RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 30-Jun-2021 18:27:45 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N2E2/2_msa/Q8N2E2_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N2E2/3_mltree/Q8N2E2 --seed 2 --threads 2 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N2E2/2_msa/Q8N2E2_trimmed_msa.fasta
[00:00:00] Loaded alignment with 955 taxa and 85 sites

WARNING: Sequences tr_A0A1D5PHP9_A0A1D5PHP9_CHICK_9031 and tr_U3IZU1_U3IZU1_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A1D5PHP9_A0A1D5PHP9_CHICK_9031 and tr_A0A099ZL94_A0A099ZL94_TINGU_94827 are exactly identical!
WARNING: Sequences tr_F1NRS3_F1NRS3_CHICK_9031 and tr_G1NHX6_G1NHX6_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1NRS3_F1NRS3_CHICK_9031 and tr_A0A1V4JKR1_A0A1V4JKR1_PATFA_372326 are exactly identical!
WARNING: Sequences tr_F1NRS3_F1NRS3_CHICK_9031 and tr_A0A226P259_A0A226P259_COLVI_9014 are exactly identical!
WARNING: Sequences tr_F1NZ70_F1NZ70_CHICK_9031 and tr_A0A226NHG9_A0A226NHG9_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F1NZ70_F1NZ70_CHICK_9031 and tr_A0A226P9S8_A0A226P9S8_COLVI_9014 are exactly identical!
WARNING: Sequences tr_F1P0R6_F1P0R6_CHICK_9031 and tr_A0A226N1G3_A0A226N1G3_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F1P0R6_F1P0R6_CHICK_9031 and tr_A0A226PS70_A0A226PS70_COLVI_9014 are exactly identical!
WARNING: Sequences sp_Q9W6V6_TEN1_CHICK_9031 and tr_A0A093IJB6_A0A093IJB6_DRYPU_118200 are exactly identical!
WARNING: Sequences sp_Q6DFV8_VWDE_MOUSE_10090 and tr_A0A060W0D3_A0A060W0D3_ONCMY_8022 are exactly identical!
WARNING: Sequences sp_Q9WUA1_WIF1_MOUSE_10090 and tr_G1PCL2_G1PCL2_MYOLU_59463 are exactly identical!
WARNING: Sequences sp_Q9WUA1_WIF1_MOUSE_10090 and tr_I3MXG5_I3MXG5_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q9WUA1_WIF1_MOUSE_10090 and tr_A0A1S2ZBP4_A0A1S2ZBP4_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_Q9WUA1_WIF1_MOUSE_10090 and tr_A0A1S3FH83_A0A1S3FH83_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_M3YIS6_M3YIS6_MUSPF_9669 and tr_A0A2Y9JFB7_A0A2Y9JFB7_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YRJ4_M3YRJ4_MUSPF_9669 and tr_A0A2Y9JDL9_A0A2Y9JDL9_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Z1F0_M3Z1F0_MUSPF_9669 and tr_A0A2U3X0W2_A0A2U3X0W2_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3Z1F0_M3Z1F0_MUSPF_9669 and tr_A0A2Y9IR35_A0A2Y9IR35_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_A0A0B4KFD1_A0A0B4KFD1_DROME_7227 and tr_B4HRL7_B4HRL7_DROSE_7238 are exactly identical!
WARNING: Sequences tr_G1QS54_G1QS54_NOMLE_61853 and tr_G3QJF3_G3QJF3_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1QS54_G1QS54_NOMLE_61853 and tr_H2NHY1_H2NHY1_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1QS54_G1QS54_NOMLE_61853 and tr_H2Q6E5_H2Q6E5_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1QS54_G1QS54_NOMLE_61853 and sp_Q9Y5W5_WIF1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1QS54_G1QS54_NOMLE_61853 and tr_A0A096NXI6_A0A096NXI6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1QS54_G1QS54_NOMLE_61853 and tr_A0A0D9QWL6_A0A0D9QWL6_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1QS54_G1QS54_NOMLE_61853 and tr_A0A2K6BGD5_A0A2K6BGD5_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1QS54_G1QS54_NOMLE_61853 and tr_A0A2K5YUB8_A0A2K5YUB8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1QS54_G1QS54_NOMLE_61853 and tr_A0A2R9AG94_A0A2R9AG94_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1R0C4_G1R0C4_NOMLE_61853 and tr_G3QN32_G3QN32_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1R0C4_G1R0C4_NOMLE_61853 and sp_Q04721_NOTC2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1R0C4_G1R0C4_NOMLE_61853 and tr_A0A2R9AAN4_A0A2R9AAN4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3RAI2_G3RAI2_GORGO_9595 and tr_A0A2I3SRH8_A0A2I3SRH8_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RAI2_G3RAI2_GORGO_9595 and sp_Q8TER0_SNED1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RAI2_G3RAI2_GORGO_9595 and tr_A0A2R9BPX2_A0A2R9BPX2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1NC99_G1NC99_MELGA_9103 and tr_A0A226MQ03_A0A226MQ03_CALSU_9009 are exactly identical!
WARNING: Sequences tr_G1KNT2_G1KNT2_ANOCA_28377 and tr_D4AEB5_D4AEB5_RAT_10116 are exactly identical!
WARNING: Sequences tr_B5DM97_B5DM97_DROPS_46245 and tr_B4GYL6_B4GYL6_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B5DZ34_B5DZ34_DROPS_46245 and tr_B4GDB6_B4GDB6_DROPE_7234 are exactly identical!
WARNING: Sequences tr_E2R4E3_E2R4E3_CANLF_9615 and tr_K7GQ27_K7GQ27_PIG_9823 are exactly identical!
WARNING: Sequences tr_E2R4E3_E2R4E3_CANLF_9615 and tr_M3WCH2_M3WCH2_FELCA_9685 are exactly identical!
WARNING: Sequences tr_F1PQB7_F1PQB7_CANLF_9615 and tr_H0UV60_H0UV60_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_F1PQB7_F1PQB7_CANLF_9615 and tr_A0A091EFK8_A0A091EFK8_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_F1PQB7_F1PQB7_CANLF_9615 and tr_A0A3Q0DWR4_A0A3Q0DWR4_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_F1PQB7_F1PQB7_CANLF_9615 and tr_A0A3Q0CUZ0_A0A3Q0CUZ0_MESAU_10036 are exactly identical!
WARNING: Sequences tr_H2R7G3_H2R7G3_PANTR_9598 and sp_P22105_TENX_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2R7G3_H2R7G3_PANTR_9598 and tr_A0A2R9CM88_A0A2R9CM88_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F6VE35_F6VE35_MONDO_13616 and tr_G3WSN9_G3WSN9_SARHA_9305 are exactly identical!
WARNING: Sequences tr_W5NYS5_W5NYS5_SHEEP_9940 and sp_Q6IN38_WIF1_RAT_10116 are exactly identical!
WARNING: Sequences tr_W5NYS5_W5NYS5_SHEEP_9940 and tr_E1BNM8_E1BNM8_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5NYS5_W5NYS5_SHEEP_9940 and tr_A0A1U7QLN1_A0A1U7QLN1_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A088A0C8_A0A088A0C8_APIME_7460 and tr_A0A2A3EQ91_A0A2A3EQ91_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A088AC19_A0A088AC19_APIME_7460 and tr_A0A154PRZ4_A0A154PRZ4_9HYME_178035 are exactly identical!
WARNING: Sequences tr_A0A158NP33_A0A158NP33_ATTCE_12957 and tr_A0A151X8F5_A0A151X8F5_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A158NP33_A0A158NP33_ATTCE_12957 and tr_A0A195DWW8_A0A195DWW8_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NP33_A0A158NP33_ATTCE_12957 and tr_A0A195BZE4_A0A195BZE4_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NP33_A0A158NP33_ATTCE_12957 and tr_A0A151IBA4_A0A151IBA4_9HYME_456900 are exactly identical!
WARNING: Sequences tr_A0A158NXJ0_A0A158NXJ0_ATTCE_12957 and tr_F4WQ11_F4WQ11_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A158NXJ0_A0A158NXJ0_ATTCE_12957 and tr_A0A195BME4_A0A195BME4_9HYME_520822 are exactly identical!
WARNING: Sequences tr_H2VAX1_H2VAX1_TAKRU_31033 and tr_H3C784_H3C784_TETNG_99883 are exactly identical!
WARNING: Sequences tr_A0A1D5R8K4_A0A1D5R8K4_MACMU_9544 and tr_A0A0D9RA30_A0A0D9RA30_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A1D5R8K4_A0A1D5R8K4_MACMU_9544 and tr_A0A2K5LS95_A0A2K5LS95_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5R8K4_A0A1D5R8K4_MACMU_9544 and tr_A0A2K6DGI5_A0A2K6DGI5_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6WRW3_F6WRW3_MACMU_9544 and tr_G7P198_G7P198_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6WRW3_F6WRW3_MACMU_9544 and tr_A0A096MVB5_A0A096MVB5_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6WRW3_F6WRW3_MACMU_9544 and tr_A0A0D9RLI0_A0A0D9RLI0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F6WRW3_F6WRW3_MACMU_9544 and tr_A0A2K6B378_A0A2K6B378_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6WRW3_F6WRW3_MACMU_9544 and tr_A0A2K5XC60_A0A2K5XC60_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7BIX5_F7BIX5_MACMU_9544 and tr_G7PIY7_G7PIY7_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7ECN9_F7ECN9_MACMU_9544 and tr_G7P2F2_G7P2F2_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7ECN9_F7ECN9_MACMU_9544 and tr_A0A2K5NEL5_A0A2K5NEL5_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7ECN9_F7ECN9_MACMU_9544 and tr_A0A2K6DI54_A0A2K6DI54_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7ECN9_F7ECN9_MACMU_9544 and tr_A0A2K5Y4R3_A0A2K5Y4R3_MANLE_9568 are exactly identical!
WARNING: Sequences tr_E5SSL0_E5SSL0_TRISP_6334 and tr_A0A0V0S246_A0A0V0S246_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5SSL0_E5SSL0_TRISP_6334 and tr_A0A0V1CJN0_A0A0V1CJN0_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_E5SSL0_E5SSL0_TRISP_6334 and tr_A0A0V0W5R7_A0A0V0W5R7_9BILA_92179 are exactly identical!
