RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 07-Jul-2021 11:24:43 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N1G1/2_msa/Q8N1G1_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N1G1/3_mltree/Q8N1G1 --seed 2 --threads 6 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N1G1/2_msa/Q8N1G1_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 283 sites

WARNING: Sequences tr_G1QN63_G1QN63_NOMLE_61853 and tr_G3SIR9_G3SIR9_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1QN63_G1QN63_NOMLE_61853 and sp_Q8N1G1_REXO1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_B6QK06_B6QK06_TALMQ_441960 and tr_A0A093VJ13_A0A093VJ13_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_B2WJ80_B2WJ80_PYRTR_426418 and tr_A0A2W1HS92_A0A2W1HS92_9PLEO_45151 are exactly identical!
WARNING: Sequences tr_G2WZ52_G2WZ52_VERDV_498257 and tr_C9SML3_C9SML3_VERA1_526221 are exactly identical!
WARNING: Sequences tr_A0A179U7K6_A0A179U7K6_BLAGS_559298 and tr_C5GVY2_C5GVY2_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_A0A2I3SM52_A0A2I3SM52_PANTR_9598 and tr_A0A2I3SXN9_A0A2I3SXN9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3SM52_A0A2I3SM52_PANTR_9598 and sp_P48778_GOR_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3T5N5_A0A2I3T5N5_PANTR_9598 and tr_A0A2I3TLX2_A0A2I3TLX2_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3T5N5_A0A2I3T5N5_PANTR_9598 and tr_A0A2I3TNR4_A0A2I3TNR4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_C6H5S6_C6H5S6_AJECH_544712 and tr_F0UVP7_F0UVP7_AJEC8_544711 are exactly identical!
WARNING: Sequences tr_A0A0E0J7K5_A0A0E0J7K5_ORYNI_4536 and tr_A0A0E0REQ2_A0A0E0REQ2_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0K0JDU9_A0A0K0JDU9_BRUMA_6279 and tr_A0A0R3Q3M6_A0A0R3Q3M6_9BILA_42155 are exactly identical!
WARNING: Sequences tr_A2R5A3_A2R5A3_ASPNC_425011 and tr_A0A319A2U0_A0A319A2U0_9EURO_1450533 are exactly identical!
WARNING: Sequences tr_G7XU78_G7XU78_ASPKW_1033177 and tr_A0A146FWH1_A0A146FWH1_9EURO_1069201 are exactly identical!
WARNING: Sequences tr_G7XU78_G7XU78_ASPKW_1033177 and tr_A0A317VWT7_A0A317VWT7_9EURO_1448314 are exactly identical!
WARNING: Sequences tr_A0A0E0FAD1_A0A0E0FAD1_9ORYZ_40149 and tr_A0A0D3HS53_A0A0D3HS53_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_G2Y485_G2Y485_BOTF4_999810 and tr_M7UYU0_M7UYU0_BOTF1_1290391 are exactly identical!
WARNING: Sequences tr_F2SG68_F2SG68_TRIRC_559305 and tr_A0A178F037_A0A178F037_TRIRU_5551 are exactly identical!
WARNING: Sequences tr_L0P880_L0P880_PNEJ8_1209962 and tr_A0A0W4ZRC4_A0A0W4ZRC4_PNEJ7_1408657 are exactly identical!
WARNING: Sequences tr_U5HDD1_U5HDD1_USTV1_683840 and tr_A0A2X0MDX5_A0A2X0MDX5_9BASI_796604 are exactly identical!
WARNING: Sequences tr_V2XU60_V2XU60_MONRO_1381753 and tr_A0A0W0FJW5_A0A0W0FJW5_9AGAR_221103 are exactly identical!
WARNING: Sequences tr_W2Q242_W2Q242_PHYPN_761204 and tr_W2KY66_W2KY66_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A096MNI8_A0A096MNI8_PAPAN_9555 and tr_A0A096MNZ7_A0A096MNZ7_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A096MNI8_A0A096MNI8_PAPAN_9555 and tr_A0A2I3MVW5_A0A2I3MVW5_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A0A0MWD3_A0A0A0MWD3_PAPAN_9555 and tr_A0A2K5LJS5_A0A2K5LJS5_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A094EK02_A0A094EK02_9PEZI_1420912 and tr_A0A1B8GDT1_A0A1B8GDT1_9PEZI_342668 are exactly identical!
WARNING: Sequences tr_X0C6L0_X0C6L0_FUSOX_1089458 and tr_A0A2H3TDV4_A0A2H3TDV4_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_X0C6L0_X0C6L0_FUSOX_1089458 and tr_A0A2H3HST3_A0A2H3HST3_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_A0A0F0IJJ7_A0A0F0IJJ7_ASPPU_1403190 and tr_A0A1S9DPZ1_A0A1S9DPZ1_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_A0A091JC05_A0A091JC05_EGRGA_188379 and tr_A0A087RCX0_A0A087RCX0_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091JC05_A0A091JC05_EGRGA_188379 and tr_A0A093J531_A0A093J531_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A091JC05_A0A091JC05_EGRGA_188379 and tr_A0A091WF27_A0A091WF27_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A091JC05_A0A091JC05_EGRGA_188379 and tr_A0A0A0A012_A0A0A0A012_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A1S4AE31_A0A1S4AE31_TOBAC_4097 and tr_A0A1U7VDA7_A0A1U7VDA7_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3K3L0_A0A1S3K3L0_LINUN_7574 and tr_A0A1S3K4C9_A0A1S3K4C9_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1U8GES2_A0A1U8GES2_CAPAN_4072 and tr_A0A2G3CLX4_A0A2G3CLX4_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2Y9LTI1_A0A2Y9LTI1_DELLE_9749 and tr_A0A2Y9TL65_A0A2Y9TL65_PHYCD_9755 are exactly identical!
WARNING: Duplicate sequences found: 38

