RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 07-Jul-2021 10:25:20 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q7Z7M0/2_msa/Q7Z7M0_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q7Z7M0/3_mltree/Q7Z7M0 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q7Z7M0/2_msa/Q7Z7M0_trimmed_msa.fasta [00:00:00] Loaded alignment with 986 taxa and 44 sites WARNING: Sequences tr_E9G6H0_E9G6H0_DAPPU_6669 and tr_A0A0P6A1Q6_A0A0P6A1Q6_9CRUS_35525 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and sp_Q9WTS6_TEN3_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_M3YHU1_M3YHU1_MUSPF_9669 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_F1P9A6_F1P9A6_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_F6VE35_F6VE35_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_F6S7Y7_F6S7Y7_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_W5PAH4_W5PAH4_SHEEP_9940 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_A0A286Y316_A0A286Y316_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_G3WSN9_G3WSN9_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_F7H3Q8_F7H3Q8_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_E1BMG7_E1BMG7_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_L5KDF3_L5KDF3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_U3JA07_U3JA07_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_A0A1S3WD26_A0A1S3WD26_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_A0A3Q0CJ48_A0A3Q0CJ48_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_A0A2U4A8C4_A0A2U4A8C4_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_A0A2U3X0D1_A0A2U3X0D1_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_A0A2Y9J0M5_A0A2Y9J0M5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_A0A2Y9N1W9_A0A2Y9N1W9_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A1D5NYG2_A0A1D5NYG2_CHICK_9031 and tr_A0A2Y9S2A0_A0A2Y9S2A0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A1D5PFY8_A0A1D5PFY8_CHICK_9031 and tr_F6YWX3_F6YWX3_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A1D5PFY8_A0A1D5PFY8_CHICK_9031 and tr_W4XFS8_W4XFS8_STRPU_7668 are exactly identical! WARNING: Sequences tr_A0A1D5PFY8_A0A1D5PFY8_CHICK_9031 and tr_U3HZ07_U3HZ07_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PFY8_A0A1D5PFY8_CHICK_9031 and tr_A0A2Y9RMZ1_A0A2Y9RMZ1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A1L1RW02_A0A1L1RW02_CHICK_9031 and sp_P79795_NRP1_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A1L1RW02_A0A1L1RW02_CHICK_9031 and tr_A0A093HHZ0_A0A093HHZ0_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_G1MUB5_G1MUB5_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_K7FWA9_K7FWA9_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_U3K519_U3K519_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_U3I815_U3I815_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A151NQZ2_A0A151NQZ2_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A091K3I5_A0A091K3I5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A091VGD7_A0A091VGD7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A087REI5_A0A087REI5_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A093H8Q7_A0A093H8Q7_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A091VBB1_A0A091VBB1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A099YZG1_A0A099YZG1_TINGU_94827 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A091GA54_A0A091GA54_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A0A0ATU0_A0A0A0ATU0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A2I0MAD0_A0A2I0MAD0_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A3Q0GNR9_A0A3Q0GNR9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A1V4KV27_A0A1V4KV27_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NGZ7_F1NGZ7_CHICK_9031 and tr_A0A218UR83_A0A218UR83_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NRI8_F1NRI8_CHICK_9031 and tr_A0A0Q3MHH8_A0A0Q3MHH8_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NRI8_F1NRI8_CHICK_9031 and tr_A0A091VLW6_A0A091VLW6_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NRI8_F1NRI8_CHICK_9031 and tr_A0A226MWN9_A0A226MWN9_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NRI8_F1NRI8_CHICK_9031 and tr_A0A226P5M3_A0A226P5M3_COLVI_9014 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_M3XX39_M3XX39_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_G3GUX9_G3GUX9_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_E2RJJ6_E2RJJ6_CANLF_9615 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_F6Z0W2_F6Z0W2_HORSE_9796 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_W5PL47_W5PL47_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_F1M798_F1M798_RAT_10116 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_I3MRP8_I3MRP8_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_G3TKR9_G3TKR9_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_F1RMB2_F1RMB2_PIG_9823 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_M3WHZ6_M3WHZ6_FELCA_9685 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_A0A091E472_A0A091E472_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_A0A1S3GLV9_A0A1S3GLV9_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_A0A1U7TVA4_A0A1U7TVA4_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_A0A1U7Q6N9_A0A1U7Q6N9_MESAU_10036 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_A0A2U3ZHM4_A0A2U3ZHM4_ODORO_9708 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_A0A2Y9DVQ9_A0A2Y9DVQ9_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_A0A2Y9KWG0_A0A2Y9KWG0_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_A0A2Y9M8P8_A0A2Y9M8P8_DELLE_9749 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_A0A2Y9T6P1_A0A2Y9T6P1_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P98063_BMP1_MOUSE_10090 and tr_A0A383YYR4_A0A383YYR4_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q61087_LAMB3_MOUSE_10090 and tr_F1LPI5_F1LPI5_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_M3YP13_M3YP13_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2I3GI61_A0A2I3GI61_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_G1PNI1_G1PNI1_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2I2Y7A8_A0A2I2Y7A8_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_H2PHA8_H2PHA8_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_G1SJY9_G1SJY9_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_F1PQB7_F1PQB7_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_H2QRY8_H2QRY8_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_F6Q9D1_F6Q9D1_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_W5PY31_W5PY31_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and sp_Q9R1K2_TEN2_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_H0WU09_H0WU09_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_H0UV60_H0UV60_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and sp_Q9NT68_TEN2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A1D5Q664_A0A1D5Q664_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_G5BP45_G5BP45_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_F1RR76_F1RR76_PIG_9823 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_G7P6U4_G7P6U4_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_F1MEX4_F1MEX4_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2I2U1K4_A0A2I2U1K4_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2I3LLZ8_A0A2I3LLZ8_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A091EFK8_A0A091EFK8_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A3Q0DWR4_A0A3Q0DWR4_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A3Q0CUZ0_A0A3Q0CUZ0_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2K5LYY1_A0A2K5LYY1_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2K6BJF6_A0A2K6BJF6_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2K6AG30_A0A2K6AG30_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2R9BEF7_A0A2R9BEF7_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2U4C6K8_A0A2U4C6K8_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2U3VCH6_A0A2U3VCH6_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2Y9G269_A0A2Y9G269_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2Y9IKY1_A0A2Y9IKY1_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2Y9PVG9_A0A2Y9PVG9_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A2Y9S6V2_A0A2Y9S6V2_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9WTS5_TEN2_MOUSE_10090 