RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 01-Jul-2021 00:55:43 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N135/2_msa/Q8N135_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N135/3_mltree/Q8N135 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N135/2_msa/Q8N135_trimmed_msa.fasta [00:00:00] Loaded alignment with 992 taxa and 119 sites WARNING: Sequences tr_A0A1D5NXH9_A0A1D5NXH9_CHICK_9031 and tr_A0A226N6E5_A0A226N6E5_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5NXH9_A0A1D5NXH9_CHICK_9031 and tr_A0A226PS52_A0A226PS52_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PFF3_A0A1D5PFF3_CHICK_9031 and tr_G1N9F8_G1N9F8_MELGA_9103 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_M3XRL6_M3XRL6_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_G3I4T1_G3I4T1_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_G3RTX2_G3RTX2_GORGO_9595 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_G1SED4_G1SED4_RABIT_9986 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_F1PZW2_F1PZW2_CANLF_9615 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_H2QGY2_H2QGY2_PANTR_9598 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_F7DPM3_F7DPM3_HORSE_9796 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and sp_P0CC10_LRC4B_RAT_10116 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_H0XRH7_H0XRH7_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_H0WDC0_H0WDC0_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and sp_Q9NT99_LRC4B_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_F7H0A3_F7H0A3_MACMU_9544 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_G3SWE9_G3SWE9_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_F7I7S5_F7I7S5_CALJA_9483 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A286ZY04_A0A286ZY04_PIG_9823 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_G1M2S4_G1M2S4_AILME_9646 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_E1BPK8_E1BPK8_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_M3XBN4_M3XBN4_FELCA_9685 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A0A0MVU1_A0A0A0MVU1_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A091D6S6_A0A091D6S6_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A1S3G4U1_A0A1S3G4U1_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A1U7SV44_A0A1U7SV44_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A1U7RAS4_A0A1U7RAS4_MESAU_10036 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A2K5KY06_A0A2K5KY06_CERAT_9531 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A2K6BPY9_A0A2K6BPY9_MACNE_9545 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A2K5XDC3_A0A2K5XDC3_MANLE_9568 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A2R8ZF23_A0A2R8ZF23_PANPA_9597 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A2U4APT3_A0A2U4APT3_TURTR_9739 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A2U3WLZ6_A0A2U3WLZ6_ODORO_9708 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A2U3YWN5_A0A2U3YWN5_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A2Y9DVF7_A0A2Y9DVF7_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A2Y9L7D7_A0A2Y9L7D7_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A2Y9P997_A0A2Y9P997_DELLE_9749 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A2Y9EKM0_A0A2Y9EKM0_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A384BKB0_A0A384BKB0_URSMA_29073 are exactly identical! WARNING: Sequences sp_P0C192_LRC4B_MOUSE_10090 and tr_A0A383ZYM0_A0A383ZYM0_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q8BGT1_FLRT3_MOUSE_10090 and tr_G3HX58_G3HX58_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q8BGT1_FLRT3_MOUSE_10090 and sp_B1H234_FLRT3_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8BGT1_FLRT3_MOUSE_10090 and tr_A0A1U8BK12_A0A1U8BK12_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_D3ZXT1_D3ZXT1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8C031_LRC4C_MOUSE_10090 and tr_A0A1U8CES9_A0A1U8CES9_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q8K406_LGI3_MOUSE_10090 and tr_G1SGM7_G1SGM7_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XSK0_M3XSK0_MUSPF_9669 and tr_F7HSZ8_F7HSZ8_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XSK0_M3XSK0_MUSPF_9669 and tr_A0A096NAN0_A0A096NAN0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XSK0_M3XSK0_MUSPF_9669 and tr_A0A0D9QWZ5_A0A0D9QWZ5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3XSK0_M3XSK0_MUSPF_9669 and tr_A0A2K5P6S7_A0A2K5P6S7_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3XSK0_M3XSK0_MUSPF_9669 and tr_A0A2K6E6G6_A0A2K6E6G6_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3XXT1_M3XXT1_MUSPF_9669 and tr_G1Q2T0_G1Q2T0_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3XXT1_M3XXT1_MUSPF_9669 and tr_F1PG90_F1PG90_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XXT1_M3XXT1_MUSPF_9669 and tr_F7CJB5_F7CJB5_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XXT1_M3XXT1_MUSPF_9669 and tr_A0A287BHH5_A0A287BHH5_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XXT1_M3XXT1_MUSPF_9669 and tr_D2H049_D2H049_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XXT1_M3XXT1_MUSPF_9669 and tr_A0A2U3W2Q2_A0A2U3W2Q2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XXT1_M3XXT1_MUSPF_9669 and tr_A0A2U3YLZ5_A0A2U3YLZ5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XXT1_M3XXT1_MUSPF_9669 and tr_A0A2Y9MHR7_A0A2Y9MHR7_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XXT1_M3XXT1_MUSPF_9669 and tr_A0A2Y9FN54_A0A2Y9FN54_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XXT1_M3XXT1_MUSPF_9669 and tr_A0A383YYQ4_A0A383YYQ4_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Y1L5_M3Y1L5_MUSPF_9669 and tr_M3X9C9_M3X9C9_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y1L5_M3Y1L5_MUSPF_9669 and tr_A0A2U3W0E5_A0A2U3W0E5_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y1L5_M3Y1L5_MUSPF_9669 and tr_A0A2Y9IWD6_A0A2Y9IWD6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y1L5_M3Y1L5_MUSPF_9669 and tr_A0A2Y9NXS7_A0A2Y9NXS7_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Y1L5_M3Y1L5_MUSPF_9669 and tr_A0A2Y9SAT7_A0A2Y9SAT7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Y1L5_M3Y1L5_MUSPF_9669 and tr_A0A383Z2W6_A0A383Z2W6_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_G1Q3R1_G1Q3R1_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_E2RH90_E2RH90_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_F7BVS9_F7BVS9_MONDO_13616 