RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 05-Jul-2021 19:53:10 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IVV2/2_msa/Q8IVV2_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IVV2/3_mltree/Q8IVV2 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IVV2/2_msa/Q8IVV2_trimmed_msa.fasta [00:00:00] Loaded alignment with 973 taxa and 97 sites WARNING: Sequences tr_E2A4F5_E2A4F5_CAMFO_104421 and tr_A0A158NF67_A0A158NF67_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2A4F5_E2A4F5_CAMFO_104421 and tr_F4WVT8_F4WVT8_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2A4F5_E2A4F5_CAMFO_104421 and tr_A0A151XIE9_A0A151XIE9_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2A4F5_E2A4F5_CAMFO_104421 and tr_A0A195E9C0_A0A195E9C0_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2A4F5_E2A4F5_CAMFO_104421 and tr_A0A151IMU4_A0A151IMU4_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1L1RPK6_A0A1L1RPK6_CHICK_9031 and tr_G1NKW1_G1NKW1_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1L1RPK6_A0A1L1RPK6_CHICK_9031 and tr_A0A226MT69_A0A226MT69_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1L1RPK6_A0A1L1RPK6_CHICK_9031 and tr_A0A226PLQ1_A0A226PLQ1_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1N838_F1N838_CHICK_9031 and tr_G1N2X4_G1N2X4_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1N838_F1N838_CHICK_9031 and tr_U3IEZ3_U3IEZ3_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1N838_F1N838_CHICK_9031 and tr_A0A226NM72_A0A226NM72_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1N838_F1N838_CHICK_9031 and tr_A0A226PP72_A0A226PP72_COLVI_9014 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_M3YIK3_M3YIK3_MUSPF_9669 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_G1S3E1_G1S3E1_NOMLE_61853 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_G1PKY4_G1PKY4_MYOLU_59463 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_G3HPG7_G3HPG7_CRIGR_10029 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_G3RGD9_G3RGD9_GORGO_9595 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_H2NGX4_H2NGX4_PONAB_9601 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_F1PQG0_F1PQG0_CANLF_9615 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_H2Q358_H2Q358_PANTR_9598 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_W5QDT9_W5QDT9_SHEEP_9940 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_M0R5A9_M0R5A9_RAT_10116 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_H0WZI9_H0WZI9_OTOGA_30611 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and sp_Q6ZUT9_DEN5B_HUMAN_9606 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_F7DNZ4_F7DNZ4_MACMU_9544 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A2R8M697_A0A2R8M697_CALJA_9483 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_G7PHK2_G7PHK2_MACFA_9541 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_F1MQ87_F1MQ87_BOVIN_9913 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_L5KKF7_L5KKF7_PTEAL_9402 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A2I2V1L4_A0A2I2V1L4_FELCA_9685 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A0D9R4Z9_A0A0D9R4Z9_CHLSB_60711 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A3Q0CV47_A0A3Q0CV47_MESAU_10036 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A2K5NUU5_A0A2K5NUU5_CERAT_9531 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A2K6CF82_A0A2K6CF82_MACNE_9545 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A2K5Z4K3_A0A2K5Z4K3_MANLE_9568 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A2R8Z721_A0A2R8Z721_PANPA_9597 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A2U4BD77_A0A2U4BD77_TURTR_9739 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A2U3ZMY7_A0A2U3ZMY7_ODORO_9708 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A2U3XFW4_A0A2U3XFW4_LEPWE_9713 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A2Y9IHS7_A0A2Y9IHS7_ENHLU_391180 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A2Y9NVQ8_A0A2Y9NVQ8_DELLE_9749 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A2Y9F9I7_A0A2Y9F9I7_PHYCD_9755 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A384BGK6_A0A384BGK6_URSMA_29073 are exactly identical! WARNING: Sequences sp_A2RSQ0_DEN5B_MOUSE_10090 and tr_A0A383ZKV8_A0A383ZKV8_BALAS_310752 are exactly identical! WARNING: Sequences sp_C8YR32_LOXH1_MOUSE_10090 and tr_J9P0F7_J9P0F7_CANLF_9615 are exactly identical! WARNING: Sequences sp_C8YR32_LOXH1_MOUSE_10090 and tr_D4A3A1_D4A3A1_RAT_10116 are exactly identical! WARNING: Sequences sp_C8YR32_LOXH1_MOUSE_10090 and tr_I3MZW8_I3MZW8_ICTTR_43179 are exactly identical! WARNING: Sequences sp_C8YR32_LOXH1_MOUSE_10090 and tr_H0VFH5_H0VFH5_CAVPO_10141 are exactly identical! WARNING: Sequences sp_C8YR32_LOXH1_MOUSE_10090 and tr_G3T1Y4_G3T1Y4_LOXAF_9785 are exactly identical! WARNING: Sequences sp_C8YR32_LOXH1_MOUSE_10090 and tr_I3LDH6_I3LDH6_PIG_9823 are exactly identical! WARNING: Sequences sp_C8YR32_LOXH1_MOUSE_10090 and tr_L5K573_L5K573_PTEAL_9402 are exactly identical! WARNING: Sequences sp_C8YR32_LOXH1_MOUSE_10090 and tr_A0A2I2UQU3_A0A2I2UQU3_FELCA_9685 are exactly identical! WARNING: Sequences sp_C8YR32_LOXH1_MOUSE_10090 and tr_A0A091DTF5_A0A091DTF5_FUKDA_885580 are exactly identical! WARNING: Sequences sp_C8YR32_LOXH1_MOUSE_10090 and tr_A0A1U7QZQ2_A0A1U7QZQ2_MESAU_10036 are exactly identical! WARNING: Sequences sp_C8YR32_LOXH1_MOUSE_10090 