and tr_A0A383Z8T5_A0A383Z8T5_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YJW0_M3YJW0_MUSPF_9669 and tr_A0A384BR08_A0A384BR08_URSMA_29073 are exactly identical! WARNING: Sequences tr_H2LEI1_H2LEI1_ORYLA_8090 and tr_H0VS62_H0VS62_CAVPO_10141 are exactly identical! WARNING: Sequences tr_H2LEI1_H2LEI1_ORYLA_8090 and tr_A0A096LVL1_A0A096LVL1_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2LEI1_H2LEI1_ORYLA_8090 and tr_A0A0P7TH57_A0A0P7TH57_9TELE_113540 are exactly identical! WARNING: Sequences tr_H2LEI1_H2LEI1_ORYLA_8090 and tr_A0A1S3NLZ6_A0A1S3NLZ6_SALSA_8030 are exactly identical! WARNING: Sequences tr_H2LEI1_H2LEI1_ORYLA_8090 and tr_A0A1U7TUU4_A0A1U7TUU4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H2LEI1_H2LEI1_ORYLA_8090 and tr_A0A1U7S624_A0A1U7S624_ALLSI_38654 are exactly identical! WARNING: Sequences tr_H2LEI1_H2LEI1_ORYLA_8090 and tr_A0A060ZI61_A0A060ZI61_ONCMY_8022 are exactly identical! WARNING: Sequences tr_H2LEI1_H2LEI1_ORYLA_8090 and tr_A0A2U3ZWZ8_A0A2U3ZWZ8_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A2I3GGV7_A0A2I3GGV7_NOMLE_61853 and tr_H2Q0R2_H2Q0R2_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GGV7_A0A2I3GGV7_NOMLE_61853 and sp_Q13753_LAMC2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GGV7_A0A2I3GGV7_NOMLE_61853 and tr_A0A2R9B9I9_A0A2R9B9I9_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3H367_A0A2I3H367_NOMLE_61853 and tr_H2QVU7_H2QVU7_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H367_A0A2I3H367_NOMLE_61853 and tr_H0VW90_H0VW90_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A2I3H367_A0A2I3H367_NOMLE_61853 and sp_P13497_BMP1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H367_A0A2I3H367_NOMLE_61853 and tr_A0A0D9RVG0_A0A0D9RVG0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3H367_A0A2I3H367_NOMLE_61853 and tr_A0A2R8ZJF6_A0A2R8ZJF6_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3H843_A0A2I3H843_NOMLE_61853 and tr_G3REC8_G3REC8_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H843_A0A2I3H843_NOMLE_61853 and sp_Q5RDI1_PAMR1_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H843_A0A2I3H843_NOMLE_61853 and tr_A0A2I3RN69_A0A2I3RN69_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H843_A0A2I3H843_NOMLE_61853 and sp_Q6UXH9_PAMR1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H843_A0A2I3H843_NOMLE_61853 and tr_A0A2R8ZQC7_A0A2R8ZQC7_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_G3R6U9_G3R6U9_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_K7EU46_K7EU46_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_H2QQH0_H2QQH0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_I3MJ85_I3MJ85_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_H0WT13_H0WT13_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and sp_Q9P273_TEN3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_F7EFX8_F7EFX8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_G5CB37_G5CB37_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_G1LNA2_G1LNA2_AILME_9646 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_M3X237_M3X237_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_A0A2I3MVP4_A0A2I3MVP4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_A0A091DTK0_A0A091DTK0_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_A0A0D9S2A8_A0A0D9S2A8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_A0A1S3FTC7_A0A1S3FTC7_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_A0A2K5NA38_A0A2K5NA38_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_A0A2K6BLA7_A0A2K6BLA7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_A0A2K5YSS7_A0A2K5YSS7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_A0A2R9BL22_A0A2R9BL22_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RI36_G1RI36_NOMLE_61853 and tr_A0A2Y9E8Q8_A0A2Y9E8Q8_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_A0A2I2YGV0_A0A2I2YGV0_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_H2QGG4_H2QGG4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and sp_Q7Z7M0_MEGF8_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_F6TNE5_F6TNE5_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_F1RGK2_F1RGK2_PIG_9823 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_G7PXR3_G7PXR3_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_E1BPS6_E1BPS6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_L5L8K3_L5L8K3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_A0A2I3LX80_A0A2I3LX80_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_A0A0D9S165_A0A0D9S165_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_A0A1U7TW26_A0A1U7TW26_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_A0A1U7R6I9_A0A1U7R6I9_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_A0A2K6BEE9_A0A2K6BEE9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_A0A2K5ZMY7_A0A2K5ZMY7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_A0A2R8ZUW9_A0A2R8ZUW9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_A0A2Y9P2H1_A0A2Y9P2H1_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_A0A2Y9EH50_A0A2Y9EH50_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1PV93_G1PV93_MYOLU_59463 and tr_A0A383YYY7_A0A383YYY7_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3HZ57_G3HZ57_CRIGR_10029 and tr_K7GS36_K7GS36_PIG_9823 are exactly identical! WARNING: Sequences tr_G3HZ57_G3HZ57_CRIGR_10029 and tr_G1MG43_G1MG43_AILME_9646 are exactly identical! WARNING: Sequences tr_G3HZ57_G3HZ57_CRIGR_10029 and tr_A0A2U4B6S3_A0A2U4B6S3_TURTR_9739 are exactly identical! WARNING: Sequences tr_G3HZ57_G3HZ57_CRIGR_10029 and tr_A0A2Y9NT41_A0A2Y9NT41_DELLE_9749 are exactly identical! WARNING: Sequences tr_G3HZ57_G3HZ57_CRIGR_10029 and tr_A0A384ARF8_A0A384ARF8_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3QGL8_G3QGL8_GORGO_9595 and tr_H2Q1T2_H2Q1T2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QGL8_G3QGL8_GORGO_9595 and tr_A0A096P459_A0A096P459_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QGL8_G3QGL8_GORGO_9595 and tr_A0A0D9RG63_A0A0D9RG63_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QGL8_G3QGL8_GORGO_9595 and tr_A0A2K5N9G1_A0A2K5N9G1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QGL8_G3QGL8_GORGO_9595 and tr_A0A2K6AFS3_A0A2K6AFS3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QGL8_G3QGL8_GORGO_9595 and tr_A0A2R8Z9X4_A0A2R8Z9X4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QV44_G3QV44_GORGO_9595 and sp_Q16787_LAMA3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QZE3_G3QZE3_GORGO_9595 and tr_A0A2J8QVK7_A0A2J8QVK7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QZE3_G3QZE3_GORGO_9595 and sp_Q13751_LAMB3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QZE3_G3QZE3_GORGO_9595 and tr_A0A1D5QHV8_A0A1D5QHV8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QZE3_G3QZE3_GORGO_9595 and tr_F7H9I3_F7H9I3_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QZE3_G3QZE3_GORGO_9595 and tr_G7NUP0_G7NUP0_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QZE3_G3QZE3_GORGO_9595 and tr_A0A096NF96_A0A096NF96_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QZE3_G3QZE3_GORGO_9595 and tr_A0A0D9RRV2_A0A0D9RRV2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QZE3_G3QZE3_GORGO_9595 and tr_A0A2K5P832_A0A2K5P832_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QZE3_G3QZE3_GORGO_9595 and tr_A0A2K6ANE1_A0A2K6ANE1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QZE3_G3QZE3_GORGO_9595 and tr_A0A2K5Z5R8_A0A2K5Z5R8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QZE3_G3QZE3_GORGO_9595 and tr_A0A2R9A5F9_A0A2R9A5F9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RGA8_G3RGA8_GORGO_9595 and tr_K7CW88_K7CW88_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RGA8_G3RGA8_GORGO_9595 and sp_Q16363_LAMA4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RGA8_G3RGA8_GORGO_9595 and tr_F6PZI2_F6PZI2_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RGA8_G3RGA8_GORGO_9595 and tr_G7P3M4_G7P3M4_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3RGA8_G3RGA8_GORGO_9595 and