RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 02-Jul-2021 16:08:06 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N5M9/2_msa/Q8N5M9_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N5M9/3_mltree/Q8N5M9 --seed 2 --threads 4 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N5M9/2_msa/Q8N5M9_trimmed_msa.fasta
[00:00:00] Loaded alignment with 199 taxa and 196 sites

WARNING: Sequences sp_Q5XKN4_JAGN1_MOUSE_10090 and sp_Q4KM64_JAGN1_RAT_10116 are exactly identical!
WARNING: Sequences tr_G1QVZ4_G1QVZ4_NOMLE_61853 and tr_G3R3V7_G3R3V7_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1QVZ4_G1QVZ4_NOMLE_61853 and tr_H2QM11_H2QM11_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1QVZ4_G1QVZ4_NOMLE_61853 and tr_G7MKR7_G7MKR7_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1QVZ4_G1QVZ4_NOMLE_61853 and tr_G8F652_G8F652_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1QVZ4_G1QVZ4_NOMLE_61853 and tr_A0A2I3LEM6_A0A2I3LEM6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1QVZ4_G1QVZ4_NOMLE_61853 and tr_A0A0D9RDJ8_A0A0D9RDJ8_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1QVZ4_G1QVZ4_NOMLE_61853 and tr_A0A2K5LG24_A0A2K5LG24_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1QVZ4_G1QVZ4_NOMLE_61853 and tr_A0A2K6BJZ2_A0A2K6BJZ2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1QVZ4_G1QVZ4_NOMLE_61853 and tr_A0A2K5ZXF1_A0A2K5ZXF1_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1QVZ4_G1QVZ4_NOMLE_61853 and tr_A0A2R9BJF1_A0A2R9BJF1_PANPA_9597 are exactly identical!
WARNING: Sequences tr_J9NSD4_J9NSD4_CANLF_9615 and tr_D2HRA4_D2HRA4_AILME_9646 are exactly identical!
WARNING: Sequences tr_J9NSD4_J9NSD4_CANLF_9615 and tr_A0A2U3VDQ5_A0A2U3VDQ5_ODORO_9708 are exactly identical!
WARNING: Sequences tr_J9NSD4_J9NSD4_CANLF_9615 and tr_A0A2U3Y5R3_A0A2U3Y5R3_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_J9NSD4_J9NSD4_CANLF_9615 and tr_A0A2Y9J759_A0A2Y9J759_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_A0A158NSP6_A0A158NSP6_ATTCE_12957 and tr_A0A151HYI8_A0A151HYI8_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A0K0JGC3_A0A0K0JGC3_BRUMA_6279 and tr_A0A0R3QAT7_A0A0R3QAT7_9BILA_42155 are exactly identical!
WARNING: Sequences tr_E5SQZ0_E5SQZ0_TRISP_6334 and tr_A0A0V0S1X9_A0A0V0S1X9_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5SQZ0_E5SQZ0_TRISP_6334 and tr_A0A0V1KQV6_A0A0V1KQV6_9BILA_6335 are exactly identical!
WARNING: Sequences tr_E5SQZ0_E5SQZ0_TRISP_6334 and tr_A0A0V0ZUV0_A0A0V0ZUV0_9BILA_990121 are exactly identical!
WARNING: Sequences tr_B3RY75_B3RY75_TRIAD_10228 and tr_A0A369SH70_A0A369SH70_9METZ_287889 are exactly identical!
WARNING: Sequences tr_R1EDA4_R1EDA4_EMIHU_2903 and tr_R1F164_R1F164_EMIHU_2903 are exactly identical!
WARNING: Sequences tr_A0A0V1DDA1_A0A0V1DDA1_TRIBR_45882 and tr_A0A0V0V304_A0A0V0V304_9BILA_181606 are exactly identical!
WARNING: Sequences tr_A0A0V1DDA1_A0A0V1DDA1_TRIBR_45882 and tr_A0A0V0TLP5_A0A0V0TLP5_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A0V1MEP5_A0A0V1MEP5_9BILA_268474 and tr_A0A0V1HLZ3_A0A0V1HLZ3_9BILA_268475 are exactly identical!
WARNING: Sequences tr_A0A1S3MU45_A0A1S3MU45_SALSA_8030 and tr_A0A060YLZ9_A0A060YLZ9_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A226NF89_A0A226NF89_CALSU_9009 and tr_A0A226PGL3_A0A226PGL3_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2U3UZD9_A0A2U3UZD9_TURTR_9739 and tr_A0A2Y9MHE6_A0A2Y9MHE6_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U3UZD9_A0A2U3UZD9_TURTR_9739 and tr_A0A2Y9F3H0_A0A2Y9F3H0_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2U3UZD9_A0A2U3UZD9_TURTR_9739 and tr_A0A384AYX8_A0A384AYX8_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 30

