RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 16:51:03 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/2_msa/Q86XP0_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/3_mltree/Q86XP0 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/2_msa/Q86XP0_trimmed_msa.fasta [00:00:00] Loaded alignment with 856 taxa and 29 sites WARNING: Sequences tr_V7CDU5_V7CDU5_PHAVU_3885 and tr_A0A0R0FB49_A0A0R0FB49_SOYBN_3847 are exactly identical! WARNING: Sequences tr_A0A1D5NVL3_A0A1D5NVL3_CHICK_9031 and tr_G1NFT4_G1NFT4_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5NVL3_A0A1D5NVL3_CHICK_9031 and tr_U3I4X3_U3I4X3_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5NVL3_A0A1D5NVL3_CHICK_9031 and tr_A0A091W3C4_A0A091W3C4_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5NVL3_A0A1D5NVL3_CHICK_9031 and tr_A0A093G7L0_A0A093G7L0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5NVL3_A0A1D5NVL3_CHICK_9031 and tr_A0A226N784_A0A226N784_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5NVL3_A0A1D5NVL3_CHICK_9031 and tr_A0A226NYD6_A0A226NYD6_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PBK8_A0A1D5PBK8_CHICK_9031 and tr_U3JTL6_U3JTL6_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PBK8_A0A1D5PBK8_CHICK_9031 and tr_A0A093PS85_A0A093PS85_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5PBK8_A0A1D5PBK8_CHICK_9031 and tr_A0A091VV40_A0A091VV40_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PBK8_A0A1D5PBK8_CHICK_9031 and tr_A0A091W1M6_A0A091W1M6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5PBK8_A0A1D5PBK8_CHICK_9031 and tr_A0A099ZIJ3_A0A099ZIJ3_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PBK8_A0A1D5PBK8_CHICK_9031 and tr_A0A091IB81_A0A091IB81_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PGI1_A0A1D5PGI1_CHICK_9031 and tr_H0ZL74_H0ZL74_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5PGI1_A0A1D5PGI1_CHICK_9031 and tr_U3JTQ3_U3JTQ3_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PGI1_A0A1D5PGI1_CHICK_9031 and tr_U3IJV5_U3IJV5_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PGI1_A0A1D5PGI1_CHICK_9031 and tr_A0A091F463_A0A091F463_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1D5PGI1_A0A1D5PGI1_CHICK_9031 and tr_A0A091VVN3_A0A091VVN3_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PGI1_A0A1D5PGI1_CHICK_9031 and tr_A0A087QYR2_A0A087QYR2_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PGI1_A0A1D5PGI1_CHICK_9031 and tr_A0A093I3D0_A0A093I3D0_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PGI1_A0A1D5PGI1_CHICK_9031 and tr_A0A091W297_A0A091W297_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5PGI1_A0A1D5PGI1_CHICK_9031 and tr_A0A099ZE02_A0A099ZE02_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PGI1_A0A1D5PGI1_CHICK_9031 and tr_A0A091GP13_A0A091GP13_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5PGI1_A0A1D5PGI1_CHICK_9031 and tr_A0A093IHI9_A0A093IHI9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PGI1_A0A1D5PGI1_CHICK_9031 and tr_A0A091IEH0_A0A091IEH0_CALAN_9244 are exactly identical! WARNING: Sequences tr_E1BWG9_E1BWG9_CHICK_9031 and tr_G1NFN6_G1NFN6_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1N8Q4_F1N8Q4_CHICK_9031 and tr_A0A226N7A4_A0A226N7A4_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1N8Q4_F1N8Q4_CHICK_9031 and tr_A0A226NYF2_A0A226NYF2_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1NV21_F1NV21_CHICK_9031 and tr_G1NFU9_G1NFU9_MELGA_9103 are exactly identical! WARNING: Sequences tr_R4GGW5_R4GGW5_CHICK_9031 and tr_A0A218V9Z9_A0A218V9Z9_9PASE_299123 are exactly identical! WARNING: Sequences tr_B7ZCM9_B7ZCM9_MOUSE_10090 and sp_P0C871_PA24B_MOUSE_10090 are exactly identical! WARNING: Sequences tr_B7ZCM9_B7ZCM9_MOUSE_10090 and tr_A0A3Q0D0R2_A0A3Q0D0R2_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q50L42_PA24E_MOUSE_10090 and tr_F1LPY6_F1LPY6_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YDR6_M3YDR6_MUSPF_9669 and tr_F6ZRQ8_F6ZRQ8_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YDR6_M3YDR6_MUSPF_9669 and tr_A0A287BBG6_A0A287BBG6_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YDR6_M3YDR6_MUSPF_9669 and tr_G1MD23_G1MD23_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YDR6_M3YDR6_MUSPF_9669 and tr_A0A2Y9ILK6_A0A2Y9ILK6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YDR6_M3YDR6_MUSPF_9669 and tr_A0A384D035_A0A384D035_URSMA_29073 are exactly identical! WARNING: Sequences tr_C5YJC5_C5YJC5_SORBI_4558 and tr_K3YFZ6_K3YFZ6_SETIT_4555 are exactly identical! WARNING: Sequences tr_C5YJC5_C5YJC5_SORBI_4558 and tr_A0A1D6KI11_A0A1D6KI11_MAIZE_4577 are exactly identical! WARNING: Sequences tr_C5YJC5_C5YJC5_SORBI_4558 and tr_A0A2T7D908_A0A2T7D908_9POAL_1504633 are exactly identical! WARNING: Sequences tr_G1QV83_G1QV83_NOMLE_61853 and tr_G1T6I8_G1T6I8_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1QV83_G1QV83_NOMLE_61853 and sp_Q86XP0_PA24D_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QV83_G1QV83_NOMLE_61853 and tr_F7IBQ0_F7IBQ0_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QV83_G1QV83_NOMLE_61853 and tr_A0A1U7TX75_A0A1U7TX75_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1QVK3_G1QVK3_NOMLE_61853 and tr_G3S105_G3S105_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QVK3_G1QVK3_NOMLE_61853 and tr_A0A2I3TLH3_A0A2I3TLH3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QVK3_G1QVK3_NOMLE_61853 and sp_Q68DD2_PA24F_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QVK3_G1QVK3_NOMLE_61853 and tr_A0A2R9AYX5_A0A2R9AYX5_PANPA_9597 are exactly identical! WARNING: Sequences tr_D8QNF2_D8QNF2_SELML_88036 and tr_D8RDN0_D8RDN0_SELML_88036 are exactly identical! WARNING: Sequences tr_D8QTE8_D8QTE8_SELML_88036 and tr_D8SBX1_D8SBX1_SELML_88036 are exactly identical! WARNING: Sequences tr_D8RTB3_D8RTB3_SELML_88036 and tr_D8SQQ6_D8SQQ6_SELML_88036 are exactly identical! WARNING: Sequences tr_G3QDN8_G3QDN8_GORGO_9595 and tr_H2NMY3_H2NMY3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QDN8_G3QDN8_GORGO_9595 and tr_H2RHQ3_H2RHQ3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QDN8_G3QDN8_GORGO_9595 and sp_P0C869_PA24B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R844_G3R844_GORGO_9595 and tr_H2NMY6_H2NMY6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3R844_G3R844_GORGO_9595 and tr_H2Q988_H2Q988_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R844_G3R844_GORGO_9595 and sp_Q3MJ16_PA24E_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R844_G3R844_GORGO_9595 and tr_A0A1D5QN29_A0A1D5QN29_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3R844_G3R844_GORGO_9595 and tr_F7I9C0_F7I9C0_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3R844_G3R844_GORGO_9595 and tr_G7PAZ6_G7PAZ6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3R844_G3R844_GORGO_9595 and tr_A0A096NTR2_A0A096NTR2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3R844_G3R844_GORGO_9595 and tr_A0A0D9R763_A0A0D9R763_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3R844_G3R844_GORGO_9595 and tr_A0A2K5LD82_A0A2K5LD82_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R844_G3R844_GORGO_9595 and tr_A0A2K6C279_A0A2K6C279_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3R844_G3R844_GORGO_9595 and tr_A0A2K5XEZ1_A0A2K5XEZ1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3R844_G3R844_GORGO_9595 and tr_A0A2R9A0R6_A0A2R9A0R6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NFX7_G1NFX7_MELGA_9103 and tr_H0ZLA0_H0ZLA0_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G1NFX7_G1NFX7_MELGA_9103 and tr_A0A218V9I6_A0A218V9I6_9PASE_299123 are exactly identical! WARNING: Sequences tr_G1NFX7_G1NFX7_MELGA_9103 and tr_A0A226N7B3_A0A226N7B3_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1NFX7_G1NFX7_MELGA_9103 and tr_A0A226NXJ2_A0A226NXJ2_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1PGZ7_F1PGZ7_CANLF_9615 and tr_M3W7K6_M3W7K6_FELCA_9685 are exactly identical! WARNING: Sequences tr_H2Q989_H2Q989_PANTR_9598 and tr_A0A2R9BZ19_A0A2R9BZ19_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5QGU6_W5QGU6_SHEEP_9940 and tr_I3LX52_I3LX52_ICTTR_43179 are exactly identical! WARNING: Sequences tr_W5QGY6_W5QGY6_SHEEP_9940 and tr_A0A2U4BCU2_A0A2U4BCU2_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5QGY6_W5QGY6_SHEEP_9940 and tr_A0A2Y9PAN7_A0A2Y9PAN7_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5QGY6_W5QGY6_SHEEP_9940 and tr_A0A2Y9S693_A0A2Y9S693_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5QGY6_W5QGY6_SHEEP_9940 and tr_A0A383ZEV2_A0A383ZEV2_BALAS_310752 are exactly identical! WARNING: Sequences tr_F9FH91_F9FH91_FUSOF_660025 and tr_A0A0D2Y1E5_A0A0D2Y1E5_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9FH91_F9FH91_FUSOF_660025 and tr_N4UK52_N4UK52_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FH91_F9FH91_FUSOF_660025 and tr_X0BKV6_X0BKV6_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FH91_F9FH91_FUSOF_660025 and tr_A0A365NMF8_A0A365NMF8_GIBIN_948311 are exactly identical! WARNING: Sequences tr_M3ZYU0_M3ZYU0_XIPMA_8083 and tr_A0A2I4BSI6_A0A2I4BSI6_9TELE_52670 are exactly identical! WARNING: Sequences tr_K4CYN7_K4CYN7_SOLLC_4081 and tr_M1ANF4_M1ANF4_SOLTU_4113 are exactly identical! WARNING: Sequences tr_K4CYN7_K4CYN7_SOLLC_4081 and tr_A0A2G2YJX3_A0A2G2YJX3_CAPAN_4072 are exactly identical! WARNING: Sequences tr_K4CYN7_K4CYN7_SOLLC_4081 and tr_A0A2G3BDM8_A0A2G3BDM8_CAPCH_80379 are exactly identical! WARNING: Sequences tr_H0VNR0_H0VNR0_CAVPO_10141 and tr_G5BM22_G5BM22_HETGA_10181 are exactly identical! WARNING: Sequences tr_H0VNR0_H0VNR0_CAVPO_10141 and tr_A0A091DPG3_A0A091DPG3_FUKDA_885580 are exactly identical! WARNING: Sequences tr_J3KU73_J3KU73_ORYBR_4533 and tr_A0A0E0FYW7_A0A0E0FYW7_ORYNI_4536 are exactly identical! WARNING: Sequences tr_J3KU73_J3KU73_ORYBR_4533 and tr_B8B5H7_B8B5H7_ORYSI_39946 are exactly identical! WARNING: Sequences tr_J3KU73_J3KU73_ORYBR_4533 and tr_A0A0E0Q735_A0A0E0Q735_ORYRU_4529 are exactly identical! WARNING: Sequences tr_J3KU73_J3KU73_ORYBR_4533 and tr_A0A0E0AIN3_A0A0E0AIN3_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_J3KU73_J3KU73_ORYBR_4533 and tr_A0A0E0LJL7_A0A0E0LJL7_ORYPU_4537 are exactly identical! WARNING: Sequences tr_J3KU73_J3KU73_ORYBR_4533 and tr_Q7XAL6_Q7XAL6_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_J3MU29_J3MU29_ORYBR_4533 and tr_I1I862_I1I862_BRADI_15368 are exactly identical! WARNING: Sequences tr_J3MU29_J3MU29_ORYBR_4533 and tr_A0A287UI02_A0A287UI02_HORVV_112509 are exactly identical! WARNING: Sequences tr_J3MU29_J3MU29_ORYBR_4533 and tr_A0A0E0AWZ7_A0A0E0AWZ7_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_J3MU29_J3MU29_ORYBR_4533 and tr_A0A0E0LWA9_A0A0E0LWA9_ORYPU_4537 are exactly identical! WARNING: Sequences tr_J3MU29_J3MU29_ORYBR_4533 and tr_A0A0D9X985_A0A0D9X985_9ORYZ_77586 are exactly identical! WARNING: Sequences sp_Q8L706_SYT5_ARATH_3702 and tr_D7KF47_D7KF47_ARALL_81972 are exactly identical! WARNING: Sequences sp_Q8L706_SYT5_ARATH_3702 and tr_M4DG08_M4DG08_BRARP_51351 are exactly identical! WARNING: Sequences sp_Q8L706_SYT5_ARATH_3702 and tr_M4EP92_M4EP92_BRARP_51351 are exactly identical! WARNING: Sequences sp_Q8L706_SYT5_ARATH_3702 and tr_A0A078F9S9_A0A078F9S9_BRANA_3708 are exactly identical! WARNING: Sequences sp_Q8L706_SYT5_ARATH_3702 and tr_A0A078FTD3_A0A078FTD3_BRANA_3708 are exactly identical! WARNING: Sequences sp_Q8L706_SYT5_ARATH_3702 and tr_A0A078IDL1_A0A078IDL1_BRANA_3708 are exactly identical! WARNING: Sequences sp_Q8L706_SYT5_ARATH_3702 and tr_R0IG34_R0IG34_9BRAS_81985 are exactly identical! WARNING: Sequences sp_Q8L706_SYT5_ARATH_3702 and tr_V4L9B7_V4L9B7_EUTSA_72664 are exactly identical! WARNING: Sequences sp_Q8L706_SYT5_ARATH_3702 and tr_A0A0D3C7U9_A0A0D3C7U9_BRAOL_109376 are exactly identical! WARNING: Sequences sp_Q8L706_SYT5_ARATH_3702 and tr_A0A0D3DJ01_A0A0D3DJ01_BRAOL_109376 are exactly identical! WARNING: Sequences tr_Q9SKA3_Q9SKA3_ARATH_3702 and tr_D7KLT5_D7KLT5_ARALL_81972 are exactly identical! WARNING: Sequences tr_Q9SKA3_Q9SKA3_ARATH_3702 and tr_R0I587_R0I587_9BRAS_81985 are exactly identical! WARNING: Sequences tr_F6VHL0_F6VHL0_MACMU_9544 and tr_G7PAZ8_G7PAZ8_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6VHL0_F6VHL0_MACMU_9544 and tr_A0A096NTR4_A0A096NTR4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6VHL0_F6VHL0_MACMU_9544 and tr_A0A2K6BSP7_A0A2K6BSP7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HAE1_F7HAE1_MACMU_9544 and tr_G7PAZ7_G7PAZ7_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HAE1_F7HAE1_MACMU_9544 and tr_A0A096NTR3_A0A096NTR3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HAE1_F7HAE1_MACMU_9544 and tr_A0A0D9R7D8_A0A0D9R7D8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HAE1_F7HAE1_MACMU_9544 and tr_A0A2K5NCS6_A0A2K5NCS6_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HAE1_F7HAE1_MACMU_9544 and