RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 02-Jul-2021 21:24:52 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N7U7/2_msa/Q8N7U7_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N7U7/3_mltree/Q8N7U7 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N7U7/2_msa/Q8N7U7_trimmed_msa.fasta
[00:00:00] Loaded alignment with 242 taxa and 23 sites

WARNING: Sequences tr_Q7JQV9_Q7JQV9_DROME_7227 and tr_B4HMJ6_B4HMJ6_DROSE_7238 are exactly identical!
WARNING: Sequences tr_A0A2I2YFL3_A0A2I2YFL3_GORGO_9595 and tr_A0A2I3SFN5_A0A2I3SFN5_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2YFL3_A0A2I2YFL3_GORGO_9595 and tr_H2RE93_H2RE93_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2ZKU4_A0A2I2ZKU4_GORGO_9595 and sp_Q8N7U7_TPRX1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3REL5_G3REL5_GORGO_9595 and tr_H2PWR4_H2PWR4_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3REL5_G3REL5_GORGO_9595 and tr_A0A2J8LE89_A0A2J8LE89_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3REL5_G3REL5_GORGO_9595 and tr_F6QM13_F6QM13_HORSE_9796 are exactly identical!
WARNING: Sequences tr_G3REL5_G3REL5_GORGO_9595 and sp_Q5H9F3_BCORL_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3REL5_G3REL5_GORGO_9595 and tr_F7HWE9_F7HWE9_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G3REL5_G3REL5_GORGO_9595 and tr_F1RTH5_F1RTH5_PIG_9823 are exactly identical!
WARNING: Sequences tr_G3REL5_G3REL5_GORGO_9595 and tr_A0A2R9C2Z4_A0A2R9C2Z4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_Q4DEG8_Q4DEG8_TRYCC_353153 and tr_Q4DF61_Q4DF61_TRYCC_353153 are exactly identical!
WARNING: Sequences tr_A0A212F565_A0A212F565_DANPL_278856 and tr_A0A212FLF8_A0A212FLF8_DANPL_278856 are exactly identical!
WARNING: Sequences tr_A0A3B1IFR4_A0A3B1IFR4_ASTMX_7994 and tr_A0A3B1JAI3_A0A3B1JAI3_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A3B1ILX6_A0A3B1ILX6_ASTMX_7994 and tr_A0A3B1IQ95_A0A3B1IQ95_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A3B1ILX6_A0A3B1ILX6_ASTMX_7994 and tr_A0A3B1JM42_A0A3B1JM42_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A3B1ILX6_A0A3B1ILX6_ASTMX_7994 and tr_A0A3B1K0I8_A0A3B1K0I8_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A3B1IMF7_A0A3B1IMF7_ASTMX_7994 and tr_A0A3B1IR44_A0A3B1IR44_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A3B1IT69_A0A3B1IT69_ASTMX_7994 and tr_A0A3B1JHJ3_A0A3B1JHJ3_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A3B1IT69_A0A3B1IT69_ASTMX_7994 and tr_A0A3B1K074_A0A3B1K074_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A3B1IT69_A0A3B1IT69_ASTMX_7994 and tr_A0A3B1KCE2_A0A3B1KCE2_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A3B1IT69_A0A3B1IT69_ASTMX_7994 and tr_A0A3B1KK24_A0A3B1KK24_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A015LWW2_A0A015LWW2_9GLOM_1432141 and tr_A0A2H5RW27_A0A2H5RW27_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A0L9V2T3_A0A0L9V2T3_PHAAN_3914 and tr_A0A3Q0F7U6_A0A3Q0F7U6_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A0L9V3C0_A0A0L9V3C0_PHAAN_3914 and tr_A0A1S3UN47_A0A1S3UN47_VIGRR_3916 are exactly identical!
WARNING: Duplicate sequences found: 25

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N7U7/3_mltree/Q8N7U7.raxml.reduced.phy

Alignment comprises 1 partitions and 23 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 23 / 23
Gaps: 10.60 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N7U7/3_mltree/Q8N7U7.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 242 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 23 / 1840
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -8621.114688] Initial branch length optimization
[00:00:00 -7091.704811] Model parameter optimization (eps = 10.000000)
[00:00:04 -7026.261128] AUTODETECT spr round 1 (radius: 5)
[00:00:07 -5863.197404] AUTODETECT spr round 2 (radius: 10)
[00:00:12 -5137.699560] AUTODETECT spr round 3 (radius: 15)
[00:00:18 -4705.164656] AUTODETECT spr round 4 (radius: 20)
[00:00:24 -4617.767856] AUTODETECT spr round 5 (radius: 25)
[00:00:30 -4585.485074] SPR radius for FAST iterations: 25 (autodetect)
[00:00:30 -4585.485074] Model parameter optimization (eps = 3.000000)
[00:00:33 -4572.731712] FAST spr round 1 (radius: 25)
[00:00:38 -4394.198542] FAST spr round 2 (radius: 25)
[00:00:43 -4334.200961] FAST spr round 3 (radius: 25)
[00:00:47 -4320.754315] FAST spr round 4 (radius: 25)
[00:00:51 -4318.262396] FAST spr round 5 (radius: 25)
[00:00:55 -4316.652451] FAST spr round 6 (radius: 25)
[00:00:58 -4316.652298] Model parameter optimization (eps = 1.000000)
[00:01:07 -4309.947449] SLOW spr round 1 (radius: 5)
[00:01:12 -4307.378052] SLOW spr round 2 (radius: 5)
[00:01:18 -4305.436564] SLOW spr round 3 (radius: 5)
[00:01:24 -4305.402001] SLOW spr round 4 (radius: 10)
[00:01:29 -4302.749693] SLOW spr round 5 (radius: 5)
[00:01:36 -4302.681524] SLOW spr round 6 (radius: 10)
[00:01:43 -4300.369936] SLOW spr round 7 (radius: 5)
[00:01:50 -4299.400151] SLOW spr round 8 (radius: 5)
[00:01:55 -4299.396809] SLOW spr round 9 (radius: 10)
[00:02:01 -4299.385805] SLOW spr round 10 (radius: 15)
[00:02:11 -4290.215927] SLOW spr round 11 (radius: 5)
[00:02:19 -4286.963144] SLOW spr round 12 (radius: 5)
[00:02:25 -4286.962903] SLOW spr round 13 (radius: 10)
[00:02:30 -4285.360044] SLOW spr round 14 (radius: 5)
[00:02:37 -4285.359922] SLOW spr round 15 (radius: 10)
[00:02:43 -4285.359922] SLOW spr round 16 (radius: 15)
[00:02:52 -4284.179361] SLOW spr round 17 (radius: 5)
[00:02:59 -4284.179324] SLOW spr round 18 (radius: 10)
[00:03:05 -4284.179323] SLOW spr round 19 (radius: 15)
[00:03:15 -4284.113059] SLOW spr round 20 (radius: 20)
[00:03:25 -4284.112940] SLOW spr round 21 (radius: 25)
[00:03:35 -4279.200200] SLOW spr round 22 (radius: 5)
[00:03:43 -4279.200091] SLOW spr round 23 (radius: 10)
[00:03:49 -4279.200069] SLOW spr round 24 (radius: 15)
[00:03:58 -4279.200063] SLOW spr round 25 (radius: 20)
[00:04:09 -4279.200061] SLOW spr round 26 (radius: 25)
[00:04:19 -4278.950883] SLOW spr round 27 (radius: 5)
[00:04:26 -4278.950882] SLOW spr round 28 (radius: 10)
[00:04:33 -4278.950882] SLOW spr round 29 (radius: 15)
[00:04:42 -4278.950882] SLOW spr round 30 (radius: 20)
[00:04:53 -4278.950882] SLOW spr round 31 (radius: 25)
[00:05:03 -4278.950882] Model parameter optimization (eps = 0.100000)

[00:05:05] ML tree search #1, logLikelihood: -4277.604890

[00:05:05 -8702.167827] Initial branch length optimization
[00:05:05 -7089.327590] Model parameter optimization (eps = 10.000000)
[00:05:09 -7038.966675] AUTODETECT spr round 1 (radius: 5)
[00:05:12 -5790.970826] AUTODETECT spr round 2 (radius: 10)
[00:05:17 -5172.627053] AUTODETECT spr round 3 (radius: 15)
[00:05:22 -4793.700140] AUTODETECT spr round 4 (radius: 20)
[00:05:28 -4630.246618] AUTODETECT spr round 5 (radius: 25)
[00:05:33 -4615.467320] SPR radius for FAST iterations: 25 (autodetect)
[00:05:33 -4615.467320] Model parameter optimization (eps = 3.000000)
[00:05:35 -4607.911506] FAST spr round 1 (radius: 25)
[00:05:39 -4385.465506] FAST spr round 2 (radius: 25)
[00:05:44 -4353.078732] FAST spr round 3 (radius: 25)
[00:05:47 -4346.829336] FAST spr round 4 (radius: 25)
[00:05:51 -4346.825353] Model parameter optimization (eps = 1.000000)
[00:05:52 -4346.551439] SLOW spr round 1 (radius: 5)
[00:05:58 -4345.919765] SLOW spr round 2 (radius: 5)
[00:06:03 -4345.628154] SLOW spr round 3 (radius: 5)
[00:06:09 -4345.627676] SLOW spr round 4 (radius: 10)
[00:06:14 -4343.407874] SLOW spr round 5 (radius: 5)
[00:06:21 -4341.955684] SLOW spr round 6 (radius: 5)
[00:06:28 -4341.955564] SLOW spr round 7 (radius: 10)
[00:06:33 -4341.955564] SLOW spr round 8 (radius: 15)
[00:06:41 -4339.422125] SLOW spr round 9 (radius: 5)
[00:06:48 -4339.422121] SLOW spr round 10 (radius: 10)
[00:06:54 -4339.422121] SLOW spr round 11 (radius: 15)
[00:07:02 -4338.851975] SLOW spr round 12 (radius: 5)
[00:07:09 -4338.851823] SLOW spr round 13 (radius: 10)
[00:07:15 -4338.851820] SLOW spr round 14 (radius: 15)
[00:07:23 -4338.276247] SLOW spr round 15 (radius: 5)
[00:07:30 -4338.128370] SLOW spr round 16 (radius: 5)
[00:07:36 -4338.125851] SLOW spr round 17 (radius: 10)
[00:07:42 -4338.124185] SLOW spr round 18 (radius: 15)
[00:07:50 -4338.123103] SLOW spr round 19 (radius: 20)
[00:08:00 -4332.995512] SLOW spr round 20 (radius: 5)
[00:08:08 -4330.224584] SLOW spr round 21 (radius: 5)
[00:08:14 -4330.224406] SLOW spr round 22 (radius: 10)
[00:08:19 -4326.060430] SLOW spr round 23 (radius: 5)
[00:08:27 -4325.811694] SLOW spr round 24 (radius: 5)
[00:08:33 -4325.811666] SLOW spr round 25 (radius: 10)
[00:08:38 -4325.811666] SLOW spr round 26 (radius: 15)
[00:08:46 -4322.717825] SLOW spr round 27 (radius: 5)
[00:08:54 -4322.364906] SLOW spr round 28 (radius: 5)
[00:09:00 -4322.364593] SLOW spr round 29 (radius: 10)
[00:09:06 -4321.903841] SLOW spr round 30 (radius: 5)
[00:09:13 -4321.795137] SLOW spr round 31 (radius: 5)
[00:09:19 -4321.794215] SLOW spr round 32 (radius: 10)
[00:09:24 -4321.794072] SLOW spr round 33 (radius: 15)
[00:09:33 -4321.359017] SLOW spr round 34 (radius: 5)
[00:09:40 -4321.359014] SLOW spr round 35 (radius: 10)
[00:09:46 -4321.359014] SLOW spr round 36 (radius: 15)
[00:09:54 -4321.262795] SLOW spr round 37 (radius: 20)
[00:10:03 -4320.367816] SLOW spr round 38 (radius: 5)
[00:10:10 -4320.367698] SLOW spr round 39 (radius: 10)
[00:10:17 -4320.367686] SLOW spr round 40 (radius: 15)
[00:10:24 -4320.346442] SLOW spr round 41 (radius: 20)
[00:10:34 -4320.006278] SLOW spr round 42 (radius: 5)
[00:10:41 -4319.980348] SLOW spr round 43 (radius: 10)
[00:10:47 -4319.979526] SLOW spr round 44 (radius: 15)
[00:10:55 -4319.979300] SLOW spr round 45 (radius: 20)
[00:11:04 -4319.872964] SLOW spr round 46 (radius: 5)
[00:11:12 -4319.872857] SLOW spr round 47 (radius: 10)
[00:11:18 -4319.872847] SLOW spr round 48 (radius: 15)
[00:11:26 -4319.872844] SLOW spr round 49 (radius: 20)
[00:11:35 -4319.872843] SLOW spr round 50 (radius: 25)
[00:11:44 -4317.873601] SLOW spr round 51 (radius: 5)
[00:11:52 -4317.701319] SLOW spr round 52 (radius: 5)
[00:11:58 -4317.701080] SLOW spr round 53 (radius: 10)
[00:12:03 -4317.334155] SLOW spr round 54 (radius: 5)
[00:12:10 -4317.334150] SLOW spr round 55 (radius: 10)
[00:12:16 -4317.334150] SLOW spr round 56 (radius: 15)
[00:12:24 -4317.334150] SLOW spr round 57 (radius: 20)
[00:12:33 -4317.011020] SLOW spr round 58 (radius: 5)
[00:12:40 -4317.011007] SLOW spr round 59 (radius: 10)
[00:12:47 -4317.011006] SLOW spr round 60 (radius: 15)
[00:12:55 -4317.011006] SLOW spr round 61 (radius: 20)
[00:13:04 -4317.011005] SLOW spr round 62 (radius: 25)
[00:13:13 -4316.664045] SLOW spr round 63 (radius: 5)
[00:13:20 -4316.167906] SLOW spr round 64 (radius: 5)
[00:13:27 -4316.167811] SLOW spr round 65 (radius: 10)
[00:13:32 -4316.167810] SLOW spr round 66 (radius: 15)
[00:13:41 -4316.167810] SLOW spr round 67 (radius: 20)
[00:13:50 -4316.167810] SLOW spr round 68 (radius: 25)
[00:13:59 -4316.167810] Model parameter optimization (eps = 0.100000)