and tr_A0A2U3WIG5_A0A2U3WIG5_ODORO_9708 are exactly identical! WARNING: Sequences sp_C8YR32_LOXH1_MOUSE_10090 and tr_A0A2Y9TGX2_A0A2Y9TGX2_PHYCD_9755 are exactly identical! WARNING: Sequences sp_O08852_PKD1_MOUSE_10090 and tr_F1MAD3_F1MAD3_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XP77_M3XP77_MUSPF_9669 and tr_A0A2Y9ISG8_A0A2Y9ISG8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A3B3IFV1_A0A3B3IFV1_ORYLA_8090 and sp_E7FKV8_PK1L1_ORYLA_8090 are exactly identical! WARNING: Sequences tr_A0A2I3GH02_A0A2I3GH02_NOMLE_61853 and tr_G3SGV7_G3SGV7_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GH02_A0A2I3GH02_NOMLE_61853 and tr_H2NWA2_H2NWA2_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GH02_A0A2I3GH02_NOMLE_61853 and tr_A0A2I3S106_A0A2I3S106_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GH02_A0A2I3GH02_NOMLE_61853 and sp_Q8IVV2_LOXH1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GH02_A0A2I3GH02_NOMLE_61853 and tr_A0A0D9RZF7_A0A0D9RZF7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3GH02_A0A2I3GH02_NOMLE_61853 and tr_A0A2R8ZMI2_A0A2R8ZMI2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1R164_G1R164_NOMLE_61853 and tr_G3QY83_G3QY83_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R164_G1R164_NOMLE_61853 and tr_H2NRE2_H2NRE2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R164_G1R164_NOMLE_61853 and tr_A0A2I3RJZ3_A0A2I3RJZ3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R164_G1R164_NOMLE_61853 and tr_A0A2R9A437_A0A2R9A437_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1S0R8_G1S0R8_NOMLE_61853 and tr_H2QLW4_H2QLW4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S0R8_G1S0R8_NOMLE_61853 and sp_Q9NTG1_PKDRE_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S0R8_G1S0R8_NOMLE_61853 and tr_A0A2R8ZM21_A0A2R8ZM21_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3HBQ9_G3HBQ9_CRIGR_10029 and tr_A0A1U8CF70_A0A1U8CF70_MESAU_10036 are exactly identical! WARNING: Sequences tr_C3Y8S8_C3Y8S8_BRAFL_7739 and tr_C3YC33_C3YC33_BRAFL_7739 are exactly identical! WARNING: Sequences tr_C3YTF7_C3YTF7_BRAFL_7739 and tr_C3YTG0_C3YTG0_BRAFL_7739 are exactly identical! WARNING: Sequences tr_C3YX04_C3YX04_BRAFL_7739 and tr_C3YX06_C3YX06_BRAFL_7739 are exactly identical! WARNING: Sequences tr_C3YZG6_C3YZG6_BRAFL_7739 and tr_C3YZH9_C3YZH9_BRAFL_7739 are exactly identical! WARNING: Sequences tr_G1N4Q0_G1N4Q0_MELGA_9103 and tr_A0A226N557_A0A226N557_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1N4Q0_G1N4Q0_MELGA_9103 and tr_A0A226PIU5_A0A226PIU5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2I3RI50_A0A2I3RI50_PANTR_9598 and tr_A0A2I3RVM5_A0A2I3RVM5_PANTR_9598 are exactly identical! WARNING: Sequences tr_F6YV18_F6YV18_MONDO_13616 and tr_G3WU86_G3WU86_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5Q7Y6_W5Q7Y6_SHEEP_9940 and tr_E1BC86_E1BC86_BOVIN_9913 are exactly identical! WARNING: Sequences tr_H2V5X9_H2V5X9_TAKRU_31033 and tr_H3BZ63_H3BZ63_TETNG_99883 are exactly identical! WARNING: Sequences sp_Q8TDX9_PK1L1_HUMAN_9606 and tr_A0A2R9B9Q5_A0A2R9B9Q5_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6VDN0_F6VDN0_MACMU_9544 and tr_A0A096NSG6_A0A096NSG6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6VDN0_F6VDN0_MACMU_9544 and tr_A0A2K6BDQ2_A0A2K6BDQ2_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H9L7_F7H9L7_MACMU_9544 and tr_G7PWQ6_G7PWQ6_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H9L7_F7H9L7_MACMU_9544 and tr_A0A096MYP8_A0A096MYP8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7H9L7_F7H9L7_MACMU_9544 and tr_A0A2K5MN27_A0A2K5MN27_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7H9L7_F7H9L7_MACMU_9544 and tr_A0A2K6CCJ0_A0A2K6CCJ0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H9L7_F7H9L7_MACMU_9544 and tr_A0A2K5ZXB2_A0A2K5ZXB2_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HI29_F7HI29_MACMU_9544 and tr_A0A096NL12_A0A096NL12_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HI29_F7HI29_MACMU_9544 and tr_A0A2K5LYC7_A0A2K5LYC7_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HI29_F7HI29_MACMU_9544 and tr_A0A2K6DWP2_A0A2K6DWP2_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HI29_F7HI29_MACMU_9544 and tr_A0A2K5XLP8_A0A2K5XLP8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G5BLL9_G5BLL9_HETGA_10181 and tr_A0A091DLC1_A0A091DLC1_FUKDA_885580 are exactly identical! WARNING: Sequences tr_E5S2Z3_E5S2Z3_TRISP_6334 and tr_A0A0V0S4B7_A0A0V0S4B7_9BILA_6336 are exactly identical! WARNING: Sequences tr_W4Y9G7_W4Y9G7_STRPU_7668 and tr_W4Z2Y5_W4Z2Y5_STRPU_7668 are exactly identical! WARNING: Sequences tr_H0ZD58_H0ZD58_TAEGU_59729 and tr_U3JE07_U3JE07_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZD58_H0ZD58_TAEGU_59729 and tr_U3I3Q1_U3I3Q1_ANAPL_8839 are exactly identical! WARNING: Sequences tr_H0ZD58_H0ZD58_TAEGU_59729 and tr_A0A151MBY8_A0A151MBY8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_H0ZD58_H0ZD58_TAEGU_59729 and tr_A0A093QH10_A0A093QH10_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZD58_H0ZD58_TAEGU_59729 and tr_A0A091UU51_A0A091UU51_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0ZD58_H0ZD58_TAEGU_59729 and tr_A0A087RK93_A0A087RK93_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZD58_H0ZD58_TAEGU_59729 and tr_A0A091FS78_A0A091FS78_9AVES_55661 are exactly identical! WARNING: Sequences tr_H0ZD58_H0ZD58_TAEGU_59729 and