tr_A0A2K6AZQ6_A0A2K6AZQ6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HAE1_F7HAE1_MACMU_9544 and tr_A0A2K6AKI7_A0A2K6AKI7_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HAF3_F7HAF3_MACMU_9544 and tr_G7PAZ3_G7PAZ3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HAF3_F7HAF3_MACMU_9544 and tr_A0A2I3MN07_A0A2I3MN07_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HAF3_F7HAF3_MACMU_9544 and tr_A0A0D9R680_A0A0D9R680_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HAF3_F7HAF3_MACMU_9544 and tr_A0A2K5LY41_A0A2K5LY41_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HAF3_F7HAF3_MACMU_9544 and tr_A0A2K6DN32_A0A2K6DN32_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HAF3_F7HAF3_MACMU_9544 and tr_A0A2K5ZRU8_A0A2K5ZRU8_MANLE_9568 are exactly identical! WARNING: Sequences tr_I1QA20_I1QA20_ORYGL_4538 and tr_A0A0D3GPZ0_A0A0D3GPZ0_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1QAV7_I1QAV7_ORYGL_4538 and tr_A0A0E0Q8N0_A0A0E0Q8N0_ORYRU_4529 are exactly identical! WARNING: Sequences tr_I1QAV7_I1QAV7_ORYGL_4538 and tr_A0A0E0AK86_A0A0E0AK86_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_I1QAV7_I1QAV7_ORYGL_4538 and tr_Q69RN2_Q69RN2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_H0ZL27_H0ZL27_TAEGU_59729 and tr_A0A218VAA5_A0A218VAA5_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZL64_H0ZL64_TAEGU_59729 and tr_U3JTU2_U3JTU2_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZL64_H0ZL64_TAEGU_59729 and tr_A0A091F4Z8_A0A091F4Z8_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZL64_H0ZL64_TAEGU_59729 and tr_A0A218V9E3_A0A218V9E3_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZL67_H0ZL67_TAEGU_59729 and tr_A0A093G7L5_A0A093G7L5_DRYPU_118200 are exactly identical! WARNING: Sequences tr_H0ZL73_H0ZL73_TAEGU_59729 and tr_U3JTQ9_U3JTQ9_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZL73_H0ZL73_TAEGU_59729 and tr_A0A0Q3MU40_A0A0Q3MU40_AMAAE_12930 are exactly identical! WARNING: Sequences tr_H0ZL73_H0ZL73_TAEGU_59729 and tr_A0A093RW22_A0A093RW22_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZL73_H0ZL73_TAEGU_59729 and tr_A0A218V992_A0A218V992_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZL87_H0ZL87_TAEGU_59729 and tr_U3JTP5_U3JTP5_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZL87_H0ZL87_TAEGU_59729 and tr_A0A091K089_A0A091K089_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0ZL87_H0ZL87_TAEGU_59729 and tr_A0A087QYR3_A0A087QYR3_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZL87_H0ZL87_TAEGU_59729 and tr_A0A218V9U4_A0A218V9U4_9PASE_299123 are exactly identical! WARNING: Sequences tr_F7AAM3_F7AAM3_XENTR_8364 and tr_A0A1L8FAE2_A0A1L8FAE2_XENLA_8355 are exactly identical! WARNING: Sequences tr_I1LNN7_I1LNN7_SOYBN_3847 and tr_A0A0L9V8D7_A0A0L9V8D7_PHAAN_3914 are exactly identical! WARNING: Sequences tr_I1LNN7_I1LNN7_SOYBN_3847 and tr_A0A1S3TJ75_A0A1S3TJ75_VIGRR_3916 are exactly identical! WARNING: Sequences tr_G1MCX9_G1MCX9_AILME_9646 and tr_A0A384D0I7_A0A384D0I7_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1MD18_G1MD18_AILME_9646 and tr_A0A2U3VY54_A0A2U3VY54_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1MD18_G1MD18_AILME_9646 and tr_A0A2U3XJZ8_A0A2U3XJZ8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1MD18_G1MD18_AILME_9646 and tr_A0A384D0C9_A0A384D0C9_URSMA_29073 are exactly identical! WARNING: Sequences tr_B3S861_B3S861_TRIAD_10228 and tr_A0A369SF03_A0A369SF03_9METZ_287889 are exactly identical! WARNING: Sequences tr_G7PY13_G7PY13_MACFA_9541 and tr_A0A0D9S2P6_A0A0D9S2P6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_D7T4W1_D7T4W1_VITVI_29760 and tr_A0A2R6QIJ4_A0A2R6QIJ4_ACTCH_1590841 are exactly identical! WARNING: Sequences tr_D7T4W1_D7T4W1_VITVI_29760 and tr_A0A2R6QRZ5_A0A2R6QRZ5_ACTCH_1590841 are exactly identical! WARNING: Sequences tr_M4CTQ0_M4CTQ0_BRARP_51351 and tr_A0A078IHP8_A0A078IHP8_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4E6W8_M4E6W8_BRARP_51351 and tr_A0A078G9E9_A0A078G9E9_BRANA_3708 are exactly identical! WARNING: Sequences tr_R1B3S5_R1B3S5_EMIHU_2903 and tr_R1CGR8_R1CGR8_EMIHU_2903 are exactly identical! WARNING: Sequences tr_R1B3S5_R1B3S5_EMIHU_2903 and tr_R1EAT4_R1EAT4_EMIHU_2903 are exactly identical! WARNING: Sequences tr_T1LJ33_T1LJ33_TRIUA_4572 and tr_A0A3B6NSJ8_A0A3B6NSJ8_WHEAT_4565 are exactly identical! WARNING: Sequences tr_T1LJ33_T1LJ33_TRIUA_4572 and tr_A0A3B6PNZ3_A0A3B6PNZ3_WHEAT_4565 are exactly identical! WARNING: Sequences tr_T1LJ33_T1LJ33_TRIUA_4572 and tr_A0A3B6QGX8_A0A3B6QGX8_WHEAT_4565 are exactly identical! WARNING: Sequences tr_U3IJW3_U3IJW3_ANAPL_8839 and tr_A0A091F2Y8_A0A091F2Y8_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3IJW3_U3IJW3_ANAPL_8839 and tr_A0A093PL36_A0A093PL36_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3IJW3_U3IJW3_ANAPL_8839 and tr_A0A087QYR1_A0A087QYR1_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3IJW3_U3IJW3_ANAPL_8839 and tr_A0A2I0MNN3_A0A2I0MNN3_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3IJW3_U3IJW3_ANAPL_8839 and tr_A0A1V4KGL3_A0A1V4KGL3_PATFA_372326 are exactly identical! WARNING: Sequences tr_U3IJW3_U3IJW3_ANAPL_8839 and tr_A0A218V9P6_A0A218V9P6_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A3B6AWR5_A0A3B6AWR5_WHEAT_4565 and tr_A0A3B6C7K6_A0A3B6C7K6_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A015K3E4_A0A015K3E4_9GLOM_1432141 and tr_A0A2I1GDR2_A0A2I1GDR2_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015K3E4_A0A015K3E4_9GLOM_1432141 and tr_A0A2H5T0H5_A0A2H5T0H5_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015L344_A0A015L344_9GLOM_1432141 and tr_A0A2I1GDQ7_A0A2I1GDQ7_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A0E0LKZ4_A0A0E0LKZ4_ORYPU_4537 and tr_A0A0D9WZ58_A0A0D9WZ58_9ORYZ_77586 are exactly identical! WARNING: Sequences tr_A0A067F6Q0_A0A067F6Q0_CITSI_2711 and tr_V4UC75_V4UC75_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067F6Q0_A0A067F6Q0_CITSI_2711 and tr_A0A2H5P0G8_A0A2H5P0G8_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0D9R7Q4_A0A0D9R7Q4_CHLSB_60711 and tr_A0A2K5MMN6_A0A2K5MMN6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9R7Q4_A0A0D9R7Q4_CHLSB_60711 and tr_A0A2K5XFI3_A0A2K5XFI3_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0A0L1D6_A0A0A0L1D6_CUCSA_3659 and tr_A0A2R6Q4M7_A0A2R6Q4M7_ACTCH_1590841 are exactly identical! WARNING: Sequences tr_A0A0A0LI51_A0A0A0LI51_CUCSA_3659 and tr_A0A1S3C4W6_A0A1S3C4W6_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0A0LT88_A0A0A0LT88_CUCSA_3659 and tr_A0A1S4E5C6_A0A1S4E5C6_CUCME_3656 are exactly identical! WARNING: Sequences tr_W9RBH5_W9RBH5_9ROSA_981085 and tr_A0A2P5CER3_A0A2P5CER3_TREOI_63057 are exactly identical! WARNING: Sequences tr_W9RBH5_W9RBH5_9ROSA_981085 and tr_A0A2P5B1P9_A0A2P5B1P9_PARAD_3476 are exactly identical! WARNING: Sequences tr_W9RQD0_W9RQD0_9ROSA_981085 and tr_A0A2P5EXR0_A0A2P5EXR0_TREOI_63057 are exactly identical! WARNING: Sequences tr_A0A058ZRU4_A0A058ZRU4_EUCGR_71139 and tr_A0A058ZSU9_A0A058ZSU9_EUCGR_71139 are exactly identical! WARNING: Sequences tr_A0A0D2QVJ2_A0A0D2QVJ2_GOSRA_29730 and tr_A0A1U8JWB7_A0A1U8JWB7_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2QVJ2_A0A0D2QVJ2_GOSRA_29730 and tr_A0A1U8K684_A0A1U8K684_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2RDG3_A0A0D2RDG3_GOSRA_29730 and tr_A0A1U8PWZ6_A0A1U8PWZ6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2V6A3_A0A0D2V6A3_GOSRA_29730 and tr_A0A1U8IXB2_A0A1U8IXB2_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2V6A3_A0A0D2V6A3_GOSRA_29730 and tr_A0A1U8PTM6_A0A1U8PTM6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0K0F6Q6_A0A0K0F6Q6_STRVS_75913 and tr_A0A0N5BP80_A0A0N5BP80_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0A1NMY2_A0A0A1NMY2_9FUNG_58291 and tr_A0A367JG25_A0A367JG25_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0A1NMY2_A0A0A1NMY2_9FUNG_58291 and tr_A0A367KH39_A0A367KH39_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0A1NR99_A0A0A1NR99_9FUNG_58291 and tr_A0A367JDZ0_A0A367JDZ0_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A151M0U7_A0A151M0U7_ALLMI_8496 and tr_A0A1U7RH67_A0A1U7RH67_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MV36_A0A151MV36_ALLMI_8496 and tr_A0A1U8DGJ8_A0A1U8DGJ8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MV46_A0A151MV46_ALLMI_8496 and tr_A0A1U7SEA8_A0A1U7SEA8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MV70_A0A151MV70_ALLMI_8496 and tr_A0A1U8DZC2_A0A1U8DZC2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MV81_A0A151MV81_ALLMI_8496 and tr_A0A1U7SAF9_A0A1U7SAF9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MV97_A0A151MV97_ALLMI_8496 and tr_A0A1U7SLR6_A0A1U7SLR6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MVD9_A0A151MVD9_ALLMI_8496 and tr_A0A1U7SLS0_A0A1U7SLS0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3TZT8_A0A0Q3TZT8_AMAAE_12930 and tr_A0A091FQS3_A0A091FQS3_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A0Q3TZT8_A0A0Q3TZT8_AMAAE_12930 and tr_A0A091JBE3_A0A091JBE3_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A0Q3TZT8_A0A0Q3TZT8_AMAAE_12930 and tr_A0A093PS79_A0A093PS79_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A0Q3TZT8_A0A0Q3TZT8_AMAAE_12930 and tr_A0A2I0MPJ8_A0A2I0MPJ8_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A0Q3TZT8_A0A0Q3TZT8_AMAAE_12930 and tr_A0A1V4KEX8_A0A1V4KEX8_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0Q3TZT8_A0A0Q3TZT8_AMAAE_12930 and tr_A0A226NYR1_A0A226NYR1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A0Q3UU43_A0A0Q3UU43_AMAAE_12930 and tr_A0A087QYQ5_A0A087QYQ5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0Q3UU43_A0A0Q3UU43_AMAAE_12930 and tr_A0A2I0MPJ4_A0A2I0MPJ4_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A0Q3UU43_A0A0Q3UU43_AMAAE_12930 and tr_A0A093GAL0_A0A093GAL0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0Q3UU43_A0A0Q3UU43_AMAAE_12930 and tr_A0A1V4KEW0_A0A1V4KEW0_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0Q3UU43_A0A0Q3UU43_AMAAE_12930 and tr_A0A226MN43_A0A226MN43_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A0Q3UU43_A0A0Q3UU43_AMAAE_12930 and tr_A0A226NZC2_A0A226NZC2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A091J863_A0A091J863_EGRGA_188379 and tr_A0A093PDJ3_A0A093PDJ3_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091K086_A0A091K086_EGRGA_188379 and tr_A0A2I0MPL3_A0A2I0MPL3_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A091K086_A0A091K086_EGRGA_188379 and tr_A0A1V4KEV6_A0A1V4KEV6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0L9TRE5_A0A0L9TRE5_PHAAN_3914 and tr_A0A151SRE3_A0A151SRE3_CAJCA_3821 are exactly identical! WARNING: Sequences tr_A0A0L9TRE5_A0A0L9TRE5_PHAAN_3914 and tr_A0A1S3UTN5_A0A1S3UTN5_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A0L9TRE5_A0A0L9TRE5_PHAAN_3914 and tr_A0A3Q0F6G7_A0A3Q0F6G7_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A091VV47_A0A091VV47_NIPNI_128390 and tr_A0A087QYQ9_A0A087QYQ9_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VWP9_A0A091VWP9_NIPNI_128390 and tr_A0A087QYR0_A0A087QYR0_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VWP9_A0A091VWP9_NIPNI_128390 and tr_A0A091W450_A0A091W450_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091VWP9_A0A091VWP9_NIPNI_128390 and tr_A0A091GLP6_A0A091GLP6_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091VWP9_A0A091VWP9_NIPNI_128390 and tr_A0A0A0AQ57_A0A0A0AQ57_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A087QYQ8_A0A087QYQ8_APTFO_9233 and tr_A0A093HUE2_A0A093HUE2_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A099ZN52_A0A099ZN52_TINGU_94827 and tr_A0A226N6Z9_A0A226N6Z9_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A099ZN52_A0A099ZN52_TINGU_94827 and tr_A0A226NZD9_A0A226NZD9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A091GNN4_A0A091GNN4_9AVES_55661 and tr_A0A093GHC3_A0A093GHC3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2I0MNP5_A0A2I0MNP5_COLLI_8932 and tr_A0A1V4KER7_A0A1V4KER7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MNP5_A0A2I0MNP5_COLLI_8932 and tr_A0A226N725_A0A226N725_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A2I0MNP5_A0A2I0MNP5_COLLI_8932 and tr_A0A226NYT9_A0A226NYT9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2I0MPK7_A0A2I0MPK7_COLLI_8932 and tr_A0A1V4KEY9_A0A1V4KEY9_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S4AVC3_A0A1S4AVC3_TOBAC_4097 and tr_A0A1J6IVR3_A0A1J6IVR3_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4AVC3_A0A1S4AVC3_TOBAC_4097 and tr_A0A1U7VKQ6_A0A1U7VKQ6_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4CP12_A0A1S4CP12_TOBAC_4097 and tr_A0A1U7Y9J6_A0A1U7Y9J6_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3N3B2_A0A1S3N3B2_SALSA_8030 and tr_A0A060WTF2_A0A060WTF2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3N3B2_A0A1S3N3B2_SALSA_8030 and