RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 30-Jun-2021 17:50:15 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IY33/2_msa/Q8IY33_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IY33/3_mltree/Q8IY33 --seed 2 --threads 4 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IY33/2_msa/Q8IY33_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 224 sites WARNING: Sequences tr_B4R6L6_B4R6L6_DROSI_7240 and tr_B4IF34_B4IF34_DROSE_7238 are exactly identical! WARNING: Sequences tr_E2ATM6_E2ATM6_CAMFO_104421 and tr_A0A158NGS2_A0A158NGS2_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2ATM6_E2ATM6_CAMFO_104421 and tr_A0A151X1T6_A0A151X1T6_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2ATM6_E2ATM6_CAMFO_104421 and tr_A0A195BVX4_A0A195BVX4_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2ATM6_E2ATM6_CAMFO_104421 and tr_A0A195EU35_A0A195EU35_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A2R8QKL4_A0A2R8QKL4_DANRE_7955 and tr_E7FDY6_E7FDY6_DANRE_7955 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_G1MU81_G1MU81_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_F7FJS9_F7FJS9_ORNAN_9258 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_G3W8Y7_G3W8Y7_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_H0ZA36_H0ZA36_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_U3K9Y0_U3K9Y0_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_R0LN18_R0LN18_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_A0A093H9I6_A0A093H9I6_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_A0A099ZFB3_A0A099ZFB3_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_A0A093IP95_A0A093IP95_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_A0A091ILB0_A0A091ILB0_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_A0A1V4IHD4_A0A1V4IHD4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_A0A218UIK1_A0A218UIK1_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_A0A226MIJ8_A0A226MIJ8_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PJY1_A0A1D5PJY1_CHICK_9031 and tr_A0A226P2N7_A0A226P2N7_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1BXR9_E1BXR9_CHICK_9031 and tr_A0A0A0A2N2_A0A0A0A2N2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E9PX29_E9PX29_MOUSE_10090 and tr_A0A0G2K677_A0A0G2K677_RAT_10116 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_M3YH04_M3YH04_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_G1PBN3_G1PBN3_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_H2P675_H2P675_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_F1PXU1_F1PXU1_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_F6UM00_F6UM00_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_W5NZX9_W5NZX9_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_A0A0G2K8W9_A0A0G2K8W9_RAT_10116 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_I3M6R6_I3M6R6_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_H0WVX1_H0WVX1_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_A0A286XTX7_A0A286XTX7_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and sp_Q01082_SPTB2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_F7H0A9_F7H0A9_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_A0A287BJV2_A0A287BJV2_PIG_9823 