tr_A0A1V4JNY4_A0A1V4JNY4_PATFA_372326 are exactly identical! WARNING: Sequences tr_H0ZD58_H0ZD58_TAEGU_59729 and tr_A0A218URE7_A0A218URE7_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZMK3_H0ZMK3_TAEGU_59729 and tr_U3K319_U3K319_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZMK3_H0ZMK3_TAEGU_59729 and tr_A0A091FMI3_A0A091FMI3_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZMK3_H0ZMK3_TAEGU_59729 and tr_A0A218UGR3_A0A218UGR3_9PASE_299123 are exactly identical! WARNING: Sequences tr_B3RLM0_B3RLM0_TRIAD_10228 and tr_A0A369S522_A0A369S522_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3RPM8_B3RPM8_TRIAD_10228 and tr_A0A369SFI0_A0A369SFI0_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3S1S4_B3S1S4_TRIAD_10228 and tr_A0A369SJI0_A0A369SJI0_9METZ_287889 are exactly identical! WARNING: Sequences tr_G7PFY6_G7PFY6_MACFA_9541 and tr_A0A2I3NAU6_A0A2I3NAU6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_U3JLR8_U3JLR8_FICAL_59894 and tr_A0A091ELW9_A0A091ELW9_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3K2M3_U3K2M3_FICAL_59894 and tr_A0A218V7N6_A0A218V7N6_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3IGB6_U3IGB6_ANAPL_8839 and tr_A0A151NIC5_A0A151NIC5_ALLMI_8496 are exactly identical! WARNING: Sequences tr_U3IGB6_U3IGB6_ANAPL_8839 and tr_A0A0Q3PAG9_A0A0Q3PAG9_AMAAE_12930 are exactly identical! WARNING: Sequences tr_U3IGB6_U3IGB6_ANAPL_8839 and tr_A0A091ISA2_A0A091ISA2_EGRGA_188379 are exactly identical! WARNING: Sequences tr_U3IGB6_U3IGB6_ANAPL_8839 and tr_A0A093SMR3_A0A093SMR3_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3IGB6_U3IGB6_ANAPL_8839 and tr_A0A091VX20_A0A091VX20_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3IGB6_U3IGB6_ANAPL_8839 and tr_A0A087RJF5_A0A087RJF5_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3IGB6_U3IGB6_ANAPL_8839 and tr_A0A091XU18_A0A091XU18_OPIHO_30419 are exactly identical! WARNING: Sequences tr_U3IGB6_U3IGB6_ANAPL_8839 and tr_A0A091FX57_A0A091FX57_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3IGB6_U3IGB6_ANAPL_8839 and tr_A0A0A0ADZ5_A0A0A0ADZ5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_U3IGB6_U3IGB6_ANAPL_8839 and tr_A0A2I0MKY1_A0A2I0MKY1_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3IGB6_U3IGB6_ANAPL_8839 and tr_A0A3Q0GZC3_A0A3Q0GZC3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_U3IGB6_U3IGB6_ANAPL_8839 and tr_A0A1V4K833_A0A1V4K833_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A044QZK3_A0A044QZK3_ONCVO_6282 and tr_A0A183H0M4_A0A183H0M4_9BILA_387005 are exactly identical! WARNING: Sequences tr_A0A151MWC8_A0A151MWC8_ALLMI_8496 and tr_A0A1U7SBZ7_A0A1U7SBZ7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N2T3_A0A151N2T3_ALLMI_8496 and tr_A0A3Q0G468_A0A3Q0G468_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NMH7_A0A151NMH7_ALLMI_8496 and tr_A0A3Q0GXE9_A0A3Q0GXE9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151P6S6_A0A151P6S6_ALLMI_8496 and tr_A0A3Q0HHD5_A0A3Q0HHD5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091K0S2_A0A091K0S2_EGRGA_188379 and tr_A0A087RG73_A0A087RG73_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091K0S2_A0A091K0S2_EGRGA_188379 and tr_A0A099ZXZ6_A0A099ZXZ6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0M0L9_A0A2I0M0L9_COLLI_8932 and tr_A0A1V4KR90_A0A1V4KR90_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1CPB2_A0A0V1CPB2_TRIBR_45882 and tr_A0A0V0WHK9_A0A0V0WHK9_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CPB2_A0A0V1CPB2_TRIBR_45882 and tr_A0A0V0VI52_A0A0V0VI52_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CPB2_A0A0V1CPB2_TRIBR_45882 and tr_A0A0V1KWL0_A0A0V1KWL0_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CPB2_A0A0V1CPB2_TRIBR_45882 and tr_A0A0V0ZER1_A0A0V0ZER1_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1CPB2_A0A0V1CPB2_TRIBR_45882 and tr_A0A0V1NYN1_A0A0V1NYN1_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CPB2_A0A0V1CPB2_TRIBR_45882 and tr_A0A0V0TMF5_A0A0V0TMF5_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1EDJ1_A0A0V1EDJ1_TRIPS_6337 and tr_A0A0V1HHV3_A0A0V1HHV3_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3H1U3_A0A1S3H1U3_LINUN_7574 and tr_A0A1S3H2D0_A0A1S3H2D0_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3H1U3_A0A1S3H1U3_LINUN_7574 and tr_A0A1S3H3P7_A0A1S3H3P7_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3H1U3_A0A1S3H1U3_LINUN_7574 and tr_A0A1S3H3Q3_A0A1S3H3Q3_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3HIC2_A0A1S3HIC2_LINUN_7574 and tr_A0A1S3I5A1_A0A1S3I5A1_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3IS49_A0A1S3IS49_LINUN_7574 and tr_A0A1S3J0J3_A0A1S3J0J3_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3K257_A0A1S3K257_LINUN_7574 and tr_A0A1S3K2T6_A0A1S3K2T6_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3PSP9_A0A1S3PSP9_SALSA_8030 and tr_A0A060XKT9_A0A060XKT9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3QFV3_A0A1S3QFV3_SALSA_8030 and tr_A0A1S3QH74_A0A1S3QH74_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3SGJ8_A0A1S3SGJ8_SALSA_8030 and tr_A0A060XNM4_A0A060XNM4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0SEU3_A0A2D0SEU3_ICTPU_7998 and tr_A0A2D0SEU8_A0A2D0SEU8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SEU3_A0A2D0SEU3_ICTPU_7998 and tr_A0A2D0SFG9_A0A2D0SFG9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SEU3_A0A2D0SEU3_ICTPU_7998 and tr_A0A2D0SFH5_A0A2D0SFH5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A250XPJ7_A0A250XPJ7_9CHLO_1157962 and tr_A0A250XQM1_A0A250XQM1_9CHLO_1157962 are exactly identical! WARNING: Sequences tr_A0A2U4BFD8_A0A2U4BFD8_TURTR_9739 and tr_A0A2Y9MEN9_A0A2Y9MEN9_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9PYH5_A0A2Y9PYH5_DELLE_9749 and tr_A0A2Y9SLE8_A0A2Y9SLE8_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 158 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IVV2/3_mltree/Q8IVV2.raxml.reduced.phy Alignment comprises 1 partitions and 97 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 97 / 97 Gaps: 4.99 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IVV2/3_mltree/Q8IVV2.