tr_A0A060Z178_A0A060Z178_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NVW9_A0A1S3NVW9_SALSA_8030 and tr_A0A060W7H3_A0A060W7H3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3P9G2_A0A1S3P9G2_SALSA_8030 and tr_A0A060W6W8_A0A060W6W8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1U7SFM1_A0A1U7SFM1_TARSY_1868482 and tr_A0A2Y9DUF8_A0A2Y9DUF8_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A1U7TMM2_A0A1U7TMM2_TARSY_1868482 and tr_A0A2Y9DTF2_A0A2Y9DTF2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A226N7X9_A0A226N7X9_CALSU_9009 and tr_A0A226NXL9_A0A226NXL9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A251V3W1_A0A251V3W1_HELAN_4232 and tr_A0A2U1MY23_A0A2U1MY23_ARTAN_35608 are exactly identical! WARNING: Sequences tr_A0A251V3W1_A0A251V3W1_HELAN_4232 and tr_A0A2U1NHL7_A0A2U1NHL7_ARTAN_35608 are exactly identical! WARNING: Sequences tr_A0A2D0R3H6_A0A2D0R3H6_ICTPU_7998 and tr_W5UBX3_W5UBX3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RKH1_A0A2D0RKH1_ICTPU_7998 and tr_A0A2D0RP65_A0A2D0RP65_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RTT2_A0A2D0RTT2_ICTPU_7998 and tr_A0A2D0RTU3_A0A2D0RTU3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RTT2_A0A2D0RTT2_ICTPU_7998 and tr_A0A2D0RVC4_A0A2D0RVC4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1U8GEN2_A0A1U8GEN2_CAPAN_4072 and tr_A0A2G3CMF6_A0A2G3CMF6_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A1U8GLJ0_A0A1U8GLJ0_CAPAN_4072 and tr_A0A2G3CDL1_A0A2G3CDL1_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2P5EWG0_A0A2P5EWG0_TREOI_63057 and tr_A0A2P5DDG3_A0A2P5DDG3_PARAD_3476 are exactly identical! WARNING: Sequences tr_A0A2U1PQA6_A0A2U1PQA6_ARTAN_35608 and tr_A0A2U1Q936_A0A2U1Q936_ARTAN_35608 are exactly identical! WARNING: Sequences tr_A0A2U4BBS1_A0A2U4BBS1_TURTR_9739 and tr_A0A2Y9PHP8_A0A2Y9PHP8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BBS1_A0A2U4BBS1_TURTR_9739 and tr_A0A2Y9FDP9_A0A2Y9FDP9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4BBS1_A0A2U4BBS1_TURTR_9739 and tr_A0A383ZFP2_A0A383ZFP2_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4BC54_A0A2U4BC54_TURTR_9739 and tr_A0A2Y9FFU8_A0A2Y9FFU8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4BC54_A0A2U4BC54_TURTR_9739 and tr_A0A383ZEU8_A0A383ZEU8_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3VY04_A0A2U3VY04_ODORO_9708 and tr_A0A2U3XJW9_A0A2U3XJW9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3VY47_A0A2U3VY47_ODORO_9708 and tr_A0A2U3XJX4_A0A2U3XJX4_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 257 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/3_mltree/Q86XP0.raxml.reduced.phy Alignment comprises 1 partitions and 29 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 29 / 29 Gaps: 4.35 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/3_mltree/Q86XP0.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 856 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 29 / 2320 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -49520.580848] Initial branch length optimization [00:00:00 -39863.804691] Model parameter optimization (eps = 10.000000) [00:00:15 -39265.887842] AUTODETECT spr round 1 (radius: 5) [00:01:00 -28983.780139] AUTODETECT spr round 2 (radius: 10) [00:01:49 -23040.680909] AUTODETECT spr round 3 (radius: 15) [00:02:46 -18965.974782] AUTODETECT spr round 4 (radius: 20) [00:03:45 -16465.529915] AUTODETECT spr round 5 (radius: 25) [00:04:44 -14892.236655] SPR radius for FAST iterations: 25 (autodetect) [00:04:44 -14892.236655] Model parameter optimization (eps = 3.000000) [00:04:59 -14774.141817] FAST spr round 1 (radius: 25) [00:05:49 -11980.722421] FAST spr round 2 (radius: 25) [00:06:36 -11524.431956] FAST spr round 3 (radius: 25) [00:07:22 -11356.841444] FAST spr round 4 (radius: 25) [00:08:06 -11354.634722] FAST spr round 5 (radius: 25) [00:08:49 -11353.934858] FAST spr round 6 (radius: 25) [00:09:32 -11353.867588] Model parameter optimization (eps = 1.000000) [00:09:40 -11349.372166] SLOW spr round 1 (radius: 5) [00:10:30 -11342.273396] SLOW spr round 2 (radius: 5) [00:11:21 -11339.683174] SLOW spr round 3 (radius: 5) [00:12:11 -11332.668392] SLOW spr round 4 (radius: 5) [00:13:00 -11331.508025] SLOW spr round 5 (radius: 5) [00:13:47 -11331.507110] SLOW spr round 6 (radius: 10) [00:14:36 -11330.616857] SLOW spr round 7 (radius: 5) [00:15:32 -11330.616856] SLOW spr round 8 (radius: 10) [00:16:24 -11292.664817] SLOW spr round 9 (radius: 5) [00:17:20 -11280.332565] SLOW spr round 10 (radius: 5) [00:18:12 -11280.332511] SLOW spr round 11 (radius: 10) [00:19:01 -11280.332509] SLOW spr round 12 (radius: 15) [00:20:03 -11277.146786] SLOW spr round 13 (radius: 5) [00:21:02 -11277.124141] SLOW spr round 14 (radius: 10) [00:21:54 -11274.987456] SLOW spr round 15 (radius: 5) [00:22:50 -11274.668392] SLOW spr round 16 (radius: 5) [00:23:42 -11274.667062] SLOW spr round 17 (radius: 10) [00:24:31 -11273.697838] SLOW spr round 18 (radius: 5) [00:25:27 -11273.697308] SLOW spr round 19 (radius: 10) [00:26:18 -11272.455987] SLOW spr round 20 (radius: 5) [00:27:14 -11272.455963] SLOW spr round 21 (radius: 10) [00:28:04 -11272.455963] SLOW spr round 22 (radius: 15) [00:29:03 -11271.322333] SLOW spr round 23 (radius: 5) [00:30:02 -11265.441600] SLOW spr round 24 (radius: 5) [00:30:55 -11265.236211] SLOW spr round 25 (radius: 5) [00:31:45 -11265.234622] SLOW spr round 26 (radius: 10) [00:32:34 -11265.234555] SLOW spr round 27 (radius: 15) [00:33:36 -11264.943291] SLOW spr round 28 (radius: 5) RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 18-Jul-2021 12:12:54 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/2_msa/Q86XP0_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/3_mltree/Q86XP0 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential WARNING: The model you specified on the command line (LG4X) will be ignored since the binary MSA file already contains a model definition. If you want to change the model, please re-run RAxML-NG with the original PHYLIP/FASTA alignment and --redo option. [00:00:00] Loading binary alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/3_mltree/Q86XP0.raxml.rba [00:00:00] Alignment comprises 856 taxa, 1 partitions and 29 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 29 / 29 Gaps: 4.35 % Invariant sites: 0.00 % Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] NOTE: Resuming execution from checkpoint (logLH: -11264.94, ML trees: 0, bootstraps: 0) [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 29 / 2320 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -11264.943291] SPR radius for FAST iterations: 25 (autodetect) [00:00:00 -11264.943291] SLOW spr round 28 (radius: 5) [00:01:00 -11263.731219] SLOW spr round 29 (radius: 5) [00:01:55 -11263.731156] SLOW spr round 30 (radius: 10) [00:02:45 -11263.731156] SLOW spr round 31 (radius: 15) [00:03:48 -11263.731156] SLOW spr round 32 (radius: 20) [00:05:05 -11242.688641] SLOW spr round 33 (radius: 5) [00:06:05 -11236.393136] SLOW spr round 34 (radius: 5) [00:07:00 -11236.383798] SLOW spr round 35 (radius: 10) [00:07:52 -11230.467072] SLOW spr round 36 (radius: 5) [00:08:49 -11230.283420] SLOW spr round 37 (radius: 5) [00:09:43 -11230.283420] SLOW spr round 38 (radius: 10) [00:10:33 -11230.283420] SLOW spr round 39 (radius: 15) [00:11:35 -11230.283420] SLOW spr round 40 (radius: 20) [00:12:51 -11230.223293] SLOW spr round 41 (radius: 25) [00:14:16 -11196.104184] SLOW spr round 42 (radius: 5) [00:15:16 -11196.102507] SLOW spr round 43 (radius: 10) [00:16:11 -11196.102505] SLOW spr round 44 (radius: 15) [00:17:11 -11196.102505] SLOW spr round 45 (radius: 20) [00:18:29 -11196.102159] SLOW spr round 46 (radius: 25) [00:19:54 -11196.102000] Model parameter optimization (eps = 0.100000) [00:20:01] ML tree search #1, logLikelihood: -11194.555757 [00:20:01 -49258.567031] Initial branch length optimization [00:20:02 -40079.706902] Model parameter optimization (eps = 10.000000) [00:20:10 -40062.189301] AUTODETECT spr round 1 (radius: 5) [00:20:57 -28618.656659] AUTODETECT spr round 2 (radius: 10) [00:21:49 -21399.284931] AUTODETECT spr round 3 (radius: 15) [00:22:46 -17917.031473] AUTODETECT spr round 4 (radius: 20) [00:23:46 -16648.838950] AUTODETECT spr round 5 (radius: 25) [00:24:56 -15101.024485] SPR radius for FAST iterations: 25 (autodetect) [00:24:56 -15101.024485] Model parameter optimization (eps = 3.000000) [00:25:07 -15026.837605] FAST spr round 1 (radius: 25) [00:26:02 -11936.507177] FAST spr round 2 (radius: 25) [00:26:53 -11469.823356] FAST spr round 3 (radius: 25) [00:27:43 -11356.926672] FAST spr round 4 (radius: 25) [00:28:30 -11351.332081] FAST spr round 5 (radius: 25) [00:29:17 -11351.331950] Model parameter optimization (eps = 1.000000) [00:29:26 -11347.442231] SLOW spr round 1 (radius: 5) [00:30:22 -11343.614467] SLOW spr round 2 (radius: 5) [00:31:16 -11343.438303] SLOW spr round 3 (radius: 5) [00:32:09 -11343.433798] SLOW spr round 4 (radius: 10) [00:33:03 -11340.381030] SLOW spr round 5 (radius: 5) [00:34:07 -11336.781162] SLOW spr round 6 (radius: 5) [00:35:05 -11334.223412] SLOW spr round 7 (radius: 5) [00:36:00 -11332.075873] SLOW spr round 8 (radius: 5) [00:36:54 -11329.297427] SLOW spr round 9 (radius: 5) [00:37:47 -11329.297426] SLOW spr round 10 (radius: 10) [00:38:40 -11329.297425] SLOW spr round 11 (radius: 15) [00:39:51 -11326.133974] SLOW spr round 12 (radius: 5) [00:40:55 -11322.591549] SLOW spr round 13 (radius: 5) [00:41:53 -11322.589098] SLOW spr round 14 (radius: 10) [00:42:47 -11322.588571] SLOW spr round 15 (radius: 15) [00:43:56 -11322.132516] SLOW spr round 16 (radius: 5) [00:45:00 -11321.488940] SLOW spr round 17 (radius: 5) [00:45:59 -11320.749530] SLOW spr round 18 (radius: 5) [00:46:53 -11320.746066] SLOW spr round 19 (radius: 10) [00:47:46 -11320.744755] SLOW spr round 20 (radius: 15) [00:48:56 -11320.541936] SLOW spr round 21 (radius: 5) [00:50:01 -11319.309843] SLOW spr round 22 (radius: 5) [00:51:00 -11314.838865] SLOW spr round 23 (radius: 5) [00:51:54 -11314.838864] SLOW spr round 24 (radius: 10) [00:52:47 -11314.838864] SLOW spr round 25 (radius: 15) [00:53:57 -11314.838864] SLOW spr round 26 (radius: 20) [00:55:33 -11312.143315] SLOW spr round 27 (radius: 5) [00:56:39 -11309.280121] SLOW spr round 28 (radius: 5) [00:57:38 -11309.279836] SLOW spr round 29 (radius: 10) [00:58:33 -11309.279694] SLOW spr round 30 (radius: 15) [00:59:41 -11309.279621] SLOW spr round 31 (radius: 20) [01:01:14 -11308.253701] SLOW spr round 32 (radius: 5) [01:02:18 -11308.253676] SLOW spr round 33 (radius: 10) [01:03:16 -11308.253666] SLOW spr round 34 (radius: 15) [01:04:24 -11306.569955] SLOW spr round 35 (radius: 5) [01:05:28 -11304.314573] SLOW spr round 36 (radius: 5) [01:06:26 -11304.314572] SLOW spr round 37 (radius: 10) [01:07:20 -11303.732230] SLOW spr round 38 (radius: 5) [01:08:21 -11303.732191] SLOW spr round 39 (radius: 10) [01:09:17 -11303.732191] SLOW spr round 40 (radius: 15) [01:10:24 -11303.732191] SLOW spr round 41 (radius: 20) [01:11:58 -11303.732191] SLOW spr round 42 (radius: 25) [01:13:51 -11298.169728] SLOW spr round 43 (radius: 5) [01:14:55 -11296.541583] SLOW spr round 44 (radius: 5) [01:15:54 -11293.295114] SLOW spr round 45 (radius: 5) [01:16:49 -11293.295114] SLOW spr round 46 (radius: 10) [01:17:41 -11293.295114] SLOW spr round 47 (radius: 15) [01:18:50 -11293.295114] SLOW spr round 48 (radius: 20) [01:20:20 -11293.295114] SLOW spr round 49 (radius: 25) [01:22:10 -11293.189697] SLOW spr round 50 (radius: 5) [01:23:14 -11293.143340] SLOW spr round 51 (radius: 10) [01:24:11 -11293.143340] SLOW spr round 52 (radius: 15) [01:25:17 -11293.143340] SLOW spr round 53 (radius: 20) [01:26:49 -11293.143340] SLOW spr round 54 (radius: 25) [01:28:38 -11293.143340] Model parameter optimization (eps = 0.100000) [01:28:40] ML tree search #2, logLikelihood: -11293.123838 [01:28:40 -49075.262785] Initial branch length optimization [01:28:41 -39827.802656] Model parameter optimization (eps = 10.000000) [01:28:51 -39795.082985] AUTODETECT spr round 1 (radius: 5) [01:29:38 -28973.446191] AUTODETECT spr round 2 (radius: 10) [01:30:29 -22087.053487] AUTODETECT spr round 3 (radius: 15) [01:31:27 -18861.436867] AUTODETECT spr round 4 (radius: 20) [01:32:29 -17202.312252] AUTODETECT spr round 5 (radius: 25) [01:33:42 -15731.542526] SPR radius for FAST iterations: 25 (autodetect) [01:33:42 -15731.542526] Model parameter optimization (eps = 3.000000) [01:33:56 -15627.692841] FAST spr round 1 (radius: 25) [01:34:49 -13039.853930] FAST spr round 2 (radius: 25) [01:35:38 -11811.439804] FAST spr round 3 (radius: 25) [01:36:25 -11588.143752] FAST spr round 4 (radius: 25) [01:37:12 -11539.545602] FAST spr round 5 (radius: 25) [01:37:58 -11526.360081] FAST spr round 6 (radius: 25) [01:38:44 -11525.252284] FAST spr round 7 (radius: 25) [01:39:29 -11525.252264] Model parameter optimization (eps = 1.000000) [01:39:35 -11522.517607] SLOW spr round 1 (radius: 5) [01:40:29 -11517.695786] SLOW spr round 2 (radius: 5) [01:41:22 -11517.302544] SLOW spr round 3 (radius: 5) [01:42:13 -11517.300308] SLOW spr round 4 (radius: 10) [01:43:05 -11514.432880] SLOW spr round 5 (radius: 5) [01:44:05 -11514.432725] SLOW spr round 6 (radius: 10) [01:45:00 -11514.432712] SLOW spr round 7 (radius: 15) [01:46:04 -11500.907019] SLOW spr round 8 (radius: 5) [01:47:08 -11476.953670] SLOW spr round 9 (radius: 5) [01:48:09 -11442.238187] SLOW spr round 10 (radius: 5) [01:49:04 -11442.095142] SLOW spr round 11 (radius: 5) [01:49:57 -11442.093042] SLOW spr round 12 (radius: 10) [01:50:49 -11439.307848] SLOW spr round 13 (radius: 5) [01:51:51 -11439.211511] SLOW spr round 14 (radius: 10) [01:52:47 -11439.211216] SLOW spr round 15 (radius: 15) [01:53:53 -11439.068514] SLOW spr round 16 (radius: 5) [01:54:57 -11439.068497] SLOW spr round 17 (radius: 10) [01:55:54 -11439.068497] SLOW spr round 18 (radius: 15) [01:57:00 -11439.068497] SLOW spr round 19 (radius: 20) [01:58:19 -11438.687238] SLOW spr round 20 (radius: 5) [01:59:23 -11438.687238] SLOW spr round 21 (radius: 10) [02:00:22 -11438.687238] SLOW spr round 22 (radius: 15) [02:01:28 -11438.687238] SLOW spr round 23 (radius: 20) [02:02:47 -11438.687238] SLOW spr round 24 (radius: 25) [02:04:09 -11438.687238] Model parameter optimization (eps = 0.100000) [02:04:11] ML tree search #3, logLikelihood: -11438.630899 [02:04:11 -49429.968837] Initial branch length optimization [02:04:12 -40037.071017] Model parameter optimization (eps = 10.000000) [02:04:27 -39513.618395] AUTODETECT spr round 1 (radius: 5) [02:05:14 -29351.923754] AUTODETECT spr round 2 (radius: 10) [02:06:08 -22093.966042] AUTODETECT spr round 3 (radius: 15) [02:07:06 -19178.691562] AUTODETECT spr round 4 (radius: 20) [02:08:14 -16507.332793] AUTODETECT spr round 5 (radius: 25) [02:09:23 -14381.770580] SPR radius for FAST iterations: 25 (autodetect) [02:09:23 -14381.770580] Model parameter optimization (eps = 3.000000) [02:09:35 -14271.847482] FAST spr round 1 (radius: 25) [02:10:29 -11963.539895] FAST spr round 2 (radius: 25) [02:11:20 -11722.849203] FAST spr round 3 (radius: 25) [02:12:09 -11679.479370] FAST spr round 4 (radius: 25) [02:12:56 -11676.786796] FAST spr round 5 (radius: 25) [02:13:43 -11676.780358] Model parameter optimization (eps = 1.000000) [02:13:46 -11676.370537] SLOW spr round 1 (radius: 5) [02:14:40 -11672.855381] SLOW spr round 2 (radius: 5) [02:15:32 -11672.823952] SLOW spr round 3 (radius: 10) [02:16:24 -11671.368327] SLOW spr round 4 (radius: 5) [02:17:24 -11670.422665] SLOW spr round 5 (radius: 5) [02:18:19 -11670.422485] SLOW spr round 6 (radius: 10) [02:19:11 -11670.422483] SLOW spr round 7 (radius: 15) [02:20:16 -11666.704619] SLOW spr round 8 (radius: 5) [02:21:18 -11659.902838] SLOW spr round 9 (radius: 5) [02:22:14 -11659.902660] SLOW spr round 10 (radius: 10) [02:23:07 -11659.902638] SLOW spr round 11 (radius: 15) [02:24:12 -11658.868478] SLOW spr round 12 (radius: 5) [02:25:12 -11658.868465] SLOW spr round 13 (radius: 10) [02:26:08 -11658.868465] SLOW spr round 14 (radius: 15) [02:27:11 -11658.868465] SLOW spr round 15 (radius: 20) [02:28:28 -11657.763601] SLOW spr round 16 (radius: 5) [02:29:30 -11657.763351] SLOW spr round 17 (radius: 10) [02:30:26 -11657.763347] SLOW spr round 18 (radius: 15) [02:31:29 -11657.763347] SLOW spr round 19 (radius: 20) [02:32:48 -11657.559354] SLOW spr round 20 (radius: 5) [02:33:51 -11655.892327] SLOW spr round 21 (radius: 5) [02:34:49 -11655.557521] SLOW spr round 22 (radius: 5) [02:35:44 -11649.538074] SLOW spr round 23 (radius: 5) [02:36:37 -11649.538034] SLOW spr round 24 (radius: 10) [02:37:30 -11649.538033] SLOW spr round 25 (radius: 15) [02:38:36 -11649.538033] SLOW spr round 26 (radius: 20) [02:39:51 -11649.403619] SLOW spr round 27 (radius: 5) [02:40:52 -11649.403538] SLOW spr round 28 (radius: 10) [02:41:48 -11649.403538] SLOW spr round 29 (radius: 15) [02:42:50 -11648.857176] SLOW spr round 30 (radius: 5) [02:43:50 -11648.855220] SLOW spr round 31 (radius: 10) [02:44:47 -11648.855178] SLOW spr round 32 (radius: 15) [02:45:50 -11648.855177] SLOW spr round 33 (radius: 20) [02:47:06 -11648.855177] SLOW spr round 34 (radius: 25) [02:48:30 -11572.611535] SLOW spr round 35 (radius: 5) [02:49:33 -11502.477796] SLOW spr round 36 (radius: 5) [02:50:29 -11500.687893] SLOW spr round 37 (radius: 5) [02:51:23 -11493.050205] SLOW spr round 38 (radius: 5) [02:52:16 -11482.115911] SLOW spr round 39 (radius: 5) [02:53:06 -11482.115911] SLOW spr round 40 (radius: 10) [02:53:57 -11477.439019] SLOW spr round 41 (radius: 5) [02:54:56 -11477.437776] SLOW spr round 42 (radius: 10) [02:55:49 -11477.437299] SLOW spr round 43 (radius: 15) [02:56:51 -11477.195894] SLOW spr round 44 (radius: 5) [02:57:51 -11477.195893] SLOW spr round 45 (radius: 10) [02:58:46 -11477.195893] SLOW spr round 46 (radius: 15) [02:59:48 -11477.195893] SLOW spr round 47 (radius: 20) [03:01:03 -11477.195893] SLOW spr round 48 (radius: 25) [03:02:25 -11476.998307] SLOW spr round 49 (radius: 5) [03:03:27 -11476.998254] SLOW spr round 50 (radius: 10) [03:04:23 -11476.998253] SLOW spr round 51 (radius: 15) [03:05:24 -11476.998253] SLOW spr round 52 (radius: 20) [03:06:40 -11476.998253] SLOW spr round 53 (radius: 25) [03:08:02 -11476.998253] Model parameter optimization (eps = 0.100000) [03:08:05] ML tree search #4, logLikelihood: -11476.973747 [03:08:05 -49364.866342] Initial branch length optimization [03:08:06 -40093.680510] Model parameter optimization (eps = 10.000000) [03:08:17 -40050.774450] AUTODETECT spr round 1 (radius: 5) [03:09:03 -28505.660087] AUTODETECT spr round 2 (radius: 10) [03:09:55 -21859.082019] AUTODETECT spr round 3 (radius: 15) [03:10:54 -17807.640811] AUTODETECT spr round 4 (radius: 20) [03:11:55 -16730.037742] AUTODETECT spr round 5 (radius: 25) [03:12:58 -16150.685863] SPR radius for FAST iterations: 25 (autodetect) [03:12:58 -16150.685863] Model parameter optimization (eps = 3.000000) [03:13:07 -16042.351062] FAST spr round 1 (radius: 25) [03:14:02 -13858.642297] FAST spr round 2 (radius: 25) [03:14:53 -13466.728065] FAST spr round 3 (radius: 25) [03:15:41 -12828.169940] FAST spr round 4 (radius: 25) [03:16:30 -12647.006573] FAST spr round 5 (radius: 25) [03:17:19 -12555.973966] FAST spr round 6 (radius: 25) [03:18:06 -12490.830540] FAST spr round 7 (radius: 25) [03:18:52 -12474.023871] FAST spr round 8 (radius: 25) [03:19:38 -12473.140584] FAST spr round 9 (radius: 25) [03:20:24 -12473.139999] Model parameter optimization (eps = 1.000000) [03:20:28 -12472.404120] SLOW spr round 1 (radius: 5) [03:21:21 -12469.425219] SLOW spr round 2 (radius: 5) [03:22:13 -12469.417150] SLOW spr round 3 (radius: 10) [03:23:04 -12465.500003] SLOW spr round 4 (radius: 5) [03:24:05 -12460.454718] SLOW spr round 5 (radius: 5) [03:25:01 -12460.445276] SLOW spr round 6 (radius: 10) [03:25:53 -12460.445134] SLOW spr round 7 (radius: 15) [03:27:01 -12435.240846] SLOW spr round 8 (radius: 5) [03:28:03 -12285.078194] SLOW spr round 9 (radius: 5) [03:29:00 -12259.658674] SLOW spr round 10 (radius: 5) [03:29:55 -12259.278456] SLOW spr round 11 (radius: 5) [03:30:47 -12259.278157] SLOW spr round 12 (radius: 10) [03:31:39 -12259.278148] SLOW spr round 13 (radius: 15) [03:32:50 -12139.978100] SLOW spr round 14 (radius: 5) [03:33:53 -12111.829648] SLOW spr round 15 (radius: 5) [03:34:51 -12102.471505] SLOW spr round 16 (radius: 5) [03:35:45 -12102.471420] SLOW spr round 17 (radius: 10) [03:36:37 -12102.463866] SLOW spr round 18 (radius: 15) [03:37:50 -11841.343399] SLOW spr round 19 (radius: 5) [03:38:55 -11638.883825] SLOW spr round 20 (radius: 5) [03:39:57 -11575.802943] SLOW spr round 21 (radius: 5) [03:40:55 -11563.154840] SLOW spr round 22 (radius: 5) [03:41:50 -11563.153431] SLOW spr round 23 (radius: 10) [03:42:45 -11562.174354] SLOW spr round 24 (radius: 5) [03:43:50 -11561.275021] SLOW spr round 25 (radius: 5) [03:44:50 -11561.267891] SLOW spr round 26 (radius: 10) [03:45:45 -11559.801048] SLOW spr round 27 (radius: 5) [03:46:50 -11544.816685] SLOW spr round 28 (radius: 5) [03:47:49 -11544.816644] SLOW spr round 29 (radius: 10) [03:48:44 -11544.816599] SLOW spr round 30 (radius: 15) [03:49:57 -11542.250800] SLOW spr round 31 (radius: 5) [03:51:03 -11541.959183] SLOW spr round 32 (radius: 5) [03:52:04 -11541.959092] SLOW spr round 33 (radius: 10) [03:53:00 -11541.959048] SLOW spr round 34 (radius: 15) [03:54:14 -11541.959004] SLOW spr round 35 (radius: 20) [03:55:47 -11509.486109] SLOW spr round 36 (radius: 5) [03:56:54 -11358.841355] SLOW spr round 37 (radius: 5) [03:57:56 -11324.131145] SLOW spr round 38 (radius: 5) [03:58:53 -11323.468625] SLOW spr round 39 (radius: 5) [03:59:46 -11323.468379] SLOW spr round 40 (radius: 10) [04:00:39 -11323.059155] SLOW spr round 41 (radius: 5) [04:01:40 -11322.774394] SLOW spr round 42 (radius: 5) [04:02:38 -11322.774394] SLOW spr round 43 (radius: 10) [04:03:31 -11322.774394] SLOW spr round 44 (radius: 15) [04:04:41 -11322.767640] SLOW spr round 45 (radius: 20) [04:06:07 -11321.884376] SLOW spr round 46 (radius: 5) [04:07:11 -11302.710197] SLOW spr round 47 (radius: 5) [04:08:10 -11302.704458] SLOW spr round 48 (radius: 10) [04:09:03 -11302.704452] SLOW spr round 49 (radius: 15) [04:10:12 -11302.704451] SLOW spr round 50 (radius: 20) [04:11:39 -11302.704451] SLOW spr round 51 (radius: 25) [04:13:15 -11300.721143] SLOW spr round 52 (radius: 5) [04:14:19 -11300.720981] SLOW spr round 53 (radius: 10) [04:15:16 -11300.720979] SLOW spr round 54 (radius: 15) [04:16:23 -11300.720979] SLOW spr round 55 (radius: 20) [04:17:49 -11300.720979] SLOW spr round 56 (radius: 25) [04:19:25 -11300.720979] Model parameter optimization (eps = 0.100000) [04:19:32] ML tree search #5, logLikelihood: -11299.063946 [04:19:32 -49096.378901] Initial branch length optimization [04:19:33 -39839.758298] Model parameter optimization (eps = 10.000000) [04:19:45 -39692.033539] AUTODETECT spr round 1 (radius: 5) [04:20:32 -29378.223000] AUTODETECT spr round 2 (radius: 10) [04:21:26 -22258.916467] AUTODETECT spr round 3 (radius: 15) [04:22:28 -18055.620334] AUTODETECT spr round 4 (radius: 20) [04:23:43 -15429.744587] AUTODETECT spr round 5 (radius: 25) [04:24:50 -14417.927143] SPR radius for FAST iterations: 25 (autodetect) [04:24:50 -14417.927143] Model parameter optimization (eps = 3.000000) [04:25:03 -14289.533609] FAST spr round 1 (radius: 25) [04:25:57 -11683.014515] FAST spr round 2 (radius: 25) [04:26:46 -11353.691708] FAST spr round 3 (radius: 25) [04:27:34 -11264.539815] FAST spr round 4 (radius: 25) [04:28:21 -11260.106675] FAST spr round 5 (radius: 25) [04:29:06 -11259.532309] FAST spr round 6 (radius: 25) [04:29:52 -11258.408866] FAST spr round 7 (radius: 25) [04:30:37 -11258.408852] Model parameter optimization (eps = 1.000000) [04:30:47 -11256.935231] SLOW spr round 1 (radius: 5) [04:31:39 -11254.175668] SLOW spr round 2 (radius: 5) [04:32:30 -11252.150416] SLOW spr round 3 (radius: 5) [04:33:20 -11252.150072] SLOW spr round 4 (radius: 10) [04:34:11 -11250.453748] SLOW spr round 5 (radius: 5) [04:35:11 -11241.740807] SLOW spr round 6 (radius: 5) [04:36:06 -11241.693597] SLOW spr round 7 (radius: 10) [04:36:58 -11238.513435] SLOW spr round 8 (radius: 5) [04:37:57 -11235.017937] SLOW spr round 9 (radius: 5) [04:38:52 -11234.996904] SLOW spr round 10 (radius: 10) [04:39:43 -11234.911221] SLOW spr round 11 (radius: 15) [04:40:47 -11234.874945] SLOW spr round 12 (radius: 20) [04:42:05 -11227.011502] SLOW spr round 13 (radius: 5) [04:43:07 -11225.869017] SLOW spr round 14 (radius: 5) [04:44:03 -11225.444559] SLOW spr round 15 (radius: 5) [04:44:56 -11225.444496] SLOW spr round 16 (radius: 10) [04:45:48 -11225.366572] SLOW spr round 17 (radius: 15) [04:46:52 -11224.942724] SLOW spr round 18 (radius: 5) [04:47:52 -11224.942411] SLOW spr round 19 (radius: 10) [04:48:47 -11224.942348] SLOW spr round 20 (radius: 15) [04:49:49 -11224.942333] SLOW spr round 21 (radius: 20) [04:51:05 -11224.897397] SLOW spr round 22 (radius: 25) [04:52:30 -11224.503054] SLOW spr round 23 (radius: 5) [04:53:31 -11221.551337] SLOW spr round 24 (radius: 5) [04:54:27 -11221.551136] SLOW spr round 25 (radius: 10) [04:55:19 -11221.472761] SLOW spr round 26 (radius: 15) [04:56:22 -11221.472745] SLOW spr round 27 (radius: 20) [04:57:38 -11221.472740] SLOW spr round 28 (radius: 25) [04:59:02 -11221.472738] Model parameter optimization (eps = 0.100000) [04:59:06] ML tree search #6, logLikelihood: -11221.443239 [04:59:06 -49030.386207] Initial branch length optimization [04:59:07 -39903.845395] Model parameter optimization (eps = 10.000000) [04:59:16 -39864.996452] AUTODETECT spr