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_F1MYC9_F1MYC9_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_A0A2I2UGD2_A0A2I2UGD2_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_A0A0D9RN38_A0A0D9RN38_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_A0A1S3FBR7_A0A1S3FBR7_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_A0A1U7SE40_A0A1U7SE40_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_A0A1U7QBK2_A0A1U7QBK2_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_A0A2U3W6B0_A0A2U3W6B0_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_A0A2Y9JJV6_A0A2Y9JJV6_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q62261_SPTB2_MOUSE_10090 and tr_A0A2Y9SF26_A0A2Y9SF26_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XWH4_M3XWH4_MUSPF_9669 and tr_A0A2I2U9P4_A0A2I2U9P4_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XWH4_M3XWH4_MUSPF_9669 and tr_A0A2Y9JYC5_A0A2Y9JYC5_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P18091_ACTN_DROME_7227 and tr_Q29J93_Q29J93_DROPS_46245 are exactly identical! WARNING: Sequences sp_P18091_ACTN_DROME_7227 and tr_B4NBX2_B4NBX2_DROWI_7260 are exactly identical! WARNING: Sequences sp_P18091_ACTN_DROME_7227 and tr_B3MYQ6_B3MYQ6_DROAN_7217 are exactly identical! WARNING: Sequences sp_P18091_ACTN_DROME_7227 and tr_A0A0Q9WG66_A0A0Q9WG66_DROVI_7244 are exactly identical! WARNING: Sequences sp_P18091_ACTN_DROME_7227 and tr_B4L2K7_B4L2K7_DROMO_7230 are exactly identical! WARNING: Sequences sp_P18091_ACTN_DROME_7227 and tr_A0A0M4EIB6_A0A0M4EIB6_DROBS_30019 are exactly identical! WARNING: Sequences sp_P18091_ACTN_DROME_7227 and tr_A0A1W4VEA9_A0A1W4VEA9_DROFC_30025 are exactly identical! WARNING: Sequences tr_G1R8P5_G1R8P5_NOMLE_61853 and tr_A0A2I2Z1Q0_A0A2I2Z1Q0_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R8P5_G1R8P5_NOMLE_61853 and tr_A0A2I3TBJ7_A0A2I3TBJ7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R8P5_G1R8P5_NOMLE_61853 and sp_Q7RTP6_MICA3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R8P5_G1R8P5_NOMLE_61853 and tr_A0A1D5Q5P4_A0A1D5Q5P4_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R8P5_G1R8P5_NOMLE_61853 and tr_A0A096NVY8_A0A096NVY8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R8P5_G1R8P5_NOMLE_61853 and tr_A0A0D9RP54_A0A0D9RP54_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R8P5_G1R8P5_NOMLE_61853 and tr_A0A2K5LG92_A0A2K5LG92_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R8P5_G1R8P5_NOMLE_61853 and tr_A0A2K6E3P3_A0A2K6E3P3_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R8P5_G1R8P5_NOMLE_61853 and tr_A0A2K6A5U2_A0A2K6A5U2_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R8P5_G1R8P5_NOMLE_61853 and tr_A0A2R9BKP9_A0A2R9BKP9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3HJS0_G3HJS0_CRIGR_10029 and tr_A0A2U3YUV4_A0A2U3YUV4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2I2ZV52_A0A2I2ZV52_GORGO_9595 and tr_F6VRJ5_F6VRJ5_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2ZV52_A0A2I2ZV52_GORGO_9595 and tr_A0A2K5N9D6_A0A2K5N9D6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I2ZV52_A0A2I2ZV52_GORGO_9595 and tr_A0A2R9AQJ0_A0A2R9AQJ0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QPP6_G3QPP6_GORGO_9595 and tr_A0A2J8QFZ1_A0A2J8QFZ1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QPP6_G3QPP6_GORGO_9595 and sp_Q9H254_SPTN4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QPP6_G3QPP6_GORGO_9595 and tr_F7H9V1_F7H9V1_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QPP6_G3QPP6_GORGO_9595 and tr_A0A0A0MV35_A0A0A0MV35_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QPP6_G3QPP6_GORGO_9595 and tr_A0A2K5NC20_A0A2K5NC20_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QPP6_G3QPP6_GORGO_9595 