.424704] SPR radius for FAST iterations: 25 (autodetect) [02:09:37 -30800.424704] Model parameter optimization (eps = 3.000000) [02:09:51 -30764.288482] FAST spr round 1 (radius: 25) [02:11:25 -24059.133006] FAST spr round 2 (radius: 25) [02:12:47 -23736.815351] FAST spr round 3 (radius: 25) [02:14:03 -23707.407489] FAST spr round 4 (radius: 25) [02:15:15 -23702.336664] FAST spr round 5 (radius: 25) [02:16:25 -23701.959640] FAST spr round 6 (radius: 25) [02:17:35 -23701.959628] Model parameter optimization (eps = 1.000000) [02:17:43 -23700.720428] SLOW spr round 1 (radius: 5) [02:18:57 -23694.542582] SLOW spr round 2 (radius: 5) [02:20:10 -23694.541299] SLOW spr round 3 (radius: 10) [02:21:30 -23691.871318] SLOW spr round 4 (radius: 5) [02:22:56 -23688.657850] SLOW spr round 5 (radius: 5) [02:24:17 -23687.433974] SLOW spr round 6 (radius: 5) [02:25:36 -23683.440430] SLOW spr round 7 (radius: 5) [02:26:51 -23683.440102] SLOW spr round 8 (radius: 10) [02:28:12 -23683.440062] SLOW spr round 9 (radius: 15) [02:29:56 -23642.807616] SLOW spr round 10 (radius: 5) [02:31:30 -23598.607115] SLOW spr round 11 (radius: 5) [02:32:53 -23598.316572] SLOW spr round 12 (radius: 5) [02:34:12 -23598.314301] SLOW spr round 13 (radius: 10) [02:35:05] [worker #1] ML tree search #6, logLikelihood: -23366.480659 [02:35:34 -23597.326087] SLOW spr round 14 (radius: 5) [02:36:59 -23597.326049] SLOW spr round 15 (radius: 10) [02:38:26 -23596.771396] SLOW spr round 16 (radius: 5) [02:39:49 -23596.771396] SLOW spr round 17 (radius: 10) [02:41:13 -23596.771396] SLOW spr round 18 (radius: 15) [02:42:54 -23587.825143] SLOW spr round 19 (radius: 5) [02:44:26 -23583.502672] SLOW spr round 20 (radius: 5) [02:45:48 -23583.502368] SLOW spr round 21 (radius: 10) [02:47:12 -23583.502357] SLOW spr round 22 (radius: 15) [02:48:47 -23583.502356] SLOW spr round 23 (radius: 20) [02:50:46 -23525.779983] SLOW spr round 24 (radius: 5) [02:52:20 -23361.829613] SLOW spr round 25 (radius: 5) [02:53:44 -23361.463182] SLOW spr round 26 (radius: 5) [02:55:02 -23361.432383] SLOW spr round 27 (radius: 10) [02:56:26 -23353.034974] SLOW spr round 28 (radius: 5) [02:57:51 -23351.693543] SLOW spr round 29 (radius: 5) [02:59:09 -23351.693541] SLOW spr round 30 (radius: 10) [03:00:29 -23351.693540] SLOW spr round 31 (radius: 15) [03:02:03 -23351.693465] SLOW spr round 32 (radius: 20) [03:04:01 -23351.693465] SLOW spr round 33 (radius: 25) [03:06:26 -23351.693413] Model parameter optimization (eps = 0.100000) [03:06:34] [worker #0] ML tree search #5, logLikelihood: -23350.603956 [03:06:34 -118402.114086] Initial branch length optimization [03:06:36 -96907.919172] Model parameter optimization (eps = 10.000000) [03:06:53 -96575.610412] AUTODETECT spr round 1 (radius: 5) [03:08:16 -62906.365457] AUTODETECT spr round 2 (radius: 10) [03:09:50 -48821.474367] AUTODETECT spr round 3 (radius: 15) [03:11:30 -41149.406129] AUTODETECT spr round 4 (radius: 20) [03:13:17 -37688.665771] AUTODETECT spr round 5 (radius: 25) [03:15:18 -32247.551011] SPR radius for FAST iterations: 25 (autodetect) [03:15:18 -32247.551011] Model parameter optimization (eps = 3.000000) [03:15:32 -32192.113843] FAST spr round 1 (radius: 25) [03:17:03 -24556.666353] FAST spr round 