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N1G1/3_mltree/Q8N1G1.raxml.reduced.phy

Alignment comprises 1 partitions and 283 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 283 / 283
Gaps: 9.20 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N1G1/3_mltree/Q8N1G1.raxml.rba

Parallelization scheme autoconfig: 6 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 283 / 22640
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -512337.662684] Initial branch length optimization
[00:00:09 -432315.642791] Model parameter optimization (eps = 10.000000)
[00:01:14 -431454.644680] AUTODETECT spr round 1 (radius: 5)
[00:05:35 -335421.170447] AUTODETECT spr round 2 (radius: 10)
[00:10:25 -268491.694983] AUTODETECT spr round 3 (radius: 15)
[00:15:54 -216508.614300] AUTODETECT spr round 4 (radius: 20)
[00:22:11 -202537.901416] AUTODETECT spr round 5 (radius: 25)
[00:28:59 -199397.825776] SPR radius for FAST iterations: 25 (autodetect)
[00:28:59 -199397.825776] Model parameter optimization (eps = 3.000000)
[00:29:33 -199283.563011] FAST spr round 1 (radius: 25)
[00:35:45 -176214.325260] FAST spr round 2 (radius: 25)
[00:40:07 -174470.597627] FAST spr round 3 (radius: 25)
[00:43:40 -174382.211397] FAST spr round 4 (radius: 25)
[00:46:48 -174364.180057] FAST spr round 5 (radius: 25)
[00:49:44 -174358.658414] FAST spr round 6 (radius: 25)
[00:52:31 -174358.658236] Model parameter optimization (eps = 1.000000)
[00:52:54 -174356.913082] SLOW spr round 1 (radius: 5)
[00:56:59 -174306.748041] SLOW spr round 2 (radius: 5)
[01:00:47 -174303.214444] SLOW spr round 3 (radius: 5)
[01:04:27 -174303.213318] SLOW spr round 4 (radius: 10)
[01:08:15 -174303.213283] SLOW spr round 5 (radius: 15)
[01:15:28 -174303.213276] SLOW spr round 6 (radius: 20)
[01:25:15 -174303.213274] SLOW spr round 7 (radius: 25)
[01:38:06 -174303.213273] Model parameter optimization (eps = 0.100000)