round 1 (radius: 5) [05:00:02 -28385.161179] AUTODETECT spr round 2 (radius: 10) [05:00:53 -22382.355064] AUTODETECT spr round 3 (radius: 15) [05:01:50 -19346.132282] AUTODETECT spr round 4 (radius: 20) [05:02:50 -17836.326363] AUTODETECT spr round 5 (radius: 25) [05:03:59 -16762.936937] SPR radius for FAST iterations: 25 (autodetect) [05:03:59 -16762.936937] Model parameter optimization (eps = 3.000000) [05:04:11 -16668.768878] FAST spr round 1 (radius: 25) [05:05:06 -12589.751970] FAST spr round 2 (radius: 25) [05:05:56 -11675.979751] FAST spr round 3 (radius: 25) [05:06:46 -11369.480652] FAST spr round 4 (radius: 25) [05:07:34 -11317.314756] FAST spr round 5 (radius: 25) [05:08:20 -11312.888024] FAST spr round 6 (radius: 25) [05:09:05 -11312.887130] Model parameter optimization (eps = 1.000000) [05:09:11 -11311.047061] SLOW spr round 1 (radius: 5) [05:10:04 -11307.621512] SLOW spr round 2 (radius: 5) [05:10:57 -11307.539178] SLOW spr round 3 (radius: 10) [05:11:48 -11307.031037] SLOW spr round 4 (radius: 5) [05:12:48 -11306.024200] SLOW spr round 5 (radius: 5) [05:13:44 -11306.023915] SLOW spr round 6 (radius: 10) [05:14:36 -11306.023907] SLOW spr round 7 (radius: 15) [05:15:44 -11294.709423] SLOW spr round 8 (radius: 5) [05:16:48 -11270.635157] SLOW spr round 9 (radius: 5) [05:17:45 -11228.875824] SLOW spr round 10 (radius: 5) [05:18:39 -11228.875446] SLOW spr round 11 (radius: 10) [05:19:30 -11228.875422] SLOW spr round 12 (radius: 15) [05:20:39 -11226.898384] SLOW spr round 13 (radius: 5) [05:21:41 -11226.898372] SLOW spr round 14 (radius: 10) [05:22:37 -11226.898368] SLOW spr round 15 (radius: 15) [05:23:43 -11226.898363] SLOW spr round 16 (radius: 20) [05:25:08 -11226.236496] SLOW spr round 17 (radius: 5) [05:26:12 -11226.188469] SLOW spr round 18 (radius: 10) [05:27:09 -11226.188451] SLOW spr round 19 (radius: 15) [05:28:15 -11226.188445] SLOW spr round 20 (radius: 20) [05:29:41 -11226.188439] SLOW spr round 21 (radius: 25) [05:31:16 -11225.844775] SLOW spr round 22 (radius: 5) [05:32:21 -11222.614404] SLOW spr round 23 (radius: 5) [05:33:19 -11222.614396] SLOW spr round 24 (radius: 10) [05:34:13 -11221.917520] SLOW spr round 25 (radius: 5) [05:35:14 -11221.917511] SLOW spr round 26 (radius: 10) [05:36:09 -11221.917505] SLOW spr round 27 (radius: 15) [05:37:15 -11220.857680] SLOW spr round 28 (radius: 5) [05:38:18 -11220.857634] SLOW spr round 29 (radius: 10) [05:39:15 -11220.857628] SLOW spr round 30 (radius: 15) [05:40:21 -11220.857622] SLOW spr round 31 (radius: 20) [05:41:43 -11220.857616] SLOW spr round 32 (radius: 25) [05:43:12 -11220.857610] Model parameter optimization (eps = 0.100000) [05:43:15] ML tree search #7, logLikelihood: -11220.777996 [05:43:15 -49478.234428] Initial branch length optimization [05:43:16 -40071.124626] Model parameter optimization (eps = 10.000000) [05:43:24 -40053.916578] AUTODETECT spr round 1 (radius: 5) [05:44:12 -28914.223723] AUTODETECT spr round 2 (radius: 10) [05:45:04 -22110.602318] AUTODETECT spr round 3 (radius: 15) [05:46:03 -18581.740225] AUTODETECT spr round 4 (radius: 20) [05:47:08 -16366.341782] AUTODETECT spr round 5 (radius: 25) [05:48:19 -15572.495615] SPR radius for FAST iterations: 25 (autodetect) [05:48:19 -15572.495615] Model parameter optimization (eps = 3.000000) [05:48:31 -15517.593180] FAST spr round 1 (radius: 25) [05:49:26 -12310.781957] FAST spr round 2 (radius: 25) [05:50:16 -11436.530093] FAST spr round 3 (radius: 25) [05:51:07 -11264.925160] FAST spr round 4 (radius: 25) [05:51:55 -11241.963279] FAST spr round 5 (radius: 25) [05:52:41 -11241.963130] Model parameter optimization (eps = 1.000000) [05:52:49 -11230.542229] SLOW spr round 1 (radius: 5) [05:53:45 -11223.623328] SLOW spr round 2 (radius: 5) [05:54:39 -11221.966398] SLOW spr round 3 (radius: 5) [05:55:32 -11221.965019] SLOW spr round 4 (radius: 10) [05:56:26 -11221.577933] SLOW spr round 5 (radius: 5) [05:57:30 -11217.142407] SLOW spr round 6 (radius: 5) [05:58:28 -11217.141671] SLOW spr round 7 (radius: 10) [05:59:23 -11214.792303] SLOW spr round 8 (radius: 5) [06:00:25 -11214.790061] SLOW spr round 9 (radius: 10) [06:01:22 -11210.227464] SLOW spr round 10 (radius: 5) [06:02:25 -11210.221064] SLOW spr round 11 (radius: 10) [06:03:22 -11210.037727] SLOW spr round 12 (radius: 5) [06:04:25 -11207.821514] SLOW spr round 13 (radius: 5) [06:05:22 -11207.821329] SLOW spr round 14 (radius: 10) [06:06:17 -11207.821285] SLOW spr round 15 (radius: 15) [06:07:27 -11201.673572] SLOW spr round 16 (radius: 5) [06:08:32 -11201.673519] SLOW spr round 17 (radius: 10) [06:09:30 -11201.673512] SLOW spr round 18 (radius: 15) [06:10:38 -11201.277215] SLOW spr round 19 (radius: 5) [06:11:43 -11201.277210] SLOW spr round 20 (radius: 10) [06:12:41 -11201.277205] SLOW spr round 21 (radius: 15) [06:13:48 -11201.277180] SLOW spr round 22 (radius: 20) [06:15:21 -11199.533472] SLOW spr round 23 (radius: 5) [06:16:26 -11199.532825] SLOW spr round 24 (radius: 10) [06:17:25 -11199.532819] SLOW spr round 25 (radius: 15) [06:18:33 -11199.532814] SLOW spr round 26 (radius: 20) [06:20:05 -11199.242933] SLOW spr round 27 (radius: 5) [06:21:11 -11199.242829] SLOW spr round 28 (radius: 10) [06:22:10 -11199.242820] SLOW spr round 29 (radius: 15) [06:23:18 -11199.242814] SLOW spr round 30 (radius: 20) [06:24:51 -11199.242808] SLOW spr round 31 (radius: 25) [06:26:30 -11198.148350] SLOW spr round 32 (radius: 5) [06:27:35 -11198.032133] SLOW spr round 33 (radius: 5) [06:28:35 -11198.031425] SLOW spr round 34 (radius: 10) [06:29:30 -11198.031404] SLOW spr round 35 (radius: 15) [06:30:38 -11198.031397] SLOW spr round 36 (radius: 20) [06:32:05 -11197.193016] SLOW spr round 37 (radius: 5) [06:33:10 -11196.945253] SLOW spr round 38 (radius: 5) [06:34:10 -11196.944820] SLOW spr round 39 (radius: 10) [06:35:04 -11196.944811] SLOW spr round 40 (radius: 15) [06:36:13 -11196.944804] SLOW spr round 41 (radius: 20) [06:37:39 -11196.944797] SLOW spr round 42 (radius: 25) [06:39:06 -11196.944790] Model parameter optimization (eps = 0.100000) [06:39:10] ML tree search #8, logLikelihood: -11196.784358 [06:39:10 -49470.774113] Initial branch length optimization [06:39:11 -39981.014723] Model parameter optimization (eps = 10.000000) [06:39:23 -39922.196189] AUTODETECT spr round 1 (radius: 5) [06:40:10 -29717.336817] AUTODETECT spr round 2 (radius: 10) [06:41:02 -22151.776495] AUTODETECT spr round 3 (radius: 15) [06:42:00 -17726.785167] AUTODETECT spr round 4 (radius: 20) [06:43:02 -15726.345019] AUTODETECT spr round 5 (radius: 25) [06:44:10 -15256.071380] SPR radius for FAST iterations: 25 (autodetect) [06:44:10 -15256.071380] Model parameter optimization (eps = 3.000000) [06:44:22 -15160.494413] FAST spr round 1 (radius: 25) [06:45:23 -13019.348677] FAST spr round 2 (radius: 25) [06:46:18 -12616.185425] FAST spr round 3 (radius: 25) [06:47:12 -12063.143491] FAST spr round 4 (radius: 25) [06:48:05 -11755.589058] FAST spr round 5 (radius: 25) [06:48:56 -11715.605637] FAST spr round 6 (radius: 25) [06:49:44 -11690.839209] FAST spr round 7 (radius: 25) [06:50:31 -11690.839109] Model parameter optimization (eps = 1.000000) [06:50:38 -11689.480430] SLOW spr round 1 (radius: 5) [06:51:35 -11685.244222] SLOW spr round 2 (radius: 5) [06:52:30 -11684.345236] SLOW spr round 3 (radius: 5) [06:53:23 -11684.345136] SLOW spr round 4 (radius: 10) [06:54:18 -11661.719553] SLOW spr round 5 (radius: 5) [06:55:23 -11656.091774] SLOW spr round 6 (radius: 5) [06:56:23 -11649.441698] SLOW spr round 7 (radius: 5) [06:57:19 -11649.441578] SLOW spr round 8 (radius: 10) [06:58:14 -11584.585957] SLOW spr round 9 (radius: 5) [06:59:16 -11533.746177] SLOW spr round 10 (radius: 5) [07:00:14 -11515.873593] SLOW spr round 11 (radius: 5) [07:01:08 -11514.997047] SLOW spr round 12 (radius: 5) [07:01:59 -11514.995207] SLOW spr round 13 (radius: 10) [07:02:52 -11512.174048] SLOW spr round 14 (radius: 5) [07:03:54 -11509.987842] SLOW spr round 15 (radius: 5) [07:04:51 -11509.986725] SLOW spr round 16 (radius: 10) [07:05:44 -11509.896600] SLOW spr round 17 (radius: 15) [07:06:51 -11499.404702] SLOW spr round 18 (radius: 5) [07:07:56 -11495.537426] SLOW spr round 19 (radius: 5) [07:08:54 -11495.537285] SLOW spr round 20 (radius: 10) [07:09:49 -11495.537285] SLOW spr round 21 (radius: 15) [07:10:55 -11495.537283] SLOW spr round 22 (radius: 20) [07:12:21 -11437.176261] SLOW spr round 23 (radius: 5) [07:13:28 -11282.592158] SLOW spr round 24 (radius: 5) [07:14:33 -11245.022763] SLOW spr round 25 (radius: 5) [07:15:32 -11244.135119] SLOW spr round 26 (radius: 5) [07:16:27 -11244.134898] SLOW spr round 27 (radius: 10) [07:17:22 -11241.323183] SLOW spr round 28 (radius: 5) [07:18:27 -11241.190630] SLOW spr round 29 (radius: 5) [07:19:26 -11241.188766] SLOW spr round 30 (radius: 10) [07:20:21 -11241.188574] SLOW spr round 31 (radius: 15) [07:21:32 -11239.016475] SLOW spr round 32 (radius: 5) [07:22:41 -11238.967546] SLOW spr round 33 (radius: 10) [07:23:43 -11235.698982] SLOW spr round 34 (radius: 5) [07:24:50 -11230.339120] SLOW spr round 35 (radius: 5) [07:25:51 -11227.944843] SLOW spr round 36 (radius: 5) [07:26:47 -11227.943832] SLOW spr round 37 (radius: 10) [07:27:43 -11227.943719] SLOW spr round 38 (radius: 15) [07:28:56 -11227.943701] SLOW spr round 39 (radius: 20) [07:30:22 -11227.263489] SLOW spr round 40 (radius: 5) [07:31:32 -11227.108443] SLOW spr round 41 (radius: 5) [07:32:35 -11227.108287] SLOW spr round 42 (radius: 10) [07:33:32 -11226.101968] SLOW spr round 43 (radius: 5) [07:34:37 -11226.101780] SLOW spr round 44 (radius: 10) [07:35:35 -11226.101672] SLOW spr round 45 (radius: 15) [07:36:44 -11226.101608] SLOW spr round 46 (radius: 20) [07:38:11 -11225.675731] SLOW spr round 47 (radius: 5) [07:39:19 -11225.675588] SLOW spr round 48 (radius: 10) [07:40:20 -11225.675572] SLOW spr round 49 (radius: 15) [07:41:29 -11225.675562] SLOW spr round 50 (radius: 20) [07:42:56 -11225.675556] SLOW spr round 51 (radius: 25) [07:44:37 -11223.363320] SLOW spr round 52 (radius: 5) [07:45:46 -11222.912704] SLOW spr round 53 (radius: 5) [07:46:48 -11222.912697] SLOW spr round 54 (radius: 10) [07:47:45 -11222.912697] SLOW spr round 55 (radius: 15) [07:48:54 -11221.255593] SLOW spr round 56 (radius: 5) [07:50:00 -11221.161891] SLOW spr round 57 (radius: 10) [07:50:58 -11221.160802] SLOW spr round 58 (radius: 15) [07:52:05 -11221.160751] SLOW spr round 59 (radius: 20) [07:53:29 -11220.952576] SLOW spr round 60 (radius: 5) [07:54:34 -11220.952553] SLOW spr round 61 (radius: 10) [07:55:33 -11220.952553] SLOW spr round 62 (radius: 15) [07:56:39 -11220.952553] SLOW spr round 63 (radius: 20) [07:58:03 -11220.952553] SLOW spr round 64 (radius: 25) [07:59:39 -11220.952553] Model parameter optimization (eps = 0.100000) [07:59:44] ML tree search #9, logLikelihood: -11220.039215 [07:59:44 -48642.646639] Initial branch length optimization [07:59:44 -39591.085437] Model parameter optimization (eps = 10.000000) [08:00:05 -39123.951980] AUTODETECT spr round 1 (radius: 5) [08:00:51 -29310.783201] AUTODETECT spr round 2 (radius: 10) [08:01:46 -22015.636078] AUTODETECT spr round 3 (radius: 15) [08:02:42 -18400.197672] AUTODETECT spr round 4 (radius: 20) [08:03:43 -16185.450014] AUTODETECT spr round 5 (radius: 25) [08:04:47 -15245.326397] SPR radius for FAST iterations: 25 (autodetect) [08:04:47 -15245.326397] Model parameter optimization (eps = 3.000000) [08:05:01 -15163.246557] FAST spr round 1 (radius: 25) [08:05:55 -12322.449903] FAST spr round 2 (radius: 25) [08:06:44 -11712.314088] FAST spr round 3 (radius: 25) [08:07:33 -11463.980198] FAST spr round 4 (radius: 25) [08:08:21 -11406.383585] FAST spr round 5 (radius: 25) [08:09:07 -11402.596962] FAST spr round 6 (radius: 25) [08:09:52 -11402.596936] Model parameter optimization (eps = 1.000000) [08:09:58 -11398.066484] SLOW spr round 1 (radius: 5) [08:10:50 -11395.245211] SLOW spr round 2 (radius: 5) [08:11:43 -11394.510412] SLOW spr round 3 (radius: 5) [08:12:33 -11394.510306] SLOW spr round 4 (radius: 10) [08:13:26 -11360.520730] SLOW spr round 5 (radius: 5) [08:14:25 -11293.785880] SLOW spr round 6 (radius: 5) [08:15:22 -11285.824366] SLOW spr round 7 (radius: 5) [08:16:15 -11283.755170] SLOW spr round 8 (radius: 5) [08:17:08 -11283.440846] SLOW spr round 9 (radius: 5) [08:17:59 -11282.755198] SLOW spr round 10 (radius: 5) [08:18:50 -11282.752170] SLOW spr round 11 (radius: 10) [08:19:41 -11277.440664] SLOW spr round 12 (radius: 5) [08:20:41 -11277.368339] SLOW spr round 13 (radius: 10) [08:21:35 -11275.070899] SLOW spr round 14 (radius: 5) [08:22:34 -11274.127661] SLOW spr round 15 (radius: 5) [08:23:28 -11274.127466] SLOW spr round 16 (radius: 10) [08:24:20 -11274.127429] SLOW spr round 17 (radius: 15) [08:25:27 -11271.153824] SLOW spr round 18 (radius: 5) [08:26:28 -11271.153108] SLOW