WARNING: Sequences tr_E5SSL0_E5SSL0_TRISP_6334 and tr_A0A0V0VAW0_A0A0V0VAW0_9BILA_181606 are exactly identical!
WARNING: Sequences tr_E5SSL0_E5SSL0_TRISP_6334 and tr_A0A0V1L3G8_A0A0V1L3G8_9BILA_6335 are exactly identical!
WARNING: Sequences tr_E5SSL0_E5SSL0_TRISP_6334 and tr_A0A0V0ZJP6_A0A0V0ZJP6_9BILA_990121 are exactly identical!
WARNING: Sequences tr_E5SSL0_E5SSL0_TRISP_6334 and tr_A0A0V1NMA4_A0A0V1NMA4_9BILA_92180 are exactly identical!
WARNING: Sequences tr_E5SSL0_E5SSL0_TRISP_6334 and tr_A0A0V0TGX4_A0A0V0TGX4_9BILA_144512 are exactly identical!
WARNING: Sequences tr_G3TAY0_G3TAY0_LOXAF_9785 and tr_D2HDL2_D2HDL2_AILME_9646 are exactly identical!
WARNING: Sequences tr_G3TAY0_G3TAY0_LOXAF_9785 and tr_A0A2U3XKX5_A0A2U3XKX5_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_H0Z6Z3_H0Z6Z3_TAEGU_59729 and tr_U3JG63_U3JG63_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0Z6Z3_H0Z6Z3_TAEGU_59729 and tr_A0A218V5U7_A0A218V5U7_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H1A3Q6_H1A3Q6_TAEGU_59729 and tr_A0A218V5E8_A0A218V5E8_9PASE_299123 are exactly identical!
WARNING: Sequences tr_F4X157_F4X157_ACREC_103372 and tr_A0A195CT13_A0A195CT13_9HYME_456900 are exactly identical!
WARNING: Sequences tr_F7BU44_F7BU44_XENTR_8364 and tr_A0A1L8GYI2_A0A1L8GYI2_XENLA_8355 are exactly identical!
WARNING: Sequences tr_A0A287AVF2_A0A287AVF2_PIG_9823 and sp_Q29116_TENA_PIG_9823 are exactly identical!
WARNING: Sequences tr_B3RZW5_B3RZW5_TRIAD_10228 and tr_A0A369S2T8_A0A369S2T8_9METZ_287889 are exactly identical!
WARNING: Sequences tr_T1KYK2_T1KYK2_TETUR_32264 and tr_T1KYK7_T1KYK7_TETUR_32264 are exactly identical!
WARNING: Sequences tr_U3K5W2_U3K5W2_FICAL_59894 and tr_A0A091F9B7_A0A091F9B7_CORBR_85066 are exactly identical!
WARNING: Sequences tr_U3K5W2_U3K5W2_FICAL_59894 and tr_A0A087R5L3_A0A087R5L3_APTFO_9233 are exactly identical!
WARNING: Sequences tr_U3K5W2_U3K5W2_FICAL_59894 and tr_A0A218V3W0_A0A218V3W0_9PASE_299123 are exactly identical!
WARNING: Sequences tr_R0K4D5_R0K4D5_ANAPL_8839 and tr_A0A0Q3PIM8_A0A0Q3PIM8_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_R0K4D5_R0K4D5_ANAPL_8839 and tr_A0A091ILZ2_A0A091ILZ2_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_R0K4D5_R0K4D5_ANAPL_8839 and tr_A0A087R5F6_A0A087R5F6_APTFO_9233 are exactly identical!
WARNING: Sequences tr_R0K4D5_R0K4D5_ANAPL_8839 and tr_A0A093HRY2_A0A093HRY2_STRCA_441894 are exactly identical!
WARNING: Sequences tr_R0K4D5_R0K4D5_ANAPL_8839 and tr_A0A0A0A2M9_A0A0A0A2M9_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_R0K4D5_R0K4D5_ANAPL_8839 and tr_A0A093GH85_A0A093GH85_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_R0K4D5_R0K4D5_ANAPL_8839 and tr_A0A091HXV3_A0A091HXV3_CALAN_9244 are exactly identical!
WARNING: Sequences tr_U3IAJ8_U3IAJ8_ANAPL_8839 and tr_A0A2I0M3N0_A0A2I0M3N0_COLLI_8932 are exactly identical!
WARNING: Sequences tr_U3IAJ8_U3IAJ8_ANAPL_8839 and tr_A0A1V4J6M3_A0A1V4J6M3_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A0D9R0L7_A0A0D9R0L7_CHLSB_60711 and tr_A0A2K5KT54_A0A2K5KT54_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A0D9R0L7_A0A0D9R0L7_CHLSB_60711 and tr_A0A2K6DRV4_A0A2K6DRV4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A0D9R0L7_A0A0D9R0L7_CHLSB_60711 and tr_A0A2K5YFS4_A0A2K5YFS4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A0L0C1L6_A0A0L0C1L6_LUCCU_7375 and tr_A0A0L0CHG5_A0A0L0CHG5_LUCCU_7375 are exactly identical!
WARNING: Sequences tr_A0A151NNA2_A0A151NNA2_ALLMI_8496 and tr_A0A3Q0GNH8_A0A3Q0GNH8_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151NUP3_A0A151NUP3_ALLMI_8496 and tr_A0A1U8DKD9_A0A1U8DKD9_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151PF32_A0A151PF32_ALLMI_8496 and tr_A0A1U7RF52_A0A1U7RF52_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A091F9S0_A0A091F9S0_CORBR_85066 and tr_A0A091GMH6_A0A091GMH6_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A091F9S0_A0A091F9S0_CORBR_85066 and tr_A0A093GVK7_A0A093GVK7_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A091UPW6_A0A091UPW6_NIPNI_128390 and tr_A0A087R4Q1_A0A087R4Q1_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091USL9_A0A091USL9_NIPNI_128390 and tr_A0A087R5F8_A0A087R5F8_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091USL9_A0A091USL9_NIPNI_128390 and tr_A0A091FQ46_A0A091FQ46_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A091USL9_A0A091USL9_NIPNI_128390 and tr_A0A0A0A5D8_A0A0A0A5D8_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091UVJ0_A0A091UVJ0_NIPNI_128390 and tr_A0A087R5F7_A0A087R5F7_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091UWV6_A0A091UWV6_NIPNI_128390 and tr_A0A091WEA8_A0A091WEA8_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A091UX43_A0A091UX43_NIPNI_128390 and tr_A0A091FHR9_A0A091FHR9_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A091UX43_A0A091UX43_NIPNI_128390 and tr_A0A0A0AR87_A0A0A0AR87_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A2I0MJ75_A0A2I0MJ75_COLLI_8932 and tr_A0A1V4J971_A0A1V4J971_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A0V0RQN8_A0A0V0RQN8_9BILA_6336 and tr_A0A0V1DF98_A0A0V1DF98_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_A0A0V0RQN8_A0A0V0RQN8_9BILA_6336 and tr_A0A0V0WHN6_A0A0V0WHN6_9BILA_92179 are exactly identical!
WARNING: Sequences tr_A0A0V0RQN8_A0A0V0RQN8_9BILA_6336 and tr_A0A0V0WKH2_A0A0V0WKH2_9BILA_92179 are exactly identical!
WARNING: Sequences tr_A0A0V0RQN8_A0A0V0RQN8_9BILA_6336 and tr_A0A0V0V0K0_A0A0V0V0K0_9BILA_181606 are exactly identical!
WARNING: Sequences tr_A0A0V0RQN8_A0A0V0RQN8_9BILA_6336 and tr_A0A0V1LSM2_A0A0V1LSM2_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A0V0RQN8_A0A0V0RQN8_9BILA_6336 and tr_A0A0V1PGV4_A0A0V1PGV4_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V0RQN8_A0A0V0RQN8_9BILA_6336 and tr_A0A0V0U2J6_A0A0V0U2J6_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A0V1MR48_A0A0V1MR48_9BILA_268474 and tr_A0A0V1H776_A0A0V1H776_9BILA_268475 are exactly identical!
WARNING: Sequences tr_A0A1S3NZ24_A0A1S3NZ24_SALSA_8030 and tr_A0A1S3RUU0_A0A1S3RUU0_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3NZ24_A0A1S3NZ24_SALSA_8030 and tr_A0A060VYG0_A0A060VYG0_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3PBT4_A0A1S3PBT4_SALSA_8030 and tr_A0A060XE55_A0A060XE55_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1D1VH85_A0A1D1VH85_RAMVA_947166 and tr_A0A1D1VJP2_A0A1D1VJP2_RAMVA_947166 are exactly identical!
WARNING: Sequences tr_A0A226MFV5_A0A226MFV5_CALSU_9009 and tr_A0A226PMP3_A0A226PMP3_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A226MPY1_A0A226MPY1_CALSU_9009 and tr_A0A226NQF2_A0A226NQF2_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A226N6Q2_A0A226N6Q2_CALSU_9009 and tr_A0A226PQJ6_A0A226PQJ6_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A226N6W4_A0A226N6W4_CALSU_9009 and tr_A0A226PS05_A0A226PS05_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2D0PMI0_A0A2D0PMI0_ICTPU_7998 and tr_A0A2D0PMI5_A0A2D0PMI5_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0PMI0_A0A2D0PMI0_ICTPU_7998 and tr_A0A2D0PP65_A0A2D0PP65_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0PMI0_A0A2D0PMI0_ICTPU_7998 and tr_A0A2D0PQU6_A0A2D0PQU6_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0PMI0_A0A2D0PMI0_ICTPU_7998 and tr_A0A2D0PQV1_A0A2D0PQV1_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0PMI0_A0A2D0PMI0_ICTPU_7998 and tr_A0A2D0PRU9_A0A2D0PRU9_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0PV16_A0A2D0PV16_ICTPU_7998 and tr_A0A2D0PXK5_A0A2D0PXK5_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2U3V6F1_A0A2U3V6F1_TURTR_9739 and tr_A0A2Y9NY32_A0A2Y9NY32_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4C6K8_A0A2U4C6K8_TURTR_9739 and tr_A0A2Y9PVG9_A0A2Y9PVG9_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4CQZ0_A0A2U4CQZ0_TURTR_9739 and tr_A0A2Y9MXZ6_A0A2Y9MXZ6_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4CQZ0_A0A2U4CQZ0_TURTR_9739 and tr_A0A2Y9SQL3_A0A2Y9SQL3_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2Y9NWE7_A0A2Y9NWE7_DELLE_9749 and tr_A0A2Y9SVH2_A0A2Y9SVH2_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2Y9NWE7_A0A2Y9NWE7_DELLE_9749 and tr_A0A384BFN6_A0A384BFN6_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 149