and tr_A0A2R9CD39_A0A2R9CD39_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R7J8_G3R7J8_GORGO_9595 and tr_A0A2I3S2C5_A0A2I3S2C5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R7J8_G3R7J8_GORGO_9595 and tr_F7FS44_F7FS44_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3R7J8_G3R7J8_GORGO_9595 and tr_A0A2I3M122_A0A2I3M122_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3R7J8_G3R7J8_GORGO_9595 and tr_A0A2K5P4S5_A0A2K5P4S5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R7J8_G3R7J8_GORGO_9595 and tr_A0A2K6CPD6_A0A2K6CPD6_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3R7J8_G3R7J8_GORGO_9595 and tr_A0A2K5XT52_A0A2K5XT52_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3R7J8_G3R7J8_GORGO_9595 and tr_A0A2R8ZIT5_A0A2R8ZIT5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_A0A2J8QB90_A0A2J8QB90_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and sp_Q9QWN8_SPTN2_RAT_10116 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_A0A287CYG2_A0A287CYG2_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_H0VPB1_H0VPB1_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and sp_O15020_SPTN2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_F6W8M4_F6W8M4_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_A0A287B3A4_A0A287B3A4_PIG_9823 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_G7PP83_G7PP83_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_A0A096MRI4_A0A096MRI4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_A0A1S3FJ96_A0A1S3FJ96_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_A0A1U7U5Q5_A0A1U7U5Q5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_A0A1U8BIF5_A0A1U8BIF5_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_A0A2K5MSA6_A0A2K5MSA6_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_A0A2K6C4H3_A0A2K6C4H3_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_A0A2K5ZBW9_A0A2K5ZBW9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3R7Q6_G3R7Q6_GORGO_9595 and tr_A0A2R9A0X1_A0A2R9A0X1_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8UQ29_A0A2J8UQ29_PONAB_9601 and sp_O94851_MICA2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8UQ29_A0A2J8UQ29_PONAB_9601 and tr_A0A2R9BD02_A0A2R9BD02_PANPA_9597 are exactly identical! WARNING: Sequences tr_F1Q0K3_F1Q0K3_CANLF_9615 and tr_A0A2U3WED3_A0A2U3WED3_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A2I3T9U0_A0A2I3T9U0_PANTR_9598 and tr_A0A2R8ZIG9_A0A2R8ZIG9_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QLM8_H2QLM8_PANTR_9598 and sp_Q8N3F8_MILK1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_K7CTI8_K7CTI8_PANTR_9598 and tr_A0A2R8ZU41_A0A2R8ZU41_PANPA_9597 are exactly identical! WARNING: Sequences tr_B0WDS4_B0WDS4_CULQU_7176 and tr_Q178J6_Q178J6_AEDAE_7159 are exactly identical! WARNING: Sequences tr_W5P9S1_W5P9S1_SHEEP_9940 and tr_A0A2Y9ECP3_A0A2Y9ECP3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3ZTY4_M3ZTY4_XIPMA_8083 and tr_A0A087XT77_A0A087XT77_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NF25_A0A158NF25_ATTCE_12957 and tr_A0A195AUX5_A0A195AUX5_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NJ82_A0A158NJ82_ATTCE_12957 and tr_F4WKP6_F4WKP6_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NJ82_A0A158NJ82_ATTCE_12957 and tr_A0A151WE51_A0A151WE51_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NJ82_A0A158NJ82_ATTCE_12957 and tr_A0A151JNA1_A0A151JNA1_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NJ82_A0A158NJ82_ATTCE_12957 