[00:14:00] ML tree search #2, logLikelihood: -4313.947240

[00:14:00 -8735.764406] Initial branch length optimization
[00:14:00 -7134.415821] Model parameter optimization (eps = 10.000000)
[00:14:04 -7088.707191] AUTODETECT spr round 1 (radius: 5)
[00:14:08 -5908.611415] AUTODETECT spr round 2 (radius: 10)
[00:14:13 -5146.527379] AUTODETECT spr round 3 (radius: 15)
[00:14:19 -4766.939901] AUTODETECT spr round 4 (radius: 20)
[00:14:26 -4659.214569] AUTODETECT spr round 5 (radius: 25)
[00:14:32 -4624.077455] SPR radius for FAST iterations: 25 (autodetect)
[00:14:32 -4624.077455] Model parameter optimization (eps = 3.000000)
[00:14:34 -4618.152695] FAST spr round 1 (radius: 25)
[00:14:38 -4397.737564] FAST spr round 2 (radius: 25)
[00:14:42 -4374.473808] FAST spr round 3 (radius: 25)
[00:14:46 -4356.176431] FAST spr round 4 (radius: 25)
[00:14:50 -4356.175810] Model parameter optimization (eps = 1.000000)
[00:14:52 -4355.869547] SLOW spr round 1 (radius: 5)
[00:14:58 -4353.773889] SLOW spr round 2 (radius: 5)
[00:15:04 -4348.919698] SLOW spr round 3 (radius: 5)
[00:15:10 -4348.886282] SLOW spr round 4 (radius: 10)
[00:15:15 -4342.337762] SLOW spr round 5 (radius: 5)
[00:15:23 -4342.304221] SLOW spr round 6 (radius: 10)
[00:15:29 -4338.202867] SLOW spr round 7 (radius: 5)
[00:15:36 -4338.200739] SLOW spr round 8 (radius: 10)
[00:15:42 -4338.200549] SLOW spr round 9 (radius: 15)
[00:15:52 -4335.569584] SLOW spr round 10 (radius: 5)
[00:15:59 -4335.544851] SLOW spr round 11 (radius: 10)
[00:16:06 -4335.544228] SLOW spr round 12 (radius: 15)
[00:16:15 -4335.543724] SLOW spr round 13 (radius: 20)
[00:16:26 -4333.989845] SLOW spr round 14 (radius: 5)
[00:16:34 -4333.989426] SLOW spr round 15 (radius: 10)
[00:16:40 -4333.989159] SLOW spr round 16 (radius: 15)
[00:16:49 -4333.988949] SLOW spr round 17 (radius: 20)
[00:17:00 -4333.988782] SLOW spr round 18 (radius: 25)
[00:17:10 -4332.926827] SLOW spr round 19 (radius: 5)
[00:17:18 -4328.462367] SLOW spr round 20 (radius: 5)
[00:17:24 -4328.371388] SLOW spr round 21 (radius: 10)
[00:17:30 -4328.370879] SLOW spr round 22 (radius: 15)
[00:17:39 -4328.083913] SLOW spr round 23 (radius: 5)
[00:17:47 -4328.083684] SLOW spr round 24 (radius: 10)
[00:17:53 -4328.083632] SLOW spr round 25 (radius: 15)
[00:18:02 -4328.083607] SLOW spr round 26 (radius: 20)
[00:18:13 -4327.676888] SLOW spr round 27 (radius: 5)
[00:18:20 -4327.676849] SLOW spr round 28 (radius: 10)
[00:18:27 -4327.676840] SLOW spr round 29 (radius: 15)
[00:18:36 -4327.676834] SLOW spr round 30 (radius: 20)
[00:18:46 -4325.534448] SLOW spr round 31 (radius: 5)
[00:18:54 -4324.714000] SLOW spr round 32 (radius: 5)
[00:19:00 -4324.712584] SLOW spr round 33 (radius: 10)
[00:19:06 -4324.712484] SLOW spr round 34 (radius: 15)
[00:19:15 -4324.712472] SLOW spr round 35 (radius: 20)
[00:19:26 -4324.712470] SLOW spr round 36 (radius: 25)
[00:19:36 -4324.461192] SLOW spr round 37 (radius: 5)
[00:19:43 -4324.360076] SLOW spr round 38 (radius: 5)
[00:19:50 -4324.356309] SLOW spr round 39 (radius: 10)
[00:19:55 -4324.206237] SLOW spr round 40 (radius: 5)
[00:20:02 -4324.206028] SLOW spr round 41 (radius: 10)
[00:20:09 -4324.206019] SLOW spr round 42 (radius: 15)
[00:20:17 -4323.996376] SLOW spr round 43 (radius: 5)
[00:20:25 -4323.996269] SLOW spr round 44 (radius: 10)
[00:20:31 -4323.996246] SLOW spr round 45 (radius: 15)
[00:20:40 -4323.996236] SLOW spr round 46 (radius: 20)
[00:20:51 -4323.996232] SLOW spr round 47 (radius: 25)
[00:21:01 -4323.822726] SLOW spr round 48 (radius: 5)
[00:21:08 -4308.646688] SLOW spr round 49 (radius: 5)
[00:21:15 -4308.643047] SLOW spr round 50 (radius: 10)
[00:21:21 -4308.643014] SLOW spr round 51 (radius: 15)
[00:21:30 -4308.643013] SLOW spr round 52 (radius: 20)
[00:21:40 -4308.643012] SLOW spr round 53 (radius: 25)
[00:21:50 -4308.643012] Model parameter optimization (eps = 0.100000)

[00:21:51] ML tree search #3, logLikelihood: -4307.827837

[00:21:51 -8677.339604] Initial branch length optimization
[00:21:52 -7093.286313] Model parameter optimization (eps = 10.000000)
[00:21:55 -7041.417355] AUTODETECT spr round 1 (radius: 5)
[00:21:59 -5735.384923] AUTODETECT spr round 2 (radius: 10)
[00:22:04 -4983.046423] AUTODETECT spr round 3 (radius: 15)
[00:22:09 -4672.978041] AUTODETECT spr round 4 (radius: 20)
[00:22:15 -4626.298732] AUTODETECT spr round 5 (radius: 25)
[00:22:22 -4581.439023] SPR radius for FAST iterations: 25 (autodetect)
[00:22:22 -4581.439023] Model parameter optimization (eps = 3.000000)
[00:22:24 -4572.426866] FAST spr round 1 (radius: 25)
[00:22:28 -4354.715492] FAST spr round 2 (radius: 25)
[00:22:32 -4335.688824] FAST spr round 3 (radius: 25)
[00:22:36 -4334.708999] FAST spr round 4 (radius: 25)
[00:22:40 -4333.912796] FAST spr round 5 (radius: 25)
[00:22:43 -4333.912732] Model parameter optimization (eps = 1.000000)
[00:22:45 -4332.265366] SLOW spr round 1 (radius: 5)
[00:22:51 -4331.954167] SLOW spr round 2 (radius: 5)
[00:22:57 -4331.377963] SLOW spr round 3 (radius: 5)
[00:23:02 -4329.703392] SLOW spr round 4 (radius: 5)
[00:23:08 -4329.655119] SLOW spr round 5 (radius: 10)
[00:23:13 -4327.163445] SLOW spr round 6 (radius: 5)
[00:23:20 -4327.163034] SLOW spr round 7 (radius: 10)
[00:23:27 -4323.404682] SLOW spr round 8 (radius: 5)
[00:23:34 -4323.368025] SLOW spr round 9 (radius: 10)
[00:23:41 -4320.987879] SLOW spr round 10 (radius: 5)
[00:23:48 -4320.858512] SLOW spr round 11 (radius: 5)
[00:23:54 -4320.856043] SLOW spr round 12 (radius: 10)
[00:24:00 -4319.826461] SLOW spr round 13 (radius: 5)
[00:24:07 -4319.826274] SLOW spr round 14 (radius: 10)
[00:24:14 -4319.634673] SLOW spr round 15 (radius: 5)
[00:24:21 -4319.600814] SLOW spr round 16 (radius: 10)
[00:24:27 -4317.843738] SLOW spr round 17 (radius: 5)
[00:24:34 -4317.843714] SLOW spr round 18 (radius: 10)
[00:24:40 -4317.843714] SLOW spr round 19 (radius: 15)
[00:24:52 -4301.357347] SLOW spr round 20 (radius: 5)
[00:24:59 -4299.441229] SLOW spr round 21 (radius: 5)
[00:25:06 -4299.244014] SLOW spr round 22 (radius: 5)
[00:25:11 -4299.243446] SLOW spr round 23 (radius: 10)
[00:25:17 -4299.243441] SLOW spr round 24 (radius: 15)
[00:25:28 -4298.546613] SLOW spr round 25 (radius: 5)
[00:25:35 -4298.546351] SLOW spr round 26 (radius: 10)
[00:25:42 -4298.383405] SLOW spr round 27 (radius: 5)
[00:25:49 -4298.383405] SLOW spr round 28 (radius: 10)
[00:25:55 -4298.383405] SLOW spr round 29 (radius: 15)
[00:26:05 -4298.288310] SLOW spr round 30 (radius: 20)
[00:26:18 -4295.087626] SLOW spr round 31 (radius: 5)
[00:26:25 -4295.087526] SLOW spr round 32 (radius: 10)
[00:26:32 -4294.455516] SLOW spr round 33 (radius: 5)
[00:26:39 -4294.455509] SLOW spr round 34 (radius: 10)
[00:26:45 -4294.455509] SLOW spr round 35 (radius: 15)
[00:26:55 -4294.455509] SLOW spr round 36 (radius: 20)
[00:27:08 -4294.068146] SLOW spr round 37 (radius: 5)
[00:27:15 -4293.999357] SLOW spr round 38 (radius: 10)
[00:27:22 -4293.997848] SLOW spr round 39 (radius: 15)
[00:27:32 -4293.997774] SLOW spr round 40 (radius: 20)
[00:27:45 -4293.997771] SLOW spr round 41 (radius: 25)
[00:27:55 -4290.386485] SLOW spr round 42 (radius: 5)
[00:28:03 -4289.640745] SLOW spr round 43 (radius: 5)
[00:28:09 -4289.640299] SLOW spr round 44 (radius: 10)
[00:28:15 -4289.412196] SLOW spr round 45 (radius: 5)
[00:28:22 -4289.407300] SLOW spr round 46 (radius: 10)
[00:28:28 -4289.407073] SLOW spr round 47 (radius: 15)
[00:28:38 -4289.407058] SLOW spr round 48 (radius: 20)
[00:28:51 -4289.407057] SLOW spr round 49 (radius: 25)
[00:29:00 -4289.407057] Model parameter optimization (eps = 0.100000)

