RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:33:11 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8N752/2_msa/Q8N752_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8N752/3_mltree/Q8N752.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8N752/4_raxmlng_ancestral/Q8N752 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647991 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8N752/2_msa/Q8N752_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 337 sites WARNING: Sequences sp_Q6P3K7_KC1DB_DANRE_7955 and tr_W5KZ82_W5KZ82_ASTMX_7994 are exactly identical! WARNING: Sequences sp_P67962_KC1A_CHICK_9031 and tr_G1KRF6_G1KRF6_ANOCA_28377 are exactly identical! WARNING: Sequences sp_P67962_KC1A_CHICK_9031 and tr_A0A151M6R7_A0A151M6R7_ALLMI_8496 are exactly identical! WARNING: Sequences sp_P67962_KC1A_CHICK_9031 and tr_A0A1L8GXP6_A0A1L8GXP6_XENLA_8355 are exactly identical! WARNING: Sequences sp_P67962_KC1A_CHICK_9031 and tr_A0A1U8CYR8_A0A1U8CYR8_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P67962_KC1A_CHICK_9031 and tr_A0A218UMV9_A0A218UMV9_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q5ZLL1_KC1E_CHICK_9031 and tr_G1NIL4_G1NIL4_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q5ZLL1_KC1E_CHICK_9031 and tr_H9GDS4_H9GDS4_ANOCA_28377 are exactly identical! WARNING: Sequences sp_Q5ZLL1_KC1E_CHICK_9031 and tr_K7F8E3_K7F8E3_PELSI_13735 are exactly identical! WARNING: Sequences sp_Q5ZLL1_KC1E_CHICK_9031 and tr_U3KDP9_U3KDP9_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q5ZLL1_KC1E_CHICK_9031 and tr_A0A0Q3M158_A0A0Q3M158_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q5ZLL1_KC1E_CHICK_9031 and tr_A0A1U7S293_A0A1U7S293_ALLSI_38654 are exactly identical! WARNING: Sequences sp_Q5ZLL1_KC1E_CHICK_9031 and tr_A0A1V4J9N3_A0A1V4J9N3_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q5ZLL1_KC1E_CHICK_9031 and tr_A0A218UZU2_A0A218UZU2_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_M3YS36_M3YS36_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_A0A2I3HMA6_A0A2I3HMA6_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_G3RDH8_G3RDH8_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_F1PUU0_F1PUU0_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_A0A286X950_A0A286X950_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and sp_P48729_KC1A_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_H9ENA3_H9ENA3_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_F7HFK8_F7HFK8_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_G1LFH9_G1LFH9_AILME_9646 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_A0A2I3NG04_A0A2I3NG04_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_A0A1S3W323_A0A1S3W323_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_A0A2K6CPS0_A0A2K6CPS0_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_A0A2R9CFB2_A0A2R9CFB2_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_A0A2Y9E2I9_A0A2Y9E2I9_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_A0A2Y9IJG7_A0A2Y9IJG7_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q8BK63_KC1A_MOUSE_10090 and tr_A0A384C781_A0A384C781_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q9DC28_KC1D_MOUSE_10090 and