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_F7DUX8_F7DUX8_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_F1SML5_F1SML5_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_D2GWR2_D2GWR2_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_L5KR26_L5KR26_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_A0A337SDZ2_A0A337SDZ2_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_A0A2U3UZJ5_A0A2U3UZJ5_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_A0A2U3VS62_A0A2U3VS62_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_A0A2U3YUV5_A0A2U3YUV5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_A0A2Y9K2T6_A0A2Y9K2T6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_A0A2Y9NXF8_A0A2Y9NXF8_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_A0A2Y9FEL4_A0A2Y9FEL4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_A0A384DAI9_A0A384DAI9_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y5A8_M3Y5A8_MUSPF_9669 and tr_A0A383ZQ82_A0A383ZQ82_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YF31_M3YF31_MUSPF_9669 and tr_A0A2Y9J0W5_A0A2Y9J0W5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YZ69_M3YZ69_MUSPF_9669 and tr_F1PAU6_F1PAU6_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YZ69_M3YZ69_MUSPF_9669 and tr_A0A2U3ZIA4_A0A2U3ZIA4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z0B9_M3Z0B9_MUSPF_9669 and tr_A0A2Y9JD54_A0A2Y9JD54_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_G1QDN2_G1QDN2_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_G3QV61_G3QV61_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2J8WFS6_A0A2J8WFS6_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_G1TE00_G1TE00_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_E2REC5_E2REC5_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2J8LHU0_A0A2J8LHU0_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_F6YUN2_F6YUN2_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_W5PLP9_W5PLP9_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_I3MZI2_I3MZI2_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_H0WIA0_H0WIA0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and sp_Q9HCJ2_LRC4C_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_F6T8E0_F6T8E0_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_G3SXT6_G3SXT6_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_U3C210_U3C210_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_F1SHH6_F1SHH6_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_D2HRR2_D2HRR2_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_G7PQD6_G7PQD6_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_F1MXH5_F1MXH5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_L5KYH0_L5KYH0_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_M3WQ26_M3WQ26_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A096MRD0_A0A096MRD0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A0D9SCY3_A0A0D9SCY3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A1S3FFJ4_A0A1S3FFJ4_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2K5L2M8_A0A2K5L2M8_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2K6AXG9_A0A2K6AXG9_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2K5XNX9_A0A2K5XNX9_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2R8Z8N1_A0A2R8Z8N1_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2U4CF65_A0A2U4CF65_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2U3W956_A0A2U3W956_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2U3XA41_A0A2U3XA41_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2Y9JR28_A0A2Y9JR28_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A2Y9P7K7_A0A2Y9P7K7_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A384CXS0_A0A384CXS0_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z412_M3Z412_MUSPF_9669 and tr_A0A384A1A6_A0A384A1A6_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A2I3HXW8_A0A2I3HXW8_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_G3SB88_G3SB88_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_H2P127_H2P127_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and sp_Q5R6T0_FLRT3_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_E2RKY7_E2RKY7_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A2J8MSW9_A0A2J8MSW9_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_F6VGZ3_F6VGZ3_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_W5P2P4_W5P2P4_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A286XMF9_A0A286XMF9_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and sp_Q9NZU0_FLRT3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_F6SUY7_F6SUY7_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_G5C575_G5C575_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_G3TQ61_G3TQ61_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_F1SBJ0_F1SBJ0_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_D2H9J6_D2H9J6_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_G7PH00_G7PH00_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_F1N0R7_F1N0R7_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A096MYT7_A0A096MYT7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A0D9SBF4_A0A0D9SBF4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A1S3ESS3_A0A1S3ESS3_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A2K5L1A1_A0A2K5L1A1_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A2K6ASW6_A0A2K6ASW6_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A2K5XWH9_A0A2K5XWH9_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A2R8ZD86_A0A2R8ZD86_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A2U3WU36_A0A2U3WU36_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A2Y9R659_A0A2Y9R659_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A2Y9IMJ0_A0A2Y9IMJ0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z6D8_M3Z6D8_MUSPF_9669 and tr_A0A384D471_A0A384D471_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3H4E6_A0A2I3H4E6_NOMLE_61853 and tr_G3QEW7_G3QEW7_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H4E6_A0A2I3H4E6_NOMLE_61853 and tr_H2PPR3_H2PPR3_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H4E6_A0A2I3H4E6_NOMLE_61853 and sp_Q1EGL0_LGI3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H4E6_A0A2I3H4E6_NOMLE_61853 and sp_Q8N145_LGI3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H4E6_A0A2I3H4E6_NOMLE_61853 and tr_A0A2R9BDE6_A0A2R9BDE6_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_G3SDX5_G3SDX5_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_H2PNE9_H2PNE9_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_H2QVB4_H2QVB4_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_I3MVY6_I3MVY6_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_A0A286X905_A0A286X905_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and