tr_A0A2K5MCJ4_A0A2K5MCJ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RGA8_G3RGA8_GORGO_9595 and tr_A0A2R9C435_A0A2R9C435_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NA53_H2NA53_PONAB_9601 and tr_F7HHM6_F7HHM6_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2NA53_H2NA53_PONAB_9601 and tr_G7PEQ1_G7PEQ1_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1N4G9_G1N4G9_MELGA_9103 and tr_A0A1V4JGF4_A0A1V4JGF4_PATFA_372326 are exactly identical! WARNING: Sequences tr_H9GDD9_H9GDD9_ANOCA_28377 and tr_K7DZX6_K7DZX6_MONDO_13616 are exactly identical! WARNING: Sequences tr_H9GDD9_H9GDD9_ANOCA_28377 and tr_G3UNM2_G3UNM2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_H9GDD9_H9GDD9_ANOCA_28377 and tr_A0A151P8M8_A0A151P8M8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_H9GDD9_H9GDD9_ANOCA_28377 and tr_A0A3Q0JG42_A0A3Q0JG42_DIACI_121845 are exactly identical! WARNING: Sequences tr_H9GDD9_H9GDD9_ANOCA_28377 and tr_A0A1S3QHD9_A0A1S3QHD9_SALSA_8030 are exactly identical! WARNING: Sequences tr_H9GDD9_H9GDD9_ANOCA_28377 and tr_A0A1S3RFZ6_A0A1S3RFZ6_SALSA_8030 are exactly identical! WARNING: Sequences tr_H9GDD9_H9GDD9_ANOCA_28377 and tr_A0A060YD13_A0A060YD13_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q29L38_Q29L38_DROPS_46245 and tr_B4H8S1_B4H8S1_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2RM39_E2RM39_CANLF_9615 and tr_A0A337RYD6_A0A337RYD6_FELCA_9685 are exactly identical! WARNING: Sequences tr_E2RM39_E2RM39_CANLF_9615 and tr_A0A2Y9IJR1_A0A2Y9IJR1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1Q3H3_F1Q3H3_CANLF_9615 and tr_W5Q415_W5Q415_SHEEP_9940 are exactly identical! WARNING: Sequences tr_F1Q3H3_F1Q3H3_CANLF_9615 and tr_M3WID7_M3WID7_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1Q3H3_F1Q3H3_CANLF_9615 and tr_A0A2U4AMU2_A0A2U4AMU2_TURTR_9739 are exactly identical! WARNING: Sequences tr_F1Q3H3_F1Q3H3_CANLF_9615 and tr_A0A383ZNT5_A0A383ZNT5_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2I3T8I1_A0A2I3T8I1_PANTR_9598 and tr_A0A2R9AK76_A0A2R9AK76_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7EFE4_K7EFE4_ORNAN_9258 and tr_A0A151IDG7_A0A151IDG7_9HYME_456900 are exactly identical! WARNING: Sequences tr_K7EGB9_K7EGB9_ORNAN_9258 and tr_H3CRZ5_H3CRZ5_TETNG_99883 are exactly identical! WARNING: Sequences tr_K7EGB9_K7EGB9_ORNAN_9258 and tr_A0A2J7Q5Q5_A0A2J7Q5Q5_9NEOP_105785 are exactly identical! WARNING: Sequences tr_F7DWJ4_F7DWJ4_MONDO_13616 and tr_G3WN08_G3WN08_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6T858_F6T858_HORSE_9796 and tr_M3W5I5_M3W5I5_FELCA_9685 are exactly identical! WARNING: Sequences tr_F6T858_F6T858_HORSE_9796 and tr_A0A3Q0DDK3_A0A3Q0DDK3_MESAU_10036 are exactly identical! WARNING: Sequences tr_F6T858_F6T858_HORSE_9796 and tr_A0A384BHQ8_A0A384BHQ8_URSMA_29073 are exactly identical! WARNING: Sequences tr_W5PIM5_W5PIM5_SHEEP_9940 and tr_H0X4C4_H0X4C4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_W5PIM5_W5PIM5_SHEEP_9940 and tr_G3STL1_G3STL1_LOXAF_9785 are exactly identical! WARNING: Sequences tr_W5PIM5_W5PIM5_SHEEP_9940 and tr_A0A2U4AW14_A0A2U4AW14_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5PIM5_W5PIM5_SHEEP_9940 and tr_A0A2Y9LLR1_A0A2Y9LLR1_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5PIM5_W5PIM5_SHEEP_9940 and tr_A0A2Y9RYG7_A0A2Y9RYG7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5PIM5_W5PIM5_SHEEP_9940 and tr_A0A384ATR9_A0A384ATR9_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5QC81_W5QC81_SHEEP_9940 and tr_H0VAX8_H0VAX8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A3B5R2B6_A0A3B5R2B6_XIPMA_8083 and tr_A0A087XWH4_A0A087XWH4_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZXA9_M3ZXA9_XIPMA_8083 and tr_A0A087X957_A0A087X957_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NT06_A0A158NT06_ATTCE_12957 and tr_A0A151I3S9_A0A151I3S9_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NT06_A0A158NT06_ATTCE_12957 and tr_A0A195FDY4_A0A195FDY4_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158P213_A0A158P213_ATTCE_12957 and tr_A0A151WHQ5_A0A151WHQ5_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158P213_A0A158P213_ATTCE_12957 and tr_A0A195AW45_A0A195AW45_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158P213_A0A158P213_ATTCE_12957 and tr_A0A195FKA1_A0A195FKA1_9HYME_34720 are exactly identical! WARNING: Sequences tr_I3KM10_I3KM10_ORENI_8128 and tr_A0A2I4CA40_A0A2I4CA40_9TELE_52670 are exactly identical! WARNING: Sequences tr_I3KM10_I3KM10_ORENI_8128 and tr_A0A2U9C758_A0A2U9C758_SCOMX_52904 are exactly identical! WARNING: Sequences tr_I3LXI2_I3LXI2_ICTTR_43179 and tr_H0VMP5_H0VMP5_CAVPO_10141 are exactly identical! WARNING: Sequences tr_I3LXI2_I3LXI2_ICTTR_43179 and tr_A0A091DND9_A0A091DND9_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P25391_LAMA1_HUMAN_9606 and tr_A0A2K5LWF1_A0A2K5LWF1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6ZDE4_F6ZDE4_MACMU_9544 and tr_G7PQE3_G7PQE3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6ZDE4_F6ZDE4_MACMU_9544 and tr_A0A2K6D5K5_A0A2K6D5K5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6ZDE4_F6ZDE4_MACMU_9544 and tr_A0A2K5XHH0_A0A2K5XHH0_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6ZDE9_F6ZDE9_MACMU_9544 and tr_A0A096N141_A0A096N141_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6ZDE9_F6ZDE9_MACMU_9544 and tr_A0A2K6D5R8_A0A2K6D5R8_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6ZDE9_F6ZDE9_MACMU_9544 and tr_A0A2K5ZM98_A0A2K5ZM98_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7BDD8_F7BDD8_MACMU_9544 and tr_G7NXG6_G7NXG6_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7BDD8_F7BDD8_MACMU_9544 and tr_A0A096N8I0_A0A096N8I0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7BDD8_F7BDD8_MACMU_9544 and tr_A0A2K5MHW6_A0A2K5MHW6_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7BDD8_F7BDD8_MACMU_9544 and tr_A0A2K6CFY0_A0A2K6CFY0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7BDD8_F7BDD8_MACMU_9544 and tr_A0A2K5ZQ84_A0A2K5ZQ84_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HAA9_F7HAA9_MACMU_9544 and tr_G7PCU8_G7PCU8_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HAA9_F7HAA9_MACMU_9544 and tr_A0A096MTC0_A0A096MTC0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HAA9_F7HAA9_MACMU_9544 and tr_A0A2K6CP62_A0A2K6CP62_MACNE_9545 are exactly identical! WARNING: Sequences tr_K7G3M8_K7G3M8_PELSI_13735 and tr_H0Z809_H0Z809_TAEGU_59729 are exactly identical! WARNING: Sequences tr_K7G3M8_K7G3M8_PELSI_13735 and tr_A0A151PAL8_A0A151PAL8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_K7G3M8_K7G3M8_PELSI_13735 and tr_A0A0Q3QX21_A0A0Q3QX21_AMAAE_12930 are exactly identical! WARNING: Sequences tr_K7G3M8_K7G3M8_PELSI_13735 and tr_A0A093QC59_A0A093QC59_9PASS_328815 are exactly identical! WARNING: Sequences tr_K7G3M8_K7G3M8_PELSI_13735 and tr_A0A091WGU1_A0A091WGU1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_K7G3M8_K7G3M8_PELSI_13735 and tr_A0A091GBG9_A0A091GBG9_9AVES_55661 are exactly identical! WARNING: Sequences tr_K7G3M8_K7G3M8_PELSI_13735 and tr_A0A0A0AXL3_A0A0A0AXL3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_K7G3M8_K7G3M8_PELSI_13735 and tr_A0A093G1Y1_A0A093G1Y1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_K7G3M8_K7G3M8_PELSI_13735 and tr_A0A3Q0GUB5_A0A3Q0GUB5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_K7G3M8_K7G3M8_PELSI_13735 and tr_A0A218VET1_A0A218VET1_9PASE_299123 are exactly identical! WARNING: Sequences tr_G3UL28_G3UL28_LOXAF_9785 and tr_A0A2Y9DE36_A0A2Y9DE36_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0YSU3_H0YSU3_TAEGU_59729 and tr_U3JYD5_U3JYD5_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZAA2_H0ZAA2_TAEGU_59729 and tr_U3JXM6_U3JXM6_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZAA2_H0ZAA2_TAEGU_59729 and tr_A0A218UWL9_A0A218UWL9_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZIL2_H0ZIL2_TAEGU_59729 and tr_U3KD97_U3KD97_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZIL2_H0ZIL2_TAEGU_59729 and tr_A0A091FQF3_A0A091FQF3_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZIL2_H0ZIL2_TAEGU_59729 and tr_A0A087QR93_A0A087QR93_APTFO_9233 are exactly identical! WARNING: Sequences tr_F4WY67_F4WY67_ACREC_103372 and tr_A0A151X6Q2_A0A151X6Q2_9HYME_64791 