RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 18:38:15 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8IUH8/2_msa/Q8IUH8_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8IUH8/3_mltree/Q8IUH8.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8IUH8/4_raxmlng_ancestral/Q8IUH8 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622648295 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8IUH8/2_msa/Q8IUH8_nogap_msa.fasta [00:00:00] Loaded alignment with 875 taxa and 684 sites WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_H9G7B2_H9G7B2_ANOCA_28377 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_G1ST67_G1ST67_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_H0WYP6_H0WYP6_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and sp_Q8TCT6_SPPL3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_G3SL73_G3SL73_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_U3BVW1_U3BVW1_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_F1RJH1_F1RJH1_PIG_9823 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A2I2UMN2_A0A2I2UMN2_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A096MYY1_A0A096MYY1_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A0D9S4L7_A0A0D9S4L7_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A1S2ZVQ0_A0A1S2ZVQ0_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A1U7R1C7_A0A1U7R1C7_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A2K5N6D5_A0A2K5N6D5_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A2K6BP08_A0A2K6BP08_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A2U4CJZ0_A0A2U4CJZ0_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A2U3VNX7_A0A2U3VNX7_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A2U3Y291_A0A2U3Y291_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A2Y9DR46_A0A2Y9DR46_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A2Y9KGX1_A0A2Y9KGX1_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A2Y9LDA8_A0A2Y9LDA8_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9CUS9_SPPL3_MOUSE_10090 and tr_A0A2Y9SJM6_A0A2Y9SJM6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XVZ8_M3XVZ8_MUSPF_9669 and tr_G3HI62_G3HI62_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3XVZ8_M3XVZ8_MUSPF_9669 and tr_F7E847_F7E847_ORNAN_9258 are exactly identical! WARNING: Sequences tr_G1S1E1_G1S1E1_NOMLE_61853 and tr_A0A2I2YMY9_A0A2I2YMY9_GORGO_9595 are exactly identical! WARNING: Sequences tr_G3RBH8_G3RBH8_GORGO_9595 and tr_H2Q9F2_H2Q9F2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RBH8_G3RBH8_GORGO_9595 and tr_A0A2R9A3S6_A0A2R9A3S6_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2P1K0_H2P1K0_PONAB_9601 and sp_Q8TCT9_HM13_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q29N52_Q29N52_DROPS_46245 and tr_B4G889_B4G889_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2RB96_E2RB96_CANLF_9615 and tr_A0A2U3VEZ7_A0A2U3VEZ7_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2RB96_E2RB96_CANLF_9615 and tr_A0A2U3X7Z8_A0A2U3X7Z8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2I3RSV0_A0A2I3RSV0_PANTR_9598 and tr_A0A2R9AJ75_A0A2R9AJ75_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QEW7_H2QEW7_PANTR_9598 and tr_A0A2R9BH24_A0A2R9BH24_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A158NVX7_A0A158NVX7_ATTCE_12957 and tr_F4X4Y3_F4X4Y3_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NVX7_A0A158NVX7_ATTCE_12957 and tr_A0A151HYR6_A0A151HYR6_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A0E0FXI5_A0A0E0FXI5_ORYNI_4536 and tr_B8A851_B8A851_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0G054_A0A0E0G054_ORYNI_4536 and tr_A0A0D3EZU1_A0A0D3EZU1_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0G054_A0A0E0G054_ORYNI_4536 and tr_A0A0D9YLC5_A0A0D9YLC5_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0IRQ8_A0A0E0IRQ8_ORYNI_4536 and tr_A2Z6W4_A2Z6W4_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0IRQ8_A0A0E0IRQ8_ORYNI_4536 and tr_I1QU55_I1QU55_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0IRQ8_A0A0E0IRQ8_ORYNI_4536 and tr_A0A0E0QYM3_A0A0E0QYM3_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0IRQ8_A0A0E0IRQ8_ORYNI_4536 and tr_A0A0E0BA17_A0A0E0BA17_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0IRQ8_A0A0E0IRQ8_ORYNI_4536 and sp_Q7G7C7_SIPL1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0K0JJH6_A0A0K0JJH6_BRUMA_6279 and tr_A0A0N4TMR2_A0A0N4TMR2_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0JJH6_A0A0K0JJH6_BRUMA_6279 and tr_A0A0R3QN45_A0A0R3QN45_9BILA_42155 are exactly identical! WARNING: Sequences tr_F7BXY7_F7BXY7_MACMU_9544 and