sp_Q06486_KC1D_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9DC28_KC1D_MOUSE_10090 and tr_H0VI07_H0VI07_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q9DC28_KC1D_MOUSE_10090 and sp_P48730_KC1D_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9DC28_KC1D_MOUSE_10090 and tr_M3VH47_M3VH47_PIG_9823 are exactly identical! WARNING: Sequences sp_Q9DC28_KC1D_MOUSE_10090 and sp_P35508_KC1D_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q9JMK2_KC1E_MOUSE_10090 and tr_Q99PS2_Q99PS2_RAT_10116 are exactly identical! WARNING: Sequences tr_C5XHN8_C5XHN8_SORBI_4558 and tr_K3XHE0_K3XHE0_SETIT_4555 are exactly identical! WARNING: Sequences sp_P54367_KC1A_DROME_7227 and tr_B4IGI2_B4IGI2_DROSE_7238 are exactly identical! WARNING: Sequences tr_D8UCQ6_D8UCQ6_VOLCA_3068 and tr_A8IYG8_A8IYG8_CHLRE_3055 are exactly identical! WARNING: Sequences tr_G1RYN2_G1RYN2_NOMLE_61853 and tr_A0A2I2YDN8_A0A2I2YDN8_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RYN2_G1RYN2_NOMLE_61853 and tr_H2P4D3_H2P4D3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RYN2_G1RYN2_NOMLE_61853 and tr_A0A2I3RHK0_A0A2I3RHK0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RYN2_G1RYN2_NOMLE_61853 and tr_H0WIT2_H0WIT2_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1RYN2_G1RYN2_NOMLE_61853 and sp_P49674_KC1E_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RYN2_G1RYN2_NOMLE_61853 and tr_F6R2T7_F6R2T7_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RYN2_G1RYN2_NOMLE_61853 and tr_G7PFF2_G7PFF2_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RYN2_G1RYN2_NOMLE_61853 and tr_A0A096NK14_A0A096NK14_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RYN2_G1RYN2_NOMLE_61853 and tr_A0A3Q0DJH5_A0A3Q0DJH5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1RYN2_G1RYN2_NOMLE_61853 and tr_A0A2K6B7J2_A0A2K6B7J2_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RYN2_G1RYN2_NOMLE_61853 and tr_A0A2K5ZG34_A0A2K5ZG34_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RYN2_G1RYN2_NOMLE_61853 and tr_A0A2R9B1J6_A0A2R9B1J6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_G1U4F8_G1U4F8_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_F6YKD5_F6YKD5_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_I3M5X0_I3M5X0_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_H0V5Y3_H0V5Y3_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_G5AYS9_G5AYS9_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_G3TPC2_G3TPC2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_G1LVK1_G1LVK1_AILME_9646 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_A0A337SII5_A0A337SII5_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_A0A091E2B9_A0A091E2B9_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_A0A1S3W699_A0A1S3W699_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_A0A1S3FUY8_A0A1S3FUY8_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_Q9JKD0_Q9JKD0_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_A0A2U3WNZ3_A0A2U3WNZ3_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_A0A2Y9Q3Q5_A0A2Y9Q3Q5_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_A0A2Y9F0V4_A0A2Y9F0V4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1PI59_G1PI59_MYOLU_59463 and