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N5M9/3_mltree/Q8N5M9.raxml.reduced.phy

Alignment comprises 1 partitions and 196 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 196 / 196
Gaps: 9.83 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N5M9/3_mltree/Q8N5M9.raxml.rba

Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 199 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 196 / 15680
[00:00:00] Data distribution: max. searches per worker: 5

Starting ML tree search with 20 distinct starting trees

[00:00:00 -60384.332099] Initial branch length optimization
[00:00:00 -43663.063364] Model parameter optimization (eps = 10.000000)
[00:00:11 -43441.632728] AUTODETECT spr round 1 (radius: 5)
[00:00:20 -31633.480655] AUTODETECT spr round 2 (radius: 10)
[00:00:33 -24412.586880] AUTODETECT spr round 3 (radius: 15)
[00:00:48 -19999.572448] AUTODETECT spr round 4 (radius: 20)
[00:01:03 -19452.049963] AUTODETECT spr round 5 (radius: 25)
[00:01:20 -19452.034634] SPR radius for FAST iterations: 20 (autodetect)
[00:01:20 -19452.034634] Model parameter optimization (eps = 3.000000)
[00:01:30 -19331.897145] FAST spr round 1 (radius: 20)
[00:01:39 -17727.614624] FAST spr round 2 (radius: 20)
[00:01:49 -17665.199197] FAST spr round 3 (radius: 20)
[00:01:56 -17662.733515] FAST spr round 4 (radius: 20)
[00:02:03 -17660.871111] FAST spr round 5 (radius: 20)
[00:02:10 -17660.870278] Model parameter optimization (eps = 1.000000)
[00:02:16 -17644.734700] SLOW spr round 1 (radius: 5)
[00:02:30 -17637.233851] SLOW spr round 2 (radius: 5)
[00:02:44 -17636.945662] SLOW spr round 3 (radius: 5)
[00:02:57 -17636.945455] SLOW spr round 4 (radius: 10)
[00:03:10 -17636.945429] SLOW spr round 5 (radius: 15)
[00:03:31 -17636.945428] SLOW spr round 6 (radius: 20)
[00:03:54 -17636.945428] SLOW spr round 7 (radius: 25)
[00:04:20 -17636.945428] Model parameter optimization (eps = 0.100000)
[00:04:20] [worker #3] ML tree search #4, logLikelihood: -17628.195124

[00:04:22] [worker #0] ML tree search #1, logLikelihood: -17636.897860

[00:04:22 -59780.705547] Initial branch length optimization
[00:04:22 -43132.076044] Model parameter optimization (eps = 10.000000)
[00:04:22] [worker #2] ML tree search #3, logLikelihood: -17635.769755
[00:04:31] [worker #1] ML tree search #2, logLikelihood: -17630.612932
[00:04:33 -42895.425324] AUTODETECT spr round 1 (radius: 5)
[00:04:43 -30286.475637] AUTODETECT spr round 2 (radius: 10)
[00:04:55 -23242.950676] AUTODETECT spr round 3 (radius: 15)
[00:05:10 -19737.983901] AUTODETECT spr round 4 (radius: 20)
[00:05:29 -19709.908010] AUTODETECT spr round 5 (radius: 25)
[00:05:46 -19709.887735] SPR radius for FAST iterations: 20 (autodetect)
[00:05:46 -19709.887735] Model parameter optimization (eps = 3.000000)
[00:05:55 -19610.679560] FAST spr round 1 (radius: 20)
[00:06:04 -17708.927158] FAST spr round 2 (radius: 20)
[00:06:14 -17652.862210] FAST spr round 3 (radius: 20)
[00:06:22 -17645.193798] FAST spr round 4 (radius: 20)
[00:06:29 -17645.193513] Model parameter optimization (eps = 1.000000)
[00:06:34 -17642.174099] SLOW spr round 1 (radius: 5)
[00:06:48 -17638.071397] SLOW spr round 2 (radius: 5)
[00:07:01 -17637.266561] SLOW spr round 3 (radius: 5)
[00:07:14 -17637.266415] SLOW spr round 4 (radius: 10)
[00:07:26 -17637.266406] SLOW spr round 5 (radius: 15)
[00:07:49 -17637.266403] SLOW spr round 6 (radius: 20)
[00:08:17 -17637.266403] SLOW spr round 7 (radius: 25)
[00:08:46] [worker #3] ML tree search #8, logLikelihood: -17632.086282
[00:08:46 -17632.527553] SLOW spr round 8 (radius: 5)
[00:09:07 -17631.814931] SLOW spr round 9 (radius: 5)
[00:09:25 -17631.814911] SLOW spr round 10 (radius: 10)
[00:09:29] [worker #2] ML tree search #7, logLikelihood: -17629.686163
[00:09:39 -17631.814909] SLOW spr round 11 (radius: 15)
[00:10:00 -17631.814909] SLOW spr round 12 (radius: 20)
[00:10:29 -17631.814909] SLOW spr round 13 (radius: 25)
[00:10:34] [worker #1] ML tree search #6, logLikelihood: -17627.185671
[00:10:58 -17631.814909] Model parameter optimization (eps = 0.100000)