are exactly identical! WARNING: Sequences tr_F4WY67_F4WY67_ACREC_103372 and tr_A0A195EHH7_A0A195EHH7_9HYME_471704 are exactly identical! WARNING: Sequences tr_F6YYL6_F6YYL6_CALJA_9483 and tr_A0A2K6D1I2_A0A2K6D1I2_MACNE_9545 are exactly identical! WARNING: Sequences tr_B4LSL5_B4LSL5_DROVI_7244 and tr_B4KEC1_B4KEC1_DROMO_7230 are exactly identical! WARNING: Sequences tr_G1LK74_G1LK74_AILME_9646 and tr_A0A384C802_A0A384C802_URSMA_29073 are exactly identical! WARNING: Sequences tr_F1MUJ4_F1MUJ4_BOVIN_9913 and sp_Q5E9P5_PAMR1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_U3JXA7_U3JXA7_FICAL_59894 and tr_A0A091F2H8_A0A091F2H8_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3JXA7_U3JXA7_FICAL_59894 and tr_A0A087R0S9_A0A087R0S9_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3JXA7_U3JXA7_FICAL_59894 and tr_A0A091VN88_A0A091VN88_OPIHO_30419 are exactly identical! WARNING: Sequences tr_U3JXA7_U3JXA7_FICAL_59894 and tr_A0A0A0A0D3_A0A0A0A0D3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_U3JXA7_U3JXA7_FICAL_59894 and tr_A0A091IIT9_A0A091IIT9_CALAN_9244 are exactly identical! WARNING: Sequences tr_U3JXA7_U3JXA7_FICAL_59894 and tr_A0A218V6Z8_A0A218V6Z8_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A091CPD6_A0A091CPD6_FUKDA_885580 and tr_A0A2K5MVK4_A0A2K5MVK4_CERAT_9531 are exactly identical! WARNING: Sequences tr_U4UGK7_U4UGK7_DENPD_77166 and tr_A0A0N0BE55_A0A0N0BE55_9HYME_166423 are exactly identical! WARNING: Sequences tr_U4UGK7_U4UGK7_DENPD_77166 and tr_A0A0L7QYT1_A0A0L7QYT1_9HYME_597456 are exactly identical! WARNING: Sequences tr_U4UGK7_U4UGK7_DENPD_77166 and tr_A0A154PL42_A0A154PL42_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A151MPZ0_A0A151MPZ0_ALLMI_8496 and tr_A0A3Q0HPM9_A0A3Q0HPM9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NBP1_A0A151NBP1_ALLMI_8496 and tr_A0A3Q0H6S5_A0A3Q0H6S5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3LZY1_A0A0Q3LZY1_AMAAE_12930 and tr_A0A091W6X4_A0A091W6X4_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A194RBX5_A0A194RBX5_PAPMA_76193 and tr_A0A194PLB6_A0A194PLB6_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A093IAR3_A0A093IAR3_STRCA_441894 and tr_A0A099ZJF7_A0A099ZJF7_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A0L7QYU6_A0A0L7QYU6_9HYME_597456 and tr_A0A154PJE8_A0A154PJE8_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A2I0MPH8_A0A2I0MPH8_COLLI_8932 and tr_A0A1V4KEC1_A0A1V4KEC1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MUD0_A0A2I0MUD0_COLLI_8932 and tr_A0A1V4JLU9_A0A1V4JLU9_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A060W1V9_A0A060W1V9_ONCMY_8022 and tr_A0A060XP06_A0A060XP06_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226NJL6_A0A226NJL6_CALSU_9009 and tr_A0A226PGE6_A0A226PGE6_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0PSD3_A0A2D0PSD3_ICTPU_7998 and tr_A0A2D0PU20_A0A2D0PU20_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PSD3_A0A2D0PSD3_ICTPU_7998 and tr_A0A2D0PUY7_A0A2D0PUY7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4B764_A0A2U4B764_TURTR_9739 and tr_A0A2Y9P2G2_A0A2Y9P2G2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CEG0_A0A2U4CEG0_TURTR_9739 and tr_A0A2Y9FS68_A0A2Y9FS68_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4CNF2_A0A2U4CNF2_TURTR_9739 and tr_A0A2Y9MEX4_A0A2Y9MEX4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CNF2_A0A2U4CNF2_TURTR_9739 and tr_A0A2Y9SLJ5_A0A2Y9SLJ5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4CS34_A0A2U4CS34_TURTR_9739 and tr_A0A2Y9PQ73_A0A2Y9PQ73_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3VE92_A0A2U3VE92_ODORO_9708 and tr_A0A2U3XRG8_A0A2U3XRG8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3YUI7_A0A2U3YUI7_LEPWE_9713 and tr_A0A384DBL9_A0A384DBL9_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2Y9M8H0_A0A2Y9M8H0_DELLE_9749 and tr_A0A2Y9S219_A0A2Y9S219_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 302 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q7Z7M0/3_mltree/Q7Z7M0.raxml.reduced.phy Alignment comprises 1 partitions and 44 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 44 / 44 Gaps: 14.46 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q7Z7M0/3_mltree/Q7Z7M0.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 986 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 44 / 3520 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -83895.950726] Initial branch length optimization [00:00:01 -67172.485266] Model parameter optimization (eps = 10.000000) [00:00:14 -67072.129299] AUTODETECT spr round 1 (radius: 5) [00:01:24 -47975.977394] AUTODETECT spr round 2 (radius: 10) [00:02:42 -34990.865081] AUTODETECT spr round 3 (radius: 15) [00:04:04 -28791.789884] AUTODETECT spr round 4 (radius: 20) [00:05:42 -24496.336320] AUTODETECT spr round 5 (radius: 25) [00:07:15 -22683.243975] SPR radius for FAST iterations: 25 (autodetect) [00:07:15 -22683.243975] Model parameter optimization (eps = 3.000000) [00:07:34 -22606.986751] FAST spr round 1 (radius: 25) [00:08:55 -19290.980189] FAST spr round 2 (radius: 25) [00:10:07 -18816.671260] FAST spr round 3 (radius: 25) [00:11:15 -18279.332112] FAST spr round 4 (radius: 25) [00:12:23 -17863.405251] FAST spr round 5 (radius: 25) [00:13:29 -17621.143095] FAST spr round 6 (radius: 25) [00:14:36 -17420.297581] FAST spr round 7 (radius: 25) [00:15:43 -17356.248000] FAST spr round 8 (radius: 25) [00:16:47 -17355.492592] FAST spr round 9 (radius: 25) [00:17:52 -17351.836815] FAST spr round 10 (radius: 25) [00:18:55 -17351.836186] Model parameter optimization (eps = 1.000000) [00:19:00 -17351.018742] SLOW spr round 1 (radius: 5) [00:20:11 -17345.247704] SLOW spr round 2 (radius: 5) [00:21:23 -17343.692372] SLOW spr round 3 (radius: 5) [00:22:33 -17343.689713] SLOW spr round 4 (radius: 10) [00:23:46 -17268.967671] SLOW spr round 5 (radius: 5) [00:25:08 -17262.110823] SLOW spr round 6 (radius: 5) [00:26:24 -17257.836148] SLOW spr round 7 (radius: 5) [00:27:36 -17257.693524] SLOW spr round 8 (radius: 5) [00:28:46 -17257.692882] SLOW spr round 9 (radius: 10) [00:30:01 -17218.120067] SLOW spr round 10 (radius: 5) [00:31:22 -17138.154912] SLOW spr round 11 (radius: 5) [00:32:38 -17093.183491] SLOW spr round 12 (radius: 5) [00:33:52 -17074.021158] SLOW spr round 13 (radius: 5) [00:35:02 -17072.930939] SLOW spr round 14 (radius: 5) [00:36:12 -17072.929290] SLOW spr round 15 (radius: 10) [00:37:23 -17071.631994] SLOW spr round 16 (radius: 5) [00:38:42 -17071.631700] SLOW spr round 17 (radius: 10) [00:40:01 -16957.423953] SLOW spr round 18 (radius: 5) [00:41:21 -16804.207063] SLOW spr round 19 (radius: 5) [00:42:37 -16748.235528] SLOW spr round 20 (radius: 5) [00:43:48 -16748.234310] SLOW spr round 21 (radius: 10) [00:45:00 -16746.225390] SLOW spr round 22 (radius: 5) [00:46:19 -16745.982368] SLOW spr round 23 (radius: 5) [00:47:33 -16745.981142] SLOW spr round 24 (radius: 10) [00:48:44 -16745.981072] SLOW spr round 25 (radius: 15) [00:50:14 -16664.793187] SLOW spr round 26 (radius: 5) [00:51:36 -16658.787400] SLOW spr round 27 (radius: 5) [00:52:51 -16658.787394] SLOW spr round 28 (radius: 10) [00:54:04 -16658.787394] SLOW spr round 29 (radius: 15) [00:55:31 -16658.787393] SLOW spr round 30 (radius: 20) [00:57:14 -16623.993006] SLOW spr round 31 (radius: 5) [00:58:38 -16621.360359] SLOW spr round 32 (radius: 5) [00:59:54 -16621.359570] SLOW spr round 33 (radius: 10) [01:01:07 -16621.359548] SLOW spr round 34 (radius: 15) [01:02:33 -16621.359545] SLOW spr round 35 (radius: 20) [01:04:14 -16621.359544] SLOW spr round 36 (radius: 25) [01:06:08 -16620.285274] SLOW spr round 37 (radius: 5) [01:07:31 -16620.285207] SLOW spr round 38 (radius: 10) [01:08:50 -16614.022628] SLOW spr round 39 (radius: 5) [01:10:08 -16614.022628] SLOW spr round 40 (radius: 10) [01:11:22 -16614.022628] SLOW spr round 41 (radius: 15) [01:12:48 -16614.022628] SLOW spr round 42 (radius: 20) [01:14:29 -16614.022628] SLOW spr round 43 (radius: 25) [01:16:23 -16614.022628] Model parameter optimization (eps = 0.100000) [01:16:29] ML tree search #1, logLikelihood: -16613.646655 [01:16:29 -83470.535352] Initial branch length optimization [01:16:31 -66467.948212] Model parameter