tr_A0A384APK9_A0A384APK9_BALAS_310752 are exactly identical! WARNING: Sequences tr_B0CRP3_B0CRP3_LACBS_486041 and tr_A0A0C9XQI7_A0A0C9XQI7_9AGAR_1095629 are exactly identical! WARNING: Sequences tr_J3KK00_J3KK00_COCIM_246410 and tr_A0A0J6Y282_A0A0J6Y282_COCIT_404692 are exactly identical! WARNING: Sequences tr_D8SD29_D8SD29_SELML_88036 and tr_D8SH83_D8SH83_SELML_88036 are exactly identical! WARNING: Sequences tr_G3QCX1_G3QCX1_GORGO_9595 and tr_A0A2I3RNK5_A0A2I3RNK5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QCX1_G3QCX1_GORGO_9595 and tr_A0A096NTN2_A0A096NTN2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QCX1_G3QCX1_GORGO_9595 and tr_A0A1S2ZTY9_A0A1S2ZTY9_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G3QCX1_G3QCX1_GORGO_9595 and tr_A0A2K5LZA3_A0A2K5LZA3_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QCX1_G3QCX1_GORGO_9595 and tr_A0A2K6CDK4_A0A2K6CDK4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QCX1_G3QCX1_GORGO_9595 and tr_A0A2R8ZTM1_A0A2R8ZTM1_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3JAA9_G3JAA9_CORMM_983644 and tr_J5JXR0_J5JXR0_BEAB2_655819 are exactly identical! WARNING: Sequences tr_G3JAA9_G3JAA9_CORMM_983644 and tr_A0A0A2V9K9_A0A0A2V9K9_BEABA_1245745 are exactly identical! WARNING: Sequences tr_G3JAA9_G3JAA9_CORMM_983644 and tr_A0A166W4M5_A0A166W4M5_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_G3JAA9_G3JAA9_CORMM_983644 and tr_A0A168FLZ5_A0A168FLZ5_CORDF_1081108 are exactly identical! WARNING: Sequences tr_G3JAA9_G3JAA9_CORMM_983644 and tr_A0A2N6NM64_A0A2N6NM64_BEABA_176275 are exactly identical! WARNING: Sequences tr_C0NGX8_C0NGX8_AJECG_447093 and tr_C6H709_C6H709_AJECH_544712 are exactly identical! WARNING: Sequences tr_C0NGX8_C0NGX8_AJECG_447093 and tr_F0U710_F0U710_AJEC8_544711 are exactly identical! WARNING: Sequences tr_G1N1Q3_G1N1Q3_MELGA_9103 and tr_U3KAW9_U3KAW9_FICAL_59894 are exactly identical! WARNING: Sequences tr_G1N1Q3_G1N1Q3_MELGA_9103 and tr_A0A0Q3MFU2_A0A0Q3MFU2_AMAAE_12930 are exactly identical! WARNING: Sequences tr_G3USW7_G3USW7_MELGA_9103 and tr_A0A091EGT3_A0A091EGT3_CORBR_85066 are exactly identical! WARNING: Sequences sp_P67828_KC1A_RABIT_9986 and tr_A0A2I3RLP7_A0A2I3RLP7_PANTR_9598 are exactly identical! WARNING: Sequences sp_P67828_KC1A_RABIT_9986 and sp_P67829_KC1A_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P67828_KC1A_RABIT_9986 and tr_A0A287DAP7_A0A287DAP7_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P67828_KC1A_RABIT_9986 and tr_A0A287ASJ4_A0A287ASJ4_PIG_9823 are exactly identical! WARNING: Sequences sp_P67828_KC1A_RABIT_9986 and sp_P67827_KC1A_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P67828_KC1A_RABIT_9986 and tr_A0A0D9RHB9_A0A0D9RHB9_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P67828_KC1A_RABIT_9986 and tr_A0A1V4KU36_A0A1V4KU36_PATFA_372326 are exactly identical! WARNING: Sequences sp_P67828_KC1A_RABIT_9986 and tr_A0A2K5M6V1_A0A2K5M6V1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7VQL5_F7VQL5_SORMK_771870 and tr_G4U7V9_G4U7V9_NEUT9_510952 are exactly identical! WARNING: Sequences tr_A0A179U8W7_A0A179U8W7_BLAGS_559298 and tr_C5GX83_C5GX83_AJEDR_559297 are exactly identical! WARNING: Sequences tr_A0A179U8W7_A0A179U8W7_BLAGS_559298 