spr round 19 (radius: 10) [08:27:22 -11271.153022] SLOW spr round 20 (radius: 15) [08:28:27 -11269.065158] SLOW spr round 21 (radius: 5) [08:29:27 -11269.065153] SLOW spr round 22 (radius: 10) [08:30:22 -11269.065151] SLOW spr round 23 (radius: 15) [08:31:26 -11268.130644] SLOW spr round 24 (radius: 5) [08:32:27 -11268.130619] SLOW spr round 25 (radius: 10) [08:33:22 -11268.130619] SLOW spr round 26 (radius: 15) [08:34:26 -11268.130616] SLOW spr round 27 (radius: 20) [08:35:48 -11267.831729] SLOW spr round 28 (radius: 5) [08:36:50 -11267.831729] SLOW spr round 29 (radius: 10) [08:37:45 -11267.831729] SLOW spr round 30 (radius: 15) [08:38:49 -11267.831729] SLOW spr round 31 (radius: 20) [08:40:11 -11267.831729] SLOW spr round 32 (radius: 25) [08:41:47 -11228.830363] SLOW spr round 33 (radius: 5) [08:42:48 -11228.829626] SLOW spr round 34 (radius: 10) [08:43:44 -11228.829222] SLOW spr round 35 (radius: 15) [08:44:47 -11228.829220] SLOW spr round 36 (radius: 20) [08:46:09 -11228.829103] SLOW spr round 37 (radius: 25) [08:47:44 -11228.595396] SLOW spr round 38 (radius: 5) [08:48:45 -11228.594835] SLOW spr round 39 (radius: 10) [08:49:40 -11228.594833] SLOW spr round 40 (radius: 15) [08:50:44 -11228.593993] SLOW spr round 41 (radius: 20) [08:52:05 -11228.593993] SLOW spr round 42 (radius: 25) [08:53:39 -11228.593993] Model parameter optimization (eps = 0.100000) [08:53:44] ML tree search #10, logLikelihood: -11227.957780 [08:53:45 -49310.977108] Initial branch length optimization [08:53:45 -40005.903026] Model parameter optimization (eps = 10.000000) [08:53:58 -39974.742967] AUTODETECT spr round 1 (radius: 5) [08:54:45 -28891.399867] AUTODETECT spr round 2 (radius: 10) [08:55:37 -21239.483776] AUTODETECT spr round 3 (radius: 15) [08:56:36 -17964.318063] AUTODETECT spr round 4 (radius: 20) [08:57:45 -16837.083208] AUTODETECT spr round 5 (radius: 25) [08:59:00 -15705.093659] SPR radius for FAST iterations: 25 (autodetect) [08:59:00 -15705.093659] Model parameter optimization (eps = 3.000000) [08:59:14 -15646.659738] FAST spr round 1 (radius: 25) [09:00:11 -12481.144946] FAST spr round 2 (radius: 25) [09:01:04 -12006.772546] FAST spr round 3 (radius: 25) [09:01:56 -11656.589511] FAST spr round 4 (radius: 25) [09:02:46 -11525.480078] FAST spr round 5 (radius: 25) [09:03:34 -11517.057866] FAST spr round 6 (radius: 25) [09:04:21 -11504.112624] FAST spr round 7 (radius: 25) [09:05:07 -11502.356561] FAST spr round 8 (radius: 25) [09:05:54 -11502.356351] Model parameter optimization (eps = 1.000000) [09:06:05 -11493.958804] SLOW spr round 1 (radius: 5) [09:06:59 -11484.007123] SLOW spr round 2 (radius: 5) [09:07:53 -11481.081168] SLOW spr round 3 (radius: 5) [09:08:44 -11481.079314] SLOW spr round 4 (radius: 10) [09:09:40 -11456.302464] SLOW spr round 5 (radius: 5) [09:10:42 -11399.383318] SLOW spr round 6 (radius: 5) [09:11:40 -11397.346517] SLOW spr round 7 (radius: 5) [09:12:33 -11397.027386] SLOW spr round 8 (radius: 5) [09:13:26 -11397.027049] SLOW spr round 9 (radius: 10) [09:14:20 -11387.523341] SLOW spr round 10 (radius: 5) [09:15:22 -11384.577014] SLOW spr round 11 (radius: 5) [09:16:19 -11384.577013] SLOW spr round 12 (radius: 10) [09:17:13 -11382.585508] SLOW spr round 13 (radius: 5) [09:18:14 -11382.122764] SLOW spr round 14 (radius: 5) [09:19:10 -11382.122759] SLOW spr round 15 (radius: 10) [09:20:03 -11382.122758] SLOW spr round 16 (radius: 15) [09:21:12 -11342.249824] SLOW spr round 17 (radius: 5) [09:22:16 -11326.569573] SLOW spr round 18 (radius: 5) [09:23:16 -11295.358421] SLOW spr round 19 (radius: 5) [09:24:12 -11235.605458] SLOW spr round 20 (radius: 5) [09:25:07 -11222.369610] SLOW spr round 21 (radius: 5) [09:26:00 -11222.369588] SLOW spr round 22 (radius: 10) [09:26:53 -11222.066078] SLOW spr round 23 (radius: 5) [09:27:56 -11222.066078] SLOW spr round 24 (radius: 10) [09:28:53 -11221.354404] SLOW spr round 25 (radius: 5) [09:29:54 -11221.354404] SLOW spr round 26 (radius: 10) [09:30:50 -11221.354403] SLOW spr round 27 (radius: 15) [09:31:56 -11221.354403] SLOW spr round 28 (radius: 20) [09:33:22 -11217.285235] SLOW spr round 29 (radius: 5) [09:34:27 -11217.274459] SLOW spr round 30 (radius: 10) [09:35:26 -11217.272567] SLOW spr round 31 (radius: 15) [09:36:32 -11217.272416] SLOW spr round 32 (radius: 20) [09:37:58 -11217.272411] SLOW spr round 33 (radius: 25) [09:39:37 -11212.762305] SLOW spr round 34 (radius: 5) [09:40:41 -11212.760452] SLOW spr round 35 (radius: 10) [09:41:39 -11212.760364] SLOW spr round 36 (radius: 15) [09:42:43 -11212.760359] SLOW spr round 37 (radius: 20) [09:44:06 -11212.760359] SLOW spr round 38 (radius: 25) [09:45:42 -11210.722553] SLOW spr round 39 (radius: 5) [09:46:46 -11210.062474] SLOW spr round 40 (radius: 5) [09:47:45 -11210.062300] SLOW spr round 41 (radius: 10) [09:48:39 -11208.123900] SLOW spr round 42 (radius: 5) [09:49:39 -11208.123894] SLOW spr round 43 (radius: 10) [09:50:34 -11208.123894] SLOW spr round 44 (radius: 15) [09:51:39 -11202.398489] SLOW spr round 45 (radius: 5) [09:52:41 -11202.398467] SLOW spr round 46 (radius: 10) [09:53:37 -11199.557512] SLOW spr round 47 (radius: 5) [09:54:38 -11184.692455] SLOW spr round 48 (radius: 5) [09:55:33 -11184.692450] SLOW spr round 49 (radius: 10) [09:56:26 -11184.692450] SLOW spr round 50 (radius: 15) [09:57:32 -11184.692450] SLOW spr round 51 (radius: 20) [09:58:50 -11184.692450] SLOW spr round 52 (radius: 25) [10:00:16 -11184.002288] SLOW spr round 53 (radius: 5) [10:01:18 -11184.002267] SLOW spr round 54 (radius: 10) [10:02:16 -11183.297626] SLOW spr round 55 (radius: 5) [10:03:15 -11183.297626] SLOW spr round 56 (radius: 10) [10:04:09 -11183.297626] SLOW spr round 57 (radius: 15) [10:05:13 -11183.297626] SLOW spr round 58 (radius: 20) [10:06:30 -11183.297626] SLOW spr round 59 (radius: 25) [10:07:55 -11183.176052] SLOW spr round 60 (radius: 5) [10:08:58 -11183.176052] SLOW spr round 61 (radius: 10) [10:09:55 -11183.176052] SLOW spr round 62 (radius: 15) [10:10:59 -11183.176052] SLOW spr round 63 (radius: 20) [10:12:17 -11183.176052] SLOW spr round 64 (radius: 25) [10:13:43 -11183.176052] Model parameter optimization (eps = 0.100000) [10:13:50] ML tree search #11, logLikelihood: -11180.736939 [10:13:50 -48994.478998] Initial branch length optimization [10:13:50 -39825.262213] Model parameter optimization (eps = 10.000000) [10:14:00 -39791.489351] AUTODETECT spr round 1 (radius: 5) [10:14:47 -28501.715289] AUTODETECT spr round 2 (radius: 10) [10:15:40 -20499.725006] AUTODETECT spr round 3 (radius: 15) [10:16:37 -17726.447504] AUTODETECT spr round 4 (radius: 20) [10:17:42 -16525.476003] AUTODETECT spr round 5 (radius: 25) [10:18:49 -15446.793205] SPR radius for FAST iterations: 25 (autodetect) [10:18:50 -15446.793205] Model parameter optimization (eps = 3.000000) [10:19:00 -15365.348900] FAST spr round 1 (radius: 25) [10:19:54 -12926.036172] FAST spr round 2 (radius: 25) [10:20:44 -12682.222720] FAST spr round 3 (radius: 25) [10:21:32 -12664.642959] FAST spr round 4 (radius: 25) [10:22:18 -12662.630498] FAST spr round 5 (radius: 25) [10:23:03 -12662.627447] Model parameter optimization (eps = 1.000000) [10:23:07 -12661.722410] SLOW spr round 1 (radius: 5) [10:24:00 -12657.224709] SLOW spr round 2 (radius: 5) [10:24:52 -12655.894942] SLOW spr round 3 (radius: 5) [10:25:43 -12655.893521] SLOW spr round 4 (radius: 10) [10:26:33 -12655.230076] SLOW spr round 5 (radius: 5) [10:27:32 -12653.564663] SLOW spr round 6 (radius: 5) [10:28:27 -12653.564615] SLOW spr round 7 (radius: 10) [10:29:20 -12653.564610] SLOW spr round 8 (radius: 15) [10:30:24 -12646.833985] SLOW spr round 9 (radius: 5) [10:31:26 -12643.555537] SLOW spr round 10 (radius: 5) [10:32:23 -12642.325675] SLOW spr round 11 (radius: 5) [10:33:18 -12641.333083] SLOW spr round 12 (radius: 5) [10:34:10 -12641.332995] SLOW spr round 13 (radius: 10) [10:35:01 -12641.332963] SLOW spr round 14 (radius: 15) [10:36:06 -12641.332633] SLOW spr round 15 (radius: 20) [10:37:22 -12637.454484] SLOW spr round 16 (radius: 5) [10:38:24 -12637.446760] SLOW spr round 17 (radius: 10) [10:39:20 -12636.385345] SLOW spr round 18 (radius: 5) [10:40:20 -12634.819096] SLOW spr round 19 (radius: 5) [10:41:15 -12634.818565] SLOW spr round 20 (radius: 10) [10:42:07 -12634.818512] SLOW spr round 21 (radius: 15) [10:43:11 -12634.818507] SLOW spr round 22 (radius: 20) [10:44:27 -12621.725455] SLOW spr round 23 (radius: 5) [10:45:31 -12567.703768] SLOW spr round 24 (radius: 5) [10:46:28 -12567.702947] SLOW spr round 25 (radius: 10) [10:47:21 -12567.702821] SLOW spr round 26 (radius: 15) [10:48:24 -12565.764994] SLOW spr round 27 (radius: 5) [10:49:25 -12565.764904] SLOW spr round 28 (radius: 10) [10:50:21 -12565.137402] SLOW spr round 29 (radius: 5) [10:51:19 -12565.137267] SLOW spr round 30 (radius: 10) [10:52:13 -12565.137266] SLOW spr round 31 (radius: 15) [10:53:15 -12565.137266] SLOW spr round 32 (radius: 20) [10:54:29 -12565.057827] SLOW spr round 33 (radius: 25) [10:55:52 -12554.844439] SLOW spr round 34 (radius: 5) [10:56:55 -12550.716236] SLOW spr round 35 (radius: 5) [10:57:51 -12550.716135] SLOW spr round 36 (radius: 10) [10:58:44 -12550.716125] SLOW spr round 37 (radius: 15) [10:59:47 -12545.031255] SLOW spr round 38 (radius: 5) [11:00:48 -12545.031255] SLOW spr round 39 (radius: 10) [11:01:43 -12545.031255] SLOW spr round 40 (radius: 15) [11:02:45 -12545.031255] SLOW spr round 41 (radius: 20) [11:03:57 -12545.031251] SLOW spr round 42 (radius: 25) [11:05:16 -12545.031247] Model parameter optimization (eps = 0.100000) [11:05:17] ML tree search #12, logLikelihood: -12545.030386 [11:05:17 -49234.823881] Initial branch length optimization [11:05:18 -39887.094838] Model parameter optimization (eps = 10.000000) [11:05:34 -39827.213276] AUTODETECT spr round 1 (radius: 5) [11:06:21 -28723.831679] AUTODETECT spr round 2 (radius: 10) [11:07:14 -22392.952800] AUTODETECT spr round 3 (radius: 15) [11:08:13 -19438.241164] AUTODETECT spr round 4 (radius: 20) [11:09:19 -16999.716477] AUTODETECT spr round 5 (radius: 25) [11:10:37 -14828.341335] SPR radius for FAST iterations: 25 (autodetect) [11:10:37 -14828.341335] Model parameter optimization (eps = 3.000000) [11:11:02 -14722.111728] FAST spr round 1 (radius: 25) [11:11:54 -11901.748409] FAST spr round 2 (radius: 25) [11:12:44 -11524.703213] FAST spr round 3 (radius: 25) [11:13:31 -11495.915497] FAST spr round 4 (radius: 25) [11:14:18 -11488.055628] FAST spr round 5 (radius: 25) [11:15:04 -11486.388350] FAST spr round 6 (radius: 25) [11:15:49 -11486.388312] Model parameter optimization (eps = 1.000000) [11:15:56 -11484.765802] SLOW spr round 1 (radius: 5) [11:16:50 -11480.107114] SLOW spr round 2 (radius: 5) [11:17:41 -11479.602427] SLOW spr round 3 (radius: 5) [11:18:32 -11479.602401] SLOW spr round 4 (radius: 10) [11:19:23 -11478.976207] SLOW spr round 5 (radius: 5) [11:20:22 -11478.241845] SLOW spr round 6 (radius: 5) [11:21:18 -11478.241845] SLOW spr round 7 (radius: 10) [11:22:09 -11477.782206] SLOW spr round 8 (radius: 5) [11:23:08 -11477.780905] SLOW spr round 9 (radius: 10) [11:24:02 -11477.780905] SLOW spr round 10 (radius: 15) [11:25:04 -11476.125339] SLOW spr round 11 (radius: 5) [11:26:04 -11476.125338] SLOW spr round 12 (radius: 10) [11:26:58 -11476.014633] SLOW spr round 13 (radius: 5) [11:27:57 -11476.014633] SLOW spr round 14 (radius: 10) [11:28:50 -11476.014633] SLOW spr round 15 (radius: 15) [11:29:52 -11474.368958] SLOW spr round 16 (radius: 5) [11:30:52 -11474.368903] SLOW spr round 17 (radius: 10) [11:31:46 -11474.368889] SLOW spr round 18 (radius: 15) [11:32:47 -11474.368885] SLOW spr round 19 (radius: 20) [11:33:59 -11470.934909] SLOW spr round 20 (radius: 5) [11:35:00 -11469.654177] SLOW spr round 21 (radius: 5) [11:35:56 -11469.653044] SLOW spr round 22 (radius: 10) [11:36:48 -11469.652575] SLOW spr round 23 (radius: 15) [11:37:50 -11469.652377] SLOW spr round 24 (radius: 20) [11:39:00 -11469.652298] SLOW spr round 25 (radius: 25) [11:40:22 -11398.295288] SLOW spr round 26 (radius: 5) [11:41:25 -11344.939284] SLOW spr round 27 (radius: 5) [11:42:22 -11339.398678] SLOW spr round 28 (radius: 5) [11:43:15 -11339.398522] SLOW spr round 29 (radius: 10) [11:44:06 -11328.347240] SLOW spr round 30 (radius: 5) [11:45:05 -11327.943365] SLOW spr round 31 (radius: 5) [11:46:02 -11327.918342] SLOW spr round 32 (radius: 10) [11:46:56 -11254.706817] SLOW spr round 33 (radius: 5) [11:47:59 -11247.564609] SLOW spr round 34 (radius: 5) [11:48:56 -11247.209616] SLOW spr round 35 (radius: 5) [11:49:50 -11247.208316] SLOW spr round 36 (radius: 10) [11:50:43 -11239.343035] SLOW spr round 37 (radius: 5) [11:51:45 -11239.343007] SLOW spr round 38 (radius: 10) [11:52:40 -11239.343007] SLOW spr round 39 (radius: 15) [11:53:44 -11233.841714] SLOW spr round 40 (radius: 