2 (radius: 25) [03:18:26 -23427.112705] FAST spr round 3 (radius: 25) [03:19:41 -23242.274173] FAST spr round 4 (radius: 25) [03:20:03] [worker #1] ML tree search #8, logLikelihood: -23234.353436 [03:20:53 -23234.474960] FAST spr round 5 (radius: 25) [03:22:02 -23233.123540] FAST spr round 6 (radius: 25) [03:23:11 -23233.122917] Model parameter optimization (eps = 1.000000) [03:23:23 -23227.171185] SLOW spr round 1 (radius: 5) [03:24:36 -23223.533843] SLOW spr round 2 (radius: 5) [03:25:48 -23223.532192] SLOW spr round 3 (radius: 10) [03:27:08 -23217.763349] SLOW spr round 4 (radius: 5) [03:28:31 -23216.082432] SLOW spr round 5 (radius: 5) [03:29:47 -23216.082398] SLOW spr round 6 (radius: 10) [03:31:05 -23216.082369] SLOW spr round 7 (radius: 15) [03:32:44 -23215.719412] SLOW spr round 8 (radius: 5) [03:34:09 -23215.719260] SLOW spr round 9 (radius: 10) [03:35:33 -23215.392883] SLOW spr round 10 (radius: 5) [03:36:54 -23215.391716] SLOW spr round 11 (radius: 10) [03:38:15 -23215.391237] SLOW spr round 12 (radius: 15) [03:39:57 -23215.390981] SLOW spr round 13 (radius: 20) [03:42:08 -23212.901962] SLOW spr round 14 (radius: 5) [03:43:41 -23208.121683] SLOW spr round 15 (radius: 5) [03:45:04 -23207.807839] SLOW spr round 16 (radius: 5) [03:46:23 -23207.807541] SLOW spr round 17 (radius: 10) [03:47:44 -23207.807539] SLOW spr round 18 (radius: 15) [03:49:27 -23207.807539] SLOW spr round 19 (radius: 20) [03:51:39 -23207.807538] SLOW spr round 20 (radius: 25) [03:54:14 -23203.865517] SLOW spr round 21 (radius: 5) [03:55:48 -23202.504543] SLOW spr round 22 (radius: 5) [03:57:13 -23202.504371] SLOW spr round 23 (radius: 10) [03:58:38 -23202.504367] SLOW spr round 24 (radius: 15) [04:00:19 -23201.718963] SLOW spr round 25 (radius: 5) [04:01:49 -23201.717654] SLOW spr round 26 (radius: 10) [04:03:16 -23201.717555] SLOW spr round 27 (radius: 15) [04:04:58 -23201.717547] SLOW spr round 28 (radius: 20) [04:07:01 -23201.717547] SLOW spr round 29 (radius: 25) [04:09:25 -23201.717547] Model parameter optimization (eps = 0.100000) [04:09:28] [worker #0] ML tree search #7, logLikelihood: -23201.710920 [04:09:28 -119613.626867] Initial branch length optimization [04:09:31 -97971.480377] Model parameter optimization (eps = 10.000000) [04:09:49 -97654.366044] AUTODETECT spr round 1 (radius: 5) [04:11:16 -65584.441810] AUTODETECT spr round 2 (radius: 10) [04:12:56 -47920.756389] AUTODETECT spr round 3 (radius: 15) [04:14:37 -38658.195412] AUTODETECT spr round 4 (radius: 20) [04:16:23 -35668.515318] AUTODETECT spr round 5 (radius: 25) [04:18:25 -31725.824104] SPR radius for FAST iterations: 25 (autodetect) [04:18:25 -31725.824104] Model parameter optimization (eps = 3.000000) [04:18:42 -31688.327644] FAST spr round 1 (radius: 25) [04:20:24 -23765.055493] FAST spr round 2 (radius: 25) [04:21:51 -23364.311228] FAST spr round 3 (radius: 25) [04:23:08 -23331.486024] FAST spr round 4 (radius: 25) [04:24:20 -23330.343249] FAST spr round 5 (radius: 25) [04:25:32 -23329.330417] FAST spr round 6 (radius: 25) [04:26:43 -23329.330352] Model parameter optimization (eps = 1.000000) [04:26:53 -23327.568958] SLOW spr round 1 (radius: 5) [04:27:25] [worker #1] ML tree search #10, logLikelihood: -23193.037811 [04:28:10 -23316.930585] SLOW spr round 2 (radius: 5) [04:29:27 -23310.814907] SLOW spr round 3 (radius: 5) [04:30:43 -23310.814609] SLOW spr round 4 (radius: 10) [04:32:05 -23308.972937] SLOW spr round 5 (radius: 5) [04:33:34 -23305.221468] SLOW spr round 6 (radius: 5) [04:34:55 -23303.906792] SLOW spr round 7 (radius: 5) [04:36:09 -23303.906669] SLOW spr round 8 (radius: 10) [04:37:30 -23300.789711] SLOW spr round 9 (radius: 5) [04:38:59 -23299.957972] SLOW spr round 10 (radius: 5) [04:40:21 -23299.006380] SLOW spr round 11 (radius: 5) [04:41:38 -23299.006380] SLOW spr round 12 (radius: 10) [04:42:59 -23299.006380] SLOW spr round 13 (radius: 15) [04:44:44 -23260.153241] SLOW spr round 14 (radius: 5) [04:46:19 -23192.729296] SLOW spr round 15 (radius: 5) [04:47:42 -23192.729085] SLOW spr round 16 (radius: 10) [04:49:06 -23192.729048] SLOW spr round 17 (radius: 15) [04:50:43 -23192.729040] SLOW spr round 18 (radius: 20) [04:52:41 -23192.729038] SLOW spr round 19 (radius: 25) [04:54:58 -23191.652265] SLOW spr round 20 (radius: 5) [04:56:33 -23191.652104] SLOW spr round 21 (radius: 10) [04:58:01 -23191.652102] SLOW spr round 22 (radius: 15) [04:59:39 -23191.652102] SLOW spr round 23 (radius: 20) [05:01:37 -23191.652102] SLOW spr round 24 (radius: 25) [05:03:54 -23191.652102] Model parameter optimization (eps = 0.100000) [05:04:01] [worker #0] ML tree search #9, logLikelihood: -23191.203009 [05:04:01 -118870.123964] Initial branch length optimization [05:04:02 -97369.021851] Model parameter optimization (eps = 10.000000) [05:04:07] [worker #1] ML tree search #12, logLikelihood: -23295.004027 [05:04:21 -96995.724035] AUTODETECT spr round 1 (radius: 5) [05:05:50 -62771.247376] AUTODETECT spr round 2 (radius: 10) [05:07:28 -44953.596697] AUTODETECT spr round 3 (radius: 15) [05:09:06 -35074.246049] AUTODETECT spr round 4 (radius: 20) [05:10:54 -30561.559430] AUTODETECT spr round 5 (radius: 25) [05:12:46 -29567.319810] SPR radius for FAST iterations: 25 (autodetect) [05:12:46 -29567.319810] Model parameter optimization (eps = 3.000000) [05:13:07 -29516.005444] FAST spr round 1 (radius: 25) [05:14:38 -24294.260360] FAST spr round 2 (radius: 25) [05:15:56 -23826.354126] FAST spr round 3 (radius: 25) [05:17:12 -23626.046957] FAST spr round 4 (radius: 25) [05:18:27 -23583.679953] FAST spr round 5 (radius: 25) [05:19:38 -23550.767745] FAST spr round 6 (radius: 25) [05:20:49 -23550.767644] Model parameter optimization (eps = 1.000000) [05:20:55 -23549.855229] SLOW spr round 1 (radius: 5) [05:22:06 -23545.740408] SLOW spr round 2 (radius: 5) [05:23:17 -23545.659983] SLOW spr round 3 (radius: 10) [05:24:37 -23544.683383] SLOW spr round 4 (radius: 5) [05:26:01 -23544.683111] SLOW spr round 5 (radius: 10) [05:27:23 -23544.202957] SLOW spr round 6 (radius: 5) [05:28:45 -23542.542340] SLOW spr round 7 (radius: 5) [05:30:02 -23542.542320] SLOW spr round 8 (radius: 10) [05:31:20 -23542.542315] SLOW spr round 9 (radius: 15) [05:32:58 -23537.524064] SLOW spr round 10 (radius: 5) [05:34:24 -23534.630470] SLOW spr round 11 (radius: 5) [05:35:41 -23534.628696] SLOW spr round 12 (radius: 10) [05:37:01 -23534.628368] SLOW spr round 13 (radius: 15) [05:38:36 -23534.628302] SLOW spr round 14 (radius: 20) [05:40:33 -23534.628286] SLOW spr round 15 (radius: 25) [05:42:55 -23477.216793] SLOW spr round 16 (radius: 5) [05:44:25 -23473.954018] SLOW spr round 17 (radius: 5) [05:45:55 -23473.953961] SLOW spr round 18 (radius: 10) [05:47:30 -23473.462418] SLOW spr round 19 (radius: 5) [05:49:04 -23473.461907] SLOW spr round 20 (radius: 10) [05:50:40 -23473.461871] SLOW spr round 21 (radius: 15) [05:52:27 -23473.461856] SLOW spr round 22 (radius: 20) [05:54:36 -23473.461841] SLOW spr round 23 (radius: 25) [05:57:16 -23467.565676] SLOW spr round 24 (radius: 5) [05:58:53 -23466.508152] SLOW spr round 25 (radius: 5) [06:00:26 -23466.507689] SLOW spr round 26 (radius: 10) [06:01:54 -23466.507674] SLOW spr round 27 (radius: 15) [06:03:39 -23466.507670] SLOW spr round 28 (radius: 20) [06:05:54 -23466.507665] SLOW spr round 29 (radius: 25) [06:08:36 -23394.491612] SLOW spr round 30 (radius: 5) [06:10:23 -23200.867857] SLOW spr round 31 (radius: 5) [06:12:01 -23174.676210] SLOW spr round 32 (radius: 5) [06:13:25 -23174.039595] SLOW spr round 33 (radius: 5) [06:13:26] [worker #1] ML tree search #14, logLikelihood: -23248.845048 [06:14:45 -23174.039431] SLOW spr round 34 (radius: 10) [06:16:13 -23174.039422] SLOW spr round 35 (radius: 15) [06:17:52 -23174.039416] SLOW spr round 36 (radius: 20) [06:19:48 -23174.039410] SLOW spr round 37 (radius: 25) [06:22:10 -23174.039410] Model parameter optimization (eps = 0.100000) [06:22:19] [worker #0] ML tree search #11, logLikelihood: -23173.791716 [06:22:19 -119421.738566] Initial branch length optimization [06:22:20 -97812.917627] Model parameter optimization (eps = 10.000000) [06:22:38 -97442.393184] AUTODETECT spr round 1 (radius: 5) [06:24:00 -66454.873771] AUTODETECT spr round 2 (radius: 10) [06:25:36 -51517.438245] AUTODETECT spr round 3 (radius: 15) [06:27:13 -39879.548635] AUTODETECT spr round 4 (radius: 20) [06:28:58 -33258.482757] AUTODETECT spr round 5 (radius: 25) [06:30:48 -29858.813753] SPR radius for FAST iterations: 25 (autodetect) [06:30:48 -29858.813753] Model parameter optimization (eps = 3.000000) [06:31:00 -29830.030931] FAST spr round 1 (radius: 25) [06:32:46 -24152.746147] FAST spr round 2 (radius: 25) [06:34:24 -23618.114007] FAST spr round 3 (radius: 25) [06:35:56 -23566.507198] FAST spr round 4 (radius: 25) [06:37:23 -23435.294902] FAST spr round 5 (radius: 25) [06:38:48 -23433.148610] FAST spr round 6 (radius: 25) [06:40:08 -23431.416281] FAST spr round 7 (radius: 25) [06:41:25 -23427.246327] FAST spr round 8 (radius: 25) [06:42:52 -23427.245897] Model parameter optimization (eps = 1.000000) [06:43:08 -23417.134429] SLOW spr round 1 (radius: 5) [06:44:33 -23410.549104] SLOW spr round 2 (radius: 5) [06:45:58 -23410.511572] SLOW spr round 3 (radius: 10) [06:47:23 -23410.145289] SLOW spr round 4 (radius: 5) [06:49:00 -23410.143751] SLOW spr round 5 (radius: 10) [06:50:32 -23407.647810] SLOW spr round 6 (radius: 5) [06:52:03 -23404.637166] SLOW spr round 7 (radius: 5) [06:53:30 -23404.634434] SLOW spr round 8 (radius: 10) [06:54:59 -23404.633790] SLOW spr round 9 (radius: 15) [06:56:53 -23390.674662] SLOW spr round 10 (radius: 5) [06:58:36 -23381.340356] SLOW spr round 11 (radius: 5) [07:00:04 -23381.339588] SLOW spr round 12 (radius: 