and tr_A0A2B7X8F8_A0A2B7X8F8_9EURO_2060905 are exactly identical! WARNING: Sequences tr_A0A179U8W7_A0A179U8W7_BLAGS_559298 and tr_A0A1J9Q222_A0A1J9Q222_9EURO_1658174 are exactly identical! WARNING: Sequences tr_Q5KI40_Q5KI40_CRYNJ_214684 and tr_E6R4K5_E6R4K5_CRYGW_367775 are exactly identical! WARNING: Sequences tr_Q5KI40_Q5KI40_CRYNJ_214684 and tr_A0A095D0P0_A0A095D0P0_CRYGR_294750 are exactly identical! WARNING: Sequences tr_B9PPN2_B9PPN2_TOXGV_432359 and tr_A0A074SY39_A0A074SY39_HAMHA_99158 are exactly identical! WARNING: Sequences tr_H2REV2_H2REV2_PANTR_9598 and tr_A0A2R8ZLE3_A0A2R8ZLE3_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6RLE5_F6RLE5_MONDO_13616 and tr_G3VDE6_G3VDE6_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6SHV6_F6SHV6_HORSE_9796 and tr_G5C3A3_G5C3A3_HETGA_10181 are exactly identical! WARNING: Sequences tr_F6SHV6_F6SHV6_HORSE_9796 and tr_A0A091DND5_A0A091DND5_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G4ZN55_G4ZN55_PHYSP_1094619 and tr_H3HDS0_H3HDS0_PHYRM_164328 are exactly identical! WARNING: Sequences tr_G4ZN55_G4ZN55_PHYSP_1094619 and tr_D0N3V9_D0N3V9_PHYIT_403677 are exactly identical! WARNING: Sequences tr_G4ZN55_G4ZN55_PHYSP_1094619 and tr_W2PJ44_W2PJ44_PHYPN_761204 are exactly identical! WARNING: Sequences tr_G4ZN55_G4ZN55_PHYSP_1094619 and tr_A0A0W8DM88_A0A0W8DM88_PHYNI_4790 are exactly identical! WARNING: Sequences tr_G4ZN55_G4ZN55_PHYSP_1094619 and tr_W2MA73_W2MA73_PHYPR_4792 are exactly identical! WARNING: Sequences tr_G4ZN55_G4ZN55_PHYSP_1094619 and tr_A0A329S5K7_A0A329S5K7_9STRA_29920 are exactly identical! WARNING: Sequences tr_A0A3B5R566_A0A3B5R566_XIPMA_8083 and tr_A0A3B5KVB5_A0A3B5KVB5_TAKRU_31033 are exactly identical! WARNING: Sequences tr_M3ZMK6_M3ZMK6_XIPMA_8083 and tr_A0A2I4CID6_A0A2I4CID6_9TELE_52670 are exactly identical! WARNING: Sequences tr_K3YS76_K3YS76_SETIT_4555 and tr_A0A2T7FDL4_A0A2T7FDL4_9POAL_1504633 are exactly identical! WARNING: Sequences tr_A0A158NTS3_A0A158NTS3_ATTCE_12957 and tr_F4WJ18_F4WJ18_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NX23_A0A158NX23_ATTCE_12957 and tr_F4X4A5_F4X4A5_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NX23_A0A158NX23_ATTCE_12957 and tr_A0A195BDU1_A0A195BDU1_9HYME_520822 are exactly identical! WARNING: Sequences tr_J3L3D0_J3L3D0_ORYBR_4533 and tr_A0A0E0FRY7_A0A0E0FRY7_ORYNI_4536 are exactly identical! WARNING: Sequences tr_J3L3D0_J3L3D0_ORYBR_4533 and tr_A2WUA6_A2WUA6_ORYSI_39946 are exactly identical! WARNING: Sequences tr_J3L3D0_J3L3D0_ORYBR_4533 and tr_I1NR50_I1NR50_ORYGL_4538 are exactly identical! WARNING: Sequences tr_J3L3D0_J3L3D0_ORYBR_4533 and tr_A0A0E0DNQ9_A0A0E0DNQ9_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_J3L3D0_J3L3D0_ORYBR_4533 and tr_A0A0E0N1G8_A0A0E0N1G8_ORYRU_4529 are exactly identical! WARNING: Sequences tr_J3L3D0_J3L3D0_ORYBR_4533 and tr_A0A0D3ET45_A0A0D3ET45_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_J3L3D0_J3L3D0_ORYBR_4533 and tr_A0A0D9YDW3_A0A0D9YDW3_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_J3L3D0_J3L3D0_ORYBR_4533 and tr_A0A0E0JN24_A0A0E0JN24_ORYPU_4537 are exactly identical! WARNING: Sequences tr_I2FLY1_I2FLY1_USTH4_1128400 and tr_E6ZKX6_E6ZKX6_SPORE_999809 