5) [11:54:47 -11233.403545] SLOW spr round 41 (radius: 5) [11:55:46 -11233.361153] SLOW spr round 42 (radius: 10) [11:56:39 -11233.359543] SLOW spr round 43 (radius: 15) [11:57:45 -11232.923463] SLOW spr round 44 (radius: 5) [11:58:48 -11232.891307] SLOW spr round 45 (radius: 10) [11:59:44 -11231.687296] SLOW spr round 46 (radius: 5) [12:00:44 -11231.687278] SLOW spr round 47 (radius: 10) [12:01:39 -11231.687278] SLOW spr round 48 (radius: 15) [12:02:43 -11231.687278] SLOW spr round 49 (radius: 20) [12:04:01 -11231.687278] SLOW spr round 50 (radius: 25) [12:05:27 -11230.825336] SLOW spr round 51 (radius: 5) [12:06:30 -11230.825329] SLOW spr round 52 (radius: 10) [12:07:28 -11230.825329] SLOW spr round 53 (radius: 15) [12:08:31 -11230.825329] SLOW spr round 54 (radius: 20) [12:09:47 -11230.825329] SLOW spr round 55 (radius: 25) [12:11:10 -11230.825329] Model parameter optimization (eps = 0.100000) [12:11:14] ML tree search #13, logLikelihood: -11230.708531 [12:11:14 -49064.705563] Initial branch length optimization [12:11:15 -39701.442199] Model parameter optimization (eps = 10.000000) [12:11:27 -39651.743903] AUTODETECT spr round 1 (radius: 5) [12:12:14 -28955.603939] AUTODETECT spr round 2 (radius: 10) [12:13:06 -21967.702348] AUTODETECT spr round 3 (radius: 15) [12:14:05 -17682.715839] AUTODETECT spr round 4 (radius: 20) [12:15:09 -14788.118685] AUTODETECT spr round 5 (radius: 25) [12:16:23 -13840.552065] SPR radius for FAST iterations: 25 (autodetect) [12:16:23 -13840.552065] Model parameter optimization (eps = 3.000000) [12:16:33 -13778.205938] FAST spr round 1 (radius: 25) [12:17:27 -11648.060164] FAST spr round 2 (radius: 25) [12:18:18 -11481.983743] FAST spr round 3 (radius: 25) [12:19:07 -11456.565923] FAST spr round 4 (radius: 25) [12:19:55 -11394.238467] FAST spr round 5 (radius: 25) [12:20:42 -11369.371675] FAST spr round 6 (radius: 25) [12:21:28 -11369.364564] Model parameter optimization (eps = 1.000000) [12:21:37 -11366.595538] SLOW spr round 1 (radius: 5) [12:22:30 -11358.791265] SLOW spr round 2 (radius: 5) [12:23:22 -11356.205407] SLOW spr round 3 (radius: 5) [12:24:14 -11356.204513] SLOW spr round 4 (radius: 10) [12:25:06 -11355.366095] SLOW spr round 5 (radius: 5) [12:26:06 -11355.365583] SLOW spr round 6 (radius: 10) [12:27:01 -11354.192598] SLOW spr round 7 (radius: 5) [12:28:01 -11352.911732] SLOW spr round 8 (radius: 5) [12:28:56 -11351.943341] SLOW spr round 9 (radius: 5) [12:29:48 -11351.942517] SLOW spr round 10 (radius: 10) [12:30:40 -11351.942081] SLOW spr round 11 (radius: 15) [12:31:46 -11350.921291] SLOW spr round 12 (radius: 5) [12:32:49 -11349.453395] SLOW spr round 13 (radius: 5) [12:33:45 -11349.450550] SLOW spr round 14 (radius: 10) [12:34:37 -11349.367560] SLOW spr round 15 (radius: 15) [12:35:42 -11349.367289] SLOW spr round 16 (radius: 20) [12:36:58 -11347.216142] SLOW spr round 17 (radius: 5) [12:38:00 -11347.214527] SLOW spr round 18 (radius: 10) [12:38:55 -11344.541354] SLOW spr round 19 (radius: 5) [12:39:55 -11342.674174] SLOW spr round 20 (radius: 5) [12:40:50 -11342.673632] SLOW spr round 21 (radius: 10) [12:41:41 -11342.673623] SLOW spr round 22 (radius: 15) [12:42:47 -11342.673616] SLOW spr round 23 (radius: 20) [12:44:01 -11342.673610] SLOW spr round 24 (radius: 25) [12:45:19 -11341.600996] SLOW spr round 25 (radius: 5) [12:46:21 -11341.566222] SLOW spr round 26 (radius: 10) [12:47:16 -11341.563847] SLOW spr round 27 (radius: 15) [12:48:20 -11341.129563] SLOW spr round 28 (radius: 5) [12:49:22 -11339.263130] SLOW spr round 29 (radius: 5) [12:50:18 -11338.941009] SLOW spr round 30 (radius: 5) [12:51:11 -11338.939983] SLOW spr round 31 (radius: 10) [12:52:01 -11338.939513] SLOW spr round 32 (radius: 15) [12:53:07 -11338.939293] SLOW spr round 33 (radius: 20) [12:54:21 -11338.939192] SLOW spr round 34 (radius: 25) [12:55:41 -11338.939145] Model parameter optimization (eps = 0.100000) [12:55:53] ML tree search #14, logLikelihood: -11334.911163 [12:55:53 -49319.462837] Initial branch length optimization [12:55:53 -40034.072934] Model parameter optimization (eps = 10.000000) [12:56:03 -39996.828175] AUTODETECT spr round 1 (radius: 5) [12:56:49 -28101.555259] AUTODETECT spr round 2 (radius: 10) [12:57:40 -20997.910685] AUTODETECT spr round 3 (radius: 15) [12:58:37 -18571.406217] AUTODETECT spr round 4 (radius: 20) [12:59:36 -16898.265383] AUTODETECT spr round 5 (radius: 25) [13:00:38 -16009.865394] SPR radius for FAST iterations: 25 (autodetect) [13:00:38 -16009.865394] Model parameter optimization (eps = 3.000000) [13:00:50 -15917.479913] FAST spr round 1 (radius: 25) [13:01:45 -12909.316578] FAST spr round 2 (radius: 25) [13:02:36 -11947.745425] FAST spr round 3 (radius: 25) [13:03:25 -11749.317222] FAST spr round 4 (radius: 25) [13:04:13 -11714.559781] FAST spr round 5 (radius: 25) [13:04:59 -11713.911324] FAST spr round 6 (radius: 25) [13:05:45 -11713.910638] Model parameter optimization (eps = 1.000000) [13:05:51 -11712.316012] SLOW spr round 1 (radius: 5) [13:06:45 -11710.253009] SLOW spr round 2 (radius: 5) [13:07:37 -11709.518155] SLOW spr round 3 (radius: 5) [13:08:28 -11709.517743] SLOW spr round 4 (radius: 10) [13:09:20 -11707.700971] SLOW spr round 5 (radius: 5) [13:10:20 -11707.700906] SLOW spr round 6 (radius: 10) [13:11:14 -11688.078058] SLOW spr round 7 (radius: 5) [13:12:15 -11667.828999] SLOW spr round 8 (radius: 5) [13:13:09 -11661.159200] SLOW spr round 9 (radius: 5) [13:14:01 -11661.159151] SLOW spr round 10 (radius: 10) [13:14:51 -11661.159138] SLOW spr round 11 (radius: 15) [13:15:54 -11659.437192] SLOW spr round 12 (radius: 5) [13:16:54 -11659.150763] SLOW spr round 13 (radius: 5) [13:17:50 -11659.149745] SLOW spr round 14 (radius: 10) [13:18:41 -11659.148874] SLOW spr round 15 (radius: 15) [13:19:43 -11659.148861] SLOW spr round 16 (radius: 20) [13:20:56 -11658.730013] SLOW spr round 17 (radius: 5) [13:21:57 -11658.729680] SLOW spr round 18 (radius: 10) [13:22:51 -11658.729667] SLOW spr round 19 (radius: 15) [13:23:52 -11658.729655] SLOW spr round 20 (radius: 20) [13:25:06 -11657.566592] SLOW spr round 21 (radius: 5) [13:26:07 -11657.564411] SLOW spr round 22 (radius: 10) [13:27:02 -11657.563266] SLOW spr round 23 (radius: 15) [13:28:02 -11657.562474] SLOW spr round 24 (radius: 20) [13:29:16 -11657.561928] SLOW spr round 25 (radius: 25) [13:30:40 -11591.452720] SLOW spr round 26 (radius: 5) [13:31:45 -11444.045558] SLOW spr round 27 (radius: 5) [13:32:44 -11428.462036] SLOW spr round 28 (radius: 5) [13:33:39 -11426.584688] SLOW spr round 29 (radius: 5) [13:34:32 -11426.584540] SLOW spr round 30 (radius: 10) [13:35:23 -11426.584510] SLOW spr round 31 (radius: 15) [13:36:29 -11387.806202] SLOW spr round 32 (radius: 5) [13:37:31 -11387.805781] SLOW spr round 33 (radius: 10) [13:38:27 -11386.610106] SLOW spr round 34 (radius: 5) [13:39:27 -11386.610026] SLOW spr round 35 (radius: 10) [13:40:22 -11386.610019] SLOW spr round 36 (radius: 15) [13:41:24 -11386.610014] SLOW spr round 37 (radius: 20) [13:42:40 -11385.535518] SLOW spr round 38 (radius: 5) [13:43:43 -11384.441947] SLOW spr round 39 (radius: 5) [13:44:41 -11384.441887] SLOW spr round 40 (radius: 10) [13:45:34 -11384.441881] SLOW spr round 41 (radius: 15) [13:46:38 -11384.441876] SLOW spr round 42 (radius: 20) [13:47:52 -11384.441871] SLOW spr round 43 (radius: 25) [13:49:15 -11382.026980] SLOW spr round 44 (radius: 5) [13:50:18 -11382.025358] SLOW spr round 45 (radius: 10) [13:51:16 -11382.025287] SLOW spr round 46 (radius: 15) [13:52:17 -11382.025277] SLOW spr round 47 (radius: 20) [13:53:34 -11382.025271] SLOW spr round 48 (radius: 25) [13:55:00 -11381.715899] SLOW spr round 49 (radius: 5) [13:56:04 -11381.715628] SLOW spr round 50 (radius: 10) [13:57:01 -11381.715613] SLOW spr round 51 (radius: 15) [13:58:02 -11381.715605] SLOW spr round 52 (radius: 20) [13:59:19 -11364.605931] SLOW spr round 53 (radius: 5) [14:00:24 -11327.256368] SLOW spr round 54 (radius: 5) [14:01:23 -11311.882959] SLOW spr round 55 (radius: 5) [14:02:18 -11308.023583] SLOW spr round 56 (radius: 5) [14:03:11 -11307.246298] SLOW spr round 57 (radius: 5) [14:04:03 -11307.246070] SLOW spr round 58 (radius: 10) [14:04:54 -11305.511565] SLOW spr round 59 (radius: 5) [14:05:54 -11305.511146] SLOW spr round 60 (radius: 10) [14:06:48 -11305.511130] SLOW spr round 61 (radius: 15) [14:07:50 -11305.511123] SLOW spr round 62 (radius: 20) [14:09:03 -11305.511116] SLOW spr round 63 (radius: 25) [14:10:24 -11305.511108] Model parameter optimization (eps = 0.100000) [14:10:27] ML tree search #15, logLikelihood: -11305.453926 [14:10:27 -49276.764354] Initial branch length optimization [14:10:28 -40141.929955] Model parameter optimization (eps = 10.000000) [14:10:42 -40104.492626] AUTODETECT spr round 1 (radius: 5) [14:11:29 -28817.821732] AUTODETECT spr round 2 (radius: 10) [14:12:23 -21757.951824] AUTODETECT spr round 3 (radius: 15) [14:13:18 -18142.070377] AUTODETECT spr round 4 (radius: 20) [14:14:20 -16396.704622] AUTODETECT spr round 5 (radius: 25) [14:15:33 -15418.441746] SPR radius for FAST iterations: 25 (autodetect) [14:15:33 -15418.441746] Model parameter optimization (eps = 3.000000) [14:15:43 -15324.313056] FAST spr round 1 (radius: 25) [14:16:36 -12444.476319] FAST spr round 2 (radius: 25) [14:17:26 -12085.890331] FAST spr round 3 (radius: 25) [14:18:14 -11909.964965] FAST spr round 4 (radius: 25) [14:19:02 -11893.618285] FAST spr round 5 (radius: 25) [14:19:49 -11891.264354] FAST spr round 6 (radius: 25) [14:20:35 -11891.263628] Model parameter optimization (eps = 1.000000) [14:20:43 -11887.962236] SLOW spr round 1 (radius: 5) [14:21:36 -11884.407668] SLOW spr round 2 (radius: 5) [14:22:29 -11879.778514] SLOW spr round 3 (radius: 5) [14:23:20 -11877.606263] SLOW spr round 4 (radius: 5) [14:24:11 -11877.588779] SLOW spr round 5 (radius: 10) [14:25:03 -11877.050834] SLOW spr round 6 (radius: 5) [14:26:04 -11874.620301] SLOW spr round 7 (radius: 5) [14:27:00 -11873.507140] SLOW spr round 8 (radius: 5) [14:27:53 -11873.506863] SLOW spr round 9 (radius: 10) [14:28:45 -11873.506856] SLOW spr round 10 (radius: 15) [14:29:57 -11528.562191] SLOW spr round 11 (radius: 5) [14:31:02 -11375.411272] SLOW spr round 12 (radius: 5) [14:32:01 -11366.087919] SLOW spr round 13 (radius: 5) [14:32:57 -11364.672895] SLOW spr round 14 (radius: 5) [14:33:50 -11364.672801] SLOW spr round 15 (radius: 10) [14:34:43 -11363.614000] SLOW spr round 16 (radius: 5) [14:35:45 -11363.608485] SLOW spr round 17 (radius: 10) [14:36:42 -11363.608411] SLOW spr round 18 (radius: 15) [14:37:51 -11363.608409] SLOW spr round 19 (radius: 20) [14:39:18 -11362.158186] SLOW spr round 20 (radius: 5) [14:40:23 -11362.027603] SLOW spr round 21 (radius: 5) [14:41:21 -11362.025627] SLOW spr round 22 (radius: 10) [14:42:15 -11361.105678] SLOW spr round 23 (radius: 5) [14:43:17 -11361.102073] SLOW spr round 24 (radius: 10) [14:44:12 -11361.101985] SLOW spr round 25 (radius: 15) [14:45:21 -11360.035467] SLOW spr round 26 (radius: 5) [14:46:24 -11360.035460] SLOW spr round 27 (radius: 10) [14:47:22 -11360.035249] SLOW spr round 28 (radius: 15) [14:48:30 -11360.035246] SLOW spr round 29 (radius: 20) [14:49:59 -11360.035244] SLOW spr round 30 (radius: 25) [14:51:40 -11302.658668] SLOW spr round 31 (radius: 5) [14:52:46 -11255.199472] SLOW spr round 32 (radius: 5) [14:53:46 -11232.318172] SLOW spr round 33 (radius: 5) [14:54:41 -11232.318154] SLOW spr round 34 (radius: 10) [14:55:33 -11232.286572] SLOW spr round 35 (radius: 15) [14:56:42 -11232.269208] SLOW spr round 36 (radius: 20) [14:58:06 -11232.265679] SLOW spr round 37 (radius: 25) [14:59:42 -11231.613170] SLOW spr round 38 (radius: 5) [15:00:43 -11231.613166] SLOW spr round 39 (radius: 10) [15:01:40 -11231.613166] SLOW spr round 40 (radius: 15) [15:02:45 -11231.613166] SLOW spr round 41 (radius: 20) [15:04:11 -11231.613166] SLOW spr round 42 (radius: 25) [15:05:46 -11231.613166] Model parameter optimization (eps = 0.100000) [15:05:51] ML tree search #16, logLikelihood: -11231.084100 [15:05:51 -49131.043732] Initial branch length optimization [15:05:52 -39972.197318] Model parameter optimization (eps = 10.000000) [15:05:59 -39956.182418] AUTODETECT spr round 1 (radius: 5) [15:06:44 -28482.523990] AUTODETECT spr round 2 (radius: 10) [15:07:33 -21100.991809] AUTODETECT spr round 3 (radius: 15) [15:08:27 -18295.349380] AUTODETECT spr round 4 (radius: 20) [15:09:24 -17009.338385] AUTODETECT spr round 5 (radius: 25) [15:10:31 -15982.634663] SPR radius for FAST iterations: 25 (autodetect) [15:10:31 -15982.634663] Model parameter optimization (eps = 3.000000) [15:10:43 -15903.103380] FAST spr round 1 (radius: 25) [15:11:36 -12629.520942] FAST spr round 2 (radius: 25) [15:12:24 -11777.019075] FAST spr round 3 (radius: 25) [15:13:12 -11473.875708] FAST spr round 4 (radius: 