[00:29:07] ML tree search #4, logLikelihood: -4281.254525

[00:29:07 -8698.285993] Initial branch length optimization
[00:29:07 -7401.513733] Model parameter optimization (eps = 10.000000)
[00:29:11 -7100.714460] AUTODETECT spr round 1 (radius: 5)
[00:29:14 -5761.971314] AUTODETECT spr round 2 (radius: 10)
[00:29:19 -4855.674570] AUTODETECT spr round 3 (radius: 15)
[00:29:25 -4591.763229] AUTODETECT spr round 4 (radius: 20)
[00:29:31 -4469.401338] AUTODETECT spr round 5 (radius: 25)
[00:29:37 -4463.345793] SPR radius for FAST iterations: 25 (autodetect)
[00:29:37 -4463.345793] Model parameter optimization (eps = 3.000000)
[00:29:38 -4462.086711] FAST spr round 1 (radius: 25)
[00:29:42 -4336.430575] FAST spr round 2 (radius: 25)
[00:29:47 -4319.991810] FAST spr round 3 (radius: 25)
[00:29:51 -4311.533419] FAST spr round 4 (radius: 25)
[00:29:55 -4296.705482] FAST spr round 5 (radius: 25)
[00:29:58 -4295.778427] FAST spr round 6 (radius: 25)
[00:30:02 -4295.777243] Model parameter optimization (eps = 1.000000)
[00:30:04 -4294.627144] SLOW spr round 1 (radius: 5)
[00:30:10 -4293.785328] SLOW spr round 2 (radius: 5)
[00:30:15 -4293.784942] SLOW spr round 3 (radius: 10)
[00:30:20 -4291.143166] SLOW spr round 4 (radius: 5)
[00:30:27 -4291.143029] SLOW spr round 5 (radius: 10)
[00:30:33 -4288.205351] SLOW spr round 6 (radius: 5)
[00:30:40 -4287.214356] SLOW spr round 7 (radius: 5)
[00:30:46 -4287.212134] SLOW spr round 8 (radius: 10)
[00:30:51 -4287.210937] SLOW spr round 9 (radius: 15)
[00:31:00 -4287.099229] SLOW spr round 10 (radius: 5)
[00:31:07 -4286.935864] SLOW spr round 11 (radius: 5)
[00:31:13 -4286.933606] SLOW spr round 12 (radius: 10)
[00:31:19 -4286.933492] SLOW spr round 13 (radius: 15)
[00:31:28 -4286.933480] SLOW spr round 14 (radius: 20)
[00:31:37 -4284.014748] SLOW spr round 15 (radius: 5)
[00:31:45 -4283.071111] SLOW spr round 16 (radius: 5)
[00:31:51 -4282.448929] SLOW spr round 17 (radius: 5)
[00:31:57 -4282.448474] SLOW spr round 18 (radius: 10)
[00:32:02 -4282.429618] SLOW spr round 19 (radius: 15)
[00:32:11 -4282.429286] SLOW spr round 20 (radius: 20)
[00:32:22 -4282.168399] SLOW spr round 21 (radius: 5)
[00:32:29 -4280.613416] SLOW spr round 22 (radius: 5)
[00:32:35 -4280.602965] SLOW spr round 23 (radius: 10)
[00:32:41 -4280.432180] SLOW spr round 24 (radius: 5)
[00:32:48 -4280.431562] SLOW spr round 25 (radius: 10)
[00:32:54 -4280.431301] SLOW spr round 26 (radius: 15)
[00:33:02 -4280.315841] SLOW spr round 27 (radius: 5)
[00:33:10 -4278.902719] SLOW spr round 28 (radius: 5)
[00:33:16 -4278.902227] SLOW spr round 29 (radius: 10)
[00:33:21 -4278.902168] SLOW spr round 30 (radius: 15)
[00:33:30 -4278.902152] SLOW spr round 31 (radius: 20)
[00:33:40 -4278.880780] SLOW spr round 32 (radius: 25)
[00:33:50 -4278.707830] SLOW spr round 33 (radius: 5)
[00:33:57 -4277.684350] SLOW spr round 34 (radius: 5)
[00:34:03 -4277.684349] SLOW spr round 35 (radius: 10)
[00:34:09 -4277.684349] SLOW spr round 36 (radius: 15)
[00:34:18 -4277.684349] SLOW spr round 37 (radius: 20)
[00:34:28 -4277.549420] SLOW spr round 38 (radius: 5)
[00:34:36 -4275.144793] SLOW spr round 39 (radius: 5)
[00:34:42 -4275.141941] SLOW spr round 40 (radius: 10)
[00:34:48 -4275.141939] SLOW spr round 41 (radius: 15)
[00:34:57 -4275.141939] SLOW spr round 42 (radius: 20)
[00:35:07 -4275.141939] SLOW spr round 43 (radius: 25)
[00:35:16 -4275.141939] Model parameter optimization (eps = 0.100000)

[00:35:17] ML tree search #5, logLikelihood: -4274.768965

[00:35:18 -8604.529260] Initial branch length optimization
[00:35:18 -7339.312876] Model parameter optimization (eps = 10.000000)
[00:35:23 -7040.426619] AUTODETECT spr round 1 (radius: 5)
[00:35:27 -5792.710493] AUTODETECT spr round 2 (radius: 10)
[00:35:31 -5051.200693] AUTODETECT spr round 3 (radius: 15)
[00:35:37 -4779.697282] AUTODETECT spr round 4 (radius: 20)
[00:35:43 -4667.947477] AUTODETECT spr round 5 (radius: 25)
[00:35:50 -4589.846770] SPR radius for FAST iterations: 25 (autodetect)
[00:35:50 -4589.846770] Model parameter optimization (eps = 3.000000)
[00:35:52 -4586.571231] FAST spr round 1 (radius: 25)
[00:35:57 -4345.605817] FAST spr round 2 (radius: 25)
[00:36:01 -4317.296202] FAST spr round 3 (radius: 25)
[00:36:05 -4311.815048] FAST spr round 4 (radius: 25)
[00:36:09 -4311.548344] FAST spr round 5 (radius: 25)
[00:36:12 -4311.547654] Model parameter optimization (eps = 1.000000)
[00:36:15 -4310.307704] SLOW spr round 1 (radius: 5)
[00:36:21 -4309.285965] SLOW spr round 2 (radius: 5)
[00:36:27 -4309.034337] SLOW spr round 3 (radius: 5)
[00:36:32 -4308.798099] SLOW spr round 4 (radius: 5)
[00:36:38 -4308.752079] SLOW spr round 5 (radius: 10)
[00:36:43 -4307.803447] SLOW spr round 6 (radius: 5)
[00:36:50 -4307.803198] SLOW spr round 7 (radius: 10)
[00:36:56 -4307.803139] SLOW spr round 8 (radius: 15)
[00:37:06 -4297.359535] SLOW spr round 9 (radius: 5)
[00:37:14 -4296.742072] SLOW spr round 10 (radius: 5)
[00:37:20 -4296.741629] SLOW spr round 11 (radius: 10)
[00:37:26 -4296.741619] SLOW spr round 12 (radius: 15)
[00:37:36 -4296.213861] SLOW spr round 13 (radius: 5)
[00:37:44 -4295.885058] SLOW spr round 14 (radius: 5)
[00:37:50 -4295.884905] SLOW spr round 15 (radius: 10)
[00:37:56 -4295.884893] SLOW spr round 16 (radius: 15)
[00:38:06 -4295.534205] SLOW spr round 17 (radius: 5)
[00:38:14 -4294.422900] SLOW spr round 18 (radius: 5)
[00:38:20 -4294.312928] SLOW spr round 19 (radius: 5)
[00:38:26 -4294.311153] SLOW spr round 20 (radius: 10)
[00:38:31 -4294.310972] SLOW spr round 21 (radius: 15)
[00:38:42 -4294.229045] SLOW spr round 22 (radius: 20)
[00:38:53 -4291.251417] SLOW spr round 23 (radius: 5)
[00:39:01 -4288.964793] SLOW spr round 24 (radius: 5)
[00:39:07 -4288.875419] SLOW spr round 25 (radius: 10)
[00:39:13 -4288.447768] SLOW spr round 26 (radius: 5)
[00:39:20 -4288.008125] SLOW spr round 27 (radius: 5)
[00:39:26 -4288.008094] SLOW spr round 28 (radius: 10)
[00:39:32 -4288.008094] SLOW spr round 29 (radius: 15)
[00:39:42 -4287.952716] SLOW spr round 30 (radius: 20)
[00:39:53 -4286.904066] SLOW spr round 31 (radius: 5)
[00:40:01 -4285.998926] SLOW spr round 32 (radius: 5)
[00:40:07 -4285.998739] SLOW spr round 33 (radius: 10)
[00:40:13 -4284.318677] SLOW spr round 34 (radius: 5)
[00:40:20 -4282.762293] SLOW spr round 35 (radius: 5)
[00:40:26 -4282.648291] SLOW spr round 36 (radius: 5)
[00:40:32 -4282.623038] SLOW spr round 37 (radius: 10)
[00:40:37 -4282.622871] SLOW spr round 38 (radius: 15)
[00:40:48 -4282.260904] SLOW spr round 39 (radius: 5)
[00:40:55 -4282.260822] SLOW spr round 40 (radius: 10)
[00:41:01 -4282.260821] SLOW spr round 41 (radius: 15)
[00:41:11 -4282.260821] SLOW spr round 42 (radius: 20)
[00:41:22 -4280.675356] SLOW spr round 43 (radius: 5)
[00:41:30 -4278.339824] SLOW spr round 44 (radius: 5)
[00:41:36 -4277.920137] SLOW spr round 45 (radius: 5)
[00:41:42 -4277.919506] SLOW spr round 46 (radius: 10)
[00:41:47 -4277.919506] SLOW spr round 47 (radius: 15)
[00:41:58 -4277.919506] SLOW spr round 48 (radius: 20)
[00:42:08 -4276.842831] SLOW spr round 49 (radius: 5)
[00:42:16 -4275.952806] SLOW spr round 50 (radius: 5)
[00:42:22 -4275.935954] SLOW spr round 51 (radius: 10)
[00:42:28 -4272.398854] SLOW spr round 52 (radius: 5)
[00:42:36 -4270.770725] SLOW spr round 53 (radius: 5)
[00:42:42 -4270.770699] SLOW spr round 54 (radius: 10)
[00:42:47 -4270.565517] SLOW spr round 55 (radius: 5)
[00:42:54 -4270.556811] SLOW spr round 56 (radius: 10)
[00:43:00 -4270.556610] SLOW spr round 57 (radius: 15)
[00:43:10 -4270.556608] SLOW spr round 58 (radius: 20)
[00:43:20 -4270.156514] SLOW spr round 59 (radius: 5)
[00:43:28 -4270.156402] SLOW spr round 60 (radius: 10)
[00:43:34 -4270.156393] SLOW spr round 61 (radius: 15)
[00:43:44 -4270.156392] SLOW spr round 62 (radius: 20)
[00:43:54 -4270.156392] SLOW spr round 63 (radius: 25)
[00:44:03 -4270.062752] Model parameter optimization (eps = 0.100000)

[00:44:05] ML tree search #6, logLikelihood: -4268.812713

[00:44:05 -8682.456460] Initial branch length optimization
[00:44:05 -7362.772351] Model parameter optimization (eps = 10.000000)
[00:44:09 -7052.828993] AUTODETECT spr round 1 (radius: 5)
[00:44:13 -5829.550691] AUTODETECT spr round 2 (radius: 10)
[00:44:18 -5174.017921] AUTODETECT spr round 3 (radius: 15)
[00:44:23 -4722.264985] AUTODETECT spr round 4 (radius: 20)
[00:44:29 -4671.939776] AUTODETECT spr round 5 (radius: 25)
[00:44:34 -4646.984236] SPR radius for FAST iterations: 25 (autodetect)
[00:44:34 -4646.984236] Model parameter optimization (eps = 3.000000)
[00:44:35 -4646.571121] FAST spr round 1 (radius: 25)
[00:44:39 -4361.727070] FAST spr round 2 (radius: 25)
[00:44:43 -4331.376013] FAST spr round 3 (radius: 25)
[00:44:47 -4325.485791] FAST spr round 4 (radius: 25)
[00:44:51 -4309.936359] FAST spr round 5 (radius: 25)
[00:44:55 -4302.616912] FAST spr round 6 (radius: 25)
[00:44:59 -4297.177585] FAST spr round 7 (radius: 25)
[00:45:03 -4295.134755] FAST spr round 8 (radius: 25)
[00:45:06 -4295.134006] Model parameter optimization (eps = 1.000000)
[00:45:09 -4293.469243] SLOW spr round 1 (radius: 5)
[00:45:14 -4290.382473] SLOW spr round 2 (radius: 5)
[00:45:20 -4290.381675] SLOW spr round 3 (radius: 10)
[00:45:26 -4287.357621] SLOW spr round 4 (radius: 5)
[00:45:33 -4287.108475] SLOW spr round 5 (radius: 5)
[00:45:39 -4287.108339] SLOW spr round 6 (radius: 10)
[00:45:45 -4283.393848] SLOW spr round 7 (radius: 5)
[00:45:52 -4282.768063] SLOW spr round 8 (radius: 5)
[00:45:58 -4282.767357] SLOW spr round 9 (radius: 10)
[00:46:03 -4282.767352] SLOW spr round 10 (radius: 15)
[00:46:13 -4281.597080] SLOW spr round 11 (radius: 5)
[00:46:20 -4281.365981] SLOW spr round 12 (radius: 5)
[00:46:26 -4281.365935] SLOW spr round 13 (radius: 10)
[00:46:32 -4281.365935] SLOW spr round 14 (radius: 15)
[00:46:42 -4281.109445] SLOW spr round 15 (radius: 5)
[00:46:49 -4281.109346] SLOW spr round 16 (radius: 10)
[00:46:55 -4281.109345] SLOW spr round 17 (radius: 15)
[00:47:05 -4280.873528] SLOW spr round 18 (radius: 5)
[00:47:12 -4280.711300] SLOW spr round 19 (radius: 5)
[00:47:19 -4278.799491] SLOW spr round 20 (radius: 5)
[00:47:24 -4278.799422] SLOW spr round 21 (radius: 10)
[00:47:30 -4278.372244] SLOW spr round 22 (radius: 5)
[00:47:37 -4278.371759] SLOW spr round 23 (radius: 10)
[00:47:43 -4276.333546] SLOW spr round 24 (radius: 5)
[00:47:50 -4276.078496] SLOW spr round 25 (radius: 5)
[00:47:56 -4275.937707] SLOW spr round 26 (radius: 5)
[00:48:01 -4275.937569] SLOW spr round 27 (radius: 10)
[00:48:06 -4275.937568] SLOW spr round 28 (radius: 15)
[00:48:16 -4275.917881] SLOW spr round 29 (radius: 20)
[00:48:28 -4260.802416] SLOW spr round 30 (radius: 5)
[00:48:35 -4260.190311] SLOW spr round 31 (radius: 5)
[00:48:41 -4260.190200] SLOW spr round 32 (radius: 10)
[00:48:47 -4260.190198] SLOW spr round 33 (radius: 15)
[00:48:57 -4259.256719] SLOW spr round 34 (radius: 5)
[00:49:04 -4259.256581] SLOW spr round 35 (radius: 10)
[00:49:10 -4259.256580] SLOW spr round 36 (radius: 15)
[00:49:19 -4259.256580] SLOW spr round 37 (radius: 20)
[00:49:31 -4259.221733] SLOW spr round 38 (radius: 25)
[00:49:41 -4257.421998] SLOW spr round 39 (radius: 5)
[00:49:49 -4257.210742] SLOW spr round 40 (radius: 5)
[00:49:55 -4257.208273] SLOW spr round 41 (radius: 10)
[00:50:01 -4257.207899] SLOW spr round 42 (radius: 15)
[00:50:10 -4257.207892] SLOW spr round 43 (radius: 20)
[00:50:22 -4256.949524] SLOW spr round 44 (radius: 5)
[00:50:29 -4256.947202] SLOW spr round 45 (radius: 10)
[00:50:36 -4256.039489] SLOW spr round 46 (radius: 5)
[00:50:43 -4256.039465] SLOW spr round 47 (radius: 10)
[00:50:49 -4256.039464] SLOW spr round 48 (radius: 15)
[00:50:59 -4256.039464] SLOW spr round 49 (radius: 20)
[00:51:10 -4256.039464] SLOW spr round 50 (radius: 25)
[00:51:20 -4256.039464] Model parameter optimization (eps = 0.100000)