and tr_A0A151I7F3_A0A151I7F3_9HYME_456900 are exactly identical! WARNING: Sequences tr_F7EAH0_F7EAH0_MACMU_9544 and tr_G7P3P2_G7P3P2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7EAH0_F7EAH0_MACMU_9544 and tr_A0A2K5LZI1_A0A2K5LZI1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7EAH0_F7EAH0_MACMU_9544 and tr_A0A2K6D6I7_A0A2K6D6I7_MACNE_9545 are exactly identical! WARNING: Sequences tr_E5S822_E5S822_TRISP_6334 and tr_A0A0V1D9G3_A0A0V1D9G3_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5S822_E5S822_TRISP_6334 and tr_A0A0V0VWR7_A0A0V0VWR7_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5S822_E5S822_TRISP_6334 and tr_A0A0V1A0K1_A0A0V1A0K1_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5S822_E5S822_TRISP_6334 and tr_A0A0V1PGW4_A0A0V1PGW4_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5S822_E5S822_TRISP_6334 and tr_A0A0V0U100_A0A0V0U100_9BILA_144512 are exactly identical! WARNING: Sequences sp_Q7PKQ5_ACTN_ANOGA_7165 and tr_A0A084W551_A0A084W551_ANOSI_74873 are exactly identical! WARNING: Sequences tr_Q7PSH4_Q7PSH4_ANOGA_7165 and tr_A0A084VUR5_A0A084VUR5_ANOSI_74873 are exactly identical! WARNING: Sequences tr_G3T8Q7_G3T8Q7_LOXAF_9785 and tr_G1LCQ9_G1LCQ9_AILME_9646 are exactly identical! WARNING: Sequences tr_G3T8Q7_G3T8Q7_LOXAF_9785 and tr_A0A2U4BYH1_A0A2U4BYH1_TURTR_9739 are exactly identical! WARNING: Sequences tr_G3T8Q7_G3T8Q7_LOXAF_9785 and tr_A0A2Y9QC80_A0A2Y9QC80_DELLE_9749 are exactly identical! WARNING: Sequences tr_G3T8Q7_G3T8Q7_LOXAF_9785 and tr_A0A384CW06_A0A384CW06_URSMA_29073 are exactly identical! WARNING: Sequences tr_G3T8Q7_G3T8Q7_LOXAF_9785 and tr_A0A384ARS4_A0A384ARS4_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3TCU9_G3TCU9_LOXAF_9785 and tr_F1MRD4_F1MRD4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G3TCU9_G3TCU9_LOXAF_9785 and tr_A0A2Y9DDZ1_A0A2Y9DDZ1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F6WKC6_F6WKC6_CALJA_9483 and tr_G7NWN5_G7NWN5_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A286ZJ09_A0A286ZJ09_PIG_9823 and tr_E1BLT3_E1BLT3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1M191_G1M191_AILME_9646 and tr_A0A2U3YPL5_A0A2U3YPL5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G7PQP9_G7PQP9_MACFA_9541 and tr_A0A2I3MTK1_A0A2I3MTK1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7PQP9_G7PQP9_MACFA_9541 and tr_A0A2K5P755_A0A2K5P755_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7PQP9_G7PQP9_MACFA_9541 and tr_A0A2K6CGD9_A0A2K6CGD9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7PQP9_G7PQP9_MACFA_9541 and tr_A0A2K6AI94_A0A2K6AI94_MANLE_9568 are exactly identical! WARNING: Sequences sp_F1MF74_MICA2_BOVIN_9913 and tr_H9GW33_H9GW33_BOVIN_9913 are exactly identical! WARNING: Sequences tr_L0P961_L0P961_PNEJ8_1209962 and tr_A0A0W4ZTP2_A0A0W4ZTP2_PNEJ7_1408657 are exactly identical! WARNING: Sequences tr_A0A096NJZ8_A0A096NJZ8_PAPAN_9555 and tr_A0A0D9R3J2_A0A0D9R3J2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A151MGD2_A0A151MGD2_ALLMI_8496 and tr_A0A3Q0GGR7_A0A3Q0GGR7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A194RRA3_A0A194RRA3_PAPMA_76193 and tr_A0A194PHG6_A0A194PHG6_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A0L7QV59_A0A0L7QV59_9HYME_597456 and tr_A0A2A3EMK6_A0A2A3EMK6_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A0V0RK57_A0A0V0RK57_9BILA_6336 and tr_A0A0V1CWE6_A0A0V1CWE6_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RK57_A0A0V0RK57_9BILA_6336 