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 973 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 97 / 7760 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -186299.167584] Initial branch length optimization [00:00:01 -158974.559928] Model parameter optimization (eps = 10.000000) [00:00:25 -157800.418205] AUTODETECT spr round 1 (radius: 5) [00:01:55 -111684.620442] AUTODETECT spr round 2 (radius: 10) [00:03:37 -85594.275001] AUTODETECT spr round 3 (radius: 15) [00:05:24 -76410.915604] AUTODETECT spr round 4 (radius: 20) [00:07:36 -68421.407587] AUTODETECT spr round 5 (radius: 25) [00:10:07 -66098.935113] SPR radius for FAST iterations: 25 (autodetect) [00:10:07 -66098.935113] Model parameter optimization (eps = 3.000000) [00:10:22 -66039.040080] FAST spr round 1 (radius: 25) [00:12:29 -60111.190685] FAST spr round 2 (radius: 25) [00:14:09 -59721.227205] FAST spr round 3 (radius: 25) [00:15:37 -59529.220716] FAST spr round 4 (radius: 25) [00:16:55 -59514.675666] FAST spr round 5 (radius: 25) [00:18:07 -59510.722599] FAST spr round 6 (radius: 25) [00:19:17 -59509.841386] FAST spr round 7 (radius: 25) [00:20:26 -59509.841032] Model parameter optimization (eps = 1.000000) [00:20:35 -59505.839284] SLOW spr round 1 (radius: 5) [00:22:02 -59490.870098] SLOW spr round 2 (radius: 5) [00:23:28 -59488.270123] SLOW spr round 3 (radius: 5) [00:24:51 -59488.160560] SLOW spr round 4 (radius: 5) [00:26:12 -59488.160201] SLOW spr round 5 (radius: 10) [00:27:36 -59487.199849] SLOW spr round 6 (radius: 5) [00:29:17 -59487.199818] SLOW spr round 7 (radius: 10) [00:30:49 -59487.199808] SLOW spr round 8 (radius: 15) [00:32:51 -59484.207936] SLOW spr round 9 (radius: 5) [00:34:38 -59483.348424] SLOW spr round 10 (radius: 5) [00:36:13 -59483.348123] SLOW spr round 11 (radius: 10) [00:37:41 -59479.531340] SLOW spr round 12 (radius: 5) [00:39:21 -59479.209714] SLOW spr round 13 (radius: 5) [00:40:51 -59479.209248] SLOW spr round 14 (radius: 10) [00:42:20 -59476.532939] SLOW spr round 15 (radius: 5) [00:43:58 -59476.260048] SLOW spr round 16 (radius: 5) [00:45:32 -59475.854875] SLOW spr round 17 (radius: 5) [00:46:59 -59475.853421] SLOW spr round 18 (radius: 10) [00:48:25 -59475.303413] SLOW spr round 19 (radius: 5) [00:50:06 -59475.296611] SLOW spr round 20 (radius: 10) [00:51:05] [worker #1] ML tree search #2, logLikelihood: -59511.717219 [00:51:38 -59475.296538] SLOW spr round 21 (radius: 15) [00:53:40 -59475.131091] SLOW spr round 22 (radius: 5) [00:55:24 -59475.129471] SLOW spr round 23 (radius: 10) [00:56:59 -59475.129034] SLOW spr round 24 (radius: 15) [00:58:59 -59475.128918] SLOW spr round 25 (radius: 20) [01:02:02 -59475.128886] SLOW spr round 26 (radius: 25) [01:05:45 -59475.069349] Model parameter optimization (eps = 0.100000) [01:05:49] [worker #0] ML tree search #1, logLikelihood: -59475.022981 [01:05:49 -185469.959108] Initial branch length optimization [01:05:51 -158584.554308] Model parameter optimization (eps = 10.000000) [01:06:18 -157555.240126] AUTODETECT spr round 1 (radius: 5) [01:07:47 -111599.911523] AUTODETECT spr round 2 (radius: 10) [01:09:31 -87084.873656] AUTODETECT spr round 3 (radius: 15) [01:11:18 -74653.576592] AUTODETECT spr round 4 (radius: 20) [01:13:17 -69077.184946] AUTODETECT spr round 5 (radius: 25) [01:15:42 -67961.512353] SPR radius for FAST iterations: 25 (autodetect) [01:15:42 -67961.512353] Model parameter optimization (eps = 3.000000) [01:15:59 -67920.773647] FAST spr round 1 (radius: 25) [01:18:25 -60393.786021] FAST spr round 2 (radius: 25) [01:20:17 -59662.217323] FAST spr round 3 (radius: 25) [01:21:56 -59543.040083] FAST spr round 4 (radius: 25) [01:23:25 -59528.548296] FAST spr round 5 (radius: 25) [01:24:47 -59521.848000] FAST spr round 6 (radius: 25) [01:26:05 -59520.440584] FAST spr round 7 (radius: 25) [01:27:23 -59520.177264] FAST spr round 8 (radius: 25) [01:28:40 -59520.176835] Model parameter optimization (eps = 1.000000) [01:28:55 -59510.005465] SLOW spr round 1 (radius: 5) [01:30:29 -59492.363081] SLOW spr round 2 (radius: 5) [01:32:09 -59491.511900] SLOW spr round 3 (radius: 5) [01:33:39 -59491.292050] SLOW spr round 4 (radius: 5) [01:35:11 -59491.291239] SLOW spr round 5 (radius: 10) [01:36:46 -59488.899616] SLOW spr round 6 (radius: 5) [01:38:37 -59488.299187] SLOW spr round 7 (radius: 5) [01:40:17 -59488.298817] SLOW spr round 8 (radius: 10) [01:41:55 -59485.169637] SLOW spr round 9 (radius: 5) [01:43:44 -59484.902574] SLOW spr round 10 (radius: 5) [01:45:23 -59484.902328] SLOW spr round 11 (radius: 10) [01:47:04 -59484.902223] SLOW spr round 12 (radius: 15) [01:49:26 -59481.684897] SLOW spr round 13 (radius: 5) [01:51:27 -59480.217954] SLOW spr