[00:51:22] ML tree search #7, logLikelihood: -4255.262888

[00:51:22 -8648.939017] Initial branch length optimization
[00:51:22 -7376.140744] Model parameter optimization (eps = 10.000000)
[00:51:29 -7031.462729] AUTODETECT spr round 1 (radius: 5)
[00:51:32 -5838.298106] AUTODETECT spr round 2 (radius: 10)
[00:51:37 -5187.210130] AUTODETECT spr round 3 (radius: 15)
[00:51:43 -4986.443130] AUTODETECT spr round 4 (radius: 20)
[00:51:49 -4782.389178] AUTODETECT spr round 5 (radius: 25)
[00:51:55 -4683.272073] SPR radius for FAST iterations: 25 (autodetect)
[00:51:55 -4683.272073] Model parameter optimization (eps = 3.000000)
[00:51:58 -4671.304660] FAST spr round 1 (radius: 25)
[00:52:03 -4379.047612] FAST spr round 2 (radius: 25)
[00:52:07 -4334.819665] FAST spr round 3 (radius: 25)
[00:52:11 -4331.765797] FAST spr round 4 (radius: 25)
[00:52:15 -4328.863201] FAST spr round 5 (radius: 25)
[00:52:19 -4328.712868] FAST spr round 6 (radius: 25)
[00:52:22 -4324.892860] FAST spr round 7 (radius: 25)
[00:52:26 -4324.892781] Model parameter optimization (eps = 1.000000)
[00:52:29 -4323.751308] SLOW spr round 1 (radius: 5)
[00:52:35 -4321.696200] SLOW spr round 2 (radius: 5)
[00:52:41 -4319.641015] SLOW spr round 3 (radius: 5)
[00:52:46 -4318.121336] SLOW spr round 4 (radius: 5)
[00:52:52 -4317.860088] SLOW spr round 5 (radius: 5)
[00:52:57 -4317.859830] SLOW spr round 6 (radius: 10)
[00:53:03 -4317.694392] SLOW spr round 7 (radius: 5)
[00:53:10 -4314.953774] SLOW spr round 8 (radius: 5)
[00:53:16 -4314.953723] SLOW spr round 9 (radius: 10)
[00:53:22 -4314.612091] SLOW spr round 10 (radius: 5)
[00:53:29 -4314.610865] SLOW spr round 11 (radius: 10)
[00:53:36 -4314.105523] SLOW spr round 12 (radius: 5)
[00:53:43 -4313.452820] SLOW spr round 13 (radius: 5)
[00:53:49 -4313.452808] SLOW spr round 14 (radius: 10)
[00:53:55 -4313.039424] SLOW spr round 15 (radius: 5)
[00:54:02 -4313.039423] SLOW spr round 16 (radius: 10)
[00:54:09 -4313.039423] SLOW spr round 17 (radius: 15)
[00:54:21 -4306.888913] SLOW spr round 18 (radius: 5)
[00:54:28 -4306.374372] SLOW spr round 19 (radius: 5)
[00:54:35 -4306.373536] SLOW spr round 20 (radius: 10)
[00:54:41 -4305.584782] SLOW spr round 21 (radius: 5)
[00:54:48 -4305.533604] SLOW spr round 22 (radius: 10)
[00:54:55 -4305.532360] SLOW spr round 23 (radius: 15)
[00:55:06 -4305.171659] SLOW spr round 24 (radius: 5)
[00:55:14 -4305.071381] SLOW spr round 25 (radius: 5)
[00:55:20 -4305.065007] SLOW spr round 26 (radius: 10)
[00:55:26 -4305.064352] SLOW spr round 27 (radius: 15)
[00:55:38 -4304.943504] SLOW spr round 28 (radius: 5)
[00:55:45 -4304.943422] SLOW spr round 29 (radius: 10)
[00:55:52 -4304.943422] SLOW spr round 30 (radius: 15)
[00:56:03 -4304.838660] SLOW spr round 31 (radius: 5)
[00:56:11 -4304.385332] SLOW spr round 32 (radius: 5)
[00:56:17 -4304.385171] SLOW spr round 33 (radius: 10)
[00:56:23 -4304.385159] SLOW spr round 34 (radius: 15)
[00:56:35 -4304.265656] SLOW spr round 35 (radius: 5)
[00:56:43 -4304.104239] SLOW spr round 36 (radius: 5)
[00:56:49 -4304.104239] SLOW spr round 37 (radius: 10)
[00:56:55 -4304.104239] SLOW spr round 38 (radius: 15)
[00:57:06 -4304.104239] SLOW spr round 39 (radius: 20)
[00:57:19 -4303.319301] SLOW spr round 40 (radius: 5)
[00:57:27 -4302.201394] SLOW spr round 41 (radius: 5)
[00:57:33 -4302.200672] SLOW spr round 42 (radius: 10)
[00:57:39 -4302.200627] SLOW spr round 43 (radius: 15)
[00:57:51 -4301.478996] SLOW spr round 44 (radius: 5)
[00:57:58 -4301.478977] SLOW spr round 45 (radius: 10)
[00:58:05 -4301.478975] SLOW spr round 46 (radius: 15)
[00:58:16 -4301.478974] SLOW spr round 47 (radius: 20)
[00:58:28 -4301.478974] SLOW spr round 48 (radius: 25)
[00:58:38 -4296.430863] SLOW spr round 49 (radius: 5)
[00:58:46 -4296.429024] SLOW spr round 50 (radius: 10)
[00:58:53 -4296.428981] SLOW spr round 51 (radius: 15)
[00:59:04 -4296.428976] SLOW spr round 52 (radius: 20)
[00:59:16 -4296.428975] SLOW spr round 53 (radius: 25)
[00:59:25 -4296.361724] Model parameter optimization (eps = 0.100000)

[00:59:30] ML tree search #8, logLikelihood: -4288.180908

[00:59:30 -8654.827376] Initial branch length optimization
[00:59:30 -7388.747269] Model parameter optimization (eps = 10.000000)
[00:59:35 -7083.723161] AUTODETECT spr round 1 (radius: 5)
[00:59:39 -5823.679777] AUTODETECT spr round 2 (radius: 10)
[00:59:44 -4901.211084] AUTODETECT spr round 3 (radius: 15)
[00:59:50 -4649.027945] AUTODETECT spr round 4 (radius: 20)
[00:59:56 -4583.341336] AUTODETECT spr round 5 (radius: 25)
[01:00:02 -4532.698471] SPR radius for FAST iterations: 25 (autodetect)
[01:00:02 -4532.698471] Model parameter optimization (eps = 3.000000)
[01:00:05 -4529.284631] FAST spr round 1 (radius: 25)
[01:00:10 -4330.213834] FAST spr round 2 (radius: 25)
[01:00:14 -4299.280208] FAST spr round 3 (radius: 25)
[01:00:18 -4297.433638] FAST spr round 4 (radius: 25)
[01:00:22 -4290.333902] FAST spr round 5 (radius: 25)
[01:00:25 -4290.333623] Model parameter optimization (eps = 1.000000)
[01:00:27 -4289.363593] SLOW spr round 1 (radius: 5)
[01:00:33 -4286.731915] SLOW spr round 2 (radius: 5)
[01:00:39 -4285.124330] SLOW spr round 3 (radius: 5)
[01:00:45 -4282.733782] SLOW spr round 4 (radius: 5)
[01:00:50 -4281.766098] SLOW spr round 5 (radius: 5)
[01:00:56 -4281.705393] SLOW spr round 6 (radius: 10)
[01:01:01 -4281.705319] SLOW spr round 7 (radius: 15)
[01:01:11 -4275.834031] SLOW spr round 8 (radius: 5)
[01:01:19 -4273.708383] SLOW spr round 9 (radius: 5)
[01:01:25 -4273.706860] SLOW spr round 10 (radius: 10)
[01:01:30 -4273.706842] SLOW spr round 11 (radius: 15)
[01:01:39 -4273.485883] SLOW spr round 12 (radius: 5)
[01:01:47 -4273.060960] SLOW spr round 13 (radius: 5)
[01:01:53 -4273.059993] SLOW spr round 14 (radius: 10)
[01:01:58 -4273.059983] SLOW spr round 15 (radius: 15)
[01:02:07 -4273.059983] SLOW spr round 16 (radius: 20)
[01:02:19 -4263.832405] SLOW spr round 17 (radius: 5)
[01:02:26 -4260.437021] SLOW spr round 18 (radius: 5)
[01:02:33 -4260.437012] SLOW spr round 19 (radius: 10)
[01:02:38 -4260.437012] SLOW spr round 20 (radius: 15)
[01:02:47 -4260.437012] SLOW spr round 21 (radius: 20)
[01:02:59 -4260.437012] SLOW spr round 22 (radius: 25)
[01:03:09 -4259.372214] SLOW spr round 23 (radius: 5)
[01:03:16 -4259.372130] SLOW spr round 24 (radius: 10)
[01:03:23 -4259.372128] SLOW spr round 25 (radius: 15)
[01:03:32 -4259.372128] SLOW spr round 26 (radius: 20)
[01:03:43 -4259.372128] SLOW spr round 27 (radius: 25)
[01:03:53 -4259.372128] Model parameter optimization (eps = 0.100000)