are exactly identical! WARNING: Sequences tr_I2FLY1_I2FLY1_USTH4_1128400 and tr_R9PDB1_R9PDB1_PSEHS_1305764 are exactly identical! WARNING: Sequences tr_I2FLY1_I2FLY1_USTH4_1128400 and tr_V5EMZ9_V5EMZ9_KALBG_1365824 are exactly identical! WARNING: Sequences tr_I2FLY1_I2FLY1_USTH4_1128400 and tr_A0A0F7RW10_A0A0F7RW10_9BASI_49012 are exactly identical! WARNING: Sequences tr_A0A0E0G9V8_A0A0E0G9V8_ORYNI_4536 and tr_B8AFT9_B8AFT9_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0G9V8_A0A0E0G9V8_ORYNI_4536 and tr_I1P2B8_I1P2B8_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0G9V8_A0A0E0G9V8_ORYNI_4536 and tr_A0A0E0CNK8_A0A0E0CNK8_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0G9V8_A0A0E0G9V8_ORYNI_4536 and tr_A0A0E0NHX9_A0A0E0NHX9_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0G9V8_A0A0E0G9V8_ORYNI_4536 and tr_A0A0D3F7R6_A0A0D3F7R6_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0G9V8_A0A0E0G9V8_ORYNI_4536 and sp_Q6K9N1_CKI1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0GXN3_A0A0E0GXN3_ORYNI_4536 and tr_A2XVI1_A2XVI1_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0GXN3_A0A0E0GXN3_ORYNI_4536 and tr_I1PN08_I1PN08_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0GXN3_A0A0E0GXN3_ORYNI_4536 and tr_A0A0E0PBJ9_A0A0E0PBJ9_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GXN3_A0A0E0GXN3_ORYNI_4536 and tr_A0A0D3FXX8_A0A0D3FXX8_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0GXN3_A0A0E0GXN3_ORYNI_4536 and tr_A0A0D9ZN53_A0A0D9ZN53_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0GXN3_A0A0E0GXN3_ORYNI_4536 and tr_Q7X6X9_Q7X6X9_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B8AAD0_B8AAD0_ORYSI_39946 and tr_Q656Y0_Q656Y0_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B8AXH1_B8AXH1_ORYSI_39946 and tr_I1PYJ0_I1PYJ0_ORYGL_4538 are exactly identical! WARNING: Sequences tr_B8AXH1_B8AXH1_ORYSI_39946 and tr_A0A0E0DV81_A0A0E0DV81_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_B8AXH1_B8AXH1_ORYSI_39946 and tr_A0A0E0PS43_A0A0E0PS43_ORYRU_4529 are exactly identical! WARNING: Sequences tr_B8AXH1_B8AXH1_ORYSI_39946 and tr_A0A0D3GBL4_A0A0D3GBL4_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_B8AXH1_B8AXH1_ORYSI_39946 and tr_A0A0E0A3M8_A0A0E0A3M8_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_B8AXH1_B8AXH1_ORYSI_39946 and tr_Q6L4R3_Q6L4R3_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_K7G092_K7G092_PELSI_13735 and tr_U3K2H6_U3K2H6_FICAL_59894 are exactly identical! WARNING: Sequences tr_K7G092_K7G092_PELSI_13735 and tr_A0A093QMH7_A0A093QMH7_9PASS_328815 are exactly identical! WARNING: Sequences tr_Q4TA90_Q4TA90_TETNG_99883 and tr_G3NWV6_G3NWV6_GASAC_69293 are exactly identical! WARNING: Sequences tr_I1P5E5_I1P5E5_ORYGL_4538 and tr_Q6K988_Q6K988_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_Q5XGI6_Q5XGI6_XENTR_8364 and tr_Q9PUI2_Q9PUI2_XENLA_8355 are exactly identical! WARNING: Sequences tr_F6PU42_F6PU42_CALJA_9483 and tr_A0A2Y9PNV0_A0A2Y9PNV0_DELLE_9749 are exactly identical! WARNING: Sequences tr_E3M8C8_E3M8C8_CAERE_31234 and tr_A0A261C725_A0A261C725_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A8XX71_A8XX71_CAEBR_6238 and