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N2E2/3_mltree/Q8N2E2.raxml.reduced.phy

Alignment comprises 1 partitions and 85 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 85 / 85
Gaps: 9.44 %
Invariant sites: 2.35 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N2E2/3_mltree/Q8N2E2.raxml.rba

Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 955 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 85 / 6800
[00:00:00] Data distribution: max. searches per worker: 10

Starting ML tree search with 20 distinct starting trees

[00:00:00 -134539.054242] Initial branch length optimization
[00:00:02 -111962.674820] Model parameter optimization (eps = 10.000000)
[00:00:47 -111282.685355] AUTODETECT spr round 1 (radius: 5)
[00:02:28 -86616.938005] AUTODETECT spr round 2 (radius: 10)
[00:04:19 -66640.108461] AUTODETECT spr round 3 (radius: 15)
[00:06:29 -56242.884996] AUTODETECT spr round 4 (radius: 20)
[00:09:48 -52098.603772] AUTODETECT spr round 5 (radius: 25)
[00:12:54 -48791.849520] SPR radius for FAST iterations: 25 (autodetect)
[00:12:54 -48791.849520] Model parameter optimization (eps = 3.000000)
[00:13:16 -48698.183327] FAST spr round 1 (radius: 25)
[00:16:03 -42563.793777] FAST spr round 2 (radius: 25)
[00:18:13 -42054.178876] FAST spr round 3 (radius: 25)
[00:20:01 -41861.069844] FAST spr round 4 (radius: 25)
[00:21:39 -41832.332530] FAST spr round 5 (radius: 25)
[00:23:06 -41798.125520] FAST spr round 6 (radius: 25)
[00:24:39 -41715.839958] FAST spr round 7 (radius: 25)
[00:26:11 -41365.449488] FAST spr round 8 (radius: 25)
[00:27:41 -41281.420827] FAST spr round 9 (radius: 25)
[00:28:59 -41279.284808] FAST spr round 10 (radius: 25)
[00:30:17 -41279.284040] Model parameter optimization (eps = 1.000000)
[00:30:27 -41278.062072] SLOW spr round 1 (radius: 5)
[00:32:06 -41267.394330] SLOW spr round 2 (radius: 5)
[00:33:44 -41264.022849] SLOW spr round 3 (radius: 5)
[00:35:21 -41261.435541] SLOW spr round 4 (radius: 5)
[00:36:56 -41261.408533] SLOW spr round 5 (radius: 10)
[00:38:28 -41260.842625] SLOW spr round 6 (radius: 5)
[00:40:20 -41260.676663] SLOW spr round 7 (radius: 5)
[00:42:03 -41260.262727] SLOW spr round 8 (radius: 5)
[00:43:41 -41259.498257] SLOW spr round 9 (radius: 5)
[00:45:15 -41259.498242] SLOW spr round 10 (radius: 10)
[00:46:46 -41259.291522] SLOW spr round 11 (radius: 5)
[00:48:38 -41259.290646] SLOW spr round 12 (radius: 10)
[00:50:21 -41259.290571] SLOW spr round 13 (radius: 15)
[00:52:39 -41250.869570] SLOW spr round 14 (radius: 5)
[00:54:35 -41250.148735] SLOW spr round 15 (radius: 5)
[00:56:19 -41250.147950] SLOW spr round 16 (radius: 10)
[00:57:56 -41250.147909] SLOW spr round 17 (radius: 15)
[01:00:14 -41250.147900] SLOW spr round 18 (radius: 20)
[01:03:19 -41248.731637] SLOW spr round 19 (radius: 5)
[01:05:15 -41248.729529] SLOW spr round 20 (radius: 10)
[01:07:04 -41248.729448] SLOW spr round 21 (radius: 15)
[01:09:16 -41248.729418] SLOW spr round 22 (radius: 20)
[01:12:23 -41248.729407] SLOW spr round 23 (radius: 25)
[01:16:16 -41248.460206] SLOW spr round 24 (radius: 5)
[01:18:12 -41247.493700] SLOW spr round 25 (radius: 5)
[01:19:57 -41247.491118] SLOW spr round 26 (radius: 10)
[01:21:35 -41247.490986] SLOW spr round 27 (radius: 15)
[01:23:52 -41247.490970] SLOW spr round 28 (radius: 20)
[01:26:57 -41244.763939] SLOW spr round 29 (radius: 5)
[01:28:54 -41244.763444] SLOW spr round 30 (radius: 10)
[01:30:42 -41244.763402] SLOW spr round 31 (radius: 15)
[01:32:55 -41244.763391] SLOW spr round 32 (radius: 20)
[01:36:03 -41244.763387] SLOW spr round 33 (radius: 25)
[01:39:56 -41244.763381] Model parameter optimization (eps = 0.100000)