and tr_A0A0V0X125_A0A0V0X125_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RK57_A0A0V0RK57_9BILA_6336 and tr_A0A0V0VNJ7_A0A0V0VNJ7_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RK57_A0A0V0RK57_9BILA_6336 and tr_A0A0V1KXT2_A0A0V1KXT2_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0RK57_A0A0V0RK57_9BILA_6336 and tr_A0A0V0ZNF3_A0A0V0ZNF3_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RK57_A0A0V0RK57_9BILA_6336 and tr_A0A0V0XNX5_A0A0V0XNX5_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A0V0RK57_A0A0V0RK57_9BILA_6336 and tr_A0A0V1N8N3_A0A0V1N8N3_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0RK57_A0A0V0RK57_9BILA_6336 and tr_A0A0V1PGG1_A0A0V1PGG1_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RK57_A0A0V0RK57_9BILA_6336 and tr_A0A0V1HV45_A0A0V1HV45_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V0RK57_A0A0V0RK57_9BILA_6336 and tr_A0A0V0TZT7_A0A0V0TZT7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0RWV2_A0A0V0RWV2_9BILA_6336 and tr_A0A0V0V954_A0A0V0V954_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RWV2_A0A0V0RWV2_9BILA_6336 and tr_A0A0V0ZVU8_A0A0V0ZVU8_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RWV2_A0A0V0RWV2_9BILA_6336 and tr_A0A0V1PA38_A0A0V1PA38_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RWV2_A0A0V0RWV2_9BILA_6336 and tr_A0A0V0TM60_A0A0V0TM60_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0X058_A0A0V0X058_9BILA_92179 and tr_A0A0V1L6U6_A0A0V1L6U6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1MMA7_A0A0V1MMA7_9BILA_268474 and tr_A0A0V1HR16_A0A0V1HR16_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3A1P5_A0A1S3A1P5_ERIEU_9365 and tr_A0A1U7SJU2_A0A1U7SJU2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A1S3A1P5_A0A1S3A1P5_ERIEU_9365 and tr_A0A2Y9JAQ2_A0A2Y9JAQ2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A1S3S7M1_A0A1S3S7M1_SALSA_8030 and tr_A0A060XA04_A0A060XA04_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3SA45_A0A1S3SA45_SALSA_8030 and tr_A0A060WZ16_A0A060WZ16_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2A2J3V7_A0A2A2J3V7_9BILA_2018661 and tr_A0A2A2LIT2_A0A2A2LIT2_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2D0PUD8_A0A2D0PUD8_ICTPU_7998 and tr_A0A2D0PXJ2_A0A2D0PXJ2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0Q8N2_A0A2D0Q8N2_ICTPU_7998 and tr_A0A2D0QCE0_A0A2D0QCE0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S4H8_A0A2D0S4H8_ICTPU_7998 and tr_A0A2D0S4K9_A0A2D0S4K9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2P6MWR5_A0A2P6MWR5_9MYCE_1890364 and tr_A0A2P6NF96_A0A2P6NF96_9MYCE_1890364 are exactly identical! WARNING: Sequences tr_A0A2Y9P7W6_A0A2Y9P7W6_DELLE_9749 and tr_A0A2Y9TBT4_A0A2Y9TBT4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9TE32_A0A2Y9TE32_PHYCD_9755 and tr_A0A383Z7S6_A0A383Z7S6_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 167 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IY33/3_mltree/Q8IY33.raxml.reduced.phy Alignment comprises 1 partitions and 224 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 224 / 224 Gaps: 9.52 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IY33/3_mltree/Q8IY33.raxml.rba Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 224 / 17920 [00:00:00] Data distribution: max. searches per worker: 5 Starting ML tree search with 20 distinct starting trees [00:00:00 -378412.844458] Initial branch length optimization [00:00:05 -311952.339559] Model parameter optimization (eps = 10.000000) [00:00:54 -311233.681542] AUTODETECT spr round 1 (radius: 5) [00:04:07 -191298.578473] AUTODETECT spr round 2 (radius: 10) [00:07:20 -136384.632866] AUTODETECT spr round 3 (radius: 15) [00:10:57 -108224.683128] AUTODETECT spr round 4 (radius: 20) [00:15:09 -94554.213497] AUTODETECT spr round 5 (radius: 25) [00:20:21 -87278.838644] SPR radius for FAST iterations: 25 (autodetect) [00:20:21 -87278.838644] Model parameter optimization (eps = 3.000000) [00:20:46 -87109.037880] FAST spr round 1 (radius: 25) [00:24:23 -73475.740054] FAST spr round 2 (radius: 25) [00:27:07 -72536.187301] FAST spr round 3 (radius: 25) [00:29:35 -72479.193173] FAST spr round 4 (radius: 25) [00:31:49 -72469.327216] FAST spr round 5 (radius: 25) [00:33:54 -72468.558365] FAST spr round 6 (radius: 25) [00:35:56 -72468.557736] Model parameter optimization (eps = 1.000000) [00:36:13 -72467.413777] SLOW spr round 1 (radius: 5) [00:38:51 -72455.068365] SLOW spr round 2 (radius: 5) [00:41:29 -72451.318873] SLOW spr round 3 (radius: 5) [00:43:59 -72449.004997] SLOW spr round 4 (radius: 5) [00:46:28 -72449.004962] SLOW spr round 5 (radius: 10) [00:49:08 -72445.735405] SLOW spr round 6 (radius: 5) [00:52:21 -72443.240615] SLOW spr round 7 (radius: 5) [00:55:12 -72443.240607] SLOW spr round 8 (radius: 10) [00:57:57 -72443.240602] SLOW spr round 9 (radius: 15) [01:01:41 -72443.240602] SLOW spr round 10 (radius: 20) [01:07:09 -72443.240602] SLOW spr round 11 (radius: 25) [01:14:41 -72443.240602] Model parameter optimization (eps = 0.100000) [01:14:47] [worker #0] ML tree search #1, logLikelihood: -72443.191775 [01:14:47 -382730.249054] Initial branch length optimization [01:14:52 -313965.195600] Model parameter optimization (eps = 10.000000) [01:15:39 -313394.142240] AUTODETECT spr round 1 (radius: 5) [01:18:52 -194608.306370] AUTODETECT spr round 2 (radius: 10) [01:21:09] [worker #1] ML tree search #2, logLikelihood: -72425.150496 [01:22:11 -133955.131084] AUTODETECT spr round 3 (radius: 15) [01:25:38 -112029.704069] AUTODETECT spr round 4 (radius: 20) [01:29:13] [worker #2] ML tree search #3, logLikelihood: -72398.819659 [01:29:39 -99302.474563] AUTODETECT spr round 5 (radius: 25) [01:33:54 -94815.864073] SPR radius for FAST iterations: 25 (autodetect) [01:33:54 -94815.864073] Model parameter optimization (eps = 3.000000) [01:34:21 -94625.360937] FAST spr round 1 (radius: 25) [01:37:47 -76855.805224] FAST spr round 2 (radius: 25) [01:40:32 -73269.889825] FAST spr round 3 (radius: 25) [01:42:53 -72477.678393] FAST spr round 4 (radius: 25) [01:45:09 -72461.670685] FAST spr round 5 (radius: 25) [01:47:15 -72459.523581] FAST spr round 6 (radius: 25) [01:48:30] [worker #3] ML tree search #4, logLikelihood: -72415.813278 [01:49:17 -72459.240616] FAST spr round 7 (radius: 25) [01:51:17 -72459.240281] Model parameter optimization (eps = 1.000000) [01:51:31 -72455.498862] SLOW spr round 1 (radius: 5) [01:54:09 -72433.368420] SLOW spr round 2 (radius: 5) [01:56:46 -72431.876582] SLOW spr round 3 (radius: 5) [01:59:21 -72430.543516] SLOW spr round 4 (radius: 5) [02:01:51 -72430.543399] SLOW spr round 5 (radius: 10) [02:04:33 -72429.734472] SLOW spr round 6 (radius: 5) [02:07:48 -72426.360726] SLOW spr round 7 (radius: 5) [02:10:39 -72426.359300] SLOW spr round 8 (radius: 10) [02:13:27 -72426.359180] SLOW spr round 9 (radius: 15) [02:17:18 -72426.359167] SLOW spr round 