optimization (eps = 10.000000) [01:16:46 -66399.094250] AUTODETECT spr round 1 (radius: 5) [01:17:57 -46968.821920] AUTODETECT spr round 2 (radius: 10) [01:19:13 -34527.359360] AUTODETECT spr round 3 (radius: 15) [01:20:35 -28189.003147] AUTODETECT spr round 4 (radius: 20) [01:22:07 -24438.900453] AUTODETECT spr round 5 (radius: 25) [01:23:47 -22364.505201] SPR radius for FAST iterations: 25 (autodetect) [01:23:47 -22364.505201] Model parameter optimization (eps = 3.000000) [01:24:01 -22283.093426] FAST spr round 1 (radius: 25) [01:25:25 -17919.980540] FAST spr round 2 (radius: 25) [01:26:36 -17166.122110] FAST spr round 3 (radius: 25) [01:27:45 -17012.846539] FAST spr round 4 (radius: 25) [01:28:52 -16995.169699] FAST spr round 5 (radius: 25) [01:29:58 -16995.168326] Model parameter optimization (eps = 1.000000) [01:30:06 -16986.813650] SLOW spr round 1 (radius: 5) [01:31:17 -16984.521502] SLOW spr round 2 (radius: 5) [01:32:28 -16983.270888] SLOW spr round 3 (radius: 5) [01:33:39 -16983.134409] SLOW spr round 4 (radius: 5) [01:34:52 -16983.134097] SLOW spr round 5 (radius: 10) [01:36:06 -16978.064211] SLOW spr round 6 (radius: 5) [01:37:27 -16975.365049] SLOW spr round 7 (radius: 5) [01:38:44 -16973.530370] SLOW spr round 8 (radius: 5) [01:39:57 -16973.506451] SLOW spr round 9 (radius: 10) [01:41:09 -16971.745737] SLOW spr round 10 (radius: 5) [01:42:30 -16971.402532] SLOW spr round 11 (radius: 5) [01:43:46 -16970.559646] SLOW spr round 12 (radius: 5) [01:44:58 -16970.558429] SLOW spr round 13 (radius: 10) [01:46:10 -16970.558115] SLOW spr round 14 (radius: 15) [01:47:40 -16968.960398] SLOW spr round 15 (radius: 5) [01:49:02 -16968.959147] SLOW spr round 16 (radius: 10) [01:50:20 -16968.959071] SLOW spr round 17 (radius: 15) [01:51:47 -16968.959044] SLOW spr round 18 (radius: 20) [01:53:31 -16877.842561] SLOW spr round 19 (radius: 5) [01:54:56 -16864.921232] SLOW spr round 20 (radius: 5) [01:56:12 -16863.815050] SLOW spr round 21 (radius: 5) [01:57:24 -16863.814992] SLOW spr round 22 (radius: 10) [01:58:36 -16863.814969] SLOW spr round 23 (radius: 15) [02:00:04 -16863.212977] SLOW spr round 24 (radius: 5) [02:01:25 -16863.093611] SLOW spr round 25 (radius: 5) [02:02:40 -16863.093184] SLOW spr round 26 (radius: 10) [02:03:53 -16863.093164] SLOW spr round 27 (radius: 15) [02:05:19 -16863.093159] SLOW spr round 28 (radius: 20) [02:06:59 -16862.645196] SLOW spr round 29 (radius: 5) [02:08:22 -16862.643145] SLOW spr round 30 (radius: 10) [02:09:40 -16862.642837] SLOW spr round 31 (radius: 15) [02:11:06 -16862.354762] SLOW spr round 32 (radius: 5) [02:12:27 -16862.354742] SLOW spr round 33 (radius: 10) [02:13:43 -16862.354739] SLOW spr round 34 (radius: 15) [02:15:09 -16862.354736] SLOW spr round 35 (radius: 20) [02:16:49 -16862.354734] SLOW spr round 36 (radius: 25) [02:18:43 -16858.015210] SLOW spr round 37 (radius: 5) [02:20:08 -16857.191864] SLOW spr round 38 (radius: 5) [02:21:25 -16856.613984] SLOW spr round 39 (radius: 5) [02:22:37 -16856.613077] SLOW spr round 40 (radius: 10) [02:23:49 -16856.613048] SLOW spr round 41 (radius: 15) [02:25:21 -16726.214668] SLOW spr round 42 (radius: 5) [02:26:46 -16673.357636] SLOW spr round 43 (radius: 5) [02:28:04 -16666.905308] SLOW spr round 44 (radius: 5) [02:29:17 -16666.556026] SLOW spr round 45 (radius: 5) [02:30:27 -16666.555832] SLOW spr round 46 (radius: 10) [02:31:39 -16663.246641] SLOW spr round 47 (radius: 5) [02:32:58 -16662.990969] SLOW spr round 48 (radius: 5) [02:34:12 -16662.990885] SLOW spr round 49 (radius: 10) [02:35:24 -16662.990879] SLOW spr round 50 (radius: 15) [02:36:51 -16661.835462] SLOW spr round 51 (radius: 5) [02:38:12 -16661.835431] SLOW spr round 52 (radius: 10) [02:39:28 -16661.835429] SLOW spr round 53 (radius: 15) [02:40:53 -16661.835427] SLOW spr round 54 (radius: 20) [02:42:32 -16661.835424] SLOW spr round 55 (radius: 25) [02:44:22 -16660.510054] SLOW spr round 56 (radius: 5) [02:45:46 -16659.930172] SLOW spr round 57 (radius: 5) [02:47:04 -16659.846548] SLOW spr round 58 (radius: 10) [02:48:18 -16659.049812] SLOW spr round 59 (radius: 5) [02:49:37 -16659.041457] SLOW spr round 60 (radius: 10) [02:50:52 -16658.825057] SLOW spr round 61 (radius: 5) [02:52:10 -16658.824752] SLOW spr round 62 (radius: 10) [02:53:24 -16658.824748] SLOW spr round 63 (radius: 15) [02:54:50 -16658.824746] SLOW spr round 64 (radius: 20) [02:56:27 -16658.824745] SLOW spr round 65 (radius: 25) [02:58:16 -16658.824743] Model parameter optimization (eps = 0.100000) [02:58:21] ML tree search #2, logLikelihood: -16658.599890 [02:58:21 -84002.347657] Initial branch length optimization [02:58:22 -67717.762409] Model parameter optimization (eps = 10.000000) [02:58:39 -67364.858605] AUTODETECT spr round 1 (radius: 5) [02:59:49 -46464.574123] AUTODETECT spr round 2 (radius: 10) [03:01:11 -33292.066856] AUTODETECT spr round 3 (radius: 15) [03:02:39 -27327.860923] AUTODETECT spr round 4 (radius: 20) [03:04:15 -24589.212917] AUTODETECT spr round 5 (radius: 25) [03:06:03 -23678.827862] SPR radius for FAST iterations: 25 (autodetect) [03:06:03 -23678.827862] Model parameter optimization (eps = 3.000000) [03:06:24 -23524.340528] FAST spr round 1 (radius: 25) [03:07:44 -20217.759828] FAST spr round 2 (radius: 25) [03:08:58 -19994.968953] FAST spr round 3 (radius: 25) [03:10:06 -19881.030758] FAST spr round 4 (radius: 25) [03:11:15 -19646.670176] FAST spr round 5 (radius: 25) [03:12:23 -19611.203708] FAST spr round 6 (radius: 25) [03:13:30 -19610.647795] FAST spr round 7 (radius: 25) [03:14:33 -19610.647066] Model parameter optimization (eps = 1.000000) [03:14:41 -19603.694903] SLOW spr round 1 (radius: 5) [03:15:53 -19597.025607] SLOW spr round 2 (radius: 5) [03:17:06 -19596.851634] SLOW spr round 3 (radius: 5) [03:18:18 -19596.850976] SLOW spr round 4 (radius: 10) [03:19:31 -19595.640762] SLOW spr round 5 (radius: 5) [03:20:54 -19592.559507] SLOW spr round 6 (radius: 5) [03:22:09 -19592.557798] SLOW spr round 7 (radius: 10) [03:23:25 -19592.158496] SLOW spr round 8 (radius: 5) [03:24:45 -19592.158186] SLOW spr round 9 (radius: 10) [03:26:02 -19592.158118] SLOW spr round 10 (radius: 15) [03:27:28 -19579.026920] SLOW spr round 11 (radius: 5) [03:28:53 -19576.367231] SLOW spr round 12 (radius: 5) [03:30:11 -19576.290275] SLOW spr round 13 (radius: 10) [03:31:27 -19575.812443] SLOW spr round 14 (radius: 5) [03:32:49 -19575.697709] SLOW spr round 15 (radius: 5) [03:34:04 -19575.697438] SLOW spr round 16 (radius: 10) [03:35:18 -19575.697428] SLOW spr round 17 (radius: 15) [03:36:46 -19574.917256] SLOW spr round 18 (radius: 5) [03:38:11 -19573.780007] SLOW spr round 19 (radius: 5) [03:39:29 -19572.981055] SLOW spr round 20 (radius: 5) [03:40:43 -19572.980027] SLOW spr round 21 (radius: 10) [03:41:57 -19572.979981] SLOW spr round 22 (radius: 15) [03:43:27 -19569.242739] SLOW spr round 23 (radius: 5) [03:44:50 -19569.240361] SLOW spr round 24 (radius: 10) [03:46:11 -19565.269139] SLOW spr round 25 (radius: 5) [03:47:33 -19565.153886] SLOW spr round 26 (radius: 5) [03:48:48 -19565.132484] SLOW spr round 27 (radius: 10) [03:50:01 -19565.131684] SLOW spr round 28 (radius: 15) [03:51:17 -19564.919748] SLOW spr round 29 (radius: 5) [03:52:41 -19564.503342] SLOW spr round 30 (radius: 5) [03:53:55 -19564.502937] SLOW spr round 31 (radius: 10) [03:55:09 -19564.502920] SLOW spr round 32 (radius: 15) [03:56:36 -19564.502917] SLOW spr round 33 (radius: 20) [03:58:21 -19476.875407] SLOW spr round 34 (radius: 5) [03:59:48 -19439.520568] SLOW spr round 35 (radius: 5) [04:01:06 -19431.820592] SLOW spr round 36 (radius: 5) [04:02:19 -19431.819544] SLOW spr round 37 (radius: 10) [04:03:33 -19430.054928] SLOW spr round 38 (radius: 5) [04:04:53 -19430.053942] SLOW spr round 39 (radius: 10) [04:06:08 -19421.089139] SLOW spr round 40 (radius: 5) [04:07:30 -19407.352799] SLOW spr round 41 (radius: 5) [04:08:45 -19407.352526] SLOW spr round 42 (radius: 10) [04:09:58 -19407.352309] SLOW spr round 43 (radius: 15) [04:11:25 -19406.546665] SLOW spr round 44 (radius: 5) [04:12:48 -19405.342547] SLOW spr round 45 (radius: 5) [04:14:03 -19405.313143] SLOW spr round 46 (radius: 10) [04:15:17 -19405.313036] SLOW spr round 