[00:10:59] [worker #0] ML tree search #5, logLikelihood: -17631.767063

[00:10:59 -59967.692441] Initial branch length optimization
[00:11:00 -43225.794449] Model parameter optimization (eps = 10.000000)
[00:11:11 -43027.287576] AUTODETECT spr round 1 (radius: 5)
[00:11:20 -30353.949502] AUTODETECT spr round 2 (radius: 10)
[00:11:32 -24996.965773] AUTODETECT spr round 3 (radius: 15)
[00:11:48 -21428.332107] AUTODETECT spr round 4 (radius: 20)
[00:12:08 -21290.454731] AUTODETECT spr round 5 (radius: 25)
[00:12:23 -21268.396534] SPR radius for FAST iterations: 25 (autodetect)
[00:12:23 -21268.396534] Model parameter optimization (eps = 3.000000)
[00:12:32 -21162.540940] FAST spr round 1 (radius: 25)
[00:12:46 -17783.155548] FAST spr round 2 (radius: 25)
[00:12:56 -17720.367188] FAST spr round 3 (radius: 25)
[00:13:04] [worker #3] ML tree search #12, logLikelihood: -17630.527760
[00:13:05 -17662.914939] FAST spr round 4 (radius: 25)
[00:13:12 -17662.914855] Model parameter optimization (eps = 1.000000)
[00:13:18 -17641.948585] SLOW spr round 1 (radius: 5)
[00:13:33 -17635.753139] SLOW spr round 2 (radius: 5)
[00:13:47 -17635.555170] SLOW spr round 3 (radius: 5)
[00:14:00 -17635.554801] SLOW spr round 4 (radius: 10)
[00:14:13 -17635.554763] SLOW spr round 5 (radius: 15)
[00:14:14] [worker #2] ML tree search #11, logLikelihood: -17631.555552
[00:14:35 -17635.554762] SLOW spr round 6 (radius: 20)
[00:14:36] [worker #1] ML tree search #10, logLikelihood: -17638.068005
[00:15:02 -17635.554762] SLOW spr round 7 (radius: 25)
[00:15:30 -17635.554762] Model parameter optimization (eps = 0.100000)