25) [15:13:59 -11430.137855] FAST spr round 5 (radius: 25) [15:14:44 -11425.318337] FAST spr round 6 (radius: 25) [15:15:28 -11425.317983] Model parameter optimization (eps = 1.000000) [15:15:34 -11421.175867] SLOW spr round 1 (radius: 5) [15:16:26 -11410.790995] SLOW spr round 2 (radius: 5) [15:17:16 -11410.611175] SLOW spr round 3 (radius: 5) [15:18:05 -11410.611012] SLOW spr round 4 (radius: 10) [15:18:54 -11410.576317] SLOW spr round 5 (radius: 15) [15:19:56 -11407.554308] SLOW spr round 6 (radius: 5) [15:20:55 -11407.554293] SLOW spr round 7 (radius: 10) [15:21:48 -11406.509974] SLOW spr round 8 (radius: 5) [15:22:46 -11404.807740] SLOW spr round 9 (radius: 5) [15:23:39 -11404.807735] SLOW spr round 10 (radius: 10) [15:24:29 -11404.807735] SLOW spr round 11 (radius: 15) [15:25:30 -11403.070241] SLOW spr round 12 (radius: 5) [15:26:31 -11400.014051] SLOW spr round 13 (radius: 5) [15:27:25 -11400.014010] SLOW spr round 14 (radius: 10) [15:28:16 -11400.014009] SLOW spr round 15 (radius: 15) [15:29:16 -11400.014009] SLOW spr round 16 (radius: 20) [15:30:29 -11372.875137] SLOW spr round 17 (radius: 5) [15:31:30 -11370.780888] SLOW spr round 18 (radius: 5) [15:32:26 -11370.059942] SLOW spr round 19 (radius: 5) [15:33:19 -11370.058261] SLOW spr round 20 (radius: 10) [15:34:08 -11370.057248] SLOW spr round 21 (radius: 15) [15:35:09 -11368.416530] SLOW spr round 22 (radius: 5) [15:36:08 -11368.416091] SLOW spr round 23 (radius: 10) [15:37:01 -11368.416074] SLOW spr round 24 (radius: 15) [15:37:59 -11368.416067] SLOW spr round 25 (radius: 20) [15:39:10 -11367.638626] SLOW spr round 26 (radius: 5) [15:40:09 -11367.638603] SLOW spr round 27 (radius: 10) [15:41:02 -11367.638603] SLOW spr round 28 (radius: 15) [15:42:00 -11367.638603] SLOW spr round 29 (radius: 20) [15:43:11 -11367.638603] SLOW spr round 30 (radius: 25) [15:44:30 -11367.252845] SLOW spr round 31 (radius: 5) [15:45:29 -11367.252845] SLOW spr round 32 (radius: 10) [15:46:23 -11367.252845] SLOW spr round 33 (radius: 15) [15:47:21 -11367.252845] SLOW spr round 34 (radius: 20) [15:48:31 -11367.252845] SLOW spr round 35 (radius: 25) [15:49:50 -11367.252845] Model parameter optimization (eps = 0.100000) [15:49:52] ML tree search #17, logLikelihood: -11367.213248 [15:49:53 -49409.547138] Initial branch length optimization [15:49:53 -40161.084062] Model parameter optimization (eps = 10.000000) [15:50:03 -40126.344152] AUTODETECT spr round 1 (radius: 5) [15:50:48 -28612.272753] AUTODETECT spr round 2 (radius: 10) [15:51:38 -22346.854556] AUTODETECT spr round 3 (radius: 15) [15:52:32 -19067.879445] AUTODETECT spr round 4 (radius: 20) [15:53:31 -17551.735724] AUTODETECT spr round 5 (radius: 25) [15:54:31 -16579.376393] SPR radius for FAST iterations: 25 (autodetect) [15:54:31 -16579.376393] Model parameter optimization (eps = 3.000000) [15:54:42 -16501.081317] FAST spr round 1 (radius: 25) [15:55:34 -13053.685046] FAST spr round 2 (radius: 25) [15:56:23 -11711.595654] FAST spr round 3 (radius: 25) [15:57:10 -11437.783229] FAST spr round 4 (radius: 25) [15:57:56 -11428.695306] FAST spr round 5 (radius: 25) [15:58:41 -11408.121501] FAST spr round 6 (radius: 25) [15:59:25 -11408.118131] Model parameter optimization (eps = 1.000000) [15:59:32 -11405.571127] SLOW spr round 1 (radius: 5) [16:00:24 -11400.235513] SLOW spr round 2 (radius: 5) [16:01:14 -11399.976538] SLOW spr round 3 (radius: 5) [16:02:03 -11399.976521] SLOW spr round 4 (radius: 10) [16:02:53 -11399.143978] SLOW spr round 5 (radius: 5) [16:03:51 -11399.143942] SLOW spr round 6 (radius: 10) [16:04:45 -11396.790532] SLOW spr round 7 (radius: 5) [16:05:42 -11396.790532] SLOW spr round 8 (radius: 10) [16:06:34 -11396.790532] SLOW spr round 9 (radius: 15) [16:07:36 -11396.083662] SLOW spr round 10 (radius: 5) [16:08:36 -11395.349726] SLOW spr round 11 (radius: 5) [16:09:30 -11395.349726] SLOW spr round 12 (radius: 10) [16:10:21 -11395.349725] SLOW spr round 13 (radius: 15) [16:11:24 -11395.349725] SLOW spr round 14 (radius: 20) [16:12:41 -11393.337681] SLOW spr round 15 (radius: 5) [16:13:42 -11392.571821] SLOW spr round 16 (radius: 5) [16:14:37 -11392.366291] SLOW spr round 17 (radius: 5) [16:15:28 -11392.366279] SLOW spr round 18 (radius: 10) [16:16:19 -11388.128043] SLOW spr round 19 (radius: 5) [16:17:17 -11387.922500] SLOW spr round 20 (radius: 5) [16:18:11 -11387.922267] SLOW spr round 21 (radius: 10) [16:19:01 -11387.921108] SLOW spr round 22 (radius: 15) [16:20:05 -11387.921102] SLOW spr round 23 (radius: 20) [16:21:23 -11386.155868] SLOW spr round 24 (radius: 5) [16:22:25 -11358.546624] SLOW spr round 25 (radius: 5) [16:23:21 -11333.876097] SLOW spr round 26 (radius: 5) [16:24:13 -11333.873016] SLOW spr round 27 (radius: 10) [16:25:04 -11333.872677] SLOW spr round 28 (radius: 15) [16:26:09 -11333.872643] SLOW spr round 29 (radius: 20) [16:27:27 -11333.872640] SLOW spr round 30 (radius: 25) [16:28:55 -11333.637824] SLOW spr round 31 (radius: 5) [16:29:55 -11333.592227] SLOW spr round 32 (radius: 10) [16:30:51 -11333.280400] SLOW spr round 33 (radius: 5) [16:31:48 -11333.280305] SLOW spr round 34 (radius: 10) [16:32:40 -11333.280291] SLOW spr round 35 (radius: 15) [16:33:44 -11333.280289] SLOW spr round 36 (radius: 20) [16:35:03 -11333.280288] SLOW spr round 37 (radius: 25) [16:36:30 -11333.280288] Model parameter optimization (eps = 0.100000) [16:36:34] ML tree search #18, logLikelihood: -11333.243685 [16:36:34 -49487.056130] Initial branch length optimization [16:36:34 -39903.226456] Model parameter optimization (eps = 10.000000) [16:36:46 -39857.277831] AUTODETECT spr round 1 (radius: 5) [16:37:32 -29352.124716] AUTODETECT spr round 2 (radius: 10) [16:38:24 -21444.158614] AUTODETECT spr round 3 (radius: 15) [16:39:20 -18233.039121] AUTODETECT spr round 4 (radius: 20) [16:40:19 -16250.187555] AUTODETECT spr round 5 (radius: 25) [16:41:24 -14752.082204] SPR radius for FAST iterations: 25 (autodetect) [16:41:24 -14752.082204] Model parameter optimization (eps = 3.000000) [16:41:41 -14664.503563] FAST spr round 1 (radius: 25) [16:42:34 -11767.452750] FAST spr round 2 (radius: 25) [16:43:22 -11461.399099] FAST spr round 3 (radius: 25) [16:44:09 -11396.040337] FAST spr round 4 (radius: 25) [16:44:54 -11391.252791] FAST spr round 5 (radius: 25) [16:45:38 -11390.954192] FAST spr round 6 (radius: 25) [16:46:22 -11390.953886] Model parameter optimization (eps = 1.000000) [16:46:27 -11390.085560] SLOW spr round 1 (radius: 5) [16:47:18 -11388.184606] SLOW spr round 2 (radius: 5) [16:48:08 -11388.183092] SLOW spr round 3 (radius: 10) [16:48:57 -11387.576087] SLOW spr round 4 (radius: 5) [16:49:55 -11387.007133] SLOW spr round 5 (radius: 5) [16:50:49 -11387.007077] SLOW spr round 6 (radius: 10) [16:51:39 -11386.568663] SLOW spr round 7 (radius: 5) [16:52:37 -11386.568651] SLOW spr round 8 (radius: 10) [16:53:29 -11385.392866] SLOW spr round 9 (radius: 5) [16:54:27 -11385.392759] SLOW spr round 10 (radius: 10) [16:55:18 -11385.392759] SLOW spr round 11 (radius: 15) [16:56:20 -11381.552573] SLOW spr round 12 (radius: 5) [16:57:20 -11381.551860] SLOW spr round 13 (radius: 10) [16:58:14 -11379.249059] SLOW spr round 14 (radius: 5) [16:59:10 -11377.982549] SLOW spr round 15 (radius: 5) [17:00:03 -11376.487809] SLOW spr round 16 (radius: 5) [17:00:53 -11376.487795] SLOW spr round 17 (radius: 10) [17:01:43 -11376.487699] SLOW spr round 18 (radius: 15) [17:02:46 -11376.444293] SLOW spr round 19 (radius: 20) [17:04:04 -11372.110187] SLOW spr round 20 (radius: 5) [17:05:04 -11371.224355] SLOW spr round 21 (radius: 5) [17:05:59 -11371.222806] SLOW spr round 22 (radius: 10) [17:06:50 -11371.222650] SLOW spr round 23 (radius: 15) [17:07:53 -11364.568627] SLOW spr round 24 (radius: 5) [17:08:52 -11357.758752] SLOW spr round 25 (radius: 5) [17:09:46 -11357.757412] SLOW spr round 26 (radius: 10) [17:10:37 -11357.708165] SLOW spr round 27 (radius: 15) [17:11:39 -11357.708157] SLOW spr round 28 (radius: 20) [17:12:58 -11357.285420] SLOW spr round 29 (radius: 5) [17:13:58 -11357.282052] SLOW spr round 30 (radius: 10) [17:14:53 -11357.282047] SLOW spr round 31 (radius: 15) [17:15:55 -11357.282047] SLOW spr round 32 (radius: 20) [17:17:19 -11357.229011] SLOW spr round 33 (radius: 25) [17:18:52 -11333.568918] SLOW spr round 34 (radius: 5) [17:19:54 -11311.355817] SLOW spr round 35 (radius: 5) [17:20:49 -11311.355793] SLOW spr round 36 (radius: 10) [17:21:40 -11307.735946] SLOW spr round 37 (radius: 5) [17:22:38 -11307.735946] SLOW spr round 38 (radius: 10) [17:23:30 -11307.735850] SLOW spr round 39 (radius: 15) [17:24:33 -11302.653974] SLOW spr round 40 (radius: 5) [17:25:33 -11302.652636] SLOW spr round 41 (radius: 10) [17:26:27 -11302.652619] SLOW spr round 42 (radius: 15) [17:27:28 -11302.652619] SLOW spr round 43 (radius: 20) [17:28:50 -11302.652604] SLOW spr round 44 (radius: 25) [17:30:23 -11302.652604] Model parameter optimization (eps = 0.100000) [17:30:25] ML tree search #19, logLikelihood: -11302.554159 [17:30:25 -48933.176800] Initial branch length optimization [17:30:26 -39447.800523] Model parameter optimization (eps = 10.000000) [17:30:36 -39363.108468] AUTODETECT spr round 1 (radius: 5) [17:31:22 -28532.588755] AUTODETECT spr round 2 (radius: 10) [17:32:12 -21423.043858] AUTODETECT spr round 3 (radius: 15) [17:33:10 -18002.736847] AUTODETECT spr round 4 (radius: 20) [17:34:07 -16123.975693] AUTODETECT spr round 5 (radius: 25) [17:35:09 -15948.944481] SPR radius for FAST iterations: 25 (autodetect) [17:35:09 -15948.944481] Model parameter optimization (eps = 3.000000) [17:35:21 -15840.910003] FAST spr round 1 (radius: 25) [17:36:14 -13442.078093] FAST spr round 2 (radius: 25) [17:37:02 -12533.288136] FAST spr round 3 (radius: 25) [17:37:51 -12026.095466] FAST spr round 4 (radius: 25) [17:38:36 -11828.642959] FAST spr round 5 (radius: 25) [17:39:23 -11669.340174] FAST spr round 6 (radius: 25) [17:40:08 -11553.207123] FAST spr round 7 (radius: 25) [17:40:54 -11457.391438] FAST spr round 8 (radius: 25) [17:41:38 -11452.963128] FAST spr round 9 (radius: 25) [17:42:21 -11451.253187] FAST spr round 10 (radius: 25) [17:43:04 -11451.252813] Model parameter optimization (eps = 1.000000) [17:43:13 -11442.433297] SLOW spr round 1 (radius: 5) [17:44:05 -11427.948972] SLOW spr round 2 (radius: 5) [17:44:56 -11425.480655] SLOW spr round 3 (radius: 5) [17:45:46 -11425.478957] SLOW spr round 4 (radius: 10) [17:46:36 -11413.560862] SLOW spr round 5 (radius: 5) [17:47:37 -11411.275174] SLOW spr round 6 (radius: 5) [17:48:33 -11411.275065] SLOW spr round 7 (radius: 10) [17:49:25 -11397.200137] SLOW spr round 8 (radius: 5) [17:50:26 -11391.653936] SLOW spr round 9 (radius: 5) [17:51:21 -11391.653567] SLOW spr round 10 (radius: 10) [17:52:13 -11391.653566] SLOW spr round 11 (radius: 15) [17:53:18 -11389.175523] SLOW spr round 12 (radius: 5) [17:54:19 -11389.175523] SLOW spr round 13 (radius: 10) [17:55:13 -11389.175523] SLOW spr round 14 (radius: 15) [17:56:15 -11389.175523] SLOW spr round 15 (radius: 20) [17:57:35 -11388.394187] SLOW spr round 16 (radius: 5) [17:58:37 -11388.394187] SLOW spr round 17 (radius: 10) [17:59:32 -11388.394187] SLOW spr round 18 (radius: 15) [18:00:34 -11388.394187] SLOW spr round 19 (radius: 20) [18:01:54 -11388.394187] SLOW spr round 20 (radius: 25) [18:03:31 -11353.384759] SLOW spr round 21 (radius: 5) [18:04:36 -11271.646485] SLOW spr round 22 (radius: 5) [18:05:34 -11270.180144] SLOW spr round 23 (radius: 5) [18:06:28 -11270.139776] SLOW spr round 24 (radius: 10) [18:07:19 -11270.137398] SLOW spr round 25 (radius: 15) [18:08:24 -11270.136495] SLOW spr round 26 (radius: 20) [18:09:44 -11270.120802] SLOW spr round 27 (radius: 25) [18:11:22 -11270.119915] Model parameter optimization (eps = 0.100000) [18:11:26] ML tree search #20, logLikelihood: -11270.118781 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.056758,0.068500) (0.168710,1.049891) (0.567581,0.759543) (0.206950,1.874277) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -11180.736939 AIC score: 25791.473878 / AICc score: 5911671.473878 / BIC score: 28136.386226 Free parameters (model + branch lengths): 1715 WARNING: Number of free parameters (K=1715) is larger than alignment size (n=29). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 1 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/3_mltree/Q86XP0.raxml.bestTreeCollapsed Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/3_mltree/Q86XP0.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/3_mltree/Q86XP0.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/3_mltree/Q86XP0.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q86XP0/3_mltree/Q86XP0.raxml.log Analysis started: 18-Jul-2021 12:12:54 / finished: 19-Jul-2021 06:24:20 Elapsed time: 65486.580 seconds (this run) / 67502.864 seconds (total with restarts)