tr_A0A2G5UJV0_A0A2G5UJV0_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A0A0R0GL93_A0A0R0GL93_SOYBN_3847 and tr_I1MSF4_I1MSF4_SOYBN_3847 are exactly identical! WARNING: Sequences tr_A0A0R0GL93_A0A0R0GL93_SOYBN_3847 and tr_A0A0L9UXY4_A0A0L9UXY4_PHAAN_3914 are exactly identical! WARNING: Sequences tr_A0A0R0GL93_A0A0R0GL93_SOYBN_3847 and tr_A0A1S3UTW0_A0A1S3UTW0_VIGRR_3916 are exactly identical! WARNING: Sequences tr_F2SEN0_F2SEN0_TRIRC_559305 and tr_F2PIU7_F2PIU7_TRIEC_559882 are exactly identical! WARNING: Sequences tr_F2SEN0_F2SEN0_TRIRC_559305 and tr_A0A178ESG4_A0A178ESG4_TRIRU_5551 are exactly identical! WARNING: Sequences tr_L8G2W6_L8G2W6_PSED2_658429 and tr_A0A094GH94_A0A094GH94_9PEZI_1420912 are exactly identical! WARNING: Sequences tr_A0A337RTE5_A0A337RTE5_FELCA_9685 and tr_A0A2U4AH05_A0A2U4AH05_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A337RTE5_A0A337RTE5_FELCA_9685 and tr_A0A2Y9PFT8_A0A2Y9PFT8_DELLE_9749 are exactly identical! WARNING: Sequences tr_M4CEY9_M4CEY9_BRARP_51351 and tr_A0A078HIF1_A0A078HIF1_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4E4M9_M4E4M9_BRARP_51351 and tr_A0A078FZD0_A0A078FZD0_BRANA_3708 are exactly identical! WARNING: Sequences tr_M7ZSW0_M7ZSW0_TRIUA_4572 and tr_A0A3B6NWE4_A0A3B6NWE4_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M7ZSW0_M7ZSW0_TRIUA_4572 and tr_A0A3B6PT56_A0A3B6PT56_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M7ZSW0_M7ZSW0_TRIUA_4572 and tr_A0A3B6QKH2_A0A3B6QKH2_WHEAT_4565 are exactly identical! WARNING: Sequences tr_U3IBA3_U3IBA3_ANAPL_8839 and tr_A0A218UL19_A0A218UL19_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5WD85_A0A1D5WD85_WHEAT_4565 and tr_A0A3B6EHA8_A0A3B6EHA8_WHEAT_4565 are exactly identical! WARNING: Sequences tr_W9XM54_W9XM54_9EURO_1182543 and tr_W9WL54_W9WL54_9EURO_1182544 are exactly identical! WARNING: Sequences tr_W9XM54_W9XM54_9EURO_1182543 and tr_W9YI29_W9YI29_9EURO_1182541 are exactly identical! WARNING: Sequences tr_W9XM54_W9XM54_9EURO_1182543 and tr_A0A0D2GUW0_A0A0D2GUW0_9EURO_1442368 are exactly identical! WARNING: Sequences tr_W9XM54_W9XM54_9EURO_1182543 and tr_A0A0D1Z3S0_A0A0D1Z3S0_9EURO_212818 are exactly identical! WARNING: Sequences tr_W9XM54_W9XM54_9EURO_1182543 and tr_A0A178ZPU0_A0A178ZPU0_9EURO_1367422 are exactly identical! WARNING: Sequences tr_W9XM54_W9XM54_9EURO_1182543 and tr_A0A1C1CUS5_A0A1C1CUS5_9EURO_86049 are exactly identical! WARNING: Sequences tr_A0A067EPV5_A0A067EPV5_CITSI_2711 and tr_V4UKI1_V4UKI1_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067EQV4_A0A067EQV4_CITSI_2711 and tr_V4S3X1_V4S3X1_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067EQV4_A0A067EQV4_CITSI_2711 and tr_A0A2H5Q871_A0A2H5Q871_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067F2U1_A0A067F2U1_CITSI_2711 and tr_V4T9Q5_V4T9Q5_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A078IWL1_A0A078IWL1_BRANA_3708 and tr_A0A0D3EBY8_A0A0D3EBY8_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0D9S4V6_A0A0D9S4V6_CHLSB_60711 and tr_A0A2Y9TAC1_A0A2Y9TAC1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A0A0LHR7_A0A0A0LHR7_CUCSA_3659 and tr_A0A1S3C9Q6_A0A1S3C9Q6_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0A0LII2_A0A0A0LII2_CUCSA_3659 and