sp_Q9HBW1_LRRC4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_F6Q3P7_F6Q3P7_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_G3TMK9_G3TMK9_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_A0A2R8M3Y9_A0A2R8M3Y9_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_A0A096NB36_A0A096NB36_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_A0A0D9SCQ8_A0A0D9SCQ8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_A0A1S3FHS1_A0A1S3FHS1_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_A0A1U7TDX1_A0A1U7TDX1_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_A0A1U7QPD8_A0A1U7QPD8_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_A0A2K5N576_A0A2K5N576_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_A0A2K6CU43_A0A2K6CU43_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_A0A2K5XDR7_A0A2K5XDR7_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_A0A2R9A6Z7_A0A2R9A6Z7_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HBP5_A0A2I3HBP5_NOMLE_61853 and tr_A0A2Y9DY10_A0A2Y9DY10_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_G3QIJ9_G3QIJ9_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_H2NB22_H2NB22_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and sp_Q1EGL2_LGI1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_F6QPB4_F6QPB4_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A287CYJ6_A0A287CYJ6_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and sp_O95970_LGI1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_F7GS70_F7GS70_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A2R8M8I9_A0A2R8M8I9_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_G7PDL1_G7PDL1_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A2I3MHY1_A0A2I3MHY1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A0D9R1M8_A0A0D9R1M8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A2K6CQR1_A0A2K6CQR1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A2K6A3M4_A0A2K6A3M4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A2R9B5Z2_A0A2R9B5Z2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A2U3V1F8_A0A2U3V1F8_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A2Y9N0W3_A0A2Y9N0W3_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A2Y9FEF4_A0A2Y9FEF4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1RQZ5_G1RQZ5_NOMLE_61853 and tr_A0A384AJM2_A0A384AJM2_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1S4F4_G1S4F4_NOMLE_61853 and tr_G3S4D7_G3S4D7_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1S4F4_G1S4F4_NOMLE_61853 and tr_H2PD15_H2PD15_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1S4F4_G1S4F4_NOMLE_61853 and sp_Q1EGL1_LGI2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S4F4_G1S4F4_NOMLE_61853 and sp_Q8N0V4_LGI2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S4F4_G1S4F4_NOMLE_61853 and tr_A0A2R9CFS4_A0A2R9CFS4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NT58_G1NT58_MYOLU_59463 and tr_I3MCQ8_I3MCQ8_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1NT58_G1NT58_MYOLU_59463 and tr_A0A1U7TYA5_A0A1U7TYA5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_F6Y7S8_F6Y7S8_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_W5P8V3_W5P8V3_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_F7ESR8_F7ESR8_RAT_10116 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_G3SQI7_G3SQI7_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_U3FXW7_U3FXW7_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_I3LK56_I3LK56_PIG_9823 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_F1MZT1_F1MZT1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_L5K534_L5K534_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_A0A1S3AHD8_A0A1S3AHD8_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_A0A1U7TML8_A0A1U7TML8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_A0A2U4ARM6_A0A2U4ARM6_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_A0A2Y9DJ34_A0A2Y9DJ34_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_A0A2Y9MV37_A0A2Y9MV37_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_A0A2Y9S9B3_A0A2Y9S9B3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1P5S4_G1P5S4_MYOLU_59463 and tr_A0A383Z085_A0A383Z085_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3HAB5_G3HAB5_CRIGR_10029 and tr_G5BGZ3_G5BGZ3_HETGA_10181 are exactly identical! WARNING: Sequences tr_G3HAB5_G3HAB5_CRIGR_10029 and tr_L5KGH4_L5KGH4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G3RBG8_G3RBG8_GORGO_9595 and tr_A0A2J8QSP5_A0A2J8QSP5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RBG8_G3RBG8_GORGO_9595 and tr_I3N464_I3N464_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G3RBG8_G3RBG8_GORGO_9595 and tr_F7HGM2_F7HGM2_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RBG8_G3RBG8_GORGO_9595 and tr_G7PS63_G7PS63_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3RBG8_G3RBG8_GORGO_9595 and tr_A0A096MLM9_A0A096MLM9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RBG8_G3RBG8_GORGO_9595 and tr_A0A0D9S9L9_A0A0D9S9L9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RBG8_G3RBG8_GORGO_9595 and tr_A0A2K6AVP4_A0A2K6AVP4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RBG8_G3RBG8_GORGO_9595 and tr_A0A2R9ARM5_A0A2R9ARM5_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_G1SEC1_G1SEC1_RABIT_9986 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_H2QPA1_H2QPA1_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_H0VQF5_H0VQF5_CAVPO_10141 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and sp_Q8IWK6_AGRA3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_F7GX18_F7GX18_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_G1LIS6_G1LIS6_AILME_9646 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_G7P5C1_G7P5C1_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_F1MK80_F1MK80_BOVIN_9913 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_A0A096NZJ3_A0A096NZJ3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_A0A1S3EK68_A0A1S3EK68_DIPOR_10020 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_A0A2K5NRC8_A0A2K5NRC8_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_A0A2K6BP17_A0A2K6BP17_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_A0A2K6A2M3_A0A2K6A2M3_MANLE_9568 are exactly identical! WARNING: Sequences tr_H2PD06_H2PD06_PONAB_9601 and tr_A0A2Y9MN56_A0A2Y9MN56_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1STL8_G1STL8_RABIT_9986 and tr_W5P062_W5P062_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1STL8_G1STL8_RABIT_9986 and