tr_A0A2K6CBP6_A0A2K6CBP6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7BXY7_F7BXY7_MACMU_9544 and tr_A0A2R9AKK0_A0A2R9AKK0_PANPA_9597 are exactly identical! WARNING: Sequences tr_B8AGI1_B8AGI1_ORYSI_39946 and tr_A0A0E0N8W0_A0A0E0N8W0_ORYRU_4529 are exactly identical! WARNING: Sequences tr_B8AGI1_B8AGI1_ORYSI_39946 and sp_Q6ZGL9_SIP1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B8BKA5_B8BKA5_ORYSI_39946 and sp_Q53P98_SIPL2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_I1NUL7_I1NUL7_ORYGL_4538 and tr_A0A0E0CC25_A0A0E0CC25_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_I1NUL7_I1NUL7_ORYGL_4538 and tr_A0A0E0N6P6_A0A0E0N6P6_ORYRU_4529 are exactly identical! WARNING: Sequences tr_I1NUL7_I1NUL7_ORYGL_4538 and tr_A0A0D3EXT2_A0A0D3EXT2_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1NUL7_I1NUL7_ORYGL_4538 and sp_Q5N808_SIPL3_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_G7PGP1_G7PGP1_MACFA_9541 and tr_A0A2K5M940_A0A2K5M940_CERAT_9531 are exactly identical! WARNING: Sequences tr_M4E7N2_M4E7N2_BRARP_51351 and tr_A0A078I6Y8_A0A078I6Y8_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4ECQ7_M4ECQ7_BRARP_51351 and tr_A0A0D3AVM0_A0A0D3AVM0_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4EG79_M4EG79_BRARP_51351 and tr_A0A078I602_A0A078I602_BRANA_3708 are exactly identical! WARNING: Sequences tr_U3J3Q7_U3J3Q7_ANAPL_8839 and tr_A0A093PLM7_A0A093PLM7_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3J3Q7_U3J3Q7_ANAPL_8839 and tr_A0A087R8Q4_A0A087R8Q4_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3J3Q7_U3J3Q7_ANAPL_8839 and tr_A0A0A0AZQ0_A0A0A0AZQ0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_W2QLF8_W2QLF8_PHYPN_761204 and tr_A0A0W8CZC7_A0A0W8CZC7_PHYNI_4790 are exactly identical! WARNING: Sequences tr_A0A078FWA1_A0A078FWA1_BRANA_3708 and tr_A0A078J783_A0A078J783_BRANA_3708 are exactly identical! WARNING: Sequences tr_A0A078FWA1_A0A078FWA1_BRANA_3708 and tr_A0A0D3E7M3_A0A0D3E7M3_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078HK81_A0A078HK81_BRANA_3708 and tr_A0A0D3DZF4_A0A0D3DZF4_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0D2QLK2_A0A0D2QLK2_GOSRA_29730 and tr_A0A1U8LRV3_A0A1U8LRV3_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2QPX6_A0A0D2QPX6_GOSRA_29730 and tr_A0A1U8K2P6_A0A1U8K2P6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0V1CZL8_A0A0V1CZL8_TRIBR_45882 and tr_A0A0V1LMQ4_A0A0V1LMQ4_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CZL8_A0A0V1CZL8_TRIBR_45882 and tr_A0A0V1NYP4_A0A0V1NYP4_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0XWL8_A0A0V0XWL8_TRIPS_6337 and tr_A0A0V0XWR6_A0A0V0XWR6_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A1S3XRB8_A0A1S3XRB8_TOBAC_4097 and tr_A0A1U7W722_A0A1U7W722_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3YQ05_A0A1S3YQ05_TOBAC_4097 and tr_A0A1U7WZM9_A0A1U7WZM9_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3ZG08_A0A1S3ZG08_TOBAC_4097 and tr_A0A1U7X2A7_A0A1U7X2A7_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A2D0SL43_A0A2D0SL43_ICTPU_7998 and tr_W5UD08_W5UD08_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1U8EFB2_A0A1U8EFB2_CAPAN_4072 and tr_A0A2G3BDI2_A0A2G3BDI2_CAPCH_80379 are exactly identical! WARNING: Duplicate sequences found: 74 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8IUH8/4_raxmlng_ancestral/Q8IUH8.raxml.reduced.phy Alignment comprises 1 partitions and 684 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 684 Gaps: 44.26 % Invariant sites: 0.15 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8IUH8/4_raxmlng_ancestral/Q8IUH8.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8IUH8/3_mltree/Q8IUH8.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 171 / 13680 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -196153.212721 [00:00:00 -196153.212721] Initial branch length optimization [00:00:01 -185934.281176] Model parameter optimization (eps = 0.100000) [00:00:42] Tree #1, final logLikelihood: -185543.923828 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.097975,0.188573) (0.162354,0.279415) (0.385447,0.715866) (0.354225,1.863879) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8IUH8/4_raxmlng_ancestral/Q8IUH8.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8IUH8/4_raxmlng_ancestral/Q8IUH8.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8IUH8/4_raxmlng_ancestral/Q8IUH8.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q8IUH8/4_raxmlng_ancestral/Q8IUH8.raxml.log Analysis started: 02-Jun-2021 18:38:15 / finished: 02-Jun-2021 18:39:03 Elapsed time: 47.932 seconds Consumed energy: 3.666 Wh