tr_A0A1S3CCH0_A0A1S3CCH0_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0A2KUE7_A0A0A2KUE7_PENEN_27334 and tr_A0A1V6P2X6_A0A1V6P2X6_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A0A2KUE7_A0A0A2KUE7_PENEN_27334 and tr_A0A1V6SB36_A0A1V6SB36_9EURO_29845 are exactly identical! WARNING: Sequences tr_A0A0A2KUE7_A0A0A2KUE7_PENEN_27334 and tr_A0A1V6RQK4_A0A1V6RQK4_9EURO_60172 are exactly identical! WARNING: Sequences tr_V4SLS9_V4SLS9_9ROSI_85681 and tr_A0A2H5NE88_A0A2H5NE88_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0D2PFM1_A0A0D2PFM1_GOSRA_29730 and tr_A0A1U8LJ72_A0A1U8LJ72_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2RNY8_A0A0D2RNY8_GOSRA_29730 and tr_A0A1U8KAB5_A0A1U8KAB5_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2RT93_A0A0D2RT93_GOSRA_29730 and tr_A0A1U8JHS7_A0A1U8JHS7_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2W8L6_A0A0D2W8L6_GOSRA_29730 and tr_A0A1U8M1G6_A0A1U8M1G6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0K0FYN4_A0A0K0FYN4_STRVS_75913 and tr_A0A0N5BF81_A0A0N5BF81_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A091VPF5_A0A091VPF5_NIPNI_128390 and tr_A0A091W993_A0A091W993_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091VPF5_A0A091VPF5_NIPNI_128390 and tr_A0A0A0A8J2_A0A0A0A8J2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091VPF5_A0A091VPF5_NIPNI_128390 and tr_A0A091I8V8_A0A091I8V8_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A087R2D6_A0A087R2D6_APTFO_9233 and tr_A0A093GEQ9_A0A093GEQ9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0D2B295_A0A0D2B295_9EURO_91928 and tr_A0A0D2FS19_A0A0D2FS19_9EURO_1442369 are exactly identical! WARNING: Sequences tr_A0A0D2D6Y5_A0A0D2D6Y5_9EURO_215243 and tr_A0A0D2CQG7_A0A0D2CQG7_9EURO_348802 are exactly identical! WARNING: Sequences tr_A0A0G4NUC7_A0A0G4NUC7_PENCA_1429867 and tr_A0A101MMS1_A0A101MMS1_9EURO_48697 are exactly identical! WARNING: Sequences tr_A0A0D0ADI9_A0A0D0ADI9_9HOMO_765257 and tr_A0A0C3JCT5_A0A0C3JCT5_PISTI_870435 are exactly identical! WARNING: Sequences tr_A0A0S6XKI8_A0A0S6XKI8_9FUNG_1603295 and tr_A0A2K1QX68_A0A2K1QX68_9PEZI_2082308 are exactly identical! WARNING: Sequences tr_A0A0V1CJQ8_A0A0V1CJQ8_TRIBR_45882 and tr_A0A0V0TST4_A0A0V0TST4_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0WXR9_A0A0V0WXR9_9BILA_92179 and tr_A0A0V1L2H8_A0A0V1L2H8_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0VPK7_A0A0V0VPK7_9BILA_181606 and tr_A0A0V0ZD88_A0A0V0ZD88_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0VPK7_A0A0V0VPK7_9BILA_181606 and tr_A0A0V1NLA7_A0A0V1NLA7_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0Y724_A0A0V0Y724_TRIPS_6337 and tr_A0A0V1MYC1_A0A0V1MYC1_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0Y724_A0A0V0Y724_TRIPS_6337 and tr_A0A0V1H198_A0A0V1H198_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A164SNL7_A0A164SNL7_9HOMO_1314777 and tr_A0A165YWI0_A0A165YWI0_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A1S3X0B8_A0A1S3X0B8_TOBAC_4097 and tr_A0A1S3X624_A0A1S3X624_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S3X0B8_A0A1S3X0B8_TOBAC_4097 and tr_A0A1U7XW66_A0A1U7XW66_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3X3I5_A0A1S3X3I5_TOBAC_4097 and