tr_H0WZM9_H0WZM9_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1STL8_G1STL8_RABIT_9986 and tr_G5C705_G5C705_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1STL8_G1STL8_RABIT_9986 and tr_A0A091DHD6_A0A091DHD6_FUKDA_885580 are exactly identical! WARNING: Sequences tr_E2R6L3_E2R6L3_CANLF_9615 and sp_Q8K4Y5_LGI1_RAT_10116 are exactly identical! WARNING: Sequences tr_E2R6L3_E2R6L3_CANLF_9615 and tr_D2H3C7_D2H3C7_AILME_9646 are exactly identical! WARNING: Sequences tr_E2R6L3_E2R6L3_CANLF_9615 and tr_A0A2I2V1N8_A0A2I2V1N8_FELCA_9685 are exactly identical! WARNING: Sequences tr_E2R6L3_E2R6L3_CANLF_9615 and tr_A0A1S2ZBI7_A0A1S2ZBI7_ERIEU_9365 are exactly identical! WARNING: Sequences tr_E2R6L3_E2R6L3_CANLF_9615 and tr_A0A1U7Q4M7_A0A1U7Q4M7_MESAU_10036 are exactly identical! WARNING: Sequences tr_E2R6L3_E2R6L3_CANLF_9615 and tr_A0A384CJ90_A0A384CJ90_URSMA_29073 are exactly identical! WARNING: Sequences tr_H2QG17_H2QG17_PANTR_9598 and sp_Q8N135_LGI4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QG17_H2QG17_PANTR_9598 and tr_A0A2R9AUI5_A0A2R9AUI5_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6US32_F6US32_MONDO_13616 and tr_G3W3G3_G3W3G3_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7E6S6_F7E6S6_MONDO_13616 and tr_G3X3M0_G3X3M0_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5NWE6_W5NWE6_SHEEP_9940 and tr_Q58CS0_Q58CS0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P5J3_W5P5J3_SHEEP_9940 and tr_G3STA4_G3STA4_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3ZN17_M3ZN17_XIPMA_8083 and tr_A0A087YIA7_A0A087YIA7_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZU71_M3ZU71_XIPMA_8083 and tr_A0A087XDB1_A0A087XDB1_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AAS4_M4AAS4_XIPMA_8083 and tr_A0A087X8W7_A0A087X8W7_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AYQ2_M4AYQ2_XIPMA_8083 and tr_A0A087YRR4_A0A087YRR4_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AZ32_M4AZ32_XIPMA_8083 and tr_A0A087YRP5_A0A087YRP5_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4B0Q2_M4B0Q2_XIPMA_8083 and tr_A0A087YRQ8_A0A087YRQ8_POEFO_48698 are exactly identical! WARNING: Sequences tr_H0WNU9_H0WNU9_OTOGA_30611 and sp_O94898_LRIG2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H0WNU9_H0WNU9_OTOGA_30611 and tr_F6WLG2_F6WLG2_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2VB47_H2VB47_TAKRU_31033 and tr_Q4RQ15_Q4RQ15_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A286XGD6_A0A286XGD6_CAVPO_10141 and tr_G5B025_G5B025_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A286XGD6_A0A286XGD6_CAVPO_10141 and tr_A0A091CTG4_A0A091CTG4_FUKDA_885580 are exactly identical! WARNING: Sequences tr_H0VW94_H0VW94_CAVPO_10141 and tr_G5C8J0_G5C8J0_HETGA_10181 are exactly identical! WARNING: Sequences tr_H0VW94_H0VW94_CAVPO_10141 and tr_A0A091DAP7_A0A091DAP7_FUKDA_885580 are exactly identical! WARNING: Sequences tr_H0VW94_H0VW94_CAVPO_10141 and tr_A0A1S3WJC7_A0A1S3WJC7_ERIEU_9365 are exactly identical! WARNING: Sequences tr_H0VW94_H0VW94_CAVPO_10141 and tr_A0A1U7TA69_A0A1U7TA69_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H0VW94_H0VW94_CAVPO_10141 and tr_A0A2Y9D8Z3_A0A2Y9D8Z3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A1D5Q408_A0A1D5Q408_MACMU_9544 and tr_A0A2I3M0P6_A0A2I3M0P6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5Q408_A0A1D5Q408_MACMU_9544 and tr_A0A2K5NYV6_A0A2K5NYV6_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6TF31_F6TF31_MACMU_9544 and tr_G7NW71_G7NW71_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6TF31_F6TF31_MACMU_9544 and tr_A0A096MY46_A0A096MY46_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6TF31_F6TF31_MACMU_9544 and tr_A0A2K6A5Y4_A0A2K6A5Y4_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7EEM4_F7EEM4_MACMU_9544 and tr_A0A2K6C3V5_A0A2K6C3V5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H5I3_F7H5I3_MACMU_9544 and tr_G7PX81_G7PX81_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H5I3_F7H5I3_MACMU_9544 and tr_A0A0A0MVA1_A0A0A0MVA1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7H5I3_F7H5I3_MACMU_9544 and tr_A0A0D9QWY4_A0A0D9QWY4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7H5I3_F7H5I3_MACMU_9544 and tr_A0A2K5LDY8_A0A2K5LDY8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7H5I3_F7H5I3_MACMU_9544 and tr_A0A2K5XWJ8_A0A2K5XWJ8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3SY33_G3SY33_LOXAF_9785 and tr_A0A2Y9D8L1_A0A2Y9D8L1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G3TKR1_G3TKR1_LOXAF_9785 and tr_A0A2Y9DW65_A0A2Y9DW65_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G3WQI0_G3WQI0_SARHA_9305 and tr_A0A2Y9EQA3_A0A2Y9EQA3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_H0ZEE0_H0ZEE0_TAEGU_59729 and tr_A0A218UXQ2_A0A218UXQ2_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZGK6_H0ZGK6_TAEGU_59729 and tr_A0A093GK97_A0A093GK97_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F6ZMC6_F6ZMC6_XENTR_8364 and tr_A0A1L8GDV6_A0A1L8GDV6_XENLA_8355 are exactly identical! WARNING: Sequences tr_F1SC71_F1SC71_PIG_9823 and tr_A0A1S3GM78_A0A1S3GM78_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1LP95_G1LP95_AILME_9646 and tr_A0A384BPM1_A0A384BPM1_URSMA_29073 are exactly identical! WARNING: Sequences tr_U3J2A6_U3J2A6_ANAPL_8839 and tr_A0A091K4H1_A0A091K4H1_EGRGA_188379 are exactly identical! WARNING: Sequences tr_U3J2A6_U3J2A6_ANAPL_8839 and tr_A0A091ULK6_A0A091ULK6_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3J2A6_U3J2A6_ANAPL_8839 and tr_A0A087QZ36_A0A087QZ36_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3J2A6_U3J2A6_ANAPL_8839 and tr_A0A091W9P0_A0A091W9P0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_U3J2A6_U3J2A6_ANAPL_8839 and tr_A0A0A0AT31_A0A0A0AT31_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0D9RVH3_A0A0D9RVH3_CHLSB_60711 and tr_A0A2K5M4J1_A0A2K5M4J1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9RVH3_A0A0D9RVH3_CHLSB_60711 and tr_A0A2K6DTF5_A0A2K6DTF5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0D9RVH3_A0A0D9RVH3_CHLSB_60711 and tr_A0A2K5YJC8_A0A2K5YJC8_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0D9RVN6_A0A0D9RVN6_CHLSB_60711 and tr_A0A2K6AVY7_A0A2K6AVY7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A151NT85_A0A151NT85_ALLMI_8496 and tr_A0A1U7SDL8_A0A1U7SDL8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151P0E8_A0A151P0E8_ALLMI_8496 and tr_A0A1U8DK51_A0A1U8DK51_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151P0L0_A0A151P0L0_ALLMI_8496 and tr_A0A1U7S9H8_A0A1U7S9H8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3MB24_A0A0Q3MB24_AMAAE_12930 