47 (radius: 15) [04:16:42 -19405.312978] SLOW spr round 48 (radius: 20) [04:18:19 -19404.034295] SLOW spr round 49 (radius: 5) [04:19:44 -19404.033810] SLOW spr round 50 (radius: 10) [04:21:03 -19404.033770] SLOW spr round 51 (radius: 15) [04:22:28 -19404.033755] SLOW spr round 52 (radius: 20) [04:24:07 -19404.033747] SLOW spr round 53 (radius: 25) [04:25:56 -19395.799667] SLOW spr round 54 (radius: 5) [04:27:20 -19384.548428] SLOW spr round 55 (radius: 5) [04:28:36 -19384.548421] SLOW spr round 56 (radius: 10) [04:29:51 -19384.548420] SLOW spr round 57 (radius: 15) [04:31:17 -19384.548419] SLOW spr round 58 (radius: 20) [04:32:58 -19384.277054] SLOW spr round 59 (radius: 5) [04:34:21 -19379.862719] SLOW spr round 60 (radius: 5) [04:35:37 -19379.862076] SLOW spr round 61 (radius: 10) [04:36:49 -19379.862058] SLOW spr round 62 (radius: 15) [04:38:15 -19379.862057] SLOW spr round 63 (radius: 20) [04:39:53 -19379.862057] SLOW spr round 64 (radius: 25) [04:41:41 -19379.862056] Model parameter optimization (eps = 0.100000) [04:41:48] ML tree search #3, logLikelihood: -19379.622181 [04:41:48 -83737.983897] Initial branch length optimization [04:41:49 -67185.202546] Model parameter optimization (eps = 10.000000) [04:42:17 -67034.497404] AUTODETECT spr round 1 (radius: 5) [04:43:28 -47908.319165] AUTODETECT spr round 2 (radius: 10) [04:44:46 -34812.896344] AUTODETECT spr round 3 (radius: 15) [04:46:07 -29513.412687] AUTODETECT spr round 4 (radius: 20) [04:47:35 -25426.583622] AUTODETECT spr round 5 (radius: 25) [04:49:07 -23262.324066] SPR radius for FAST iterations: 25 (autodetect) [04:49:07 -23262.324066] Model parameter optimization (eps = 3.000000) [04:49:26 -23170.014432] FAST spr round 1 (radius: 25) [04:50:51 -17935.592571] FAST spr round 2 (radius: 25) [04:52:03 -16685.582922] FAST spr round 3 (radius: 25) [04:53:11 -16337.805217] FAST spr round 4 (radius: 25) [04:54:18 -16299.926041] FAST spr round 5 (radius: 25) [04:55:23 -16296.195552] FAST spr round 6 (radius: 25) [04:56:27 -16296.078115] FAST spr round 7 (radius: 25) [04:57:30 -16296.077247] Model parameter optimization (eps = 1.000000) [04:57:38 -16292.577245] SLOW spr round 1 (radius: 5) [04:58:48 -16289.709596] SLOW spr round 2 (radius: 5) [04:59:58 -16289.031378] SLOW spr round 3 (radius: 5) [05:01:04 -16289.031128] SLOW spr round 4 (radius: 10) [05:02:15 -16285.392654] SLOW spr round 5 (radius: 5) [05:03:35 -16279.618074] SLOW spr round 6 (radius: 5) [05:04:48 -16279.617176] SLOW spr round 7 (radius: 10) [05:06:00 -16278.530036] SLOW spr round 8 (radius: 5) [05:07:17 -16278.530000] SLOW spr round 9 (radius: 10) [05:08:30 -16278.529989] SLOW spr round 10 (radius: 15) [05:10:01 -16150.873902] SLOW spr round 11 (radius: 5) [05:11:23 -16071.623151] SLOW spr round 12 (radius: 5) [05:12:39 -16057.585881] SLOW spr round 13 (radius: 5) [05:13:50 -16057.585647] SLOW spr round 14 (radius: 10) [05:15:02 -16055.518464] SLOW spr round 15 (radius: 5) [05:16:22 -16055.152818] SLOW spr round 16 (radius: 5) [05:17:35 -16054.898967] SLOW spr round 17 (radius: 5) [05:18:44 -16054.898824] SLOW spr round 18 (radius: 10) [05:19:54 -16054.898793] SLOW spr round 19 (radius: 15) [05:21:22 -16051.700996] SLOW spr round 20 (radius: 5) [05:22:43 -16051.150879] SLOW spr round 21 (radius: 5) [05:23:59 -16051.066663] SLOW spr round 22 (radius: 10) [05:25:12 -16049.528207] SLOW spr round 23 (radius: 5) [05:26:31 -16049.527854] SLOW spr round 24 (radius: 10) [05:27:45 -16049.527817] SLOW spr round 25 (radius: 15) [05:29:13 -16045.292227] SLOW spr round 26 (radius: 5) [05:30:35 -16045.078424] SLOW spr round 27 (radius: 5) [05:31:49 -16045.076405] SLOW spr round 28 (radius: 10) [05:33:00 -16045.076297] SLOW spr round 29 (radius: 15) [05:34:28 -16045.076284] SLOW spr round 30 (radius: 20) [05:36:19 -16041.589343] SLOW spr round 31 (radius: 5) [05:37:41 -16041.037034] SLOW spr round 32 (radius: 5) [05:38:55 -16041.036383] SLOW spr round 33 (radius: 10) [05:40:06 -16041.036284] SLOW spr round 34 (radius: 15) [05:41:33 -16041.036270] SLOW spr round 35 (radius: 20) [05:43:21 -16038.693332] SLOW spr round 36 (radius: 5) [05:44:43 -16038.683614] SLOW spr round 37 (radius: 10) [05:46:02 -16038.683306] SLOW spr round 38 (radius: 15) [05:47:28 -16038.683274] SLOW spr round 39 (radius: 20) [05:49:17 -16038.683266] SLOW spr round 40 (radius: 25) [05:51:26 -16036.957948] SLOW spr round 41 (radius: 5) [05:52:47 -16036.956653] SLOW spr round 42 (radius: 10) [05:54:05 -16036.956523] SLOW spr round 43 (radius: 15) [05:55:32 -16036.956519] SLOW spr round 44 (radius: 20) [05:57:21 -16036.956518] SLOW spr round 45 (radius: 25) [05:59:29 -16036.956518] Model parameter optimization (eps = 0.100000) [05:59:37] ML tree search #4, logLikelihood: -16032.958394 [05:59:38 -84517.937590] Initial branch length optimization [05:59:39 -67744.704663] Model parameter optimization (eps = 10.000000) [06:00:02 -67133.590689] AUTODETECT spr round 1 (radius: 5) [06:01:13 -47571.499548] AUTODETECT spr round 2 (radius: 10) [06:02:28 -33723.796419] AUTODETECT spr round 3 (radius: 15) [06:04:01 -26951.412444] AUTODETECT spr round 4 (radius: 20) [06:05:36 -24234.257900] AUTODETECT spr round 5 (radius: 25) [06:07:13 -22946.218572] SPR radius for FAST iterations: 25 (autodetect) [06:07:13 -22946.218572] Model parameter optimization (eps = 3.000000) [06:07:24 -22930.661774] FAST spr round 1 (radius: 25) [06:08:47 -18935.934837] FAST spr round 2 (radius: 25) [06:09:58 -17616.841168] FAST spr round 3 (radius: 25) [06:11:06 -17394.935198] FAST spr round 4 (radius: 25) [06:12:14 -17278.745663] FAST spr round 5 (radius: 25) [06:13:21 -16784.741950] FAST spr round 6 (radius: 25) [06:14:29 -16704.226845] FAST spr round 7 (radius: 25) [06:15:35 -16691.055924] FAST spr round 8 (radius: 25) [06:16:40 -16689.765660] FAST spr round 9 (radius: 25) [06:17:45 -16689.763583] Model parameter optimization (eps = 1.000000) [06:17:53 -16682.694479] SLOW spr round 1 (radius: 5) [06:19:05 -16675.958634] SLOW spr round 2 (radius: 5) [06:20:14 -16673.689608] SLOW spr round 3 (radius: 5) [06:21:26 -16662.817922] SLOW spr round 4 (radius: 5) [06:22:35 -16662.783880] SLOW spr round 5 (radius: 10) [06:23:45 -16659.210293] SLOW spr round 6 (radius: 5) [06:25:06 -16657.647450] SLOW spr round 7 (radius: 5) [06:26:21 -16655.732295] SLOW spr round 8 (radius: 5) [06:27:32 -16655.732283] SLOW spr round 9 (radius: 10) [06:28:43 -16655.732282] SLOW spr round 10 (radius: 15) [06:30:10 -16565.308244] SLOW spr round 11 (radius: 5) [06:31:33 -16542.168589] SLOW spr round 12 (radius: 5) [06:32:48 -16541.954442] SLOW spr round 13 (radius: 5) [06:33:58 -16541.954378] SLOW spr round 14 (radius: 10) [06:35:10 -16541.954375] SLOW spr round 15 (radius: 15) [06:36:36 -16538.981851] SLOW spr round 16 (radius: 5) [06:37:56 -16538.981818] SLOW spr round 17 (radius: 10) [06:39:13 -16537.315466] SLOW spr round 18 (radius: 5) [06:40:29 -16536.648983] SLOW spr round 19 (radius: 5) [06:41:42 -16536.647697] SLOW spr round 20 (radius: 10) [06:42:52 -16536.647631] SLOW spr round 21 (radius: 15) [06:44:16 -16536.647628] SLOW spr round 22 (radius: 20) [06:45:50 -16535.735726] SLOW spr round 23 (radius: 5) [06:47:13 -16535.732865] SLOW spr round 24 (radius: 10) [06:48:30 -16535.392289] SLOW spr round 25 (radius: 5) [06:49:46 -16535.392219] SLOW spr round 26 (radius: 10) [06:50:59 -16535.392218] SLOW spr round 27 (radius: 15) [06:52:21 -16535.392218] SLOW spr round 28 (radius: 20) [06:53:54 -16535.392218] SLOW spr round 29 (radius: 25) [06:55:36 -16532.201704] SLOW spr round 30 (radius: 5) [06:56:59 -16532.194055] SLOW spr round 31 (radius: 10) [06:58:16 -16532.194011] SLOW spr round 32 (radius: 15) [06:59:37 -16531.826266] SLOW spr round 33 (radius: 5) [07:00:58 -16531.825724] SLOW spr round 34 (radius: 10) [07:02:12 -16531.825625] SLOW spr round 35 (radius: 15) [07:03:35 -16531.825605] SLOW spr round 36 (radius: 20) [07:05:10 -16531.825601] SLOW spr round 37 (radius: 25) [07:06:54 -16525.009911] SLOW spr round 38 (radius: 5) [07:08:17 -16524.228549] SLOW spr round 39 (radius: 5) [07:09:32 -16524.227748] SLOW spr round 40 (radius: 10) [07:10:45 -16524.227735] SLOW spr round 41 (radius: 15) [07:12:07 -16524.227735] SLOW spr round 42 (radius: 20) [07:13:41 -16524.227735] SLOW spr round 43 (radius: 25) [07:15:23 -16524.227735] Model parameter optimization (eps = 0.100000) [07:15:28] ML tree search #5, logLikelihood: -16524.081513 [07:15:28 -83849.402317] Initial branch length optimization [07:15:29 -66375.414157] Model parameter optimization (eps = 10.000000) [07:15:56 -66274.311860] AUTODETECT spr round 1 (radius: 5) [07:17:07 -47995.089750] AUTODETECT spr round 2 (radius: 10) [07:18:23 -35431.228218] AUTODETECT spr round 3 (radius: 15) [07:19:48 -27413.091383] AUTODETECT spr round 4 (radius: 20) [07:21:22 -24147.078776] AUTODETECT spr round 5 (radius: 25) [07:23:08 -21390.086146] SPR radius for FAST iterations: 25 (autodetect) [07:23:08 -21390.086146] Model parameter optimization (eps = 3.000000) [07:23:26 -21308.391103] FAST spr round 1 (radius: 25) [07:24:47 -17850.418065] FAST spr round 2 (radius: 25) [07:26:00 -17438.392474] FAST spr round 3 (radius: 25) [07:27:09 -17371.454661] FAST spr round 4 (radius: 25) [07:28:16 -17362.292306] FAST spr round 5 (radius: 25) [07:29:20 -17362.288846] Model parameter optimization (eps = 1.000000) [07:29:29 -17360.197477] SLOW spr round 1 (radius: 5) [07:30:41 -17339.995464] SLOW spr round 2 (radius: 5) [07:31:52 -17338.777701] SLOW spr round 3 (radius: 5) [07:33:02 -17338.630207] SLOW spr round 4 (radius: 5) [07:34:13 -17338.624033] SLOW spr round 5 (radius: 10) [07:35:27 -17337.682418] SLOW spr round 6 (radius: 5) [07:36:47 -17337.681225] SLOW spr round 7 (radius: 10) [07:38:03 -17336.794473] SLOW spr round 8 (radius: 5) [07:39:20 -17336.794465] SLOW spr round 9 (radius: 10) [07:40:35 -17336.794464] SLOW spr round 10 (radius: 15) [07:41:59 -17333.505818] SLOW spr round 11 (radius: 5) [07:43:22 -17333.502341] SLOW spr round 12 (radius: 10) [07:44:39 -17333.501975] SLOW spr round 13 (radius: 15) [07:46:04 -17333.501883] SLOW spr round 14 (radius: 20) [07:47:40 -17333.261127] SLOW spr round 15 (radius: 5) [07:49:02 -17333.258539] SLOW spr round 16 (radius: 10) [07:50:17 -17333.257916] SLOW spr round 17 (radius: 15) [07:51:42 -17333.257742] SLOW spr round 18 (radius: 20) [07:53:19 -17333.257692] SLOW spr round 19 (radius: 25) [07:55:08 -17213.228596] SLOW spr round 20 (radius: 5) [07:56:32 -17149.135410] SLOW spr round 21 (radius: 5) [07:57:50 -17139.934171] SLOW spr round 22 (radius: 5) [07:59:00 -17138.998059] SLOW spr round 23 (radius: 5) [08:00:12 -17138.998050] SLOW spr round 24 (radius: 10) [08:01:25 -17083.280684] SLOW spr round 25 (radius: 5) [08:02:47 -17047.594206] SLOW spr round 26 (radius: 5) [08:04:03 -17047.591801] SLOW spr round 27 (radius: 10) [08:05:14 -17047.591033] SLOW spr round 28 (radius: 15) [08:06:40 -17047.590440] SLOW spr round 29 (radius: 20) [08:08:14 -17047.589870] SLOW spr round 30 (radius: 25) [08:09:58 -17047.589304] Model parameter optimization (eps = 0.100000) [08:10:09] ML tree search #6, logLikelihood: -17046.522833 [08:10:09 -83338.607006] Initial branch length optimization [08:10:10 -66790.470904] Model parameter optimization (eps = 10.000000) [08:10:25 -66701.689607] AUTODETECT spr round 1 (radius: 5) [08:11:36 -47346.410016] AUTODETECT spr round 2 (radius: 10) [08:12:54 -33481.677255] AUTODETECT spr round 3 (radius: 15) [08:14:15 -29211.668096] AUTODETECT spr round 4 (radius: 20) [08:15:55 -25231.470427] AUTODETECT spr round 5 (radius: 25) [08:17:38 -22778.470595] SPR radius for FAST iterations: 25 (autodetect) [08:17:38 -22778.470595] Model parameter optimization (eps = 3.000000) [08:17:58 -22702.839022] FAST spr round 1 (radius: 25) [08:19:22 -18721.889160] FAST spr round 2 (radius: 25) [08:20:35 -18450.222065] FAST spr round 3 (radius: 25) [08:21:43 -18415.388187] FAST spr round 4 (radius: 25) [08:22:48 -18413.474974] FAST spr round 5 (radius: 25) [08:23:52 -18413.474628] Model parameter optimization (eps = 1.000000) [08:24:03 -18409.313921] SLOW spr round 1 (radius: 5) [08:25:13 -18401.867355] SLOW spr round 2 (radius: 5) [08:26:27 -18397.996662] SLOW spr round 3 (radius: 5) [08:27:38 -18397.506842] SLOW spr round 4 (radius: 5) [08:28:49 -18397.503070] SLOW spr round 5 (radius: 10) [08:30:01 -18394.808010] SLOW spr round 6 (radius: 5) [08:31:22 -18393.215144] SLOW spr round 7 (radius: 5) [08:32:37 -18393.214604] SLOW spr round 8 (radius: 10) [08:33:49 -18391.840171] SLOW spr round 9 (radius: 5) [08:35:09 -18391.839405] SLOW spr round 10 (radius: 10) [08:36:25 -18391.839343] SLOW spr round 11 (radius: 15) [08:37:56 -18370.622395] SLOW spr round 12 (radius: 5) [08:39:19 -18369.813557] SLOW spr round 13 (radius: 5) [08:40:35 -18369.812425] SLOW spr round 14 (radius: 10) [08:41:48 -18369.805248] SLOW spr round 15 (radius: 15) [08:43:19 -18369.805202] SLOW spr round 16 (radius: 20) [08:45:10 -18368.269761] SLOW spr round 17 (radius: 5) [08:46:33 -18367.299296] SLOW spr round 18 (radius: 5) [08:47:49 -18367.298307] SLOW spr round 19 (radius: 10) [08:49:03 -18367.298261] SLOW spr round 20 (radius: 15) [08:50:33 -18367.298258] SLOW spr round 21 (radius: 20) [08:52:23 -18367.298258] SLOW spr round 22 (radius: 25) [08:54:20 -18367.230613] Model parameter optimization (eps = 0.100000) [08:54:25] ML tree search #7, logLikelihood: -18366.919954 [08:54:25 -84175.399686] Initial branch length optimization [08:54:27 -67567.167096] Model parameter optimization (eps = 10.000000) [08:54:44 -67424.363963] AUTODETECT spr round 1 (radius: 5) [08:55:54 -47129.991427] AUTODETECT spr round 2 (radius: 10) [08:57:11 -35543.136820] AUTODETECT spr round 3 (radius: 15) [08:58:37 -30083.147682] AUTODETECT spr round 4 (radius: 20) [09:00:10 -26270.805665] AUTODETECT spr round 5 (radius: 25) [09:01:41 -23949.917032] SPR radius for FAST iterations: 25 (autodetect) [09:01:41 -23949.917032] Model parameter optimization (eps = 3.000000) [09:01:57 -23906.788998] FAST spr round 1 (radius: 25) [09:03:14 -20008.218699] FAST spr round 2 (radius: 25) [09:04:23 -19603.771317] FAST spr round 3 (radius: 25) [09:05:30 -19492.625385] FAST spr round 4 (radius: 25) [09:06:37 -19451.072352] FAST spr round 5 (radius: 25) [09:07:43 -19446.159913] FAST spr round 6 (radius: 25) [09:08:47 -19445.850424] FAST spr round 7 (radius: 25) [09:09:51 -19445.849599] Model parameter optimization (eps = 1.000000) [09:09:58 -19444.897590] SLOW spr round 1 (radius: 5) [09:11:08 -19439.865792] SLOW spr round 2 (radius: 5) [09:12:20 -19439.506690] SLOW spr round 3 (radius: 5) [09:13:30 -19439.493323] SLOW spr round 4 (radius: 10) [09:14:45 -19435.178768] SLOW spr round 5 (radius: 5) [09:16:07 -19432.194954] SLOW spr round 6 (radius: 5) [09:17:23 -19432.123987] SLOW spr round 7 (radius: 10) [09:18:37 -19431.979410] SLOW spr round 8 (radius: 5) [09:19:57 -19431.979364] SLOW spr round 9 (radius: 10) [09:21:12 -19431.979341] SLOW spr round 10 (radius: 15) [09:22:29 -19427.107071] SLOW spr round 11 (radius: 5) [09:23:32 -19424.965417] SLOW spr round 12 (radius: 5) [09:24:31 -19424.798044] SLOW spr round 13 (radius: 5) [09:25:25 -19424.796839] SLOW spr round 14 (radius: 10) [09:26:19 -19424.796546] SLOW spr round 15 (radius: 15) [09:27:25 -19424.353368] SLOW spr round 16 (radius: 5) [09:28:26 -19424.352474] SLOW spr round 17 (radius: 10) [09:29:23 -19424.352267] SLOW spr round 18 (radius: 15) [09:30:28 -19424.352208] SLOW spr round 19 (radius: 20) [09:31:42 -19423.866570] SLOW spr round 20 (radius: 5) [09:32:43 -19423.866553] SLOW spr round 21 (radius: 10) [09:33:42 -19423.866537] SLOW spr round 22 (radius: 15) [09:34:47 -19423.866522] SLOW spr round 23 (radius: 20) [09:36:08 -19423.866507] SLOW spr round 24 (radius: 25) [09:37:54 -19422.768750] SLOW spr round 25 (radius: 5) [09:39:15 -19422.767415] SLOW spr round 26 (radius: 10) [09:40:35 -19422.767399] SLOW spr round 27 (radius: 15) [09:42:02 -19422.767383] SLOW spr round 28 (radius: 20) [09:43:41 -19422.767367] SLOW spr round 29 (radius: 25) [09:45:25 -19422.767351] Model parameter optimization (eps = 0.100000) [09:45:29] ML tree search #8, logLikelihood: -19422.669012 [09:45:29 -84321.000953] Initial branch length optimization [09:45:30 -68028.709744] Model parameter optimization (eps = 10.000000) [09:45:51 -67457.700080] AUTODETECT spr round 1 (radius: 