[01:03:54] ML tree search #9, logLikelihood: -4259.193863

[01:03:54 -8749.238792] Initial branch length optimization
[01:03:54 -7152.562470] Model parameter optimization (eps = 10.000000)
[01:03:59 -7085.302030] AUTODETECT spr round 1 (radius: 5)
[01:04:03 -5908.073146] AUTODETECT spr round 2 (radius: 10)
[01:04:07 -5150.618761] AUTODETECT spr round 3 (radius: 15)
[01:04:13 -4831.079566] AUTODETECT spr round 4 (radius: 20)
[01:04:21 -4632.576615] AUTODETECT spr round 5 (radius: 25)
[01:04:27 -4558.585796] SPR radius for FAST iterations: 25 (autodetect)
[01:04:27 -4558.585796] Model parameter optimization (eps = 3.000000)
[01:04:30 -4550.760586] FAST spr round 1 (radius: 25)
[01:04:35 -4362.767258] FAST spr round 2 (radius: 25)
[01:04:39 -4339.895178] FAST spr round 3 (radius: 25)
[01:04:44 -4329.126216] FAST spr round 4 (radius: 25)
[01:04:47 -4328.296073] FAST spr round 5 (radius: 25)
[01:04:51 -4328.295164] Model parameter optimization (eps = 1.000000)
[01:04:53 -4327.272547] SLOW spr round 1 (radius: 5)
[01:04:59 -4326.130344] SLOW spr round 2 (radius: 5)
[01:05:05 -4326.129260] SLOW spr round 3 (radius: 10)
[01:05:10 -4325.321244] SLOW spr round 4 (radius: 5)
[01:05:17 -4325.321176] SLOW spr round 5 (radius: 10)
[01:05:23 -4325.321172] SLOW spr round 6 (radius: 15)
[01:05:33 -4324.197417] SLOW spr round 7 (radius: 5)
[01:05:40 -4320.179673] SLOW spr round 8 (radius: 5)
[01:05:46 -4320.179512] SLOW spr round 9 (radius: 10)
[01:05:52 -4320.179500] SLOW spr round 10 (radius: 15)
[01:06:01 -4318.988364] SLOW spr round 11 (radius: 5)
[01:06:08 -4317.407221] SLOW spr round 12 (radius: 5)
[01:06:15 -4317.407022] SLOW spr round 13 (radius: 10)
[01:06:20 -4317.407012] SLOW spr round 14 (radius: 15)
[01:06:30 -4315.758012] SLOW spr round 15 (radius: 5)
[01:06:37 -4315.559320] SLOW spr round 16 (radius: 5)
[01:06:44 -4310.145574] SLOW spr round 17 (radius: 5)
[01:06:50 -4309.788859] SLOW spr round 18 (radius: 5)
[01:06:55 -4309.787945] SLOW spr round 19 (radius: 10)
[01:07:00 -4309.787542] SLOW spr round 20 (radius: 15)
[01:07:10 -4309.102864] SLOW spr round 21 (radius: 5)
[01:07:17 -4309.101951] SLOW spr round 22 (radius: 10)
[01:07:23 -4309.101855] SLOW spr round 23 (radius: 15)
[01:07:32 -4308.706950] SLOW spr round 24 (radius: 5)
[01:07:40 -4307.676112] SLOW spr round 25 (radius: 5)
[01:07:46 -4307.675938] SLOW spr round 26 (radius: 10)
[01:07:51 -4307.675935] SLOW spr round 27 (radius: 15)
[01:08:01 -4307.383788] SLOW spr round 28 (radius: 5)
[01:08:08 -4307.383786] SLOW spr round 29 (radius: 10)
[01:08:14 -4305.268871] SLOW spr round 30 (radius: 5)
[01:08:21 -4305.268871] SLOW spr round 31 (radius: 10)
[01:08:27 -4305.268871] SLOW spr round 32 (radius: 15)
[01:08:35 -4305.268871] SLOW spr round 33 (radius: 20)
[01:08:47 -4302.025860] SLOW spr round 34 (radius: 5)
[01:08:54 -4301.662794] SLOW spr round 35 (radius: 5)
[01:09:01 -4301.660241] SLOW spr round 36 (radius: 10)
[01:09:06 -4301.660048] SLOW spr round 37 (radius: 15)
[01:09:16 -4297.467726] SLOW spr round 38 (radius: 5)
[01:09:23 -4297.451252] SLOW spr round 39 (radius: 10)
[01:09:29 -4296.926778] SLOW spr round 40 (radius: 5)
[01:09:36 -4296.926550] SLOW spr round 41 (radius: 10)
[01:09:42 -4296.926547] SLOW spr round 42 (radius: 15)
[01:09:51 -4296.926547] SLOW spr round 43 (radius: 20)
[01:10:02 -4296.597368] SLOW spr round 44 (radius: 5)
[01:10:09 -4296.597277] SLOW spr round 45 (radius: 10)
[01:10:16 -4296.597227] SLOW spr round 46 (radius: 15)
[01:10:25 -4296.597199] SLOW spr round 47 (radius: 20)
[01:10:36 -4296.597184] SLOW spr round 48 (radius: 25)
[01:10:46 -4296.597175] Model parameter optimization (eps = 0.100000)

[01:10:51] ML tree search #10, logLikelihood: -4289.934996

[01:10:51 -8685.526436] Initial branch length optimization
[01:10:51 -7361.303068] Model parameter optimization (eps = 10.000000)
[01:10:55 -7034.756015] AUTODETECT spr round 1 (radius: 5)
[01:10:59 -5781.157708] AUTODETECT spr round 2 (radius: 10)
[01:11:04 -5006.021197] AUTODETECT spr round 3 (radius: 15)
[01:11:09 -4790.998112] AUTODETECT spr round 4 (radius: 20)
[01:11:15 -4705.629830] AUTODETECT spr round 5 (radius: 25)
[01:11:21 -4661.348875] SPR radius for FAST iterations: 25 (autodetect)
[01:11:21 -4661.348875] Model parameter optimization (eps = 3.000000)
[01:11:23 -4659.769399] FAST spr round 1 (radius: 25)
[01:11:28 -4385.883467] FAST spr round 2 (radius: 25)
[01:11:32 -4346.191170] FAST spr round 3 (radius: 25)
[01:11:37 -4339.238840] FAST spr round 4 (radius: 25)
[01:11:41 -4326.502743] FAST spr round 5 (radius: 25)
[01:11:44 -4323.857727] FAST spr round 6 (radius: 25)
[01:11:48 -4319.815121] FAST spr round 7 (radius: 25)
[01:11:51 -4319.814690] Model parameter optimization (eps = 1.000000)
[01:11:55 -4316.764332] SLOW spr round 1 (radius: 5)
[01:12:00 -4313.686181] SLOW spr round 2 (radius: 5)
[01:12:06 -4310.328204] SLOW spr round 3 (radius: 5)
[01:12:12 -4308.107733] SLOW spr round 4 (radius: 5)
[01:12:17 -4308.105258] SLOW spr round 5 (radius: 10)
[01:12:22 -4308.105143] SLOW spr round 6 (radius: 15)
[01:12:32 -4301.501601] SLOW spr round 7 (radius: 5)
[01:12:40 -4300.610574] SLOW spr round 8 (radius: 5)
[01:12:46 -4300.610532] SLOW spr round 9 (radius: 10)
[01:12:51 -4300.610531] SLOW spr round 10 (radius: 15)
[01:13:00 -4300.508029] SLOW spr round 11 (radius: 5)
[01:13:07 -4300.508025] SLOW spr round 12 (radius: 10)
[01:13:13 -4299.651711] SLOW spr round 13 (radius: 5)
[01:13:20 -4299.651705] SLOW spr round 14 (radius: 10)
[01:13:25 -4299.651705] SLOW spr round 15 (radius: 15)
[01:13:34 -4299.651705] SLOW spr round 16 (radius: 20)
[01:13:45 -4299.478005] SLOW spr round 17 (radius: 5)
[01:13:52 -4272.107740] SLOW spr round 18 (radius: 5)
[01:13:59 -4272.107118] SLOW spr round 19 (radius: 10)
[01:14:04 -4272.107118] SLOW spr round 20 (radius: 15)
[01:14:13 -4269.698281] SLOW spr round 21 (radius: 5)
[01:14:20 -4269.698144] SLOW spr round 22 (radius: 10)
[01:14:26 -4269.698143] SLOW spr round 23 (radius: 15)
[01:14:35 -4269.698143] SLOW spr round 24 (radius: 20)
[01:14:45 -4269.698143] SLOW spr round 25 (radius: 25)
[01:14:56 -4269.418723] SLOW spr round 26 (radius: 5)
[01:15:03 -4269.376609] SLOW spr round 27 (radius: 10)
[01:15:09 -4269.374369] SLOW spr round 28 (radius: 15)
[01:15:18 -4269.333252] SLOW spr round 29 (radius: 20)
[01:15:28 -4269.332991] SLOW spr round 30 (radius: 25)
[01:15:37 -4265.805056] SLOW spr round 31 (radius: 5)
[01:15:45 -4263.449566] SLOW spr round 32 (radius: 5)
[01:15:51 -4263.449186] SLOW spr round 33 (radius: 10)
[01:15:57 -4263.449087] SLOW spr round 34 (radius: 15)
[01:16:05 -4263.449041] SLOW spr round 35 (radius: 20)
[01:16:15 -4263.449018] SLOW spr round 36 (radius: 25)
[01:16:25 -4263.449006] Model parameter optimization (eps = 0.100000)

[01:16:27] ML tree search #11, logLikelihood: -4262.970827

[01:16:27 -8635.294452] Initial branch length optimization
[01:16:27 -7412.127230] Model parameter optimization (eps = 10.000000)
[01:16:34 -7106.389391] AUTODETECT spr round 1 (radius: 5)
[01:16:37 -5933.001546] AUTODETECT spr round 2 (radius: 10)
[01:16:42 -5134.060508] AUTODETECT spr round 3 (radius: 15)
[01:16:48 -4737.569522] AUTODETECT spr round 4 (radius: 20)
[01:16:53 -4637.186551] AUTODETECT spr round 5 (radius: 25)
[01:16:59 -4599.317195] SPR radius for FAST iterations: 25 (autodetect)
[01:16:59 -4599.317195] Model parameter optimization (eps = 3.000000)
[01:17:01 -4592.637970] FAST spr round 1 (radius: 25)
[01:17:06 -4400.415442] FAST spr round 2 (radius: 25)
[01:17:10 -4364.446270] FAST spr round 3 (radius: 25)
[01:17:14 -4354.271105] FAST spr round 4 (radius: 25)
[01:17:17 -4354.159310] FAST spr round 5 (radius: 25)
[01:17:21 -4354.159283] Model parameter optimization (eps = 1.000000)
[01:17:23 -4352.467426] SLOW spr round 1 (radius: 5)
[01:17:29 -4351.629486] SLOW spr round 2 (radius: 5)
[01:17:35 -4350.200555] SLOW spr round 3 (radius: 5)
[01:17:40 -4350.199780] SLOW spr round 4 (radius: 10)
[01:17:45 -4348.860402] SLOW spr round 5 (radius: 5)
[01:17:51 -4348.860149] SLOW spr round 6 (radius: 10)
[01:17:57 -4348.860135] SLOW spr round 7 (radius: 15)
[01:18:06 -4346.045688] SLOW spr round 8 (radius: 5)
[01:18:13 -4346.042219] SLOW spr round 9 (radius: 10)
[01:18:19 -4345.726000] SLOW spr round 10 (radius: 5)
[01:18:25 -4345.725848] SLOW spr round 11 (radius: 10)
[01:18:31 -4345.725844] SLOW spr round 12 (radius: 15)
[01:18:39 -4345.340833] SLOW spr round 13 (radius: 5)
[01:18:46 -4334.280444] SLOW spr round 14 (radius: 5)
[01:18:52 -4334.280073] SLOW spr round 15 (radius: 10)
[01:18:57 -4334.280029] SLOW spr round 16 (radius: 15)
[01:19:05 -4333.919901] SLOW spr round 17 (radius: 5)
[01:19:12 -4333.917927] SLOW spr round 18 (radius: 10)
[01:19:18 -4333.917853] SLOW spr round 19 (radius: 15)
[01:19:26 -4333.797186] SLOW spr round 20 (radius: 5)
[01:19:33 -4333.093019] SLOW spr round 21 (radius: 5)
[01:19:39 -4333.092932] SLOW spr round 22 (radius: 10)
[01:19:44 -4333.092930] SLOW spr round 23 (radius: 15)
[01:19:53 -4333.092929] SLOW spr round 24 (radius: 20)
[01:20:03 -4330.576558] SLOW spr round 25 (radius: 5)
[01:20:10 -4330.040781] SLOW spr round 26 (radius: 5)
[01:20:16 -4329.984517] SLOW spr round 27 (radius: 10)
[01:20:21 -4329.983315] SLOW spr round 28 (radius: 15)
[01:20:30 -4329.983256] SLOW spr round 29 (radius: 20)
[01:20:39 -4329.660269] SLOW spr round 30 (radius: 5)
[01:20:46 -4329.659792] SLOW spr round 31 (radius: 10)
[01:20:52 -4329.659678] SLOW spr round 32 (radius: 15)
[01:21:00 -4329.659644] SLOW spr round 33 (radius: 20)
[01:21:09 -4329.659635] SLOW spr round 34 (radius: 25)
[01:21:19 -4329.044117] SLOW spr round 35 (radius: 5)
[01:21:26 -4329.043831] SLOW spr round 36 (radius: 10)
[01:21:32 -4329.043826] SLOW spr round 37 (radius: 15)
[01:21:39 -4329.043825] SLOW spr round 38 (radius: 20)
[01:21:49 -4329.043825] SLOW spr round 39 (radius: 25)
[01:21:58 -4329.043825] Model parameter optimization (eps = 0.100000)