and tr_A0A091EZX5_A0A091EZX5_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A0Q3MB24_A0A0Q3MB24_AMAAE_12930 and tr_A0A091W0B1_A0A091W0B1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A0Q3MB24_A0A0Q3MB24_AMAAE_12930 and tr_A0A0A0APH8_A0A0A0APH8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0Q3MB24_A0A0Q3MB24_AMAAE_12930 and tr_A0A091IFF7_A0A091IFF7_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0Q3MB24_A0A0Q3MB24_AMAAE_12930 and tr_A0A218VCN8_A0A218VCN8_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A0Q3P6V6_A0A0Q3P6V6_AMAAE_12930 and tr_A0A091WMP8_A0A091WMP8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A0Q3P6V6_A0A0Q3P6V6_AMAAE_12930 and tr_A0A087QP01_A0A087QP01_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0Q3P6V6_A0A0Q3P6V6_AMAAE_12930 and tr_A0A2I0LKG1_A0A2I0LKG1_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A0Q3P6V6_A0A0Q3P6V6_AMAAE_12930 and tr_A0A1V4JH02_A0A1V4JH02_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A091VDF3_A0A091VDF3_NIPNI_128390 and tr_A0A087RFE5_A0A087RFE5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091WNE4_A0A091WNE4_NIPNI_128390 and tr_A0A2I0LG82_A0A2I0LG82_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A091WNE4_A0A091WNE4_NIPNI_128390 and tr_A0A1V4KEA7_A0A1V4KEA7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0LGC9_A0A2I0LGC9_COLLI_8932 and tr_A0A1V4KHW3_A0A1V4KHW3_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0LV52_A0A2I0LV52_COLLI_8932 and tr_A0A1V4KJ25_A0A1V4KJ25_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3KPH7_A0A1S3KPH7_SALSA_8030 and tr_A0A060YTF4_A0A060YTF4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3LZV9_A0A1S3LZV9_SALSA_8030 and tr_A0A060YIN0_A0A060YIN0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3ML08_A0A1S3ML08_SALSA_8030 and tr_A0A060XGK4_A0A060XGK4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MLA6_A0A1S3MLA6_SALSA_8030 and tr_A0A060XRH1_A0A060XRH1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MVH2_A0A1S3MVH2_SALSA_8030 and tr_A0A060XQR0_A0A060XQR0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NKB2_A0A1S3NKB2_SALSA_8030 and tr_A0A060VNA7_A0A060VNA7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3SF24_A0A1S3SF24_SALSA_8030 and tr_A0A060WW36_A0A060WW36_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3SV56_A0A1S3SV56_SALSA_8030 and tr_A0A060X4X4_A0A060X4X4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B5X3G0_B5X3G0_SALSA_8030 and tr_A0A060W846_A0A060W846_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MA54_A0A226MA54_CALSU_9009 and tr_A0A226MBI0_A0A226MBI0_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A226MA54_A0A226MA54_CALSU_9009 and tr_A0A226MCE1_A0A226MCE1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MYW8_A0A226MYW8_CALSU_9009 and tr_A0A226PS36_A0A226PS36_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U4AQQ1_A0A2U4AQQ1_TURTR_9739 and tr_A0A2Y9PWH9_A0A2Y9PWH9_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AQQ1_A0A2U4AQQ1_TURTR_9739 and tr_A0A2Y9FMJ1_A0A2Y9FMJ1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4AQQ1_A0A2U4AQQ1_TURTR_9739 and tr_A0A383ZUE1_A0A383ZUE1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4BTU3_A0A2U4BTU3_TURTR_9739 and tr_A0A2Y9P7I9_A0A2Y9P7I9_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BTU3_A0A2U4BTU3_TURTR_9739 and tr_A0A2Y9EPG0_A0A2Y9EPG0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4BTU3_A0A2U4BTU3_TURTR_9739 and tr_A0A383YQZ4_A0A383YQZ4_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3VIC8_A0A2U3VIC8_ODORO_9708 and tr_A0A2U3YCR3_A0A2U3YCR3_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 332 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N135/3_mltree/Q8N135.raxml.reduced.phy Alignment comprises 1 partitions and 119 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 119 / 119 Gaps: 2.85 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N135/3_mltree/Q8N135.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 992 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 119 / 9520 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -223159.949933] Initial branch length optimization [00:00:02 -179492.401948] Model parameter optimization (eps = 10.000000) [00:00:22 -179397.075221] AUTODETECT spr round 1 (radius: 5) [00:02:09 -113414.346497] AUTODETECT spr round 2 (radius: 10) [00:04:00 -77050.810600] AUTODETECT spr round 3 (radius: 15) [00:05:57 -58307.628111] AUTODETECT spr round 4 (radius: 20) [00:07:56 -51846.629886] AUTODETECT spr round 5 (radius: 25) [00:10:48 -47321.766733] SPR radius for FAST iterations: 25 (autodetect) [00:10:48 -47321.766733] Model parameter optimization (eps = 3.000000) [00:11:08 -47249.059766] FAST spr round 1 (radius: 25) [00:12:59 -38197.890346] FAST spr round 2 (radius: 25) [00:14:27 -37317.172993] FAST spr round 3 (radius: 25) [00:15:49 -37266.261202] FAST spr round 4 (radius: 25) [00:17:02 -37262.858538] FAST spr round 5 (radius: 25) [00:18:13 -37262.857778] Model parameter optimization (eps = 1.000000) [00:18:26 -37255.306367] SLOW spr round 1 (radius: 5) [00:19:50 -37243.265055] SLOW spr round 2 (radius: 5) [00:21:16 -37239.147366] SLOW spr round 3 (radius: 5) [00:22:40 -37237.039389] SLOW spr round 4 (radius: 5) [00:24:04 -37237.038778] SLOW spr round 5 (radius: 10) [00:25:33 -37236.576937] SLOW spr round 6 (radius: 5) [00:27:16 -37236.576855] SLOW spr round 7 (radius: 10) [00:28:56 -37236.576785] SLOW spr round 8 (radius: 15) [00:30:57 -37236.576747] SLOW spr round 9 (radius: 20) [00:33:51 -37234.241341] SLOW spr round 10 (radius: 5) [00:35:42 -37234.057130] SLOW spr round 11 (radius: 5) [00:37:19 -37234.057068] SLOW spr round 12 (radius: 10) [00:38:55 -37234.057049] SLOW spr round 13 (radius: 15) [00:40:55 -37234.057049] SLOW spr round 14 (radius: 20) [00:43:49 -37234.057049] SLOW spr round 15 (radius: 25) [00:47:36 -37234.057049] Model parameter optimization (eps = 0.100000) [00:47:40] [worker #0] ML tree search #1, logLikelihood: -37234.013851 [00:47:40 -224177.037718] Initial branch length optimization [00:47:43 -180956.273674] Model parameter optimization (eps = 10.000000) [00:48:09 -180771.587336] AUTODETECT spr round 1 (radius: 5) [00:49:54 -112428.142063] AUTODETECT spr round 2 (radius: 10) [00:51:49 -77906.819613] AUTODETECT spr round 3 (radius: 15) [00:52:18] [worker #1] ML tree search #2, logLikelihood: -37240.110482 [00:53:52 -60415.574169] AUTODETECT spr round 4 (radius: 20) [00:55:58 -50900.109173] AUTODETECT spr round 5 (radius: 25) [00:58:23 -47402.019194] SPR radius for FAST iterations: 25 (autodetect) [00:58:23 -47402.019194] Model parameter optimization (eps = 3.000000) [00:58:45 -47337.872171] FAST spr round 1 (radius: 25) [01:00:33 -39085.653205] FAST spr round 2 (radius: 25) [01:02:02 -37727.329938] FAST spr round 3 (radius: 25) [01:03:22 -37494.239298] FAST spr round 4 (radius: 25) [01:04:42 -37335.631190] FAST spr round 5 (radius: 25) [01:05:59 -37254.677910] FAST spr round 6 (radius: 25) [01:07:13 -37248.814266] FAST spr round 7 (radius: 25) [01:08:26 -37248.803375] Model parameter optimization (eps = 1.000000) [01:08:40 -37244.211038] SLOW spr round 1 (radius: 5) [01:10:07 -37235.429835] SLOW spr round 2 (radius: 5) [01:11:30 -37235.407297] SLOW spr round 3 (radius: 10) [01:12:57 -37235.406535] SLOW spr round 4 (radius: 15) [01:15:07 -37233.642320] SLOW spr round 5 (radius: 5) [01:16:54 -37233.641783] SLOW spr round 6 (radius: 10) [01:18:36 -37231.702880] SLOW spr round 7 (radius: 5) [01:20:19 -37228.487323] SLOW spr round 8 (radius: 5) [01:21:52 -37228.088260] SLOW spr round 9 (radius: 5) [01:23:18 -37228.066272] SLOW spr round 10 (radius: 10) [01:24:48 -37228.065619] SLOW spr round 11 (radius: 15) [01:27:02 -37228.065552] SLOW spr round 12 (radius: 20) [01:30:06 -37228.065544] SLOW spr round 13 (radius: 25) [01:34:02 -37228.065542] Model parameter optimization (eps = 0.100000) [01:34:11] [worker #0] ML tree search #3, logLikelihood: -37227.822620 [01:34:11 -225196.088201] Initial branch length optimization [01:34:13 -182185.384691] Model parameter optimization (eps = 10.000000) [01:34:30 -182126.020616] AUTODETECT spr round 1 (radius: 5) [01:36:19 -111625.755343] AUTODETECT spr round 2 (radius: 10) [01:38:12 -78707.249342] AUTODETECT spr round 3 (radius: 15) [01:40:13 -62965.445883] AUTODETECT spr round 4 (radius: 20) [01:42:29 -48753.850469] AUTODETECT spr round 5 (radius: 25) [01:44:41 -45750.802106] SPR radius for FAST iterations: 25 (autodetect) [01:44:41 -45750.802106] Model parameter optimization (eps = 3.000000) [01:45:00 -45693.781106] FAST spr round 1 (radius: 25) [01:46:46 -37861.030565] FAST spr round 2 (radius: 25) [01:47:11] [worker #1] ML tree search #4, logLikelihood: -37245.773682 [01:48:16 -37361.650010] FAST spr round 3 (radius: 25) [01:49:39 -37299.985594] FAST spr round 4 (radius: 25) [01:50:56 -37282.274099] FAST spr round 5 (radius: 25) [01:52:10 -37282.273591] Model parameter optimization (eps = 1.000000) [01:52:22 -37275.458095] SLOW spr round 1 (radius: 5) [01:53:49 -37263.231143] SLOW spr round 2 (radius: 5) [01:55:15 -37258.295661] SLOW spr round 3 (radius: 5) [01:56:41 -37258.290242] SLOW spr round 4 (radius: 10) [01:58:13 -37255.456313] SLOW spr round 5 (radius: 5) [01:59:59 -37254.281818] SLOW spr round 6 (radius: 5) [02:01:37 -37251.324295] SLOW spr round 7 (radius: 5) [02:03:08 -37246.691365] SLOW spr round 8 (radius: 5) [02:04:37 -37246.225070] SLOW spr round 9 (radius: 5) [02:06:04 -37246.224590] SLOW spr round 10 (radius: 10) [02:07:35 -37241.859725] SLOW spr round 11 (radius: 5) [02:09:18 -37241.269886] SLOW spr round 12 (radius: 5) [02:10:50 -37241.269222] SLOW spr round 13 (radius: 10) [02:12:21 -37241.269128] SLOW spr round 14 (radius: 15) [02:14:28 -37240.900580] SLOW spr round 15 (radius: 5) [02:16:17 -37240.900558] SLOW spr round 16 (radius: 10) [02:17:58 -37240.900547] SLOW spr round 17 (radius: 15) [02:20:00 -37240.900537] SLOW spr round 18 (radius: 20) [02:22:57 -37240.900527] SLOW spr round 19 (radius: 25) [02:26:38 -37240.900516] Model parameter optimization (eps = 0.100000) [02:26:42] [worker #0] ML tree search #5, logLikelihood: -37240.811086 [02:26:42 -224008.783503] Initial branch length optimization [02:26:45 -181043.965408] Model parameter optimization (eps = 10.000000) [02:27:02 -180940.076961] AUTODETECT spr round 1 (radius: 5) [02:28:50 -113701.388170] AUTODETECT spr round 2 (radius: 10) [02:30:46 -79281.202308] AUTODETECT spr round 3 (radius: 15) [02:32:51 -63731.680900] AUTODETECT spr round 4 (radius: 20) [02:35:00 -56068.918398] AUTODETECT spr round 5 (radius: 25) [02:37:32 -49565.549494] SPR radius for FAST iterations: 25 (autodetect) [02:37:32 -49565.549494] Model parameter optimization (eps = 3.000000) [02:37:50 -49492.878579] FAST spr round 1 (radius: 25) [02:39:51 -38663.204655] FAST spr round 2 (radius: 25) [02:41:25 -37431.094432] FAST spr round 3 (radius: 25) [02:42:49 -37270.452434] FAST spr round 4 (radius: 25) [02:44:09 -37253.467206] FAST spr round 5 (radius: 25) [02:45:22 -37253.023296] FAST spr round 6 (radius: 25) [02:46:35 -37253.023239] Model parameter optimization (eps = 1.000000) [02:46:47 -37243.309575] SLOW spr round 1 (radius: 5) [02:48:11 -37234.658576] SLOW spr round 2 (radius: 5) [02:49:36 -37232.871353] SLOW spr round 3 (radius: 5) [02:51:01 -37232.658139] SLOW spr round 4 (radius: 5) [02:52:27 -37232.658012] SLOW spr round 5 (radius: 10) [02:53:57 -37232.657899] SLOW spr round 6 (radius: 15) [02:56:10 -37232.196193] SLOW spr round 7 (radius: 5) [02:58:01 -37231.809754] SLOW spr round 8 (radius: 5) [02:59:39 -37231.809584] SLOW spr round 9 (radius: 10) [03:01:14 -37228.732422] SLOW spr round 10 (radius: 5) [03:02:55 -37228.166295] SLOW spr round 11 (radius: 5) [03:04:27 -37227.504610] SLOW spr round 12 (radius: 5) [03:05:53 -37227.504608] SLOW spr round 13 (radius: 10) [03:06:38] [worker #1] ML tree search #6, logLikelihood: -37225.319510 [03:07:22 -37227.504608] SLOW spr round 14 (radius: 15) [03:09:29 -37227.504607] SLOW spr round 15 (radius: 20) [03:12:32 -37227.504607] SLOW spr round 16 (radius: 25) [03:16:26 -37227.504607] Model parameter optimization (eps = 0.100000) [03:16:30] [worker #0] ML tree search #7, logLikelihood: -37227.440995 [03:16:30 -224209.201415] Initial branch length optimization [03:16:32 -180612.773695] Model parameter optimization (eps = 10.000000) [03:16:51 -180519.898401] AUTODETECT spr round 1 (radius: 5) [03:18:36 -110340.059842] AUTODETECT spr round 2 (radius: 10) [03:20:32 -73525.682677] AUTODETECT spr round 3 (radius: 15) [03:22:29 -59337.268448] AUTODETECT spr round 4 (radius: 20) [03:24:42 -52837.370492] AUTODETECT spr round 5 (radius: 25) [03:27:18 -51307.716240] SPR radius for FAST iterations: 25 (autodetect) [03:27:18 -51307.716240] Model parameter optimization (eps = 3.000000) [03:27:41 -51251.604449] FAST spr round 1 (radius: 25) [03:29:34 -40354.497638] FAST spr round 2 (radius: 25) [03:31:12 -37952.343414] FAST spr round 3 (radius: 25) [03:32:41 -37342.900451] FAST spr round 4 (radius: 25) [03:34:04 -37278.695401] FAST spr round 5 (radius: 25) [03:35:17 -37278.427697] FAST spr round 6 (radius: 25) [03:36:29 -37278.427472] Model parameter optimization (eps = 1.000000) [03:36:43 -37271.555842] SLOW spr round 1 (radius: 5) [03:38:10 -37262.067465] SLOW spr round 2 (radius: 5) [03:39:34 -37261.425744] SLOW spr round 3 (radius: 5) [03:41:00 -37261.424215] SLOW spr round 4 (radius: 10) [03:42:32 -37251.802275] SLOW spr round 5 (radius: 5) [03:44:17 -37249.485410] SLOW spr round 6 (radius: 5) [03:45:52 -37249.053157] SLOW spr round 7 (radius: 5) [03:47:20 -37249.051860] SLOW spr round 8 (radius: 10) [03:48:51 -37249.051641] SLOW spr round 9 (radius: 15) [03:50:57 -37248.386562] SLOW spr round 10 (radius: 5) [03:52:43 -37248.385925] SLOW spr round 11 (radius: 10) [03:54:25 -37244.757491] SLOW spr round 12 (radius: 5) [03:56:06 -37243.295646] SLOW spr round 13 (radius: 5) [03:57:37 -37243.293533] SLOW spr round 14 (radius: 10) [03:59:06 -37243.292932] SLOW spr round 15 (radius: 15) [04:01:09 -37243.292658] SLOW spr round 16 (radius: 20) [04:03:58 -37243.292473] SLOW spr round 17 (radius: 25) [04:04:35] [worker #1] ML tree search #8, logLikelihood: -37254.505596 [04:07:39 -37243.292310] Model parameter optimization (eps = 0.100000) [04:07:43] [worker #0] ML tree search #9, logLikelihood: -37243.215853 [04:07:44 -225348.862735] Initial branch length optimization [04:07:46 -181064.243437] Model parameter optimization (eps = 10.000000) [04:08:10 -180940.020431] AUTODETECT spr round 1 (radius: 5) [04:10:00 -113180.541758] AUTODETECT spr round 2 (radius: 10) [04:11:51 -80512.609815] AUTODETECT spr round 3 (radius: 15) [04:13:54 -61883.218755] AUTODETECT spr round 4 (radius: 20) [04:16:10 -51686.592400] AUTODETECT spr round 5 (radius: 25) [04:18:42 -47223.073155] SPR radius for FAST iterations: 25 (autodetect) [04:18:42 -47223.073155] Model parameter optimization (eps = 3.000000) [04:19:05 -47132.202806] FAST spr round 1 (radius: 25) [04:20:48 -38248.000775] FAST spr round 2 (radius: 25) [04:22:21 -37391.848083] FAST spr round 3 (radius: 25) [04:23:44 -37307.776629] FAST spr round 4 (radius: 25) [04:25:03 -37285.130474] FAST spr round 5 (radius: 25) [04:26:19 -37279.838063] FAST spr round 6 (radius: 25) [04:27:34 -37276.730622] FAST spr round 7 (radius: 25) [04:28:50 -37271.308763] FAST spr round 8 (radius: 25) [04:30:04 -37271.086878] FAST spr round 9 (radius: 25) [04:31:18 -37266.980464] FAST spr round 10 (radius: 25) [04:32:30 -37266.762843] FAST spr round 11 (radius: 25) [04:33:43 -37266.751060] Model parameter optimization (eps = 1.000000) [04:33:54 -37255.386220] SLOW spr round 1 (radius: 5) [04:35:19 -37246.510904] SLOW spr round 2 (radius: 5) [04:36:44 -37246.168626] SLOW spr round 3 (radius: 5) [04:38:08 -37246.168183] SLOW spr round 4 (radius: 10) [04:39:39 -37240.335498] SLOW spr round 5 (radius: 5) [04:41:23 -37236.743729] SLOW spr round 6 (radius: 5) [04:42:58 -37232.878928] SLOW spr round 7 (radius: 5) [04:43:42] [worker #1] ML tree search #10, logLikelihood: -37232.288406 [04:44:26 -37232.878539] SLOW spr round 8 (radius: 10) [04:45:58 -37232.878398] SLOW spr round 9 (radius: 15) [04:48:08 -37232.878364] SLOW spr round 10 (radius: 20) [04:50:59 -37232.878355] SLOW spr round 11 (radius: 25) [04:54:47 -37232.878353] Model parameter optimization (eps = 0.100000) [04:54:51] [worker #0] ML tree search #11, logLikelihood: -37232.827975 [04:54:51 -224988.371323] Initial branch length optimization [04:54:54 -180999.049740] Model parameter optimization (eps = 10.000000) [04:55:19 -180868.806418] AUTODETECT spr round 1 (radius: 5) [04:57:07 -114479.167108] AUTODETECT spr round 2 (radius: 10) [04:59:05 -78483.936645] AUTODETECT spr round 3 (radius: 15) [05:01:07 -59207.706331] AUTODETECT spr round 4 (radius: 20) [05:03:14 -49088.153638] AUTODETECT spr round 5 (radius: 25) [05:05:36 -43721.609147] SPR radius for FAST iterations: 25 (autodetect) [05:05:36 -43721.609147] Model parameter optimization (eps = 3.000000) [05:05:59 -43672.913505] FAST spr round 1 (radius: 25) [05:07:45 -37800.175176] FAST spr round 2 (radius: 25) [05:09:12 -37338.896896] FAST spr round 3 (radius: 25) [05:10:29 -37299.007918] FAST spr round 4 (radius: 25) [05:11:40 -37293.344115] FAST spr round 5 (radius: 25) [05:12:50 -37292.332007] FAST spr round 6 (radius: 25) [05:14:00 -37281.114573] FAST spr round 7 (radius: 25) [05:15:09 -37279.846185] FAST spr round 8 (radius: 25) [05:16:17 -37279.845077] Model parameter optimization (eps = 1.000000) [05:16:33 -37267.976239] SLOW spr round 1 (radius: 5) [05:17:52 -37247.606228] SLOW spr round 2 (radius: 5) [05:19:12 -37241.729127] SLOW spr round 3 (radius: 5) [05:20:31 -37241.048936] SLOW spr round 4 (radius: 5) [05:21:50 -37241.048069] SLOW spr round 5 (radius: 10) [05:23:15 -37235.786902] SLOW spr round 6 (radius: 5) [05:24:55 -37232.558363] SLOW spr round 7 (radius: 5) [05:26:24 -37232.557267] SLOW spr round 8 (radius: 10) [05:27:44] [worker #1] ML tree search #12, logLikelihood: -37236.073601 [05:27:54 -37232.557143] SLOW spr round 9 (radius: 15) [05:29:56 -37232.276440] SLOW spr round 10 (radius: 5) [05:31:40 -37231.640586] SLOW spr round 11 (radius: 5) [05:33:13 -37231.640541] SLOW spr round 12 (radius: 10) [05:34:44 -37231.640538] SLOW spr round 13 (radius: 15) [05:36:48 -37231.640537] SLOW spr round 14 (radius: 20) [05:40:10 -37231.640537] SLOW spr round 15 (radius: 25) [05:44:32 -37231.640537] Model parameter optimization (eps = 0.100000) [05:44:38] [worker #0] ML tree search #13, logLikelihood: -37231.453642 [05:44:38 -224521.477941] Initial branch length optimization [05:44:41 -182454.505485] Model parameter optimization (eps = 10.000000) [05:45:07 -182314.167730] AUTODETECT spr round 1 (radius: 5) [05:47:07 -110767.459875] AUTODETECT spr round 2 (radius: 10) [05:49:14 -78093.598746] AUTODETECT spr round 3 (radius: 15) [05:51:26 -62340.802369] AUTODETECT spr round 4 (radius: 20) [05:53:41 -53280.490530] AUTODETECT spr round 5 (radius: 25) [05:56:08 -50949.240225] SPR radius for FAST iterations: 25 (autodetect) [05:56:08 -50949.240225] Model parameter optimization (eps = 3.000000) [05:56:32 -50874.701547] FAST spr round 1 (radius: 25) [05:58:30 -39037.892655] FAST spr round 2 (radius: 25) [06:00:08 -37642.734468] FAST spr round 3 (radius: 25) [06:01:37 -37310.564252] FAST spr round 4 (radius: 25) [06:03:02 -37248.894574] FAST spr round 5 (radius: 25) [06:04:21 -37247.263672] FAST spr round 6 (radius: 25) [06:05:39 -37246.941317] FAST spr round 7 (radius: 25) [06:06:57 -37246.941116] Model parameter