10) [07:01:34 -23381.339310] SLOW spr round 13 (radius: 15) [07:03:18 -23381.339172] SLOW spr round 14 (radius: 20) [07:05:16 -23381.339098] SLOW spr round 15 (radius: 25) [07:07:35 -23371.865275] SLOW spr round 16 (radius: 5) [07:09:05 -23371.537585] SLOW spr round 17 (radius: 5) [07:10:28 -23323.807893] SLOW spr round 18 (radius: 5) [07:11:44 -23323.807792] SLOW spr round 19 (radius: 10) [07:13:02 -23323.807786] SLOW spr round 20 (radius: 15) [07:14:35 -23322.372780] SLOW spr round 21 (radius: 5) [07:16:02 -23322.367394] SLOW spr round 22 (radius: 10) [07:17:24 -23322.365801] SLOW spr round 23 (radius: 15) [07:18:56 -23322.365285] SLOW spr round 24 (radius: 20) [07:20:51 -23322.365132] SLOW spr round 25 (radius: 25) [07:23:06 -23322.365088] Model parameter optimization (eps = 0.100000) [07:23:15] [worker #0] ML tree search #13, logLikelihood: -23322.126391 [07:23:15 -118238.011548] Initial branch length optimization [07:23:16 -97069.789516] Model parameter optimization (eps = 10.000000) [07:23:38 -96715.322027] AUTODETECT spr round 1 (radius: 5) [07:25:02 -66041.859016] AUTODETECT spr round 2 (radius: 10) [07:26:39 -49455.675402] AUTODETECT spr round 3 (radius: 15) [07:28:16 -40730.699208] AUTODETECT spr round 4 (radius: 20) [07:29:57 -35047.808305] AUTODETECT spr round 5 (radius: 25) [07:31:51 -32523.663395] SPR radius for FAST iterations: 25 (autodetect) [07:31:51 -32523.663395] Model parameter optimization (eps = 3.000000) [07:32:05 -32485.797471] FAST spr round 1 (radius: 25) [07:33:44 -24809.705945] FAST spr round 2 (radius: 25) [07:35:24 -23564.412549] FAST spr round 3 (radius: 25) [07:36:56 -23372.032731] FAST spr round 4 (radius: 25) [07:38:22 -23360.296144] FAST spr round 5 (radius: 25) [07:39:45 -23359.124417] FAST spr round 6 (radius: 25) [07:41:03 -23359.123701] Model parameter optimization (eps = 1.000000) [07:41:15 -23345.803459] SLOW spr round 1 (radius: 5) [07:42:34 -23332.409096] SLOW spr round 2 (radius: 5) [07:44:05 -23330.846433] SLOW spr round 3 (radius: 5) [07:45:27 -23330.846305] SLOW spr round 4 (radius: 10) [07:46:58 -23325.458731] SLOW spr round 5 (radius: 5) [07:48:33 -23322.284631] SLOW spr round 6 (radius: 5) [07:50:00 -23321.340551] SLOW spr round 7 (radius: 5) [07:51:20 -23321.340438] SLOW spr round 8 (radius: 10) [07:52:45 -23321.340428] SLOW spr round 9 (radius: 15) [07:54:37 -23320.819456] SLOW spr round 10 (radius: 5) [07:56:22 -23319.243394] SLOW spr round 11 (radius: 5) [07:57:57 -23319.243376] SLOW spr round 12 (radius: 10) [07:59:34 -23319.243337] SLOW spr round 13 (radius: 15) [08:01:24 -23319.243335] SLOW spr round 14 (radius: 20) [08:03:38 -23318.934552] SLOW spr round 15 (radius: 5) [08:05:17 -23318.934552] SLOW spr round 16 (radius: 10) [08:06:43 -23318.934524] SLOW spr round 17 (radius: 15) [08:08:19 -23318.934524] SLOW spr round 18 (radius: 20) [08:10:16 -23318.934524] SLOW spr round 19 (radius: 25) [08:12:29 -23318.934524] Model parameter optimization (eps = 0.100000) [08:12:35] [worker #0] ML tree search #15, logLikelihood: -23318.763858 [08:12:35 -119150.083057] Initial branch length optimization [08:12:36 -97486.252303] Model parameter optimization (eps = 10.000000) [08:12:57 -97130.176848] AUTODETECT spr round 1 (radius: 5) [08:14:21 -65702.843372] AUTODETECT spr round 2 (radius: 10) [08:16:00 -45983.509843] AUTODETECT spr round 3 (radius: 15) [08:17:45 -37654.070357] AUTODETECT spr round 4 (radius: 20) [08:19:46 -34581.749035] AUTODETECT spr round 5 (radius: 25) [08:21:59 -32271.376201] SPR radius for FAST iterations: 25 (autodetect) [08:21:59 -32271.376201] Model parameter optimization (eps = 3.000000) [08:22:13 -32236.612509] FAST spr round 1 (radius: 25) [08:24:03 -25393.922705] FAST spr round 2 (radius: 25) [08:25:31 -24226.626769] FAST spr round 3 (radius: 25) [08:25:59] [worker #1] ML tree search #16, logLikelihood: -23174.032751 [08:26:56 -24036.933605] FAST spr round 4 (radius: 25) [08:28:22 -24016.305114] FAST spr round 5 (radius: 25) [08:29:39 -24015.408237] FAST spr round 6 (radius: 25) [08:30:57 -24013.926270] FAST spr round 7 (radius: 25) [08:32:14 -24008.313588] FAST spr round 8 (radius: 25) [08:33:32 -24008.313568] Model parameter optimization (eps = 1.000000) [08:33:39 -24006.900685] SLOW spr round 1 (radius: 5) [08:35:00 -24000.796390] SLOW spr round 2 (radius: 5) [08:36:17 -23998.862286] SLOW spr round 3 (radius: 5) [08:37:39 -23998.385422] SLOW spr round 4 (radius: 5) [08:39:01 -23998.385401] SLOW spr round 5 (radius: 10) [08:40:33 -23997.054828] SLOW spr round 6 (radius: 5) [08:42:15 -23992.391062] SLOW spr round 7 (radius: 5) [08:43:47 -23992.390920] SLOW spr round 8 (radius: 10) [08:45:22 -23992.390919] SLOW spr round 9 (radius: 15) [08:47:13 -23976.451636] SLOW spr round 10 (radius: 5) [08:48:54 -23970.275274] SLOW spr round 11 (radius: 5) [08:50:23 -23970.099429] SLOW spr round 12 (radius: 5) [08:51:49 -23970.099258] SLOW spr round 13 (radius: 10) [08:53:23 -23970.099243] SLOW spr round 14 (radius: 15) [08:55:18 -23970.099239] SLOW spr round 15 (radius: 20) [08:57:30 -23970.099239] SLOW spr round 16 (radius: 25) [08:59:42 -23950.259924] SLOW spr round 17 (radius: 5) [09:01:35 -23950.198895] SLOW spr round 18 (radius: 10) [09:03:12 -23946.408672] SLOW spr round 19 (radius: 5) [09:04:45 -23946.408651] SLOW spr round 20 (radius: 10) [09:06:21 -23946.408651] SLOW spr round 21 (radius: 15) [09:08:09 -23830.587633] SLOW spr round 22 (radius: 5) [09:09:49 -23817.323571] SLOW spr round 23 (radius: 5) [09:11:20 -23817.285461] SLOW spr round 24 (radius: 10) [09:12:50 -23817.285458] SLOW spr round 25 (radius: 15) [09:14:41 -23816.643930] SLOW spr round 26 (radius: 5) [09:16:22 -23815.478112] SLOW spr round 27 (radius: 5) [09:17:50 -23815.226386] SLOW spr round 28 (radius: 5) [09:19:11 -23815.226384] SLOW spr round 29 (radius: 10) [09:20:38 -23815.226384] SLOW spr round 30 (radius: 15) [09:22:15 -23809.301130] SLOW spr round 31 (radius: 5) [09:23:42 -23809.268232] SLOW spr round 32 (radius: 10) [09:25:03 -23809.267359] SLOW spr round 33 (radius: 15) [09:26:37 -23809.267313] SLOW spr round 34 (radius: 20) [09:28:27 -23809.267311] SLOW spr round 35 (radius: 25) [09:29:38] [worker #1] ML tree search #18, logLikelihood: -23337.090445 [09:30:29 -23809.267311] Model parameter optimization (eps = 0.100000) [09:30:34] [worker #0] ML tree search #17, logLikelihood: -23809.204908 [09:30:34 -118397.504872] Initial branch length optimization [09:30:36 -97185.200725] Model parameter optimization (eps = 