[01:22:00] ML tree search #12, logLikelihood: -4328.818694

[01:22:00 -8655.212118] Initial branch length optimization
[01:22:00 -7385.388021] Model parameter optimization (eps = 10.000000)
[01:22:05 -7095.615562] AUTODETECT spr round 1 (radius: 5)
[01:22:08 -5772.487804] AUTODETECT spr round 2 (radius: 10)
[01:22:13 -5147.298416] AUTODETECT spr round 3 (radius: 15)
[01:22:19 -4783.192080] AUTODETECT spr round 4 (radius: 20)
[01:22:24 -4640.939713] AUTODETECT spr round 5 (radius: 25)
[01:22:30 -4606.917789] SPR radius for FAST iterations: 25 (autodetect)
[01:22:30 -4606.917789] Model parameter optimization (eps = 3.000000)
[01:22:33 -4603.627570] FAST spr round 1 (radius: 25)
[01:22:38 -4342.797132] FAST spr round 2 (radius: 25)
[01:22:42 -4319.370105] FAST spr round 3 (radius: 25)
[01:22:46 -4315.267753] FAST spr round 4 (radius: 25)
[01:22:50 -4307.711509] FAST spr round 5 (radius: 25)
[01:22:54 -4307.458966] FAST spr round 6 (radius: 25)
[01:22:57 -4307.456221] Model parameter optimization (eps = 1.000000)
[01:23:00 -4305.279206] SLOW spr round 1 (radius: 5)
[01:23:06 -4304.873950] SLOW spr round 2 (radius: 5)
[01:23:12 -4304.740498] SLOW spr round 3 (radius: 5)
[01:23:18 -4304.740198] SLOW spr round 4 (radius: 10)
[01:23:23 -4303.940789] SLOW spr round 5 (radius: 5)
[01:23:30 -4303.937114] SLOW spr round 6 (radius: 10)
[01:23:36 -4303.936945] SLOW spr round 7 (radius: 15)
[01:23:48 -4293.605432] SLOW spr round 8 (radius: 5)
[01:23:56 -4290.743190] SLOW spr round 9 (radius: 5)
[01:24:02 -4290.114337] SLOW spr round 10 (radius: 5)
[01:24:08 -4290.114138] SLOW spr round 11 (radius: 10)
[01:24:13 -4289.726885] SLOW spr round 12 (radius: 5)
[01:24:21 -4278.636207] SLOW spr round 13 (radius: 5)
[01:24:27 -4276.911908] SLOW spr round 14 (radius: 5)
[01:24:33 -4276.911371] SLOW spr round 15 (radius: 10)
[01:24:38 -4276.910948] SLOW spr round 16 (radius: 15)
[01:24:50 -4274.934400] SLOW spr round 17 (radius: 5)
[01:24:58 -4273.696861] SLOW spr round 18 (radius: 5)
[01:25:04 -4273.696761] SLOW spr round 19 (radius: 10)
[01:25:10 -4269.812338] SLOW spr round 20 (radius: 5)
[01:25:17 -4269.792721] SLOW spr round 21 (radius: 10)
[01:25:23 -4269.792235] SLOW spr round 22 (radius: 15)
[01:25:34 -4268.656896] SLOW spr round 23 (radius: 5)
[01:25:42 -4268.655851] SLOW spr round 24 (radius: 10)
[01:25:48 -4268.655727] SLOW spr round 25 (radius: 15)
[01:25:59 -4268.655673] SLOW spr round 26 (radius: 20)
[01:26:11 -4267.543067] SLOW spr round 27 (radius: 5)
[01:26:19 -4267.396359] SLOW spr round 28 (radius: 5)
[01:26:25 -4267.396356] SLOW spr round 29 (radius: 10)
[01:26:31 -4267.396356] SLOW spr round 30 (radius: 15)
[01:26:43 -4264.581439] SLOW spr round 31 (radius: 5)
[01:26:50 -4264.581363] SLOW spr round 32 (radius: 10)
[01:26:56 -4264.581341] SLOW spr round 33 (radius: 15)
[01:27:07 -4264.581330] SLOW spr round 34 (radius: 20)
[01:27:19 -4264.581324] SLOW spr round 35 (radius: 25)
[01:27:28 -4264.326267] SLOW spr round 36 (radius: 5)
[01:27:35 -4264.326246] SLOW spr round 37 (radius: 10)
[01:27:42 -4264.326245] SLOW spr round 38 (radius: 15)
[01:27:53 -4264.326244] SLOW spr round 39 (radius: 20)
[01:28:05 -4264.326244] SLOW spr round 40 (radius: 25)
[01:28:14 -4264.326243] Model parameter optimization (eps = 0.100000)

[01:28:16] ML tree search #13, logLikelihood: -4262.519846

[01:28:16 -8677.651208] Initial branch length optimization
[01:28:16 -7115.916314] Model parameter optimization (eps = 10.000000)
[01:28:19 -7071.216311] AUTODETECT spr round 1 (radius: 5)
[01:28:23 -5974.386972] AUTODETECT spr round 2 (radius: 10)
[01:28:28 -5123.164457] AUTODETECT spr round 3 (radius: 15)
[01:28:33 -4709.628450] AUTODETECT spr round 4 (radius: 20)
[01:28:40 -4581.767880] AUTODETECT spr round 5 (radius: 25)
[01:28:46 -4572.676560] SPR radius for FAST iterations: 25 (autodetect)
[01:28:46 -4572.676560] Model parameter optimization (eps = 3.000000)
[01:28:47 -4567.050037] FAST spr round 1 (radius: 25)
[01:28:52 -4411.438845] FAST spr round 2 (radius: 25)
[01:28:56 -4359.250094] FAST spr round 3 (radius: 25)
[01:29:00 -4340.765091] FAST spr round 4 (radius: 25)
[01:29:04 -4336.740218] FAST spr round 5 (radius: 25)
[01:29:08 -4334.926215] FAST spr round 6 (radius: 25)
[01:29:12 -4334.584442] FAST spr round 7 (radius: 25)
[01:29:16 -4329.927477] FAST spr round 8 (radius: 25)
[01:29:19 -4328.647819] FAST spr round 9 (radius: 25)
[01:29:23 -4328.647753] Model parameter optimization (eps = 1.000000)
[01:29:24 -4328.355194] SLOW spr round 1 (radius: 5)
[01:29:30 -4327.881781] SLOW spr round 2 (radius: 5)
[01:29:36 -4327.881421] SLOW spr round 3 (radius: 10)
[01:29:41 -4326.571431] SLOW spr round 4 (radius: 5)
[01:29:49 -4326.161333] SLOW spr round 5 (radius: 5)
[01:29:55 -4326.159653] SLOW spr round 6 (radius: 10)
[01:30:01 -4322.747424] SLOW spr round 7 (radius: 5)
[01:30:08 -4322.745046] SLOW spr round 8 (radius: 10)
[01:30:14 -4322.744839] SLOW spr round 9 (radius: 15)
[01:30:23 -4319.763132] SLOW spr round 10 (radius: 5)
[01:30:31 -4316.435717] SLOW spr round 11 (radius: 5)
[01:30:37 -4316.434538] SLOW spr round 12 (radius: 10)
[01:30:43 -4316.434483] SLOW spr round 13 (radius: 15)
[01:30:52 -4315.978563] SLOW spr round 14 (radius: 5)
[01:30:59 -4315.875131] SLOW spr round 15 (radius: 5)
[01:31:06 -4315.875131] SLOW spr round 16 (radius: 10)
[01:31:11 -4315.875131] SLOW spr round 17 (radius: 15)
[01:31:20 -4315.597826] SLOW spr round 18 (radius: 5)
[01:31:28 -4315.502373] SLOW spr round 19 (radius: 10)
[01:31:34 -4315.502187] SLOW spr round 20 (radius: 15)
[01:31:43 -4313.465975] SLOW spr round 21 (radius: 5)
[01:31:51 -4313.465958] SLOW spr round 22 (radius: 10)
[01:31:57 -4313.465958] SLOW spr round 23 (radius: 15)
[01:32:06 -4313.465958] SLOW spr round 24 (radius: 20)
[01:32:17 -4311.478556] SLOW spr round 25 (radius: 5)
[01:32:25 -4311.477269] SLOW spr round 26 (radius: 10)
[01:32:31 -4311.477254] SLOW spr round 27 (radius: 15)
[01:32:40 -4311.477254] SLOW spr round 28 (radius: 20)
[01:32:51 -4311.477254] SLOW spr round 29 (radius: 25)
[01:33:01 -4309.125485] SLOW spr round 30 (radius: 5)
[01:33:09 -4308.819316] SLOW spr round 31 (radius: 5)
[01:33:16 -4308.819207] SLOW spr round 32 (radius: 10)
[01:33:21 -4308.819207] SLOW spr round 33 (radius: 15)
[01:33:31 -4308.819207] SLOW spr round 34 (radius: 20)
[01:33:41 -4308.819207] SLOW spr round 35 (radius: 25)
[01:33:52 -4308.819207] Model parameter optimization (eps = 0.100000)

[01:33:53] ML tree search #14, logLikelihood: -4307.821428

[01:33:53 -8703.050977] Initial branch length optimization
[01:33:53 -7406.483390] Model parameter optimization (eps = 10.000000)
[01:33:57 -7110.004688] AUTODETECT spr round 1 (radius: 5)
[01:34:01 -5797.285250] AUTODETECT spr round 2 (radius: 10)
[01:34:06 -4966.946141] AUTODETECT spr round 3 (radius: 15)
[01:34:12 -4618.712414] AUTODETECT spr round 4 (radius: 20)
[01:34:18 -4550.019640] AUTODETECT spr round 5 (radius: 25)
[01:34:23 -4546.889196] SPR radius for FAST iterations: 25 (autodetect)
[01:34:23 -4546.889196] Model parameter optimization (eps = 3.000000)
[01:34:25 -4545.116822] FAST spr round 1 (radius: 25)
[01:34:29 -4367.196191] FAST spr round 2 (radius: 25)
[01:34:34 -4332.763286] FAST spr round 3 (radius: 25)
[01:34:38 -4332.052470] FAST spr round 4 (radius: 25)
[01:34:41 -4329.948804] FAST spr round 5 (radius: 25)
[01:34:45 -4329.510672] FAST spr round 6 (radius: 25)
[01:34:49 -4329.510657] Model parameter optimization (eps = 1.000000)
[01:34:50 -4329.046117] SLOW spr round 1 (radius: 5)
[01:34:56 -4328.099736] SLOW spr round 2 (radius: 5)
[01:35:01 -4328.096577] SLOW spr round 3 (radius: 10)
[01:35:06 -4328.054532] SLOW spr round 4 (radius: 15)
[01:35:16 -4325.172430] SLOW spr round 5 (radius: 5)
[01:35:24 -4323.291513] SLOW spr round 6 (radius: 5)
[01:35:30 -4323.086521] SLOW spr round 7 (radius: 5)
[01:35:36 -4323.085633] SLOW spr round 8 (radius: 10)
[01:35:41 -4322.278987] SLOW spr round 9 (radius: 5)
[01:35:48 -4322.277754] SLOW spr round 10 (radius: 10)
[01:35:54 -4321.770309] SLOW spr round 11 (radius: 5)
[01:36:01 -4320.873824] SLOW spr round 12 (radius: 5)
[01:36:07 -4320.871721] SLOW spr round 13 (radius: 10)
[01:36:12 -4317.625520] SLOW spr round 14 (radius: 5)
[01:36:19 -4317.625511] SLOW spr round 15 (radius: 10)
[01:36:25 -4317.405996] SLOW spr round 16 (radius: 5)
[01:36:32 -4317.404916] SLOW spr round 17 (radius: 10)
[01:36:37 -4317.404916] SLOW spr round 18 (radius: 15)
[01:36:47 -4314.612792] SLOW spr round 19 (radius: 5)
[01:36:55 -4314.603987] SLOW spr round 20 (radius: 10)
[01:37:01 -4291.612276] SLOW spr round 21 (radius: 5)
[01:37:07 -4291.612247] SLOW spr round 22 (radius: 10)
[01:37:13 -4291.612242] SLOW spr round 23 (radius: 15)
[01:37:23 -4291.334611] SLOW spr round 24 (radius: 5)
[01:37:30 -4290.777018] SLOW spr round 25 (radius: 5)
[01:37:36 -4290.776809] SLOW spr round 26 (radius: 10)
[01:37:42 -4290.776807] SLOW spr round 27 (radius: 15)
[01:37:52 -4290.327929] SLOW spr round 28 (radius: 5)
[01:37:59 -4289.620091] SLOW spr round 29 (radius: 5)
[01:38:05 -4289.422942] SLOW spr round 30 (radius: 5)
[01:38:11 -4289.422054] SLOW spr round 31 (radius: 10)
[01:38:16 -4289.421977] SLOW spr round 32 (radius: 15)
[01:38:26 -4289.254809] SLOW spr round 33 (radius: 5)
[01:38:34 -4288.207340] SLOW spr round 34 (radius: 5)
[01:38:40 -4288.206894] SLOW spr round 35 (radius: 10)
[01:38:45 -4287.233020] SLOW spr round 36 (radius: 5)
[01:38:52 -4286.268561] SLOW spr round 37 (radius: 5)
[01:38:59 -4285.935825] SLOW spr round 38 (radius: 5)
[01:39:04 -4285.725198] SLOW spr round 39 (radius: 5)
[01:39:10 -4285.724692] SLOW spr round 40 (radius: 10)
[01:39:15 -4285.724686] SLOW spr round 41 (radius: 15)
[01:39:25 -4285.548771] SLOW spr round 42 (radius: 5)
[01:39:32 -4285.544279] SLOW spr round 43 (radius: 10)
[01:39:38 -4285.544089] SLOW spr round 44 (radius: 15)
[01:39:47 -4285.544089] SLOW spr round 45 (radius: 20)
[01:39:58 -4281.116259] SLOW spr round 46 (radius: 5)
[01:40:05 -4281.115869] SLOW spr round 47 (radius: 10)
[01:40:11 -4281.115860] SLOW spr round 48 (radius: 15)
[01:40:20 -4281.115859] SLOW spr round 49 (radius: 20)
[01:40:31 -4281.115859] SLOW spr round 50 (radius: 25)
[01:40:40 -4276.935897] SLOW spr round 51 (radius: 5)
[01:40:48 -4276.934696] SLOW spr round 52 (radius: 10)
[01:40:54 -4276.934469] SLOW spr round 53 (radius: 15)
[01:41:03 -4276.934400] SLOW spr round 54 (radius: 20)
[01:41:14 -4276.934381] SLOW spr round 55 (radius: 25)
[01:41:23 -4276.934376] Model parameter optimization (eps = 0.100000)