10 (radius: 20) [02:22:52 -72426.359163] SLOW spr round 11 (radius: 25) [02:30:44 -72426.359162] Model parameter optimization (eps = 0.100000) [02:30:58] [worker #0] ML tree search #5, logLikelihood: -72426.062456 [02:30:58 -381852.719315] Initial branch length optimization [02:31:04 -315211.839534] Model parameter optimization (eps = 10.000000) [02:32:05 -314513.620401] AUTODETECT spr round 1 (radius: 5) [02:33:26] [worker #1] ML tree search #6, logLikelihood: -72428.292434 [02:35:16 -185653.644433] AUTODETECT spr round 2 (radius: 10) [02:37:54] [worker #2] ML tree search #7, logLikelihood: -72415.537926 [02:38:35 -137545.203439] AUTODETECT spr round 3 (radius: 15) [02:42:20 -107954.103803] AUTODETECT spr round 4 (radius: 20) [02:46:06 -93450.681295] AUTODETECT spr round 5 (radius: 25) [02:50:11 -89368.462833] SPR radius for FAST iterations: 25 (autodetect) [02:50:11 -89368.462833] Model parameter optimization (eps = 3.000000) [02:50:37 -89227.378801] FAST spr round 1 (radius: 25) [02:53:57 -73921.532996] FAST spr round 2 (radius: 25) [02:56:35 -72600.403916] FAST spr round 3 (radius: 25) [02:58:58 -72470.630436] FAST spr round 4 (radius: 25) [03:01:19 -72447.255524] FAST spr round 5 (radius: 25) [03:03:29 -72443.548957] FAST spr round 6 (radius: 25) [03:05:33 -72443.547356] Model parameter optimization (eps = 1.000000) [03:05:48 -72442.167942] SLOW spr round 1 (radius: 5) [03:08:28 -72421.678628] SLOW spr round 2 (radius: 5) [03:11:08 -72415.743875] SLOW spr round 3 (radius: 5) [03:13:39 -72415.742289] SLOW spr round 4 (radius: 10) [03:14:03] [worker #3] ML tree search #8, logLikelihood: -72421.452443 [03:16:20 -72414.608693] SLOW spr round 5 (radius: 5) [03:19:34 -72413.659624] SLOW spr round 6 (radius: 5) [03:22:26 -72413.659482] SLOW spr round 7 (radius: 10) [03:25:10 -72413.659481] SLOW spr round 8 (radius: 15) [03:28:56 -72413.659481] SLOW spr round 9 (radius: 20) [03:34:10 -72413.659481] SLOW spr round 10 (radius: 25) [03:39:29] [worker #1] ML tree search #10, logLikelihood: -72408.422339 [03:39:42] [worker #2] ML tree search #11, logLikelihood: -72427.192854 [03:41:08 -72413.659481] Model parameter optimization (eps = 0.100000) [03:41:14] [worker #0] ML tree search #9, logLikelihood: -72413.570841 [03:41:14 -377144.737235] Initial branch length optimization [03:41:20 -310746.505400] Model parameter optimization (eps = 10.000000) [03:42:08 -310147.670771] AUTODETECT spr round 1 (radius: 5) [03:45:22 -193163.211041] AUTODETECT spr round 2 (radius: 10) [03:48:38 -141346.894633] AUTODETECT spr round 3 (radius: 15) [03:52:12 -109595.370445] AUTODETECT spr round 4 (radius: 20) [03:56:21 -96039.118914] AUTODETECT spr round 5 (radius: 25) [04:01:13 -89167.605992] SPR radius for FAST iterations: 25 (autodetect) [04:01:13 -89167.605992] Model parameter optimization (eps = 3.000000) [04:01:43 -89003.971176] FAST spr round 1 (radius: 25) [04:05:04 -73320.446469] FAST spr round 2 (radius: 25) [04:07:43 -72609.697473] FAST spr round 3 (radius: 25) [04:10:06 -72507.584450] FAST spr round 4 (radius: 25) [04:12:23 -72487.650008] FAST spr round 5 (radius: 25) [04:14:34 -72484.003255] FAST spr round 6 (radius: 25) [04:16:40 -72484.001572] Model parameter optimization (eps = 1.000000) [04:17:03 -72462.497731] SLOW spr round 1 (radius: 5) [04:19:43 -72444.104205] SLOW spr round 2 (radius: 5) [04:22:21 -72437.450462] SLOW spr round 3 (radius: 5) [04:24:19] [worker #3] ML tree search #12, logLikelihood: -72424.677364 [04:24:53 -72437.450187] SLOW spr round 4 (radius: 10) [04:27:35 -72436.521540] SLOW spr round 5 (radius: 5) [04:30:50 -72435.212113] SLOW spr round 6 (radius: 5) [04:33:42 -72435.211999] SLOW spr round 7 (radius: 10) [04:36:30 -72435.211981] SLOW spr round 8 (radius: 15) [04:40:17 -72435.211971] SLOW spr round 9 (radius: 20) [04:45:41 -72435.211965] SLOW spr round 10 (radius: 25) [04:46:38] [worker #1] ML tree search #14, logLikelihood: -72432.869013 [04:52:56 -72435.211961] Model parameter optimization (eps = 0.100000) [04:53:01] [worker #0] ML tree search #13, logLikelihood: -72435.198183 [04:53:01 -378480.430789] Initial branch length optimization [04:53:07 -313952.330749] Model parameter optimization (eps = 10.000000) [04:54:03 -313376.231277] AUTODETECT spr round 1 (radius: 5) [04:57:18 -193611.748947] AUTODETECT spr round 2 (radius: 10) [04:58:50] [worker #2] ML tree search #15, logLikelihood: -72413.450763 [05:00:34 -144716.124365] AUTODETECT spr round 3 (radius: 15) [05:04:06 -121434.002571] AUTODETECT spr round 4 (radius: 20) [05:08:11 -106222.903270] AUTODETECT spr round 5 (radius: 25) [05:12:37 -100354.710255] SPR radius for FAST iterations: 25 (autodetect) [05:12:38 -100354.710255] Model parameter optimization (eps = 3.000000) [05:13:09 -100224.338709] FAST spr round 1 (radius: 25) [05:17:01 -74928.570949] FAST spr round 2 (radius: 25) [05:19:51 -72600.366978] FAST spr round 3 (radius: 25) [05:22:20 -72486.117580] FAST spr round 4 (radius: 25) [05:24:36 -72478.313763] FAST spr round 5 (radius: 25) [05:26:45 -72478.312700] Model parameter optimization (eps = 1.000000) [05:27:05 -72465.032291] SLOW spr round 1 (radius: 5) [05:29:48 -72444.840396] SLOW spr round 2 (radius: 5) [05:32:28 -72439.678129] SLOW spr round 3 (radius: 5) [05:35:01 -72439.602604] SLOW spr round 4 (radius: 10) [05:37:43 -72437.729541] SLOW spr round 5 (radius: 5) [05:39:47] [worker #3] ML tree search #16, logLikelihood: -72432.445358 [05:40:56 -72433.368226] SLOW spr round 6 (radius: 5) [05:43:46 -72433.368190] SLOW spr round 7 (radius: 10) [05:45:35] [worker #1] ML tree search #18, logLikelihood: -72425.185413 [05:46:33 -72433.368188] SLOW spr round 8 (radius: 15) [05:50:20 -72433.346299] SLOW spr round 9 (radius: 20) [05:55:33 -72433.345563] SLOW spr round 10 (radius: 25) [06:02:42 -72433.345544] Model parameter optimization (eps = 0.100000) [06:03:03] [worker #0] ML tree search #17, logLikelihood: -72432.325113 [06:09:12] [worker #2] ML tree search #19, logLikelihood: -72413.160407 [06:44:50] [worker #3] ML tree search #20, logLikelihood: -72435.295365 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.216357,0.449147) (0.115161,0.488741) (0.360794,0.851133) (0.307688,1.753258) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -72398.819659 AIC score: 148807.639319 / AICc score: 8192867.639319 / BIC score: 155647.989653 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=224). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IY33/3_mltree/Q8IY33.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IY33/3_mltree/Q8IY33.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IY33/3_mltree/Q8IY33.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IY33/3_mltree/Q8IY33.raxml.log Analysis started: 30-Jun-2021 17:50:15 / finished: 01-Jul-2021 00:35:06 Elapsed time: 24291.029 seconds Consumed energy: 2020.571 Wh (= 10 km in an electric car, or 51 km with an e-scooter!)