[01:38:14] [worker #0] ML tree search #1, logLikelihood: -174303.196712

[01:38:15 -510322.894060] Initial branch length optimization
[01:38:21 -432150.447944] Model parameter optimization (eps = 10.000000)
[01:39:20 -431288.975629] AUTODETECT spr round 1 (radius: 5)
[01:43:39 -331714.906179] AUTODETECT spr round 2 (radius: 10)
[01:46:42] [worker #3] ML tree search #4, logLikelihood: -174318.844345
[01:48:01] [worker #5] ML tree search #6, logLikelihood: -174291.461626
[01:48:37 -258255.392440] AUTODETECT spr round 3 (radius: 15)
[01:54:03 -220811.546199] AUTODETECT spr round 4 (radius: 20)
[01:59:56 -204806.387642] AUTODETECT spr round 5 (radius: 25)
[02:06:35 -199069.747505] SPR radius for FAST iterations: 25 (autodetect)
[02:06:35 -199069.747505] Model parameter optimization (eps = 3.000000)
[02:07:06 -198984.790012] FAST spr round 1 (radius: 25)
[02:13:36 -175626.955718] FAST spr round 2 (radius: 25)
[02:18:10 -174469.215873] FAST spr round 3 (radius: 25)
[02:18:38] [worker #2] ML tree search #3, logLikelihood: -174306.252412
[02:21:49 -174397.054194] FAST spr round 4 (radius: 25)
[02:25:11 -174379.509771] FAST spr round 5 (radius: 25)
[02:28:02 -174379.509733] Model parameter optimization (eps = 1.000000)
[02:28:25 -174373.853143] SLOW spr round 1 (radius: 5)
[02:32:49 -174319.369848] SLOW spr round 2 (radius: 5)
[02:36:49 -174311.849475] SLOW spr round 3 (radius: 5)
[02:40:40 -174309.948660] SLOW spr round 4 (radius: 5)
[02:44:20 -174309.821609] SLOW spr round 5 (radius: 5)
[02:47:58 -174309.821517] SLOW spr round 6 (radius: 10)
[02:51:44 -174309.821513] SLOW spr round 7 (radius: 15)
[02:58:35 -174309.821513] SLOW spr round 8 (radius: 20)
[03:01:04] [worker #1] ML tree search #2, logLikelihood: -174315.960076
[03:08:07 -174309.821513] SLOW spr round 9 (radius: 25)
[03:10:31] [worker #4] ML tree search #5, logLikelihood: -174306.610097
[03:20:42 -174309.821512] Model parameter optimization (eps = 0.100000)

[03:20:51] [worker #0] ML tree search #7, logLikelihood: -174309.775966

[03:20:51 -510195.346300] Initial branch length optimization
[03:20:58 -431381.124344] Model parameter optimization (eps = 10.000000)
[03:21:57 -430525.671743] AUTODETECT spr round 1 (radius: 5)
[03:26:19 -332005.194084] AUTODETECT spr round 2 (radius: 10)
[03:31:15 -269278.800841] AUTODETECT spr round 3 (radius: 15)
[03:36:46 -226485.218582] AUTODETECT spr round 4 (radius: 20)
[03:43:05 -200372.131136] AUTODETECT spr round 5 (radius: 25)
[03:50:37 -196875.563738] SPR radius for FAST iterations: 25 (autodetect)
[03:50:37 -196875.563738] Model parameter optimization (eps = 3.000000)
[03:51:14 -196797.086388] FAST spr round 1 (radius: 25)
[03:57:34 -175317.231303] FAST spr round 2 (radius: 25)
[04:01:58 -174450.402579] FAST spr round 3 (radius: 25)
[04:05:06] [worker #3] ML tree search #10, logLikelihood: -174302.170342
[04:05:37 -174384.453829] FAST spr round 4 (radius: 25)
[04:08:38 -174381.290151] FAST spr round 5 (radius: 25)
[04:11:30 -174380.482690] FAST spr round 6 (radius: 25)
[04:14:16 -174379.352395] FAST spr round 7 (radius: 25)
[04:17:02 -174378.013277] FAST spr round 8 (radius: 25)
[04:19:44 -174378.013236] Model parameter optimization (eps = 1.000000)
[04:19:59 -174375.706761] SLOW spr round 1 (radius: 5)
[04:20:21] [worker #2] ML tree search #9, logLikelihood: -174299.387369
[04:23:10] [worker #5] ML tree search #12, logLikelihood: -174306.992065
[04:24:10 -174326.553045] SLOW spr round 2 (radius: 5)
[04:28:13 -174320.795271] SLOW spr round 3 (radius: 5)
[04:32:11 -174313.748874] SLOW spr round 4 (radius: 5)
[04:36:00 -174313.037958] SLOW spr round 5 (radius: 5)
[04:39:40 -174312.310272] SLOW spr round 6 (radius: 5)
[04:43:21 -174312.310271] SLOW spr round 7 (radius: 10)
[04:47:13 -174311.289470] SLOW spr round 8 (radius: 5)
[04:52:04 -174310.371107] SLOW spr round 9 (radius: 5)
[04:56:16 -174310.371107] SLOW spr round 10 (radius: 10)
[05:00:18 -174310.371107] SLOW spr round 11 (radius: 15)
[05:07:08 -174310.371107] SLOW spr round 12 (radius: 20)
[05:17:10 -174310.371107] SLOW spr round 13 (radius: 25)
[05:19:46] [worker #4] ML tree search #11, logLikelihood: -174316.630514
[05:23:12] [worker #1] ML tree search #8, logLikelihood: -174293.869147
[05:30:03 -174310.371107] Model parameter optimization (eps = 0.100000)