[01:41:25] ML tree search #15, logLikelihood: -4276.475167

[01:41:25 -8654.606957] Initial branch length optimization
[01:41:25 -7115.416476] Model parameter optimization (eps = 10.000000)
[01:41:28 -7071.250623] AUTODETECT spr round 1 (radius: 5)
[01:41:32 -5929.670318] AUTODETECT spr round 2 (radius: 10)
[01:41:37 -5249.243539] AUTODETECT spr round 3 (radius: 15)
[01:41:42 -4847.247505] AUTODETECT spr round 4 (radius: 20)
[01:41:48 -4751.298458] AUTODETECT spr round 5 (radius: 25)
[01:41:53 -4605.700029] SPR radius for FAST iterations: 25 (autodetect)
[01:41:53 -4605.700029] Model parameter optimization (eps = 3.000000)
[01:41:57 -4599.896582] FAST spr round 1 (radius: 25)
[01:42:01 -4355.495019] FAST spr round 2 (radius: 25)
[01:42:05 -4334.900820] FAST spr round 3 (radius: 25)
[01:42:09 -4327.116278] FAST spr round 4 (radius: 25)
[01:42:13 -4326.840530] FAST spr round 5 (radius: 25)
[01:42:17 -4326.838376] Model parameter optimization (eps = 1.000000)
[01:42:19 -4324.054268] SLOW spr round 1 (radius: 5)
[01:42:25 -4322.095948] SLOW spr round 2 (radius: 5)
[01:42:30 -4322.095097] SLOW spr round 3 (radius: 10)
[01:42:36 -4320.192033] SLOW spr round 4 (radius: 5)
[01:42:43 -4319.981085] SLOW spr round 5 (radius: 5)
[01:42:49 -4319.981060] SLOW spr round 6 (radius: 10)
[01:42:55 -4319.981057] SLOW spr round 7 (radius: 15)
[01:43:04 -4319.532942] SLOW spr round 8 (radius: 5)
[01:43:11 -4319.066024] SLOW spr round 9 (radius: 5)
[01:43:17 -4318.632344] SLOW spr round 10 (radius: 5)
[01:43:23 -4318.632082] SLOW spr round 11 (radius: 10)
[01:43:29 -4317.793635] SLOW spr round 12 (radius: 5)
[01:43:36 -4317.790698] SLOW spr round 13 (radius: 10)
[01:43:42 -4317.790698] SLOW spr round 14 (radius: 15)
[01:43:51 -4317.790698] SLOW spr round 15 (radius: 20)
[01:44:01 -4313.673450] SLOW spr round 16 (radius: 5)
[01:44:09 -4312.406591] SLOW spr round 17 (radius: 5)
[01:44:15 -4312.406568] SLOW spr round 18 (radius: 10)
[01:44:21 -4311.301339] SLOW spr round 19 (radius: 5)
[01:44:28 -4311.301329] SLOW spr round 20 (radius: 10)
[01:44:34 -4311.301329] SLOW spr round 21 (radius: 15)
[01:44:44 -4311.236170] SLOW spr round 22 (radius: 20)
[01:44:54 -4311.132050] SLOW spr round 23 (radius: 5)
[01:45:02 -4311.131554] SLOW spr round 24 (radius: 10)
[01:45:08 -4311.131507] SLOW spr round 25 (radius: 15)
[01:45:17 -4309.076446] SLOW spr round 26 (radius: 5)
[01:45:25 -4308.764467] SLOW spr round 27 (radius: 5)
[01:45:31 -4308.764011] SLOW spr round 28 (radius: 10)
[01:45:36 -4308.763952] SLOW spr round 29 (radius: 15)
[01:45:46 -4308.763944] SLOW spr round 30 (radius: 20)
[01:45:57 -4307.526179] SLOW spr round 31 (radius: 5)
[01:46:04 -4307.525624] SLOW spr round 32 (radius: 10)
[01:46:10 -4307.525590] SLOW spr round 33 (radius: 15)
[01:46:19 -4307.525587] SLOW spr round 34 (radius: 20)
[01:46:29 -4307.525587] SLOW spr round 35 (radius: 25)
[01:46:40 -4302.563460] SLOW spr round 36 (radius: 5)
[01:46:47 -4302.064510] SLOW spr round 37 (radius: 5)
[01:46:54 -4302.064442] SLOW spr round 38 (radius: 10)
[01:46:59 -4302.064441] SLOW spr round 39 (radius: 15)
[01:47:08 -4301.984777] SLOW spr round 40 (radius: 20)
[01:47:19 -4301.352146] SLOW spr round 41 (radius: 5)
[01:47:26 -4301.351970] SLOW spr round 42 (radius: 10)
[01:47:32 -4301.239316] SLOW spr round 43 (radius: 5)
[01:47:39 -4301.239266] SLOW spr round 44 (radius: 10)
[01:47:45 -4301.239266] SLOW spr round 45 (radius: 15)
[01:47:54 -4300.750922] SLOW spr round 46 (radius: 5)
[01:48:01 -4300.750729] SLOW spr round 47 (radius: 10)
[01:48:08 -4300.750727] SLOW spr round 48 (radius: 15)
[01:48:16 -4300.750727] SLOW spr round 49 (radius: 20)
[01:48:27 -4300.750727] SLOW spr round 50 (radius: 25)
[01:48:37 -4300.185535] SLOW spr round 51 (radius: 5)
[01:48:44 -4300.185494] SLOW spr round 52 (radius: 10)
[01:48:51 -4300.185489] SLOW spr round 53 (radius: 15)
[01:48:59 -4300.185488] SLOW spr round 54 (radius: 20)
[01:49:10 -4300.185487] SLOW spr round 55 (radius: 25)
[01:49:20 -4300.185486] Model parameter optimization (eps = 0.100000)

[01:49:22] ML tree search #16, logLikelihood: -4298.464949

[01:49:22 -8693.505723] Initial branch length optimization
[01:49:22 -7426.807006] Model parameter optimization (eps = 10.000000)
[01:49:26 -7105.272903] AUTODETECT spr round 1 (radius: 5)
[01:49:29 -5867.391386] AUTODETECT spr round 2 (radius: 10)
[01:49:34 -5078.300143] AUTODETECT spr round 3 (radius: 15)
[01:49:40 -4838.042798] AUTODETECT spr round 4 (radius: 20)
[01:49:47 -4678.820179] AUTODETECT spr round 5 (radius: 25)
[01:49:54 -4581.599137] SPR radius for FAST iterations: 25 (autodetect)
[01:49:54 -4581.599137] Model parameter optimization (eps = 3.000000)
[01:49:56 -4578.315179] FAST spr round 1 (radius: 25)
[01:50:01 -4344.558934] FAST spr round 2 (radius: 25)
[01:50:05 -4321.466042] FAST spr round 3 (radius: 25)
[01:50:09 -4313.069749] FAST spr round 4 (radius: 25)
[01:50:13 -4306.096196] FAST spr round 5 (radius: 25)
[01:50:17 -4297.271907] FAST spr round 6 (radius: 25)
[01:50:20 -4296.813643] FAST spr round 7 (radius: 25)
[01:50:24 -4294.837820] FAST spr round 8 (radius: 25)
[01:50:27 -4294.837602] Model parameter optimization (eps = 1.000000)
[01:50:30 -4292.663047] SLOW spr round 1 (radius: 5)
[01:50:36 -4289.290665] SLOW spr round 2 (radius: 5)
[01:50:42 -4289.241931] SLOW spr round 3 (radius: 10)
[01:50:47 -4287.507289] SLOW spr round 4 (radius: 5)
[01:50:55 -4286.000808] SLOW spr round 5 (radius: 5)
[01:51:01 -4285.997377] SLOW spr round 6 (radius: 10)
[01:51:06 -4284.777903] SLOW spr round 7 (radius: 5)
[01:51:13 -4284.777522] SLOW spr round 8 (radius: 10)
[01:51:19 -4282.087962] SLOW spr round 9 (radius: 5)
[01:51:27 -4281.959831] SLOW spr round 10 (radius: 5)
[01:51:33 -4281.957061] SLOW spr round 11 (radius: 10)
[01:51:38 -4281.751361] SLOW spr round 12 (radius: 5)
[01:51:45 -4281.537039] SLOW spr round 13 (radius: 5)
[01:51:51 -4281.201623] SLOW spr round 14 (radius: 5)
[01:51:57 -4281.201128] SLOW spr round 15 (radius: 10)
[01:52:02 -4281.201113] SLOW spr round 16 (radius: 15)
[01:52:14 -4276.129375] SLOW spr round 17 (radius: 5)
[01:52:21 -4275.434774] SLOW spr round 18 (radius: 5)
[01:52:28 -4275.044020] SLOW spr round 19 (radius: 5)
[01:52:33 -4275.043165] SLOW spr round 20 (radius: 10)
[01:52:38 -4274.455885] SLOW spr round 21 (radius: 5)
[01:52:46 -4273.211817] SLOW spr round 22 (radius: 5)
[01:52:52 -4273.211480] SLOW spr round 23 (radius: 10)
[01:52:57 -4273.211459] SLOW spr round 24 (radius: 15)
[01:53:08 -4272.302151] SLOW spr round 25 (radius: 5)
[01:53:15 -4272.297652] SLOW spr round 26 (radius: 10)
[01:53:21 -4272.297629] SLOW spr round 27 (radius: 15)
[01:53:31 -4271.779501] SLOW spr round 28 (radius: 5)
[01:53:38 -4271.633395] SLOW spr round 29 (radius: 5)
[01:53:44 -4271.633297] SLOW spr round 30 (radius: 10)
[01:53:49 -4271.633292] SLOW spr round 31 (radius: 15)
[01:54:00 -4271.633292] SLOW spr round 32 (radius: 20)
[01:54:11 -4269.703939] SLOW spr round 33 (radius: 5)
[01:54:19 -4267.509974] SLOW spr round 34 (radius: 5)
[01:54:25 -4265.879572] SLOW spr round 35 (radius: 5)
[01:54:31 -4265.879545] SLOW spr round 36 (radius: 10)
[01:54:36 -4265.541694] SLOW spr round 37 (radius: 5)
[01:54:43 -4265.539191] SLOW spr round 38 (radius: 10)
[01:54:48 -4262.493427] SLOW spr round 39 (radius: 5)
[01:54:55 -4262.147943] SLOW spr round 40 (radius: 5)
[01:55:02 -4261.450958] SLOW spr round 41 (radius: 5)
[01:55:07 -4261.450797] SLOW spr round 42 (radius: 10)
[01:55:12 -4261.450784] SLOW spr round 43 (radius: 15)
[01:55:23 -4261.450782] SLOW spr round 44 (radius: 20)
[01:55:35 -4261.368426] SLOW spr round 45 (radius: 25)
[01:55:45 -4260.699792] SLOW spr round 46 (radius: 5)
[01:55:52 -4260.698907] SLOW spr round 47 (radius: 10)
[01:55:58 -4260.698878] SLOW spr round 48 (radius: 15)
[01:56:08 -4260.698871] SLOW spr round 49 (radius: 20)
[01:56:20 -4260.640165] SLOW spr round 50 (radius: 25)
[01:56:30 -4260.640154] Model parameter optimization (eps = 0.100000)