tr_A0A1S4BFD8_A0A1S4BFD8_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S3X3I5_A0A1S3X3I5_TOBAC_4097 and tr_A0A1J6IUG7_A0A1J6IUG7_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3X3I5_A0A1S3X3I5_TOBAC_4097 and tr_A0A1U7YMR3_A0A1U7YMR3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4B9R8_A0A1S4B9R8_TOBAC_4097 and tr_A0A1J6IEA9_A0A1J6IEA9_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4B9R8_A0A1S4B9R8_TOBAC_4097 and tr_A0A1U7YAG1_A0A1U7YAG1_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3Q560_A0A1S3Q560_SALSA_8030 and tr_A0A060X917_A0A060X917_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B5X3Z8_B5X3Z8_SALSA_8030 and tr_A0A060X4H8_A0A060X4H8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B5X3Z8_B5X3Z8_SALSA_8030 and tr_A0A060X787_A0A060X787_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1B7NZW9_A0A1B7NZW9_9EURO_1658172 and tr_A0A1J9P775_A0A1J9P775_9EURO_1447872 are exactly identical! WARNING: Sequences tr_A0A1B7NZW9_A0A1B7NZW9_9EURO_1658172 and tr_A0A2B7ZE36_A0A2B7ZE36_9EURO_73230 are exactly identical! WARNING: Sequences tr_A0A1M2VWW4_A0A1M2VWW4_TRAPU_154538 and tr_A0A1Y2ITQ6_A0A1Y2ITQ6_PYCCO_1353009 are exactly identical! WARNING: Sequences tr_A0A2D0S5Z9_A0A2D0S5Z9_ICTPU_7998 and tr_A0A2D0S7E2_A0A2D0S7E2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1U8GXW0_A0A1U8GXW0_CAPAN_4072 and tr_A0A2G3C3Y2_A0A2G3C3Y2_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G2ZUN3_A0A2G2ZUN3_CAPAN_4072 and tr_A0A2G3CSD4_A0A2G3CSD4_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2K6CBN1_A0A2K6CBN1_MACNE_9545 and tr_A0A2K6A276_A0A2K6A276_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U3ZJS0_A0A2U3ZJS0_ODORO_9708 and tr_A0A2Y9L5K7_A0A2Y9L5K7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2Y9FXC6_A0A2Y9FXC6_PHYCD_9755 and tr_A0A384AN40_A0A384AN40_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 229 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8N752/4_raxmlng_ancestral/Q8N752.raxml.reduced.phy Alignment comprises 1 partitions and 337 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 337 Gaps: 5.26 % Invariant sites: 7.12 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8N752/4_raxmlng_ancestral/Q8N752.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8N752/3_mltree/Q8N752.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 85 / 6800 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -51183.949874 [00:00:00 -51183.949874] Initial branch length optimization [00:00:00 -50347.093309] Model parameter optimization (eps = 0.100000) [00:00:39] Tree #1, final logLikelihood: -49901.795611 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.347714,0.292801) (0.317894,0.377933) (0.216737,1.071965) (0.117654,4.638279) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8N752/4_raxmlng_ancestral/Q8N752.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8N752/4_raxmlng_ancestral/Q8N752.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8N752/4_raxmlng_ancestral/Q8N752.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8N752/4_raxmlng_ancestral/Q8N752.raxml.log Analysis started: 02-Jun-2021 18:33:11 / finished: 02-Jun-2021 18:33:54 Elapsed time: 43.171 seconds Consumed energy: 2.945 Wh