[01:40:05] [worker #0] ML tree search #1, logLikelihood: -41244.134896

[01:40:05 -134794.912472] Initial branch length optimization
[01:40:06 -112642.896809] Model parameter optimization (eps = 10.000000)
[01:40:58 -112016.307573] AUTODETECT spr round 1 (radius: 5)
[01:42:44 -87680.016308] AUTODETECT spr round 2 (radius: 10)
[01:44:34 -69382.212943] AUTODETECT spr round 3 (radius: 15)
[01:46:54 -57106.353219] AUTODETECT spr round 4 (radius: 20)
[01:50:27 -50438.548999] AUTODETECT spr round 5 (radius: 25)
[01:53:09 -47824.757402] SPR radius for FAST iterations: 25 (autodetect)
[01:53:09 -47824.757402] Model parameter optimization (eps = 3.000000)
[01:53:30 -47754.686058] FAST spr round 1 (radius: 25)
[01:54:13] [worker #1] ML tree search #2, logLikelihood: -41127.558457
[01:56:03 -41720.952581] FAST spr round 2 (radius: 25)
[01:58:00 -41248.983987] FAST spr round 3 (radius: 25)
[01:59:30 -41194.902367] FAST spr round 4 (radius: 25)
[02:00:54 -41174.090719] FAST spr round 5 (radius: 25)
[02:02:15 -41151.765045] FAST spr round 6 (radius: 25)
[02:03:33 -41146.809596] FAST spr round 7 (radius: 25)
[02:04:50 -41146.808837] Model parameter optimization (eps = 1.000000)
[02:05:01 -41145.474035] SLOW spr round 1 (radius: 5)
[02:06:37 -41125.361332] SLOW spr round 2 (radius: 5)
[02:08:12 -41121.091042] SLOW spr round 3 (radius: 5)
[02:09:43 -41121.090179] SLOW spr round 4 (radius: 10)
[02:11:06 -41110.954156] SLOW spr round 5 (radius: 5)
[02:12:52 -41107.525236] SLOW spr round 6 (radius: 5)
[02:14:32 -41107.428762] SLOW spr round 7 (radius: 10)
[02:16:08 -41107.428638] SLOW spr round 8 (radius: 15)
[02:18:25 -41107.030699] SLOW spr round 9 (radius: 5)
[02:20:15 -41107.027788] SLOW spr round 10 (radius: 10)
[02:21:56 -41106.177492] SLOW spr round 11 (radius: 5)
[02:23:41 -41106.176027] SLOW spr round 12 (radius: 10)
[02:25:20 -41106.175882] SLOW spr round 13 (radius: 15)
[02:27:32 -41106.175788] SLOW spr round 14 (radius: 20)
[02:30:36 -41106.175696] SLOW spr round 15 (radius: 25)
[02:34:22 -41102.542120] SLOW spr round 16 (radius: 5)
[02:36:15 -41102.542027] SLOW spr round 17 (radius: 10)
[02:38:03 -41102.541933] SLOW spr round 18 (radius: 15)
[02:40:11 -41102.541839] SLOW spr round 19 (radius: 20)
[02:43:14 -41102.541743] SLOW spr round 20 (radius: 25)
[02:47:00 -41102.541646] Model parameter optimization (eps = 0.100000)

[02:47:05] [worker #0] ML tree search #3, logLikelihood: -41102.442261

[02:47:05 -134829.702481] Initial branch length optimization
[02:47:07 -112497.269872] Model parameter optimization (eps = 10.000000)
[02:47:39 -111775.605725] AUTODETECT spr round 1 (radius: 5)
[02:49:22 -86138.155575] AUTODETECT spr round 2 (radius: 10)
[02:51:10 -65742.021991] AUTODETECT spr round 3 (radius: 15)
[02:53:21 -55880.679367] AUTODETECT spr round 4 (radius: 20)
[02:56:02 -50145.990707] AUTODETECT spr round 5 (radius: 25)
[02:59:49 -47763.290910] SPR radius for FAST iterations: 25 (autodetect)
[02:59:49 -47763.290910] Model parameter optimization (eps = 3.000000)
[03:00:08 -47655.092685] FAST spr round 1 (radius: 25)
[03:02:38 -41844.173187] FAST spr round 2 (radius: 25)
[03:04:45 -41323.691277] FAST spr round 3 (radius: 25)
[03:06:24 -41253.762856] FAST spr round 4 (radius: 25)
[03:07:53 -41246.194153] FAST spr round 5 (radius: 25)
[03:09:17 -41244.246587] FAST spr round 6 (radius: 25)
[03:10:35 -41242.674264] FAST spr round 7 (radius: 25)
[03:11:55 -41242.674099] Model parameter optimization (eps = 1.000000)
[03:12:08 -41237.367554] SLOW spr round 1 (radius: 5)
[03:13:47 -41225.735985] SLOW spr round 2 (radius: 5)
[03:15:24 -41221.393931] SLOW spr round 3 (radius: 5)
[03:16:57 -41221.393617] SLOW spr round 4 (radius: 10)
[03:18:32 -41218.122750] SLOW spr round 5 (radius: 5)
[03:20:20 -41217.502820] SLOW spr round 6 (radius: 5)
[03:22:02 -41217.502367] SLOW spr round 7 (radius: 10)
[03:23:38 -41217.502340] SLOW spr round 8 (radius: 15)
[03:25:59 -41213.269010] SLOW spr round 9 (radius: 5)
[03:27:53 -41213.072593] SLOW spr round 10 (radius: 5)
[03:29:35 -41213.072143] SLOW spr round 11 (radius: 10)
[03:31:13 -41213.072133] SLOW spr round 12 (radius: 15)
[03:33:33 -41212.737524] SLOW spr round 13 (radius: 5)
[03:35:26 -41212.620456] SLOW spr round 14 (radius: 5)
[03:37:07 -41212.619577] SLOW spr round 15 (radius: 10)
[03:38:43 -41212.619526] SLOW spr round 16 (radius: 15)
[03:41:01 -41212.531258] SLOW spr round 17 (radius: 20)
[03:44:10 -41209.856439] SLOW spr round 18 (radius: 5)
[03:46:02 -41205.103246] SLOW spr round 19 (radius: 5)
[03:47:46 -41205.102692] SLOW spr round 20 (radius: 10)
[03:49:25 -41204.831578] SLOW spr round 21 (radius: 5)
[03:50:40] [worker #1] ML tree search #4, logLikelihood: -41248.942507
[03:51:15 -41204.829917] SLOW spr round 22 (radius: 10)
[03:52:56 -41204.829794] SLOW spr round 23 (radius: 15)
[03:55:07 -41204.829784] SLOW spr round 24 (radius: 20)
[03:58:11 -41204.829780] SLOW spr round 25 (radius: 25)
[04:01:45 -41204.829779] Model parameter optimization (eps = 0.100000)