[00:15:33] [worker #0] ML tree search #9, logLikelihood: -17635.340078

[00:15:33 -61260.439807] Initial branch length optimization
[00:15:34 -44480.190625] Model parameter optimization (eps = 10.000000)
[00:15:45 -44268.394325] AUTODETECT spr round 1 (radius: 5)
[00:15:54 -30529.763796] AUTODETECT spr round 2 (radius: 10)
[00:16:07 -23382.336067] AUTODETECT spr round 3 (radius: 15)
[00:16:22 -21552.591732] AUTODETECT spr round 4 (radius: 20)
[00:16:39 -19945.148089] AUTODETECT spr round 5 (radius: 25)
[00:16:55 -19899.950295] SPR radius for FAST iterations: 25 (autodetect)
[00:16:55 -19899.950295] Model parameter optimization (eps = 3.000000)
[00:17:04 -19800.881957] FAST spr round 1 (radius: 25)
[00:17:10] [worker #3] ML tree search #16, logLikelihood: -17627.991829
[00:17:16 -17726.946087] FAST spr round 2 (radius: 25)
[00:17:26 -17652.244598] FAST spr round 3 (radius: 25)
[00:17:35 -17643.842018] FAST spr round 4 (radius: 25)
[00:17:42 -17643.841121] Model parameter optimization (eps = 1.000000)
[00:17:46 -17630.188364] SLOW spr round 1 (radius: 5)
[00:18:00 -17627.333444] SLOW spr round 2 (radius: 5)
[00:18:13 -17627.331638] SLOW spr round 3 (radius: 10)
[00:18:26 -17627.331443] SLOW spr round 4 (radius: 15)
[00:18:45 -17627.331429] SLOW spr round 5 (radius: 20)
[00:19:08 -17627.331428] SLOW spr round 6 (radius: 25)
[00:19:10] [worker #1] ML tree search #14, logLikelihood: -17626.817907
[00:19:16] [worker #2] ML tree search #15, logLikelihood: -17630.703697
[00:19:31 -17627.331428] Model parameter optimization (eps = 0.100000)

[00:19:34] [worker #0] ML tree search #13, logLikelihood: -17627.061545

[00:19:34 -60223.871685] Initial branch length optimization
[00:19:34 -43585.515448] Model parameter optimization (eps = 10.000000)
[00:19:46 -43365.354151] AUTODETECT spr round 1 (radius: 5)
[00:19:54 -29501.965923] AUTODETECT spr round 2 (radius: 10)
[00:20:06 -24354.212767] AUTODETECT spr round 3 (radius: 15)
[00:20:20 -20079.584259] AUTODETECT spr round 4 (radius: 20)
[00:20:39 -20001.980718] AUTODETECT spr round 5 (radius: 25)
[00:20:56 -20001.962793] SPR radius for FAST iterations: 20 (autodetect)
[00:20:56 -20001.962793] Model parameter optimization (eps = 3.000000)
[00:21:03 -19913.262902] FAST spr round 1 (radius: 20)
[00:21:16 -18032.164391] FAST spr round 2 (radius: 20)
[00:21:28 -17684.735364] FAST spr round 3 (radius: 20)
[00:21:38 -17652.009908] FAST spr round 4 (radius: 20)
[00:21:39] [worker #3] ML tree search #20, logLikelihood: -17626.694665
[00:21:45 -17647.803728] FAST spr round 5 (radius: 20)
[00:21:52 -17647.803684] Model parameter optimization (eps = 1.000000)
[00:21:57 -17636.502439] SLOW spr round 1 (radius: 5)
[00:22:11 -17633.251268] SLOW spr round 2 (radius: 5)
[00:22:26 -17630.617213] SLOW spr round 3 (radius: 5)
[00:22:39 -17630.391788] SLOW spr round 4 (radius: 5)
[00:22:52 -17630.391762] SLOW spr round 5 (radius: 10)
[00:23:05 -17630.391749] SLOW spr round 6 (radius: 15)
[00:23:27 -17630.391748] SLOW spr round 7 (radius: 20)
[00:23:28] [worker #2] ML tree search #19, logLikelihood: -17632.404619
[00:23:54 -17630.391748] SLOW spr round 8 (radius: 25)
[00:24:14] [worker #1] ML tree search #18, logLikelihood: -17634.613160
[00:24:19 -17630.391748] Model parameter optimization (eps = 0.100000)

[00:24:21] [worker #0] ML tree search #17, logLikelihood: -17630.268554


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.214513,0.793803) (0.287551,1.229557) (0.378036,0.850274) (0.119901,1.290445) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -17626.694665

AIC score: 36055.389330 / AICc score: 358459.389330 / BIC score: 37369.913308
Free parameters (model + branch lengths): 401

WARNING: Number of free parameters (K=401) is larger than alignment size (n=196).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 49 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N5M9/3_mltree/Q8N5M9.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N5M9/3_mltree/Q8N5M9.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N5M9/3_mltree/Q8N5M9.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N5M9/3_mltree/Q8N5M9.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N5M9/3_mltree/Q8N5M9.raxml.log

Analysis started: 02-Jul-2021 16:08:06 / finished: 02-Jul-2021 16:32:28

Elapsed time: 1461.969 seconds

Consumed energy: 136.600 Wh