10.000000) [09:30:56 -96821.359350] AUTODETECT spr round 1 (radius: 5) [09:32:21 -64809.708776] AUTODETECT spr round 2 (radius: 10) [09:33:55 -50492.261076] AUTODETECT spr round 3 (radius: 15) [09:35:34 -40741.008876] AUTODETECT spr round 4 (radius: 20) [09:37:17 -32207.751600] AUTODETECT spr round 5 (radius: 25) [09:39:06 -30170.686690] SPR radius for FAST iterations: 25 (autodetect) [09:39:06 -30170.686690] Model parameter optimization (eps = 3.000000) [09:39:20 -30132.503111] FAST spr round 1 (radius: 25) [09:40:54 -23689.637793] FAST spr round 2 (radius: 25) [09:42:14 -23352.109281] FAST spr round 3 (radius: 25) [09:43:29 -23324.950464] FAST spr round 4 (radius: 25) [09:44:41 -23321.074181] FAST spr round 5 (radius: 25) [09:45:50 -23321.074068] Model parameter optimization (eps = 1.000000) [09:46:00 -23319.681034] SLOW spr round 1 (radius: 5) [09:47:13 -23310.640595] SLOW spr round 2 (radius: 5) [09:48:26 -23309.366780] SLOW spr round 3 (radius: 5) [09:49:40 -23309.088183] SLOW spr round 4 (radius: 5) [09:50:52 -23309.014565] SLOW spr round 5 (radius: 10) [09:52:10 -23306.603706] SLOW spr round 6 (radius: 5) [09:53:33 -23306.282105] SLOW spr round 7 (radius: 5) [09:54:49 -23306.282105] SLOW spr round 8 (radius: 10) [09:56:10 -23297.541631] SLOW spr round 9 (radius: 5) [09:57:33 -23296.630208] SLOW spr round 10 (radius: 5) [09:58:51 -23296.629732] SLOW spr round 11 (radius: 10) [10:00:08 -23296.629723] SLOW spr round 12 (radius: 15) [10:01:42 -23294.534336] SLOW spr round 13 (radius: 5) [10:03:10 -23293.809302] SLOW spr round 14 (radius: 5) [10:04:29 -23293.809302] SLOW spr round 15 (radius: 10) [10:05:47 -23293.809302] SLOW spr round 16 (radius: 15) [10:07:20 -23293.809296] SLOW spr round 17 (radius: 20) [10:09:10 -23293.809296] SLOW spr round 18 (radius: 25) [10:11:13 -23292.625347] SLOW spr round 19 (radius: 5) [10:12:44 -23292.241873] SLOW spr round 20 (radius: 5) [10:14:05 -23292.241811] SLOW spr round 21 (radius: 10) [10:15:25 -23292.241795] SLOW spr round 22 (radius: 15) [10:15:37] [worker #1] ML tree search #20, logLikelihood: -23515.178364 [10:16:56 -23292.241795] SLOW spr round 23 (radius: 20) [10:18:44 -23292.241795] SLOW spr round 24 (radius: 25) [10:20:44 -23292.241795] Model parameter optimization (eps = 0.100000) [10:20:51] [worker #0] ML tree search #19, logLikelihood: -23291.726377 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.211782,0.397927) (0.281673,0.426753) (0.261159,1.091295) (0.245386,2.080475) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -23173.791716 AIC score: 50353.583433 / AICc score: 8078377.583433 / BIC score: 55048.225692 Free parameters (model + branch lengths): 2003 WARNING: Number of free parameters (K=2003) is larger than alignment size (n=77). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7X1/3_mltree/Q8N7X1.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7X1/3_mltree/Q8N7X1.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7X1/3_mltree/Q8N7X1.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N7X1/3_mltree/Q8N7X1.raxml.log Analysis started: 03-Jul-2021 22:34:02 / finished: 04-Jul-2021 08:54:55 Elapsed time: 37252.259 seconds Consumed energy: 2476.097 Wh (= 12 km in an electric car, or 62 km with an e-scooter!)