[04:01:57] [worker #0] ML tree search #5, logLikelihood: -41204.491332

[04:01:57 -135089.281749] Initial branch length optimization
[04:01:59 -112515.579912] Model parameter optimization (eps = 10.000000)
[04:02:43 -111738.177560] AUTODETECT spr round 1 (radius: 5)
[04:04:27 -88251.255934] AUTODETECT spr round 2 (radius: 10)
[04:06:20 -68456.386466] AUTODETECT spr round 3 (radius: 15)
[04:08:35 -55919.682237] AUTODETECT spr round 4 (radius: 20)
[04:12:09 -51891.113292] AUTODETECT spr round 5 (radius: 25)
[04:15:15 -49067.322368] SPR radius for FAST iterations: 25 (autodetect)
[04:15:15 -49067.322368] Model parameter optimization (eps = 3.000000)
[04:15:39 -48983.572870] FAST spr round 1 (radius: 25)
[04:18:11 -42136.075654] FAST spr round 2 (radius: 25)
[04:20:13 -41314.293790] FAST spr round 3 (radius: 25)
[04:21:48 -41205.743997] FAST spr round 4 (radius: 25)
[04:23:16 -41178.255321] FAST spr round 5 (radius: 25)
[04:24:37 -41172.143842] FAST spr round 6 (radius: 25)
[04:25:53 -41172.143137] Model parameter optimization (eps = 1.000000)
[04:26:00 -41171.589310] SLOW spr round 1 (radius: 5)
[04:27:39 -41158.376320] SLOW spr round 2 (radius: 5)
[04:29:15 -41158.367505] SLOW spr round 3 (radius: 10)
[04:30:49 -41154.659628] SLOW spr round 4 (radius: 5)
[04:32:40 -41153.757360] SLOW spr round 5 (radius: 5)
[04:34:22 -41152.747594] SLOW spr round 6 (radius: 5)
[04:35:58 -41152.746996] SLOW spr round 7 (radius: 10)
[04:37:32 -41151.529549] SLOW spr round 8 (radius: 5)
[04:39:22 -41151.176029] SLOW spr round 9 (radius: 5)
[04:41:01 -41151.175512] SLOW spr round 10 (radius: 10)
[04:42:36 -41147.042408] SLOW spr round 11 (radius: 5)
[04:44:28 -41143.455252] SLOW spr round 12 (radius: 5)
[04:46:10 -41139.989788] SLOW spr round 13 (radius: 5)
[04:47:46 -41139.950531] SLOW spr round 14 (radius: 10)
[04:49:19 -41137.641224] SLOW spr round 15 (radius: 5)
[04:51:08 -41137.640351] SLOW spr round 16 (radius: 10)
[04:52:47 -41137.640054] SLOW spr round 17 (radius: 15)
[04:54:56 -41130.815712] SLOW spr round 18 (radius: 5)
[04:56:48 -41130.397488] SLOW spr round 19 (radius: 5)
[04:58:09] [worker #1] ML tree search #6, logLikelihood: -41118.105606
[04:58:29 -41130.394420] SLOW spr round 20 (radius: 10)
[05:00:03 -41130.394268] SLOW spr round 21 (radius: 15)
[05:02:13 -41130.394099] SLOW spr round 22 (radius: 20)
[05:05:08 -41128.271186] SLOW spr round 23 (radius: 5)
[05:07:01 -41128.270058] SLOW spr round 24 (radius: 10)
[05:08:45 -41128.269875] SLOW spr round 25 (radius: 15)
[05:10:50 -41128.269730] SLOW spr round 26 (radius: 20)
[05:13:40 -41128.269587] SLOW spr round 27 (radius: 25)
[05:17:09 -41127.838116] SLOW spr round 28 (radius: 5)
[05:19:03 -41127.729689] SLOW spr round 29 (radius: 5)
[05:20:45 -41126.892196] SLOW spr round 30 (radius: 5)
[05:22:18 -41126.890373] SLOW spr round 31 (radius: 10)
[05:23:50 -41125.564420] SLOW spr round 32 (radius: 5)
[05:25:40 -41125.419647] SLOW spr round 33 (radius: 5)
[05:27:20 -41125.418933] SLOW spr round 34 (radius: 10)
[05:28:53 -41125.418887] SLOW spr round 35 (radius: 15)
[05:31:08 -41123.316766] SLOW spr round 36 (radius: 5)
[05:32:57 -41123.208987] SLOW spr round 37 (radius: 5)
[05:34:39 -41123.208640] SLOW spr round 38 (radius: 10)
[05:36:12 -41123.208561] SLOW spr round 39 (radius: 15)
[05:38:27 -41123.208523] SLOW spr round 40 (radius: 20)
[05:41:22 -41123.208492] SLOW spr round 41 (radius: 25)
[05:44:51 -41123.208463] Model parameter optimization (eps = 0.100000)

[05:45:00] [worker #0] ML tree search #7, logLikelihood: -41122.435946

[05:45:00 -134045.318109] Initial branch length optimization
[05:45:02 -111753.078072] Model parameter optimization (eps = 10.000000)
[05:45:31 -111166.553570] AUTODETECT spr round 1 (radius: 5)
[05:47:12 -86700.446391] AUTODETECT spr round 2 (radius: 10)
[05:49:02 -67267.165364] AUTODETECT spr round 3 (radius: 15)
[05:51:11 -58723.371461] AUTODETECT spr round 4 (radius: 20)
[05:54:10 -51798.007557] AUTODETECT spr round 5 (radius: 25)
[05:58:24 -49156.739993] SPR radius for FAST iterations: 25 (autodetect)
[05:58:24 -49156.739993] Model parameter optimization (eps = 3.000000)
[05:58:47 -49081.932690] FAST spr round 1 (radius: 25)
[06:01:44 -42275.554885] FAST spr round 2 (radius: 25)
[06:04:00 -41450.003940] FAST spr round 3 (radius: 25)
[06:05:40 -41180.694754] FAST spr round 4 (radius: 25)
[06:07:10 -41142.446734] FAST spr round 5 (radius: 25)
[06:08:33 -41139.789632] FAST spr round 6 (radius: 25)
[06:09:55 -41138.604683] FAST spr round 7 (radius: 25)
[06:11:13 -41138.604558] Model parameter optimization (eps = 1.000000)
[06:11:27 -41135.187136] SLOW spr round 1 (radius: 5)
[06:13:02 -41127.881710] SLOW spr round 2 (radius: 5)
[06:14:37 -41126.745882] SLOW spr round 3 (radius: 5)
[06:16:08 -41126.204377] SLOW spr round 4 (radius: 5)
[06:17:41 -41125.028603] SLOW spr round 5 (radius: 5)
[06:19:12 -41125.027299] SLOW spr round 6 (radius: 10)
[06:20:42 -41124.778852] SLOW spr round 7 (radius: 5)
[06:22:30 -41124.620144] SLOW spr round 8 (radius: 5)
[06:24:09 -41124.619816] SLOW spr round 9 (radius: 10)
[06:25:44 -41124.619816] SLOW spr round 10 (radius: 15)
[06:28:05 -41123.426764] SLOW spr round 11 (radius: 5)
[06:29:55 -41123.407599] SLOW spr round 12 (radius: 10)
[06:31:39 -41123.405715] SLOW spr round 13 (radius: 15)
[06:33:52 -41123.404574] SLOW spr round 14 (radius: 20)
[06:37:13 -41122.384764] SLOW spr round 15 (radius: 5)
[06:39:06 -41122.383228] SLOW spr round 16 (radius: 10)
[06:40:52 -41122.382120] SLOW spr round 17 (radius: 15)
[06:43:05 -41122.382003] SLOW spr round 18 (radius: 20)
[06:46:24 -41122.381927] SLOW spr round 19 (radius: 25)
[06:50:20 -41122.381876] Model parameter optimization (eps = 0.100000)