round 14 (radius: 5) [01:53:12 -59480.031361] SLOW spr round 15 (radius: 5) [01:54:52 -59480.031298] SLOW spr round 16 (radius: 10) [01:56:27 -59480.031295] SLOW spr round 17 (radius: 15) [01:58:49 -59480.031293] SLOW spr round 18 (radius: 20) [02:02:06 -59476.569262] SLOW spr round 19 (radius: 5) [02:04:01 -59476.566655] SLOW spr round 20 (radius: 10) [02:05:48 -59476.566527] SLOW spr round 21 (radius: 15) [02:08:03 -59476.566519] SLOW spr round 22 (radius: 20) [02:11:28 -59476.566516] SLOW spr round 23 (radius: 25) [02:15:38 -59476.566514] Model parameter optimization (eps = 0.100000) [02:15:43] [worker #0] ML tree search #3, logLikelihood: -59476.511898 [02:15:43 -186453.313326] Initial branch length optimization [02:15:45 -159087.620938] Model parameter optimization (eps = 10.000000) [02:16:04 -157954.851821] AUTODETECT spr round 1 (radius: 5) [02:17:39 -110463.705175] AUTODETECT spr round 2 (radius: 10) [02:19:26 -82543.529342] AUTODETECT spr round 3 (radius: 15) [02:19:42] [worker #1] ML tree search #4, logLikelihood: -59619.842623 [02:21:17 -73000.929633] AUTODETECT spr round 4 (radius: 20) [02:23:16 -69354.412855] AUTODETECT spr round 5 (radius: 25) [02:25:44 -67002.015253] SPR radius for FAST iterations: 25 (autodetect) [02:25:44 -67002.015253] Model parameter optimization (eps = 3.000000) [02:26:00 -66949.806059] FAST spr round 1 (radius: 25) [02:28:19 -60023.688003] FAST spr round 2 (radius: 25) [02:30:07 -59572.114466] FAST spr round 3 (radius: 25) [02:31:38 -59510.353147] FAST spr round 4 (radius: 25) [02:32:59 -59508.082261] FAST spr round 5 (radius: 25) [02:34:17 -59508.082190] Model parameter optimization (eps = 1.000000) [02:34:26 -59499.600958] SLOW spr round 1 (radius: 5) [02:36:01 -59485.161277] SLOW spr round 2 (radius: 5) [02:37:37 -59484.311649] SLOW spr round 3 (radius: 5) [02:39:11 -59484.029212] SLOW spr round 4 (radius: 5) [02:40:43 -59484.028487] SLOW spr round 5 (radius: 10) [02:42:18 -59483.977966] SLOW spr round 6 (radius: 15) [02:44:36 -59482.873207] SLOW spr round 7 (radius: 5) [02:46:32 -59482.870444] SLOW spr round 8 (radius: 10) [02:48:17 -59482.869923] SLOW spr round 9 (radius: 15) [02:50:28 -59482.869812] SLOW spr round 10 (radius: 20) [02:53:45 -59480.383932] SLOW spr round 11 (radius: 5) [02:55:44 -59479.734861] SLOW spr round 12 (radius: 5) [02:57:28 -59479.734195] SLOW spr round 13 (radius: 10) [02:59:07 -59479.734089] SLOW spr round 14 (radius: 15) [03:01:21 -59479.734066] SLOW spr round 15 (radius: 20) [03:04:38 -59479.734060] SLOW spr round 16 (radius: 25) [03:08:41 -59479.734059] Model parameter optimization (eps = 0.100000) [03:08:45] [worker #0] ML tree search #5, logLikelihood: -59479.713163 [03:08:45 -185781.619012] Initial branch length optimization [03:08:47 -157882.014954] Model parameter optimization (eps = 10.000000) [03:09:27 -156692.492008] AUTODETECT spr round 1 (radius: 5) [03:11:10 -110192.098340] AUTODETECT spr round 2 (radius: 10) [03:12:59 -84003.345888] AUTODETECT spr round 3 (radius: 15) [03:14:52 -71213.670449] AUTODETECT spr round 4 (radius: 20) [03:17:05 -67765.953217] AUTODETECT spr round 5 (radius: 25) [03:19:45 -66249.939738] SPR radius for FAST iterations: 25 (autodetect) [03:19:45 -66249.939738] Model parameter optimization (eps = 3.000000) [03:19:58 -66152.021270] FAST spr round 1 (radius: 25) [03:22:10 -60500.795253] FAST spr round 2 (radius: 25) [03:23:56 -59867.255697] FAST spr round 3 (radius: 25) [03:25:29 -59815.071627] FAST spr round 4 (radius: 25) [03:26:53 -59683.798666] FAST spr round 5 (radius: 25) [03:28:13 -59679.842204] FAST spr round 6 (radius: 25) [03:29:30 -59679.840136] Model parameter optimization (eps = 1.000000) [03:29:46 -59676.192522] SLOW spr round 1 (radius: 5) [03:31:21 -59648.065139] SLOW spr round 2 (radius: 5) [03:32:54 -59646.129503] SLOW spr round 3 (radius: 5) [03:34:27 -59646.129248] SLOW spr round 4 (radius: 10) [03:36:01 -59646.129170] SLOW spr round 5 (radius: 15) [03:37:59] [worker #1] ML tree search #6, logLikelihood: -59464.220838 [03:38:18 -59646.129111] SLOW spr round 6 (radius: 20) [03:41:21 -59645.445217] SLOW spr round 7 (radius: 5) [03:43:18 -59645.291621] SLOW spr round 8 (radius: 5) [03:45:03 -59645.290140] SLOW spr round 9 (radius: 10) [03:46:42 -59645.290048] SLOW spr round 10 (radius: 15) [03:49:01 -59645.290039] SLOW spr round 11 (radius: 20) [03:52:24 -59645.290038] SLOW spr round 12 (radius: 25) [03:56:20 -59636.380579] SLOW spr round 13 (radius: 5) [03:58:21 -59605.478802] SLOW spr round 14 (radius: 5) [04:00:09 -59603.243147] SLOW spr round 15 (radius: 5) [04:01:48 -59603.089577] SLOW spr round 16 (radius: 5) [04:03:22 -59603.088546] SLOW spr round 17 (radius: 10) [04:04:56 -59603.088516] SLOW spr round 18 (radius: 15) [04:07:12 -59603.088515] SLOW spr round 19 (radius: 20) [04:10:18 -59603.088515] SLOW spr round 20 (radius: 25) [04:14:11 -59603.088515] Model parameter optimization (eps = 0.100000) [04:14:27] [worker #0] ML tree search #7, logLikelihood: -59602.782212 [04:14:27 -186433.726934] Initial branch length optimization [04:14:28 -159228.516057] Model parameter optimization (eps = 10.000000) [04:14:50 -158115.196196] AUTODETECT spr round 1 (radius: 5) [04:16:29 -113690.536061] AUTODETECT spr round 2 (radius: 10) [04:18:22 -85924.580475] AUTODETECT spr round 3 (radius: 15) [04:20:19 -76034.321169] AUTODETECT spr round 4 (radius: 20) [04:22:29 -70402.344664] AUTODETECT spr round 5 (radius: 25) [04:25:16 -67706.257294] SPR radius for FAST iterations: 25 (autodetect) [04:25:16 -67706.257294] Model parameter optimization (eps = 3.000000) [04:25:35 -67675.832696] FAST spr round 1 (radius: 25) [04:27:58 -60448.671566] FAST spr round 2 (radius: 25) [04:29:48 -59645.436747] FAST spr round 3 (radius: 25) [04:31:24 -59561.129829] FAST spr round 4 (radius: 25) [04:32:55 -59535.848271] FAST spr round 5 (radius: 25) [04:34:20 -59518.573192] FAST spr round 6 (radius: 25) [04:35:42 -59516.272140] FAST spr round 7 (radius: 25) [04:36:59 -59514.954413] FAST spr round 8 (radius: 25) [04:38:14 -59514.953129] Model parameter optimization (eps = 1.000000) [04:38:24 -59503.940117] SLOW spr round 1 (radius: 5) [04:39:56 -59483.422254] SLOW spr round 2 (radius: 5) [04:41:30 -59480.715407] SLOW spr round 3 (radius: 5) [04:41:35] [worker #1] ML tree search #8, logLikelihood: -59493.939647 [04:43:03 -59480.649408] SLOW spr round 4 (radius: 10) [04:44:39 -59478.030668] SLOW spr round 5 (radius: 5) [04:46:33 -59476.941398] SLOW spr round 6 (radius: 5) [04:48:20 -59476.446188] SLOW spr round 7 (radius: 5) [04:49:55 -59476.445976] SLOW spr round 8 (radius: 10) [04:51:28 -59476.445869] SLOW spr round 9 (radius: 15) [04:53:56 -59474.353015] SLOW spr round 10 (radius: 5) [04:55:57 -59472.512278] SLOW spr round 11 (radius: 5) [04:57:43 -59472.511949] SLOW spr round 12 (radius: 10) [04:59:24 -59470.837537] SLOW spr round 13 (radius: 5) [05:01:16 -59470.837442] SLOW spr round 14 (radius: 10) [05:03:01 -59470.837349] SLOW spr round 15 (radius: 15) [05:05:25 -59470.837257] SLOW spr round 16 (radius: 20) [05:09:11 -59470.837166] SLOW spr round 17 (radius: 25) [05:13:48 -59470.448954] SLOW spr round 18 (radius: 5) [05:15:51 -59470.421145] SLOW spr round 19 (radius: 10) [05:17:45 -59470.420964] SLOW spr round 20 (radius: 15) [05:20:10 -59467.565101] SLOW spr round 21 (radius: 5) [05:22:09 -59466.358929] SLOW spr round 22 (radius: 5) [05:23:53 -59465.826429] SLOW spr round 23 (radius: 5) [05:25:28 -59465.826145] SLOW spr round 24 (radius: 10) [05:27:03 -59465.826046] SLOW spr round 25 (radius: 15) [05:29:25 -59463.886468] SLOW spr round 26 (radius: 5) [05:31:19 -59463.797305] SLOW spr round 27 (radius: 10) [05:33:04 -59461.423672] SLOW spr round 28 (radius: 5) [05:34:52 -59460.825782] SLOW spr round 29 (radius: 5) [05:36:29 -59460.824974] SLOW spr round 30 (radius: 10) [05:38:04 -59460.824863] SLOW spr round 31 (radius: 15) [05:40:23 -59460.824791] SLOW spr round 32 (radius: 20) [05:43:49 -59460.276252] SLOW spr round 33 (radius: 5) [05:45:44 -59459.262482] SLOW spr round 34 (radius: 5) [05:46:16] [worker #1] ML tree search #10, logLikelihood: -59461.106316 [05:47:32 -59455.830732] SLOW spr round 35 (radius: 5) [05:49:15 -59455.459653] SLOW spr round 36 (radius: 5) [05:50:52 -59455.459554] SLOW spr round 37 (radius: 10) [05:52:28 -59455.459493] SLOW spr round 38 (radius: 15) [05:55:01 -59455.459437] SLOW spr round 39 (radius: 20) [05:58:40 -59455.459382] SLOW spr round 40 (radius: 25) [06:03:00 -59455.414099] Model parameter optimization (eps = 0.100000) [06:03:06] [worker #0] ML tree search #9, logLikelihood: -59455.266204 [06:03:06 -186487.178534] Initial branch length optimization [06:03:07 -158596.153549] Model parameter optimization (eps = 10.000000) [06:03:32 -157493.227108] AUTODETECT spr round 1 (radius: 5) [06:05:13 -111044.378988] AUTODETECT spr round 2 (radius: 10) [06:07:03 -85465.820726] AUTODETECT spr round 3 (radius: 15) [06:09:03 -74617.813275] AUTODETECT spr round 4 (radius: 20) [06:11:17 -67370.481580] AUTODETECT spr round 5 (radius: 25) [06:13:48 -66500.844846] SPR radius for FAST iterations: 25 (autodetect) [06:13:48 -66500.844846] Model parameter optimization (eps = 3.000000) [06:14:03 -66418.022697] FAST spr round 1 (radius: 25) [06:16:30 -60040.604494] FAST spr round 2 (radius: 25) [06:18:25 -59605.416732] FAST spr round 3 (radius: 25) [06:20:01 -59538.078095] FAST spr round 4 (radius: 25) [06:21:27 -59529.031269] FAST spr round 5 (radius: 25) [06:22:45 -59529.029530] Model parameter optimization (eps = 1.000000) [06:22:56 -59526.015533] SLOW spr round 1 (radius: 5) [06:24:30 -59515.194522] SLOW spr round 2 (radius: 5) [06:26:04 -59508.954809] SLOW spr round 3 (radius: 5) [06:27:39 -59501.657694] SLOW spr round 4 (radius: 5) [06:29:12 -59501.554129] SLOW spr round 5 (radius: 5) [06:30:46 -59499.150743] SLOW spr round 6 (radius: 5) [06:32:22 -59496.086866] SLOW spr round 7 (radius: 5) [06:33:59 -59494.077015] SLOW spr round 8 (radius: 5) [06:35:31 -59494.076915] SLOW spr round 9 (radius: 10) [06:37:08 -59488.371771] SLOW spr round 10 (radius: 5) [06:39:00 -59485.699978] SLOW spr round 11 (radius: 5) [06:40:40 -59485.699588] SLOW spr round 12 (radius: 10) [06:42:20 -59481.144735] SLOW spr round 13 (radius: 5) [06:44:14 -59478.882011] SLOW spr round 14 (radius: 5) [06:46:00 -59478.881815] SLOW spr round 15 (radius: 10) [06:47:42 -59478.881754] SLOW spr round 16 (radius: 15) [06:50:05 -59475.579833] SLOW spr round 17 (radius: 5) [06:51:58 -59475.562950] SLOW spr round 18 (radius: 10) [06:53:43 -59475.560434] SLOW spr round 19 (radius: 15) [06:55:55 -59475.558665] SLOW spr round 20 (radius: 20) [06:59:06 -59475.276037] SLOW spr round 21 (radius: 5) [07:01:02 -59475.273468] SLOW spr round 22 (radius: 10) [07:02:56 -59475.272581] SLOW