optimization (eps = 1.000000) [06:07:09 -37245.052918] SLOW spr round 1 (radius: 5) [06:08:42 -37237.245990] SLOW spr round 2 (radius: 5) [06:10:13 -37235.975862] SLOW spr round 3 (radius: 5) [06:11:45 -37235.971383] SLOW spr round 4 (radius: 10) [06:13:24 -37228.560515] SLOW spr round 5 (radius: 5) [06:15:17 -37226.313232] SLOW spr round 6 (radius: 5) [06:17:00 -37226.249035] SLOW spr round 7 (radius: 10) [06:18:42 -37226.248290] SLOW spr round 8 (radius: 15) [06:21:02 -37225.924007] SLOW spr round 9 (radius: 5) [06:23:00 -37225.192225] SLOW spr round 10 (radius: 5) [06:24:41 -37225.185640] SLOW spr round 11 (radius: 10) [06:26:22 -37225.185577] SLOW spr round 12 (radius: 15) [06:28:36 -37225.185525] SLOW spr round 13 (radius: 20) [06:31:54 -37225.185512] SLOW spr round 14 (radius: 25) [06:36:08 -37225.185500] Model parameter optimization (eps = 0.100000) [06:36:15] [worker #0] ML tree search #15, logLikelihood: -37225.070942 [06:36:15 -223962.734241] Initial branch length optimization [06:36:18 -180257.460394] Model parameter optimization (eps = 10.000000) [06:36:39 -180135.938274] AUTODETECT spr round 1 (radius: 5) [06:38:34 -114709.937550] AUTODETECT spr round 2 (radius: 10) [06:39:33] [worker #1] ML tree search #14, logLikelihood: -37238.990154 [06:40:33 -80250.724794] AUTODETECT spr round 3 (radius: 15) [06:42:48 -63420.554240] AUTODETECT spr round 4 (radius: 20) [06:45:10 -52808.863890] AUTODETECT spr round 5 (radius: 25) [06:48:07 -46923.359245] SPR radius for FAST iterations: 25 (autodetect) [06:48:07 -46923.359245] Model parameter optimization (eps = 3.000000) [06:48:29 -46830.339754] FAST spr round 1 (radius: 25) [06:50:39 -38594.091750] FAST spr round 2 (radius: 25) [06:52:20 -37650.301985] FAST spr round 3 (radius: 25) [06:53:51 -37328.481510] FAST spr round 4 (radius: 25) [06:55:17 -37264.846926] FAST spr round 5 (radius: 25) [06:56:37 -37262.260865] FAST spr round 6 (radius: 25) [06:57:55 -37262.259364] Model parameter optimization (eps = 1.000000) [06:58:05 -37258.685229] SLOW spr round 1 (radius: 5) [06:59:38 -37251.910275] SLOW spr round 2 (radius: 5) [07:01:12 -37247.772465] SLOW spr round 3 (radius: 5) [07:02:45 -37247.552312] SLOW spr round 4 (radius: 5) [07:04:17 -37247.552148] SLOW spr round 5 (radius: 10) [07:05:56 -37247.355855] SLOW spr round 6 (radius: 5) [07:07:48 -37247.355755] SLOW spr round 7 (radius: 10) [07:09:35 -37246.719769] SLOW spr round 8 (radius: 5) [07:11:22 -37245.528045] SLOW spr round 9 (radius: 5) [07:13:00 -37245.527893] SLOW spr round 10 (radius: 10) [07:14:37 -37245.527886] SLOW spr round 11 (radius: 15) [07:16:54 -37244.985506] SLOW spr round 12 (radius: 5) [07:18:49 -37242.664119] SLOW spr round 13 (radius: 5) [07:20:30 -37242.657072] SLOW spr round 14 (radius: 10) [07:22:10 -37242.657060] SLOW spr round 15 (radius: 15) [07:24:22 -37242.657058] SLOW spr round 16 (radius: 20) [07:27:39 -37242.657057] SLOW spr round 17 (radius: 25) [07:28:39] [worker #1] ML tree search #16, logLikelihood: -37222.405076 [07:31:46 -37242.657057] Model parameter optimization (eps = 0.100000) [07:31:50] [worker #0] ML tree search #17, logLikelihood: -37242.646318 [07:31:50 -225307.193209] Initial branch length optimization [07:31:53 -182048.072593] Model parameter optimization (eps = 10.000000) [07:32:18 -181904.652993] AUTODETECT spr round 1 (radius: 5) [07:34:16 -111051.974721] AUTODETECT spr round 2 (radius: 10) [07:36:21 -82082.343624] AUTODETECT spr round 3 (radius: 15) [07:38:46 -60918.477683] AUTODETECT spr round 4 (radius: 20) [07:41:01 -48707.673867] AUTODETECT spr round 5 (radius: 25) [07:43:35 -45717.935058] SPR radius for FAST iterations: 25 (autodetect) [07:43:35 -45717.935058] Model parameter optimization (eps = 3.000000) [07:44:08 -45658.210785] FAST spr round 1 (radius: 25) [07:46:14 -38127.884360] FAST spr round 2 (radius: 25) [07:47:56 -37470.234571] FAST spr round 3 (radius: 25) [07:49:22 -37271.111744] FAST spr round 4 (radius: 25) [07:50:45 -37261.933670] FAST spr round 5 (radius: 25) [07:52:02 -37261.930136] Model parameter optimization (eps = 1.000000) [07:52:16 -37257.708558] SLOW spr round 1 (radius: 5) [07:53:48 -37252.888028] SLOW spr round 2 (radius: 5) [07:55:19 -37251.918477] SLOW spr round 3 (radius: 5) [07:56:47 -37251.918061] SLOW spr round 4 (radius: 10) [07:58:21 -37251.112663] SLOW spr round 5 (radius: 5) [08:00:11 -37249.332142] SLOW spr round 6 (radius: 5) [08:01:49 -37249.325719] SLOW spr round 7 (radius: 10) [08:03:27 -37249.323797] SLOW spr round 8 (radius: 15) [08:05:45 -37236.162097] SLOW spr round 9 (radius: 5) [08:07:42 -37234.966508] SLOW spr round 10 (radius: 5) [08:09:24 -37234.965852] SLOW spr round 11 (radius: 10) [08:11:06 -37230.918244] SLOW spr round 12 (radius: 5) [08:12:54 -37230.606093] SLOW spr round 13 (radius: 5) [08:14:32 -37229.810768] SLOW spr round 14 (radius: 5) [08:16:01 -37229.810043] SLOW spr round 15 (radius: 10) [08:17:35 -37228.605308] SLOW spr round 16 (radius: 5) [08:19:25 -37228.254238] SLOW spr round 17 (radius: 5) [08:21:03 -37228.253363] SLOW spr round 18 (radius: 10) [08:21:50] [worker #1] ML tree search #18, logLikelihood: -37238.781442 [08:22:41 -37225.391736] SLOW spr round 19 (radius: 5) [08:24:29 -37225.389984] SLOW spr round 20 (radius: 10) [08:26:13 -37225.389979] SLOW spr round 21 (radius: 15) [08:28:24 -37225.389977] SLOW spr round 22 (radius: 20) [08:31:38 -37225.389975] SLOW spr round 23 (radius: 25) [08:35:36 -37225.389974] Model parameter optimization (eps = 0.100000) [08:35:42] [worker #0] ML tree search #19, logLikelihood: -37225.290225 [09:15:32] [worker #1] ML tree search #20, logLikelihood: -37233.456949 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.157608,0.280353) (0.203256,0.459669) (0.381152,1.011075) (0.257984,1.848991) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -37222.405076 AIC score: 78418.810151 / AICc score: 7978730.810151 / BIC score: 83940.928532 Free parameters (model + branch lengths): 1987 WARNING: Number of free parameters (K=1987) is larger than alignment size (n=119). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N135/3_mltree/Q8N135.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N135/3_mltree/Q8N135.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N135/3_mltree/Q8N135.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8N135/3_mltree/Q8N135.raxml.log Analysis started: 01-Jul-2021 00:55:43 / finished: 01-Jul-2021 10:11:15 Elapsed time: 33332.555 seconds Consumed energy: 2752.749 Wh (= 14 km in an electric car, or 69 km with an e-scooter!)