[06:50:25] [worker #0] ML tree search #9, logLikelihood: -41122.374395

[06:50:25 -135489.439623] Initial branch length optimization
[06:50:27 -112812.567860] Model parameter optimization (eps = 10.000000)
[06:51:13 -112131.094344] AUTODETECT spr round 1 (radius: 5)
[06:52:57 -88426.614819] AUTODETECT spr round 2 (radius: 10)
[06:54:44 -69621.765420] AUTODETECT spr round 3 (radius: 15)
[06:56:56 -56151.461446] AUTODETECT spr round 4 (radius: 20)
[06:59:40 -50160.418069] AUTODETECT spr round 5 (radius: 25)
[07:03:28 -47428.910011] SPR radius for FAST iterations: 25 (autodetect)
[07:03:28 -47428.910011] Model parameter optimization (eps = 3.000000)
[07:03:50 -47314.546750] FAST spr round 1 (radius: 25)
[07:04:11] [worker #1] ML tree search #8, logLikelihood: -41112.346836
[07:06:20 -41975.912787] FAST spr round 2 (radius: 25)
[07:08:46 -41396.395431] FAST spr round 3 (radius: 25)
[07:10:44 -41257.050128] FAST spr round 4 (radius: 25)
[07:12:38 -41234.459593] FAST spr round 5 (radius: 25)
[07:14:19 -41226.406972] FAST spr round 6 (radius: 25)
[07:15:59 -41220.302149] FAST spr round 7 (radius: 25)
[07:17:36 -41216.773018] FAST spr round 8 (radius: 25)
[07:19:08 -41214.972842] FAST spr round 9 (radius: 25)
[07:20:39 -41214.971128] Model parameter optimization (eps = 1.000000)
[07:20:52 -41210.363479] SLOW spr round 1 (radius: 5)
[07:23:06 -41184.963579] SLOW spr round 2 (radius: 5)
[07:25:15 -41182.861316] SLOW spr round 3 (radius: 5)
[07:27:21 -41181.448921] SLOW spr round 4 (radius: 5)
[07:29:22 -41181.448630] SLOW spr round 5 (radius: 10)
[07:31:23 -41179.847279] SLOW spr round 6 (radius: 5)
[07:33:58 -41178.787263] SLOW spr round 7 (radius: 5)
[07:36:12 -41178.787027] SLOW spr round 8 (radius: 10)
[07:38:16 -41178.787023] SLOW spr round 9 (radius: 15)
[07:41:57 -41172.675247] SLOW spr round 10 (radius: 5)
[07:44:43 -41169.135723] SLOW spr round 11 (radius: 5)
[07:47:02 -41169.134709] SLOW spr round 12 (radius: 10)
[07:49:07 -41169.134667] SLOW spr round 13 (radius: 15)
[07:52:44 -41168.332306] SLOW spr round 14 (radius: 5)
[07:55:27 -41167.450762] SLOW spr round 15 (radius: 5)
[07:57:44 -41167.420751] SLOW spr round 16 (radius: 10)
[07:59:50 -41166.305920] SLOW spr round 17 (radius: 5)
[08:02:18 -41166.305433] SLOW spr round 18 (radius: 10)
[08:04:34 -41159.691611] SLOW spr round 19 (radius: 5)
[08:07:09 -41158.264604] SLOW spr round 20 (radius: 5)
[08:09:22 -41158.263879] SLOW spr round 21 (radius: 10)
[08:11:20 -41158.263736] SLOW spr round 22 (radius: 15)
[08:14:47 -41157.932109] SLOW spr round 23 (radius: 5)
[08:17:26 -41157.663022] SLOW spr round 24 (radius: 5)
[08:19:43 -41157.662693] SLOW spr round 25 (radius: 10)
[08:21:47 -41157.662687] SLOW spr round 26 (radius: 15)
[08:25:22 -41157.662687] SLOW spr round 27 (radius: 20)
[08:31:09 -41157.662687] SLOW spr round 28 (radius: 25)
[08:34:43] [worker #1] ML tree search #10, logLikelihood: -41292.903634
[08:38:47 -41155.464057] SLOW spr round 29 (radius: 5)
[08:41:30 -41148.495327] SLOW spr round 30 (radius: 5)
[08:43:49 -41148.406160] SLOW spr round 31 (radius: 10)
[08:45:55 -41148.405857] SLOW spr round 32 (radius: 15)
[08:49:28 -41148.405853] SLOW spr round 33 (radius: 20)
[08:55:12 -41148.405853] SLOW spr round 34 (radius: 25)
[09:02:45 -41148.405853] Model parameter optimization (eps = 0.100000)