[01:56:32] ML tree search #17, logLikelihood: -4260.215242

[01:56:32 -8723.441550] Initial branch length optimization
[01:56:32 -7167.346950] Model parameter optimization (eps = 10.000000)
[01:56:36 -7114.129737] AUTODETECT spr round 1 (radius: 5)
[01:56:39 -5852.234871] AUTODETECT spr round 2 (radius: 10)
[01:56:44 -5043.691449] AUTODETECT spr round 3 (radius: 15)
[01:56:50 -4706.288153] AUTODETECT spr round 4 (radius: 20)
[01:56:58 -4587.768834] AUTODETECT spr round 5 (radius: 25)
[01:57:04 -4538.128907] SPR radius for FAST iterations: 25 (autodetect)
[01:57:04 -4538.128907] Model parameter optimization (eps = 3.000000)
[01:57:08 -4532.627654] FAST spr round 1 (radius: 25)
[01:57:12 -4346.898577] FAST spr round 2 (radius: 25)
[01:57:17 -4338.480121] FAST spr round 3 (radius: 25)
[01:57:21 -4325.647563] FAST spr round 4 (radius: 25)
[01:57:25 -4322.526485] FAST spr round 5 (radius: 25)
[01:57:29 -4320.926983] FAST spr round 6 (radius: 25)
[01:57:33 -4318.690556] FAST spr round 7 (radius: 25)
[01:57:36 -4318.662468] Model parameter optimization (eps = 1.000000)
[01:57:38 -4318.252750] SLOW spr round 1 (radius: 5)
[01:57:44 -4317.931813] SLOW spr round 2 (radius: 5)
[01:57:50 -4317.931345] SLOW spr round 3 (radius: 10)
[01:57:55 -4317.931330] SLOW spr round 4 (radius: 15)
[01:58:06 -4312.316668] SLOW spr round 5 (radius: 5)
[01:58:13 -4311.299002] SLOW spr round 6 (radius: 5)
[01:58:20 -4311.297092] SLOW spr round 7 (radius: 10)
[01:58:26 -4311.098665] SLOW spr round 8 (radius: 5)
[01:58:33 -4310.374718] SLOW spr round 9 (radius: 5)
[01:58:39 -4310.374697] SLOW spr round 10 (radius: 10)
[01:58:44 -4310.374697] SLOW spr round 11 (radius: 15)
[01:58:55 -4309.793228] SLOW spr round 12 (radius: 5)
[01:59:02 -4309.770053] SLOW spr round 13 (radius: 10)
[01:59:08 -4309.769107] SLOW spr round 14 (radius: 15)
[01:59:18 -4309.768560] SLOW spr round 15 (radius: 20)
[01:59:29 -4308.564251] SLOW spr round 16 (radius: 5)
[01:59:37 -4308.563672] SLOW spr round 17 (radius: 10)
[01:59:43 -4308.134833] SLOW spr round 18 (radius: 5)
[01:59:50 -4308.134695] SLOW spr round 19 (radius: 10)
[01:59:56 -4308.134605] SLOW spr round 20 (radius: 15)
[02:00:06 -4308.134536] SLOW spr round 21 (radius: 20)
[02:00:18 -4307.653175] SLOW spr round 22 (radius: 5)
[02:00:25 -4307.653100] SLOW spr round 23 (radius: 10)
[02:00:32 -4307.653098] SLOW spr round 24 (radius: 15)
[02:00:42 -4307.653098] SLOW spr round 25 (radius: 20)
[02:00:53 -4307.653098] SLOW spr round 26 (radius: 25)
[02:01:03 -4305.860484] SLOW spr round 27 (radius: 5)
[02:01:11 -4303.192181] SLOW spr round 28 (radius: 5)
[02:01:18 -4303.192135] SLOW spr round 29 (radius: 10)
[02:01:24 -4302.638185] SLOW spr round 30 (radius: 5)
[02:01:31 -4300.657067] SLOW spr round 31 (radius: 5)
[02:01:37 -4300.656790] SLOW spr round 32 (radius: 10)
[02:01:43 -4300.656745] SLOW spr round 33 (radius: 15)
[02:01:54 -4298.725898] SLOW spr round 34 (radius: 5)
[02:02:01 -4297.661739] SLOW spr round 35 (radius: 5)
[02:02:08 -4297.660245] SLOW spr round 36 (radius: 10)
[02:02:13 -4297.660140] SLOW spr round 37 (radius: 15)
[02:02:24 -4297.294423] SLOW spr round 38 (radius: 5)
[02:02:31 -4297.275613] SLOW spr round 39 (radius: 10)
[02:02:37 -4297.275564] SLOW spr round 40 (radius: 15)
[02:02:47 -4297.275557] SLOW spr round 41 (radius: 20)
[02:02:58 -4297.275556] SLOW spr round 42 (radius: 25)
[02:03:08 -4297.275556] Model parameter optimization (eps = 0.100000)

[02:03:15] ML tree search #18, logLikelihood: -4285.194078

[02:03:15 -8714.415315] Initial branch length optimization
[02:03:15 -7414.417857] Model parameter optimization (eps = 10.000000)
[02:03:19 -7141.015276] AUTODETECT spr round 1 (radius: 5)
[02:03:23 -5998.901511] AUTODETECT spr round 2 (radius: 10)
[02:03:27 -5176.552397] AUTODETECT spr round 3 (radius: 15)
[02:03:33 -4737.762091] AUTODETECT spr round 4 (radius: 20)
[02:03:39 -4594.220615] AUTODETECT spr round 5 (radius: 25)
[02:03:44 -4576.170292] SPR radius for FAST iterations: 25 (autodetect)
[02:03:44 -4576.170292] Model parameter optimization (eps = 3.000000)
[02:03:46 -4574.118480] FAST spr round 1 (radius: 25)
[02:03:51 -4374.849006] FAST spr round 2 (radius: 25)
[02:03:56 -4356.501990] FAST spr round 3 (radius: 25)
[02:04:00 -4346.861836] FAST spr round 4 (radius: 25)
[02:04:03 -4346.836998] Model parameter optimization (eps = 1.000000)
[02:04:05 -4344.556287] SLOW spr round 1 (radius: 5)
[02:04:11 -4344.474128] SLOW spr round 2 (radius: 10)
[02:04:17 -4342.414261] SLOW spr round 3 (radius: 5)
[02:04:24 -4342.247160] SLOW spr round 4 (radius: 5)
[02:04:30 -4342.246110] SLOW spr round 5 (radius: 10)
[02:04:35 -4342.245884] SLOW spr round 6 (radius: 15)
[02:04:43 -4335.243945] SLOW spr round 7 (radius: 5)
[02:04:50 -4335.078721] SLOW spr round 8 (radius: 5)
[02:04:57 -4333.889884] SLOW spr round 9 (radius: 5)
[02:05:02 -4333.889804] SLOW spr round 10 (radius: 10)
[02:05:08 -4333.889797] SLOW spr round 11 (radius: 15)
[02:05:15 -4333.889796] SLOW spr round 12 (radius: 20)
[02:05:25 -4330.359445] SLOW spr round 13 (radius: 5)
[02:05:32 -4329.933258] SLOW spr round 14 (radius: 5)
[02:05:38 -4329.877358] SLOW spr round 15 (radius: 10)
[02:05:44 -4329.750812] SLOW spr round 16 (radius: 5)
[02:05:51 -4329.505039] SLOW spr round 17 (radius: 5)
[02:05:57 -4329.505005] SLOW spr round 18 (radius: 10)
[02:06:02 -4329.475833] SLOW spr round 19 (radius: 15)
[02:06:10 -4329.361314] SLOW spr round 20 (radius: 5)
[02:06:17 -4329.360854] SLOW spr round 21 (radius: 10)
[02:06:23 -4329.360821] SLOW spr round 22 (radius: 15)
[02:06:31 -4329.360818] SLOW spr round 23 (radius: 20)
[02:06:39 -4329.360816] SLOW spr round 24 (radius: 25)
[02:06:49 -4324.445861] SLOW spr round 25 (radius: 5)
[02:06:56 -4312.236017] SLOW spr round 26 (radius: 5)
[02:07:03 -4312.145924] SLOW spr round 27 (radius: 10)
[02:07:08 -4311.074129] SLOW spr round 28 (radius: 5)
[02:07:15 -4311.018141] SLOW spr round 29 (radius: 10)
[02:07:21 -4306.599844] SLOW spr round 30 (radius: 5)
[02:07:28 -4306.123621] SLOW spr round 31 (radius: 5)
[02:07:34 -4306.121172] SLOW spr round 32 (radius: 10)
[02:07:39 -4304.001505] SLOW spr round 33 (radius: 5)
[02:07:47 -4303.029703] SLOW spr round 34 (radius: 5)
[02:07:53 -4303.029380] SLOW spr round 35 (radius: 10)
[02:07:58 -4303.029369] SLOW spr round 36 (radius: 15)
[02:08:07 -4302.377417] SLOW spr round 37 (radius: 5)
[02:08:14 -4302.377342] SLOW spr round 38 (radius: 10)
[02:08:20 -4302.377340] SLOW spr round 39 (radius: 15)
[02:08:28 -4302.186666] SLOW spr round 40 (radius: 5)
[02:08:35 -4302.186433] SLOW spr round 41 (radius: 10)
[02:08:41 -4302.186427] SLOW spr round 42 (radius: 15)
[02:08:50 -4302.186427] SLOW spr round 43 (radius: 20)
[02:09:00 -4302.186427] SLOW spr round 44 (radius: 25)
[02:09:09 -4301.579873] SLOW spr round 45 (radius: 5)
[02:09:17 -4301.578196] SLOW spr round 46 (radius: 10)
[02:09:23 -4301.578143] SLOW spr round 47 (radius: 15)
[02:09:32 -4301.578139] SLOW spr round 48 (radius: 20)
[02:09:42 -4301.578138] SLOW spr round 49 (radius: 25)
[02:09:51 -4301.436540] SLOW spr round 50 (radius: 5)
[02:09:59 -4301.435577] SLOW spr round 51 (radius: 10)
[02:10:05 -4301.435577] SLOW spr round 52 (radius: 15)
[02:10:13 -4301.435577] SLOW spr round 53 (radius: 20)
[02:10:23 -4301.435577] SLOW spr round 54 (radius: 25)
[02:10:33 -4301.435577] Model parameter optimization (eps = 0.100000)

[02:10:34] ML tree search #19, logLikelihood: -4301.041988

[02:10:35 -8636.282752] Initial branch length optimization
[02:10:35 -7379.484669] Model parameter optimization (eps = 10.000000)
[02:10:39 -7050.351307] AUTODETECT spr round 1 (radius: 5)
[02:10:42 -5810.336793] AUTODETECT spr round 2 (radius: 10)
[02:10:47 -4984.963833] AUTODETECT spr round 3 (radius: 15)
[02:10:53 -4639.135406] AUTODETECT spr round 4 (radius: 20)
[02:10:59 -4554.840481] AUTODETECT spr round 5 (radius: 25)
[02:11:06 -4510.932677] SPR radius for FAST iterations: 25 (autodetect)
[02:11:06 -4510.932677] Model parameter optimization (eps = 3.000000)
[02:11:07 -4508.936777] FAST spr round 1 (radius: 25)
[02:11:12 -4331.070148] FAST spr round 2 (radius: 25)
[02:11:16 -4316.287993] FAST spr round 3 (radius: 25)
[02:11:20 -4316.254350] Model parameter optimization (eps = 1.000000)
[02:11:22 -4316.081521] SLOW spr round 1 (radius: 5)
[02:11:27 -4314.209219] SLOW spr round 2 (radius: 5)
[02:11:33 -4313.858583] SLOW spr round 3 (radius: 5)
[02:11:39 -4310.472305] SLOW spr round 4 (radius: 5)
[02:11:44 -4310.471845] SLOW spr round 5 (radius: 10)
[02:11:49 -4310.471791] SLOW spr round 6 (radius: 15)
[02:11:59 -4306.130359] SLOW spr round 7 (radius: 5)
[02:12:07 -4303.955133] SLOW spr round 8 (radius: 5)
[02:12:13 -4303.954263] SLOW spr round 9 (radius: 10)
[02:12:18 -4303.335195] SLOW spr round 10 (radius: 5)
[02:12:26 -4302.767729] SLOW spr round 11 (radius: 5)
[02:12:32 -4302.442795] SLOW spr round 12 (radius: 5)
[02:12:37 -4302.442724] SLOW spr round 13 (radius: 10)
[02:12:43 -4302.080225] SLOW spr round 14 (radius: 5)
[02:12:50 -4302.080217] SLOW spr round 15 (radius: 10)
[02:12:56 -4302.080216] SLOW spr round 16 (radius: 15)
[02:13:04 -4297.996335] SLOW spr round 17 (radius: 5)
[02:13:12 -4297.995926] SLOW spr round 18 (radius: 10)
[02:13:18 -4297.995901] SLOW spr round 19 (radius: 15)
[02:13:27 -4295.064477] SLOW spr round 20 (radius: 5)
[02:13:34 -4295.064297] SLOW spr round 21 (radius: 10)
[02:13:40 -4295.064281] SLOW spr round 22 (radius: 15)
[02:13:48 -4295.064279] SLOW spr round 23 (radius: 20)
[02:13:58 -4291.592031] SLOW spr round 24 (radius: 5)
[02:14:05 -4291.591986] SLOW spr round 25 (radius: 10)
[02:14:12 -4291.591986] SLOW spr round 26 (radius: 15)
[02:14:20 -4291.591986] SLOW spr round 27 (radius: 20)
[02:14:30 -4291.299507] SLOW spr round 28 (radius: 5)
[02:14:37 -4290.291128] SLOW spr round 29 (radius: 5)
[02:14:43 -4290.291057] SLOW spr round 30 (radius: 10)
[02:14:49 -4290.291043] SLOW spr round 31 (radius: 15)
[02:14:58 -4290.291040] SLOW spr round 32 (radius: 20)
[02:15:08 -4289.606826] SLOW spr round 33 (radius: 5)
[02:15:15 -4289.606823] SLOW spr round 34 (radius: 10)
[02:15:22 -4289.606823] SLOW spr round 35 (radius: 15)
[02:15:30 -4289.606823] SLOW spr round 36 (radius: 20)
[02:15:40 -4289.606823] SLOW spr round 37 (radius: 25)
[02:15:50 -4289.606823] Model parameter optimization (eps = 0.100000)

[02:15:52] ML tree search #20, logLikelihood: -4288.909107


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.262200,0.101881) (0.000262,0.236963) (0.440760,1.527491) (0.296777,1.010749) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -4255.262888

AIC score: 9484.525775 / AICc score: 484796.525775 / BIC score: 10037.511458
Free parameters (model + branch lengths): 487

WARNING: Number of free parameters (K=487) is larger than alignment size (n=23).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 1 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N7U7/3_mltree/Q8N7U7.raxml.bestTreeCollapsed
Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N7U7/3_mltree/Q8N7U7.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N7U7/3_mltree/Q8N7U7.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N7U7/3_mltree/Q8N7U7.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N7U7/3_mltree/Q8N7U7.raxml.log

Analysis started: 02-Jul-2021 21:24:52 / finished: 02-Jul-2021 23:40:44

Elapsed time: 8152.374 seconds