[05:30:24] [worker #0] ML tree search #13, logLikelihood: -174309.769970

[05:30:24 -507408.581271] Initial branch length optimization
[05:30:32 -428741.106587] Model parameter optimization (eps = 10.000000)
[05:31:30 -427832.142136] AUTODETECT spr round 1 (radius: 5)
[05:35:55 -335992.579133] AUTODETECT spr round 2 (radius: 10)
[05:40:51 -264210.953837] AUTODETECT spr round 3 (radius: 15)
[05:46:15 -225166.658437] AUTODETECT spr round 4 (radius: 20)
[05:52:29 -206689.998137] AUTODETECT spr round 5 (radius: 25)
[05:59:37 -201038.224071] SPR radius for FAST iterations: 25 (autodetect)
[05:59:37 -201038.224071] Model parameter optimization (eps = 3.000000)
[05:59:52 -201032.233654] FAST spr round 1 (radius: 25)
[06:04:33] [worker #5] ML tree search #18, logLikelihood: -174298.723612
[06:06:41 -175702.804970] FAST spr round 2 (radius: 25)
[06:11:17 -174796.741279] FAST spr round 3 (radius: 25)
[06:15:03 -174455.139050] FAST spr round 4 (radius: 25)
[06:18:12 -174441.848136] FAST spr round 5 (radius: 25)
[06:21:07 -174438.921682] FAST spr round 6 (radius: 25)
[06:23:55 -174438.921139] Model parameter optimization (eps = 1.000000)
[06:23:55] [worker #3] ML tree search #16, logLikelihood: -174292.702353
[06:24:26 -174363.317746] SLOW spr round 1 (radius: 5)
[06:27:44] [worker #2] ML tree search #15, logLikelihood: -174381.673327
[06:28:37 -174310.543048] SLOW spr round 2 (radius: 5)
[06:32:32 -174305.114030] SLOW spr round 3 (radius: 5)
[06:36:15 -174304.982302] SLOW spr round 4 (radius: 5)
[06:39:53 -174304.981985] SLOW spr round 5 (radius: 10)
[06:43:38 -174304.981969] SLOW spr round 6 (radius: 15)
[06:50:55 -174304.981968] SLOW spr round 7 (radius: 20)
[07:00:29] [worker #4] ML tree search #17, logLikelihood: -174301.890851
[07:01:00 -174304.981968] SLOW spr round 8 (radius: 25)
[07:13:51 -174304.981968] Model parameter optimization (eps = 0.100000)

[07:14:05] [worker #0] ML tree search #19, logLikelihood: -174304.798773

[08:26:15] [worker #1] ML tree search #14, logLikelihood: -174290.269070
[10:56:03] [worker #1] ML tree search #20, logLikelihood: -174313.814609

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.140961,0.269809) (0.187547,0.361965) (0.364943,0.936871) (0.306549,1.801271) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -174290.269070

AIC score: 352590.538140 / AICc score: 8396650.538140 / BIC score: 359899.659170
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=283).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N1G1/3_mltree/Q8N1G1.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N1G1/3_mltree/Q8N1G1.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N1G1/3_mltree/Q8N1G1.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q8N1G1/3_mltree/Q8N1G1.raxml.log

Analysis started: 07-Jul-2021 11:24:43 / finished: 07-Jul-2021 22:20:46

Elapsed time: 39363.503 seconds