[09:02:50] [worker #0] ML tree search #11, logLikelihood: -41148.362257

[09:02:50 -135184.268137] Initial branch length optimization
[09:02:52 -112680.368970] Model parameter optimization (eps = 10.000000)
[09:03:40 -112014.171344] AUTODETECT spr round 1 (radius: 5)
[09:05:21 -87075.334386] AUTODETECT spr round 2 (radius: 10)
[09:07:12 -67353.141259] AUTODETECT spr round 3 (radius: 15)
[09:09:27 -56357.260227] AUTODETECT spr round 4 (radius: 20)
[09:12:59 -52460.898633] AUTODETECT spr round 5 (radius: 25)
[09:16:39 -48903.260493] SPR radius for FAST iterations: 25 (autodetect)
[09:16:39 -48903.260493] Model parameter optimization (eps = 3.000000)
[09:17:03 -48804.627664] FAST spr round 1 (radius: 25)
[09:19:46 -41979.156946] FAST spr round 2 (radius: 25)
[09:22:09 -41429.527070] FAST spr round 3 (radius: 25)
[09:24:07 -41356.964837] FAST spr round 4 (radius: 25)
[09:25:50 -41327.942050] FAST spr round 5 (radius: 25)
[09:27:15 -41327.152316] FAST spr round 6 (radius: 25)
[09:28:36 -41327.151531] Model parameter optimization (eps = 1.000000)
[09:28:44 -41325.349151] SLOW spr round 1 (radius: 5)
[09:30:34 -41314.072944] SLOW spr round 2 (radius: 5)
[09:32:19 -41312.247352] SLOW spr round 3 (radius: 5)
[09:33:59 -41312.247024] SLOW spr round 4 (radius: 10)
[09:35:39 -41312.062048] SLOW spr round 5 (radius: 5)
[09:37:38 -41312.061839] SLOW spr round 6 (radius: 10)
[09:39:31 -41312.061717] SLOW spr round 7 (radius: 15)
[09:42:08 -41311.783777] SLOW spr round 8 (radius: 5)
[09:44:18 -41310.715959] SLOW spr round 9 (radius: 5)
[09:46:10 -41310.111889] SLOW spr round 10 (radius: 5)
[09:47:55 -41310.111464] SLOW spr round 11 (radius: 10)
[09:49:38 -41306.393908] SLOW spr round 12 (radius: 5)
[09:51:43 -41300.721814] SLOW spr round 13 (radius: 5)
[09:53:33 -41299.738343] SLOW spr round 14 (radius: 5)
[09:55:14 -41299.738156] SLOW spr round 15 (radius: 10)
[09:56:54 -41298.091840] SLOW spr round 16 (radius: 5)
[09:58:54 -41297.749908] SLOW spr round 17 (radius: 5)
[10:00:43 -41297.749741] SLOW spr round 18 (radius: 10)
[10:02:22 -41297.749724] SLOW spr round 19 (radius: 15)
[10:04:59 -41296.291583] SLOW spr round 20 (radius: 5)
[10:07:01 -41296.288647] SLOW spr round 21 (radius: 10)
[10:08:54 -41296.287374] SLOW spr round 22 (radius: 15)
[10:11:20 -41296.286770] SLOW spr round 23 (radius: 20)
[10:14:58 -41294.847022] SLOW spr round 24 (radius: 5)
[10:17:03 -41294.723083] SLOW spr round 25 (radius: 5)
[10:18:54 -41294.714247] SLOW spr round 26 (radius: 10)
[10:20:38 -41294.694434] SLOW spr round 27 (radius: 15)
[10:23:10 -41294.694431] SLOW spr round 28 (radius: 20)
[10:26:42 -41294.694430] SLOW spr round 29 (radius: 25)
[10:31:04 -41291.367124] SLOW spr round 30 (radius: 5)
[10:33:10 -41286.758585] SLOW spr round 31 (radius: 5)
[10:35:01 -41286.757308] SLOW spr round 32 (radius: 10)
[10:36:45 -41284.516261] SLOW spr round 33 (radius: 5)
[10:38:42 -41284.403678] SLOW spr round 34 (radius: 5)
[10:40:30 -41282.207152] SLOW spr round 35 (radius: 5)
[10:42:13 -41280.723199] SLOW spr round 36 (radius: 5)
[10:43:53 -41277.363280] SLOW spr round 37 (radius: 5)
[10:45:30 -41277.313716] SLOW spr round 38 (radius: 10)
[10:47:04 -41275.839186] SLOW spr round 39 (radius: 5)
[10:48:57 -41275.225438] SLOW spr round 40 (radius: 5)
[10:50:40 -41275.223341] SLOW spr round 41 (radius: 10)
[10:52:15 -41275.223177] SLOW spr round 42 (radius: 15)
[10:54:37 -41274.018631] SLOW spr round 43 (radius: 5)
[10:56:30 -41274.018612] SLOW spr round 44 (radius: 10)
[10:58:16 -41274.018612] SLOW spr round 45 (radius: 15)
[11:00:29 -41274.018612] SLOW spr round 46 (radius: 20)
[11:03:43 -41273.541570] SLOW spr round 47 (radius: 5)
[11:05:40 -41273.541227] SLOW spr round 48 (radius: 10)
[11:07:29 -41273.541219] SLOW spr round 49 (radius: 15)
[11:09:07] [worker #1] ML tree search #12, logLikelihood: -41254.813570
[11:09:42 -41273.222265] SLOW spr round 50 (radius: 5)
[11:11:32 -41273.216470] SLOW spr round 51 (radius: 10)
[11:13:18 -41273.214823] SLOW spr round 52 (radius: 15)
[11:15:34 -41273.214322] SLOW spr round 53 (radius: 20)
[11:18:51 -41273.043768] SLOW spr round 54 (radius: 5)
[11:20:44 -41272.918851] SLOW spr round 55 (radius: 5)
[11:22:29 -41272.917154] SLOW spr round 56 (radius: 10)
[11:24:06 -41272.917054] SLOW spr round 57 (radius: 15)
[11:26:27 -41272.541118] SLOW spr round 58 (radius: 5)
[11:28:22 -41272.198391] SLOW spr round 59 (radius: 5)
[11:30:04 -41272.198097] SLOW spr round 60 (radius: 10)
[11:31:41 -41272.198085] SLOW spr round 61 (radius: 15)
[11:34:01 -41272.109345] SLOW spr round 62 (radius: 20)
[11:37:11 -41272.109291] SLOW spr round 63 (radius: 25)
[11:40:58 -41272.109288] Model parameter optimization (eps = 0.100000)

[11:41:07] [worker #0] ML tree search #13, logLikelihood: -41271.596912

[11:41:07 -134324.336960] Initial branch length optimization
[11:41:10 -112472.964914] Model parameter optimization (eps = 10.000000)
[11:41:41 -111645.452081] AUTODETECT spr round 1 (radius: 5)
[11:43:27 -86393.864421] AUTODETECT spr round 2 (radius: 10)
[11:45:18 -68000.847075] AUTODETECT spr round 3 (radius: 15)
[11:47:32 -57232.859823] AUTODETECT spr round 4 (radius: 20)
[11:51:05 -50381.739673] AUTODETECT spr round 5 (radius: 25)
[11:54:35 -47980.029044] SPR radius for FAST iterations: 25 (autodetect)
[11:54:35 -47980.029044] Model parameter optimization (eps = 3.000000)
[11:54:56 -47917.122005] FAST spr round 1 (radius: 25)
[11:57:20 -41705.764143] FAST spr round 2 (radius: 25)
[11:59:18 -41220.090392] FAST spr round 3 (radius: 25)
[12:00:50 -41158.471092] FAST spr round 4 (radius: 25)
[12:02:14 -41145.233924] FAST spr round 5 (radius: 25)
[12:03:33 -41145.174019] Model parameter optimization (eps = 1.000000)
[12:03:45 -41142.005637] SLOW spr round 1 (radius: 5)
[12:05:21 -41124.880438] SLOW spr round 2 (radius: 5)
[12:06:57 -41114.243436] SLOW spr round 3 (radius: 5)
[12:08:28 -41113.914291] SLOW spr round 4 (radius: 5)
[12:09:59 -41113.914218] SLOW spr round 5 (radius: 10)
[12:11:32 -41111.311506] SLOW spr round 6 (radius: 5)
[12:13:24 -41109.877447] SLOW spr round 7 (radius: 5)
[12:15:05 -41109.877200] SLOW spr round 8 (radius: 10)
[12:16:39 -41109.144826] SLOW spr round 9 (radius: 5)
[12:18:23 -41109.144757] SLOW spr round 10 (radius: 10)
[12:20:03 -41109.144757] SLOW spr round 11 (radius: 15)
[12:22:16 -41107.217495] SLOW spr round 12 (radius: 5)
[12:24:07 -41107.217445] SLOW spr round 13 (radius: 10)
[12:25:50 -41107.217442] SLOW spr round 14 (radius: 15)
[12:27:58 -41107.217441] SLOW spr round 15 (radius: 20)
[12:31:24 -41106.298381] SLOW spr round 16 (radius: 5)
[12:33:20 -41103.700803] SLOW spr round 17 (radius: 5)
[12:35:02 -41103.206881] SLOW spr round 18 (radius: 5)
[12:36:35 -41103.206652] SLOW spr round 19 (radius: 10)
[12:38:07 -41103.206633] SLOW spr round 20 (radius: 15)
[12:40:27 -41103.206630] SLOW spr round 21 (radius: 20)
[12:43:42 -41102.012857] SLOW spr round 22 (radius: 5)
[12:45:34 -41102.012398] SLOW spr round 23 (radius: 10)
[12:47:19 -41102.012393] SLOW spr round 24 (radius: 15)
[12:49:30 -41102.012393] SLOW spr round 25 (radius: 20)
[12:52:47 -41102.012393] SLOW spr round 26 (radius: 25)
[12:55:44] [worker #1] ML tree search #14, logLikelihood: -41219.077661
[12:56:40 -41100.988477] SLOW spr round 27 (radius: 5)
[12:58:34 -41097.189288] SLOW spr round 28 (radius: 5)
[13:00:13 -41097.188541] SLOW spr round 29 (radius: 10)
[13:01:49 -41097.188521] SLOW spr round 30 (radius: 15)
[13:04:02 -41097.188520] SLOW spr round 31 (radius: 20)
[13:07:14 -41097.188520] SLOW spr round 32 (radius: 25)
[13:11:00 -41097.188520] Model parameter optimization (eps = 0.100000)