spr round 23 (radius: 15) [07:05:15 -59475.272267] SLOW spr round 24 (radius: 20) [07:08:36 -59475.272153] SLOW spr round 25 (radius: 25) [07:12:44 -59475.272112] Model parameter optimization (eps = 0.100000) [07:12:48] [worker #0] ML tree search #11, logLikelihood: -59475.219414 [07:12:48 -187466.963744] Initial branch length optimization [07:12:50 -160243.925866] Model parameter optimization (eps = 10.000000) [07:13:16 -159060.570587] AUTODETECT spr round 1 (radius: 5) [07:14:00] [worker #1] ML tree search #12, logLikelihood: -59465.550183 [07:15:00 -111412.660214] AUTODETECT spr round 2 (radius: 10) [07:16:53 -86720.981972] AUTODETECT spr round 3 (radius: 15) [07:18:56 -77100.548237] AUTODETECT spr round 4 (radius: 20) [07:21:30 -70873.944920] AUTODETECT spr round 5 (radius: 25) [07:24:16 -67657.777330] SPR radius for FAST iterations: 25 (autodetect) [07:24:16 -67657.777330] Model parameter optimization (eps = 3.000000) [07:24:35 -67598.011875] FAST spr round 1 (radius: 25) [07:27:13 -60381.022406] FAST spr round 2 (radius: 25) [07:29:03 -59619.848545] FAST spr round 3 (radius: 25) [07:30:43 -59573.109409] FAST spr round 4 (radius: 25) [07:32:09 -59571.194979] FAST spr round 5 (radius: 25) [07:33:31 -59567.710310] FAST spr round 6 (radius: 25) [07:34:49 -59565.231497] FAST spr round 7 (radius: 25) [07:36:05 -59565.206797] Model parameter optimization (eps = 1.000000) [07:36:20 -59560.852494] SLOW spr round 1 (radius: 5) [07:37:53 -59540.777955] SLOW spr round 2 (radius: 5) [07:39:26 -59538.939272] SLOW spr round 3 (radius: 5) [07:40:56 -59538.938840] SLOW spr round 4 (radius: 10) [07:42:30 -59535.305998] SLOW spr round 5 (radius: 5) [07:44:20 -59534.531194] SLOW spr round 6 (radius: 5) [07:46:01 -59534.531059] SLOW spr round 7 (radius: 10) [07:47:38 -59532.875514] SLOW spr round 8 (radius: 5) [07:49:27 -59532.875511] SLOW spr round 9 (radius: 10) [07:51:08 -59532.875510] SLOW spr round 10 (radius: 15) [07:53:24 -59532.585152] SLOW spr round 11 (radius: 5) [07:55:19 -59532.546381] SLOW spr round 12 (radius: 10) [07:57:03 -59532.545723] SLOW spr round 13 (radius: 15) [07:59:17 -59532.545394] SLOW spr round 14 (radius: 20) [08:02:46 -59531.740119] SLOW spr round 15 (radius: 5) [08:04:40 -59531.513808] SLOW spr round 16 (radius: 5) [08:06:23 -59531.513776] SLOW spr round 17 (radius: 10) [08:08:00 -59531.513775] SLOW spr round 18 (radius: 15) [08:10:15 -59530.110059] SLOW spr round 19 (radius: 5) [08:12:07 -59530.109956] SLOW spr round 20 (radius: 10) [08:13:51 -59530.109951] SLOW spr round 21 (radius: 15) [08:16:03 -59530.109949] SLOW spr round 22 (radius: 20) [08:19:32 -59530.109949] SLOW spr round 23 (radius: 25) [08:23:50 -59501.613780] SLOW spr round 24 (radius: 5) [08:25:50 -59491.090838] SLOW spr round 25 (radius: 5) [08:27:36 -59491.038521] SLOW spr round 26 (radius: 10) [08:29:18 -59491.038389] SLOW spr round 27 (radius: 15) [08:31:44 -59491.038381] SLOW spr round 28 (radius: 20) [08:35:15 -59491.038381] SLOW spr round 29 (radius: 25) [08:39:35 -59491.038381] Model parameter optimization (eps = 0.100000) [08:39:38] [worker #0] ML tree search #13, logLikelihood: -59491.028771 [08:39:38 -185285.196722] Initial branch length optimization [08:39:41 -157785.028263] Model parameter optimization (eps = 10.000000) [08:40:06 -156655.810914] AUTODETECT spr round 1 (radius: 5) [08:40:42] [worker #1] ML tree search #14, logLikelihood: -59467.149257 [08:41:46 -112716.910096] AUTODETECT spr round 2 (radius: 10) [08:43:38 -85924.241226] AUTODETECT spr round 3 (radius: 15) [08:45:33 -76014.001651] AUTODETECT spr round 4 (radius: 20) [08:47:54 -69871.777200] AUTODETECT spr round 5 (radius: 25) [08:50:56 -66704.725081] SPR radius for FAST iterations: 25 (autodetect) [08:50:56 -66704.725081] Model parameter optimization (eps = 3.000000) [08:51:12 -66626.330787] FAST spr round 1 (radius: 25) [08:53:42 -60119.805374] FAST spr round 2 (radius: 25) [08:55:28 -59690.689041] FAST spr round 3 (radius: 25) [08:57:02 -59608.606692] FAST spr round 4 (radius: 25) [08:58:29 -59550.631959] FAST spr round 5 (radius: 25) [08:59:51 -59538.362628] FAST spr round 6 (radius: 25) [09:01:09 -59532.160012] FAST spr round 7 (radius: 25) [09:02:25 -59532.159113] Model parameter optimization (eps = 1.000000) [09:02:32 -59531.040169] SLOW spr round 1 (radius: 5) [09:04:06 -59507.597787] SLOW spr round 2 (radius: 5) [09:05:39 -59504.112143] SLOW spr round 3 (radius: 5) [09:07:13 -59502.346693] SLOW spr round 4 (radius: 5) [09:08:45 -59501.969360] SLOW spr round 5 (radius: 5) [09:10:15 -59501.969071] SLOW spr round 6 (radius: 10) [09:11:47 -59501.968891] SLOW spr round 7 (radius: 15) [09:14:12 -59498.288297] SLOW spr round 8 (radius: 5) [09:16:06 -59497.729570] SLOW spr round 9 (radius: 5) [09:17:49 -59497.728491] SLOW spr round 10 (radius: 10) [09:19:25 -59497.728359] SLOW spr round 11 (radius: 15) [09:21:44 -59497.728294] SLOW spr round 12 (radius: 20) [09:25:14 -59497.728245] SLOW spr round 13 (radius: 25) [09:29:39 -59496.570175] SLOW spr round 14 (radius: 5) [09:31:34 -59496.569493] SLOW spr round 15 (radius: 10) [09:33:21 -59495.692333] SLOW spr round 16 (radius: 5) [09:35:08 -59495.385853] SLOW spr round 17 (radius: 5) [09:36:46 -59495.385626] SLOW spr round 18 (radius: 10) [09:38:20 -59495.385610] SLOW spr round 19 (radius: 15) [09:39:27] [worker #1] ML tree search #16, logLikelihood: -59534.257179 [09:40:40 -59495.385607] SLOW spr round 20 (radius: 20) [09:44:11 -59495.385606] SLOW spr round 21 (radius: 25) [09:48:35 -59495.385605] Model parameter optimization (eps = 0.100000) [09:48:40] [worker #0] ML tree search #15, logLikelihood: -59495.292710 [09:48:40 -186385.347773] Initial branch length optimization [09:48:43 -158391.568866] Model parameter optimization (eps = 10.000000) [09:49:06 -157095.135473] AUTODETECT spr round 1 (radius: 5) [09:50:45 -111732.935897] AUTODETECT spr round 2 (radius: 10) [09:52:34 -86056.798298] AUTODETECT spr round 3 (radius: 15) [09:54:33 -71194.456020] AUTODETECT spr round 4 (radius: 20) [09:56:43 -66835.797688] AUTODETECT spr round 5 (radius: 25) [09:59:39 -65691.193958] SPR radius for FAST iterations: 25 (autodetect) [09:59:39 -65691.193958] Model parameter optimization (eps = 3.000000) [09:59:57 -65619.785231] FAST spr round 1 (radius: 25) [10:02:08 -60153.192572] FAST spr round 2 (radius: 25) [10:03:51 -59670.515992] FAST spr round 3 (radius: 25) [10:05:20 -59537.178024] FAST spr round 4 (radius: 25) [10:06:46 -59512.807999] FAST spr round 5 (radius: 25) [10:08:07 -59504.709695] FAST spr round 6 (radius: 25) [10:09:23 -59504.703521] Model parameter optimization (eps = 1.000000) [10:09:29 -59503.260514] SLOW spr round 1 (radius: 5) [10:11:06 -59479.250338] SLOW spr round 2 (radius: 5) [10:12:40 -59475.258890] SLOW spr round 3 (radius: 5) [10:14:11 -59475.168041] SLOW spr round 4 (radius: 10) [10:15:43 -59473.774209] SLOW spr round 5 (radius: 5) [10:17:36 -59466.982620] SLOW spr round 6 (radius: 5) [10:19:17 -59466.869848] SLOW spr round 7 (radius: 5) [10:20:51 -59466.869812] SLOW spr round 8 (radius: 10) [10:22:24 -59464.968782] SLOW spr round 9 (radius: 5) [10:24:14 -59461.689544] SLOW spr round 10 (radius: 5) [10:25:54 -59461.689511] SLOW spr round 11 (radius: 10) [10:27:30 -59461.689503] SLOW spr round 12 (radius: 15) [10:29:45 -59461.689498] SLOW spr round 13 (radius: 20) [10:33:00 -59461.689496] SLOW spr round 14 (radius: 25) [10:37:10 -59461.689494] Model parameter optimization (eps = 0.100000) [10:37:14] [worker #0] ML tree search #17, logLikelihood: -59461.654931 [10:37:14 -184156.573093] Initial branch length optimization [10:37:17 -156578.094424] Model parameter optimization (eps = 10.000000) [10:37:53 -155315.858414] AUTODETECT spr round 1 (radius: 5) [10:39:34 -113758.839924] AUTODETECT spr round 2 (radius: 10) [10:41:28 -85333.019885] AUTODETECT spr round 3 (radius: 15) [10:43:23 -74714.566597] AUTODETECT spr round 4 (radius: 20) [10:45:29 -68979.838666] AUTODETECT spr round 5 (radius: 25) [10:48:06 -66785.052546] SPR radius for FAST iterations: 25 (autodetect) [10:48:06 -66785.052546] Model parameter optimization (eps = 3.000000) [10:48:23 -66716.212742] FAST spr round 1 (radius: 25) [10:50:40 -60049.335216] FAST spr round 2 (radius: 25) [10:52:29 -59607.749659] FAST spr round 3 (radius: 25) [10:54:03 -59522.153861] FAST spr round 4 (radius: 25) [10:55:27 -59500.607859] FAST spr round 5 (radius: 25) [10:56:48 -59497.367085] FAST spr round 6 (radius: 25) [10:58:05 -59496.440453] FAST spr round 7 (radius: 25) [10:59:21 -59496.437991] Model parameter optimization (eps = 1.000000) [10:59:33 -59487.524453] SLOW spr round 1 (radius: 5) [11:00:08] [worker #1] ML tree search #18, logLikelihood: -59469.994763 [11:01:07 -59470.791211] SLOW spr round 2 (radius: 5) [11:02:41 -59468.748466] SLOW spr round 3 (radius: 5) [11:04:15 -59466.164217] SLOW spr round 4 (radius: 5) [11:05:53 -59466.163153] SLOW spr round 5 (radius: 10) [11:07:29 -59465.273488] SLOW spr round 6 (radius: 5) [11:09:20 -59463.959171] SLOW spr round 7 (radius: 5) [11:11:03 -59456.841819] SLOW spr round 8 (radius: 5) [11:12:39 -59455.116224] SLOW spr round 9 (radius: 5) [11:14:11 -59455.115523] SLOW spr round 10 (radius: 10) [11:15:43 -59455.115495] SLOW spr round 11 (radius: 15) [11:18:04 -59454.392273] SLOW spr round 12 (radius: 5) [11:19:59 -59451.054975] SLOW spr round 13 (radius: 5) [11:21:42 -59450.543063] SLOW spr round 14 (radius: 5) [11:23:16 -59450.543027] SLOW spr round 15 (radius: 10) [11:24:50 -59450.543025] SLOW spr round 16 (radius: 15) [11:27:12 -59450.543024] SLOW spr round 17 (radius: 20) [11:30:31 -59450.543022] SLOW spr round 18 (radius: 25) [11:34:39 -59450.543021] Model parameter optimization (eps = 0.100000) [11:34:43] [worker #0] ML tree search #19, logLikelihood: -59450.463962 [12:07:10] [worker #1] ML tree search #20, logLikelihood: -59495.606955 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.103065,0.504512) (0.247455,0.490322) (0.432985,1.059379) (0.216495,1.699690) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -59450.463962 AIC score: 122798.927924 / AICc score: 7723898.927924 / BIC score: 127817.039621 Free parameters (model + branch lengths): 1949 WARNING: Number of free parameters (K=1949) is larger than alignment size (n=97). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IVV2/3_mltree/Q8IVV2.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IVV2/3_mltree/Q8IVV2.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IVV2/3_mltree/Q8IVV2.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q8IVV2/3_mltree/Q8IVV2.raxml.log Analysis started: 05-Jul-2021 19:53:10 / finished: 06-Jul-2021 08:00:21 Elapsed time: 43630.250 seconds Consumed energy: 3532.920 Wh (= 18 km in an electric car, or 88 km with an e-scooter!)