[13:11:04] [worker #0] ML tree search #15, logLikelihood: -41097.178618

[13:11:04 -134355.336664] Initial branch length optimization
[13:11:06 -111933.375841] Model parameter optimization (eps = 10.000000)
[13:11:48 -111355.428345] AUTODETECT spr round 1 (radius: 5)
[13:13:29 -86710.575215] AUTODETECT spr round 2 (radius: 10)
[13:15:21 -67265.719479] AUTODETECT spr round 3 (radius: 15)
[13:17:32 -57736.377634] AUTODETECT spr round 4 (radius: 20)
[13:21:17 -51407.161471] AUTODETECT spr round 5 (radius: 25)
[13:24:11 -49561.789304] SPR radius for FAST iterations: 25 (autodetect)
[13:24:11 -49561.789304] Model parameter optimization (eps = 3.000000)
[13:24:33 -49497.604340] FAST spr round 1 (radius: 25)
[13:27:03 -42097.355489] FAST spr round 2 (radius: 25)
[13:29:04 -41326.013420] FAST spr round 3 (radius: 25)
[13:30:38 -41252.053851] FAST spr round 4 (radius: 25)
[13:32:04 -41233.527361] FAST spr round 5 (radius: 25)
[13:33:24 -41230.750478] FAST spr round 6 (radius: 25)
[13:34:43 -41230.750308] Model parameter optimization (eps = 1.000000)
[13:34:54 -41228.602061] SLOW spr round 1 (radius: 5)
[13:36:32 -41212.322805] SLOW spr round 2 (radius: 5)
[13:38:08 -41207.750218] SLOW spr round 3 (radius: 5)
[13:39:42 -41207.256215] SLOW spr round 4 (radius: 5)
[13:41:15 -41206.582996] SLOW spr round 5 (radius: 5)
[13:42:47 -41206.260347] SLOW spr round 6 (radius: 5)
[13:44:17 -41206.260036] SLOW spr round 7 (radius: 10)
[13:45:47 -41206.148608] SLOW spr round 8 (radius: 5)
[13:47:34 -41206.148548] SLOW spr round 9 (radius: 10)
[13:49:13 -41206.148531] SLOW spr round 10 (radius: 15)
[13:51:23 -41204.613577] SLOW spr round 11 (radius: 5)
[13:53:11 -41204.613554] SLOW spr round 12 (radius: 10)
[13:54:53 -41204.613552] SLOW spr round 13 (radius: 15)
[13:57:02 -41204.613552] SLOW spr round 14 (radius: 20)
[14:00:05 -41204.613552] SLOW spr round 15 (radius: 25)
[14:03:32 -41204.613552] Model parameter optimization (eps = 0.100000)

[14:03:36] [worker #0] ML tree search #17, logLikelihood: -41204.601645

[14:03:36 -135084.767790] Initial branch length optimization
[14:03:38 -112773.105335] Model parameter optimization (eps = 10.000000)
[14:04:09 -112144.877778] AUTODETECT spr round 1 (radius: 5)
[14:05:53 -85855.823152] AUTODETECT spr round 2 (radius: 10)
[14:07:44 -67299.492739] AUTODETECT spr round 3 (radius: 15)
[14:10:09 -57990.857377] AUTODETECT spr round 4 (radius: 20)
[14:13:01 -50783.403728] AUTODETECT spr round 5 (radius: 25)
[14:16:03 -49018.482036] SPR radius for FAST iterations: 25 (autodetect)
[14:16:03 -49018.482036] Model parameter optimization (eps = 3.000000)
[14:16:21 -48942.698384] FAST spr round 1 (radius: 25)
[14:19:12 -42612.522649] FAST spr round 2 (radius: 25)
[14:21:35 -42080.927285] FAST spr round 3 (radius: 25)
[14:23:20 -41598.532467] FAST spr round 4 (radius: 25)
[14:24:53 -41321.433098] FAST spr round 5 (radius: 25)
[14:26:20 -41294.828565] FAST spr round 6 (radius: 25)
[14:27:41 -41292.564884] FAST spr round 7 (radius: 25)
[14:29:00 -41292.564300] Model parameter optimization (eps = 1.000000)
[14:29:11 -41287.462047] SLOW spr round 1 (radius: 5)
[14:30:48 -41273.637752] SLOW spr round 2 (radius: 5)
[14:32:23 -41268.230438] SLOW spr round 3 (radius: 5)
[14:33:56 -41267.790262] SLOW spr round 4 (radius: 5)
[14:35:27 -41267.789656] SLOW spr round 5 (radius: 10)
[14:37:00 -41267.221024] SLOW spr round 6 (radius: 5)
[14:37:22] [worker #1] ML tree search #16, logLikelihood: -41096.048921
[14:38:50 -41267.220931] SLOW spr round 7 (radius: 10)
[14:40:31 -41267.220923] SLOW spr round 8 (radius: 15)
[14:42:46 -41264.188876] SLOW spr round 9 (radius: 5)
[14:44:38 -41263.749999] SLOW spr round 10 (radius: 5)
[14:46:18 -41263.749743] SLOW spr round 11 (radius: 10)
[14:47:54 -41263.749706] SLOW spr round 12 (radius: 15)
[14:50:13 -41263.749697] SLOW spr round 13 (radius: 20)
[14:53:21 -41261.629549] SLOW spr round 14 (radius: 5)
[14:55:15 -41259.955533] SLOW spr round 15 (radius: 5)
[14:56:58 -41259.683695] SLOW spr round 16 (radius: 5)
[14:58:35 -41259.683152] SLOW spr round 17 (radius: 10)
[15:00:08 -41259.683131] SLOW spr round 18 (radius: 15)
[15:02:27 -41259.307737] SLOW spr round 19 (radius: 5)
[15:04:17 -41259.307327] SLOW spr round 20 (radius: 10)
[15:06:01 -41259.307283] SLOW spr round 21 (radius: 15)
[15:08:12 -41259.307275] SLOW spr round 22 (radius: 20)
[15:11:13 -41259.010735] SLOW spr round 23 (radius: 5)
[15:13:06 -41254.942714] SLOW spr round 24 (radius: 5)
[15:14:48 -41254.942714] SLOW spr round 25 (radius: 10)
[15:16:24 -41254.942714] SLOW spr round 26 (radius: 15)
[15:18:40 -41254.942714] SLOW spr round 27 (radius: 20)
[15:21:39 -41254.942714] SLOW spr round 28 (radius: 25)
[15:25:13 -41254.942714] Model parameter optimization (eps = 0.100000)

[15:25:18] [worker #0] ML tree search #19, logLikelihood: -41254.826865

[15:49:26] [worker #1] ML tree search #18, logLikelihood: -41248.653579
[17:16:25] [worker #1] ML tree search #20, logLikelihood: -41117.122749

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.282407,0.123094) (0.094100,0.576302) (0.458783,1.234923) (0.164711,2.091219) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -41096.048921

AIC score: 86018.097842 / AICc score: 7408982.097842 / BIC score: 90690.889696
Free parameters (model + branch lengths): 1913

WARNING: Number of free parameters (K=1913) is larger than alignment size (n=85).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N2E2/3_mltree/Q8N2E2.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N2E2/3_mltree/Q8N2E2.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N2E2/3_mltree/Q8N2E2.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N2E2/3_mltree/Q8N2E2.raxml.log

Analysis started: 30-Jun-2021 18:27:45 / finished: 01-Jul-2021 11:44:11

Elapsed time: 62185.966 seconds

Consumed energy: 5029.578 Wh (= 25 km in an electric car, or 126 km with an e-scooter!)