5) [09:47:01 -47979.422563] AUTODETECT spr round 2 (radius: 10) [09:48:18 -36548.915508] AUTODETECT spr round 3 (radius: 15) [09:49:40 -28946.836071] AUTODETECT spr round 4 (radius: 20) [09:51:08 -25386.656526] AUTODETECT spr round 5 (radius: 25) [09:53:18 -20602.008093] SPR radius for FAST iterations: 25 (autodetect) [09:53:18 -20602.008093] Model parameter optimization (eps = 3.000000) [09:53:33 -20536.128700] FAST spr round 1 (radius: 25) [09:54:56 -16738.325928] FAST spr round 2 (radius: 25) [09:56:08 -16296.327714] FAST spr round 3 (radius: 25) [09:57:17 -16221.335978] FAST spr round 4 (radius: 25) [09:58:25 -16211.618377] FAST spr round 5 (radius: 25) [09:59:30 -16211.043809] FAST spr round 6 (radius: 25) [10:00:35 -16211.041944] Model parameter optimization (eps = 1.000000) [10:00:46 -16207.058275] SLOW spr round 1 (radius: 5) [10:01:55 -16199.026331] SLOW spr round 2 (radius: 5) [10:03:07 -16192.237534] SLOW spr round 3 (radius: 5) [10:04:19 -16191.719108] SLOW spr round 4 (radius: 5) [10:05:32 -16189.192454] SLOW spr round 5 (radius: 5) [10:06:44 -16187.301831] SLOW spr round 6 (radius: 5) [10:07:57 -16184.167848] SLOW spr round 7 (radius: 5) [10:09:07 -16183.887719] SLOW spr round 8 (radius: 5) [10:10:16 -16183.886861] SLOW spr round 9 (radius: 10) [10:11:30 -16180.698866] SLOW spr round 10 (radius: 5) [10:12:49 -16180.396121] SLOW spr round 11 (radius: 5) [10:14:04 -16180.260266] SLOW spr round 12 (radius: 5) [10:15:15 -16180.258190] SLOW spr round 13 (radius: 10) [10:16:28 -16180.256140] SLOW spr round 14 (radius: 15) [10:17:59 -16176.105721] SLOW spr round 15 (radius: 5) [10:19:22 -16175.630066] SLOW spr round 16 (radius: 5) [10:20:37 -16175.628615] SLOW spr round 17 (radius: 10) [10:21:50 -16175.628559] SLOW spr round 18 (radius: 15) [10:23:19 -16174.779486] SLOW spr round 19 (radius: 5) [10:24:39 -16174.779486] SLOW spr round 20 (radius: 10) [10:25:58 -16174.779486] SLOW spr round 21 (radius: 15) [10:27:26 -16174.779486] SLOW spr round 22 (radius: 20) [10:29:07 -16159.370304] SLOW spr round 23 (radius: 5) [10:30:30 -16159.356061] SLOW spr round 24 (radius: 10) [10:31:49 -16159.228811] SLOW spr round 25 (radius: 5) [10:33:06 -16159.226353] SLOW spr round 26 (radius: 10) [10:34:21 -16159.226041] SLOW spr round 27 (radius: 15) [10:35:47 -16156.959773] SLOW spr round 28 (radius: 5) [10:37:09 -16156.951062] SLOW spr round 29 (radius: 10) [10:38:27 -16156.950851] SLOW spr round 30 (radius: 15) [10:39:55 -16156.950780] SLOW spr round 31 (radius: 20) [10:41:33 -16155.112621] SLOW spr round 32 (radius: 5) [10:42:56 -16153.030278] SLOW spr round 33 (radius: 5) [10:44:12 -16153.029641] SLOW spr round 34 (radius: 10) [10:45:25 -16153.029608] SLOW spr round 35 (radius: 15) [10:46:51 -16153.029606] SLOW spr round 36 (radius: 20) [10:48:28 -16153.029606] SLOW spr round 37 (radius: 25) [10:50:13 -16148.201868] SLOW spr round 38 (radius: 5) [10:51:37 -16148.201666] SLOW spr round 39 (radius: 10) [10:52:56 -16148.201654] SLOW spr round 40 (radius: 15) [10:54:20 -16148.201651] SLOW spr round 41 (radius: 20) [10:55:57 -16147.999432] SLOW spr round 42 (radius: 5) [10:57:19 -16147.999406] SLOW spr round 43 (radius: 10) [10:58:38 -16147.999402] SLOW spr round 44 (radius: 15) [11:00:04 -16147.999401] SLOW spr round 45 (radius: 20) [11:01:42 -16147.999401] SLOW spr round 46 (radius: 25) [11:03:25 -16147.999401] Model parameter optimization (eps = 0.100000) [11:03:33] ML tree search #9, logLikelihood: -16146.853730 [11:03:33 -83784.519931] Initial branch length optimization [11:03:34 -67703.226771] Model parameter optimization (eps = 10.000000) [11:03:54 -67447.781366] AUTODETECT spr round 1 (radius: 5) [11:05:06 -46850.067659] AUTODETECT spr round 2 (radius: 10) [11:06:22 -34468.064328] AUTODETECT spr round 3 (radius: 15) [11:07:50 -29022.300163] AUTODETECT spr round 4 (radius: 20) [11:09:27 -26126.562029] AUTODETECT spr round 5 (radius: 25) [11:11:15 -23899.850374] SPR radius for FAST iterations: 25 (autodetect) [11:11:15 -23899.850374] Model parameter optimization (eps = 3.000000) [11:11:33 -23723.870406] FAST spr round 1 (radius: 25) [11:12:59 -18091.417831] FAST spr round 2 (radius: 25) [11:14:12 -17415.433484] FAST spr round 3 (radius: 25) [11:15:22 -17207.169776] FAST spr round 4 (radius: 25) [11:16:31 -17023.164510] FAST spr round 5 (radius: 25) [11:17:37 -16979.957273] FAST spr round 6 (radius: 25) [11:18:42 -16978.940177] FAST spr round 7 (radius: 25) [11:19:47 -16967.675539] FAST spr round 8 (radius: 25) [11:20:52 -16967.674171] Model parameter optimization (eps = 1.000000) [11:21:03 -16947.311453] SLOW spr round 1 (radius: 5) [11:22:15 -16929.588878] SLOW spr round 2 (radius: 5) [11:23:26 -16929.016818] SLOW spr round 3 (radius: 5) [11:24:34 -16928.120897] SLOW spr round 4 (radius: 5) [11:25:45 -16927.194161] SLOW spr round 5 (radius: 5) [11:26:53 -16927.192681] SLOW spr round 6 (radius: 10) [11:28:06 -16844.591657] SLOW spr round 7 (radius: 5) [11:29:28 -16821.787393] SLOW spr round 8 (radius: 5) [11:30:46 -16816.694002] SLOW spr round 9 (radius: 5) [11:31:58 -16816.689153] SLOW spr round 10 (radius: 10) [11:33:11 -16786.996100] SLOW spr round 11 (radius: 5) [11:34:32 -16748.796869] SLOW spr round 12 (radius: 5) [11:35:47 -16739.674875] SLOW spr round 13 (radius: 5) [11:36:57 -16739.673691] SLOW spr round 14 (radius: 10) [11:38:07 -16735.960963] SLOW spr round 15 (radius: 5) [11:39:27 -16735.960827] SLOW spr round 16 (radius: 10) [11:40:47 -16696.179849] SLOW spr round 17 (radius: 5) [11:42:09 -16680.890944] SLOW spr round 18 (radius: 5) [11:43:24 -16680.887926] SLOW spr round 19 (radius: 10) [11:44:36 -16680.887918] SLOW spr round 20 (radius: 15) [11:46:06 -16677.689023] SLOW spr round 21 (radius: 5) [11:47:29 -16676.301689] SLOW spr round 22 (radius: 5) [11:48:44 -16676.300354] SLOW spr round 23 (radius: 10) [11:49:58 -16676.298409] SLOW spr round 24 (radius: 15) [11:51:28 -16676.298393] SLOW spr round 25 (radius: 20) [11:53:19 -16675.424449] SLOW spr round 26 (radius: 5) [11:54:42 -16670.844838] SLOW spr round 27 (radius: 5) [11:55:59 -16670.693686] SLOW spr round 28 (radius: 5) [11:57:10 -16670.693526] SLOW spr round 29 (radius: 10) [11:58:21 -16670.693522] SLOW spr round 30 (radius: 15) [11:59:53 -16670.693522] SLOW spr round 31 (radius: 20) [12:01:44 -16670.693522] SLOW spr round 32 (radius: 25) [12:03:54 -16583.852891] SLOW spr round 33 (radius: 5) [12:05:18 -16563.018860] SLOW spr round 34 (radius: 5) [12:06:37 -16562.695048] SLOW spr round 35 (radius: 5) [12:07:50 -16562.248590] SLOW spr round 36 (radius: 5) [12:09:00 -16562.246870] SLOW spr round 37 (radius: 10) [12:10:14 -16508.020406] SLOW spr round 38 (radius: 5) [12:11:37 -16454.919608] SLOW spr round 39 (radius: 5) [12:12:53 -16429.582578] SLOW spr round 40 (radius: 5) [12:14:04 -16429.580897] SLOW spr round 41 (radius: 10) [12:15:15 -16427.226867] SLOW spr round 42 (radius: 5) [12:16:35 -16427.226840] SLOW spr round 43 (radius: 10) [12:17:50 -16426.959587] SLOW spr round 44 (radius: 5) [12:19:08 -16426.959556] SLOW spr round 45 (radius: 10) [12:20:24 -16426.959555] SLOW spr round 46 (radius: 15) [12:21:54 -16426.959532] SLOW spr round 47 (radius: 20) [12:23:51 -16334.183801] SLOW spr round 48 (radius: 5) [12:25:15 -16235.578779] SLOW spr round 49 (radius: 5) [12:26:33 -16131.756293] SLOW spr round 50 (radius: 5) [12:27:45 -16085.504745] SLOW spr round 51 (radius: 5) [12:28:57 -16083.658693] SLOW spr round 52 (radius: 5) [12:30:08 -16083.658281] SLOW spr round 53 (radius: 10) [12:31:21 -16069.023198] SLOW spr round 54 (radius: 5) [12:32:42 -16069.008223] SLOW spr round 55 (radius: 10) [12:33:58 -16068.856415] SLOW spr round 56 (radius: 5) [12:35:16 -16068.856408] SLOW spr round 57 (radius: 10) [12:36:31 -16068.856407] SLOW spr round 58 (radius: 15) [12:38:00 -16068.856405] SLOW spr round 59 (radius: 20) [12:39:53 -16068.689326] SLOW spr round 60 (radius: 5) [12:41:17 -16068.687848] SLOW spr round 61 (radius: 10) [12:42:36 -16068.687747] SLOW spr round 62 (radius: 15) [12:44:05 -16068.687739] SLOW spr round 63 (radius: 20) [12:45:58 -16068.294728] SLOW spr round 64 (radius: 5) [12:47:20 -16068.294718] SLOW spr round 65 (radius: 10) [12:48:40 -16068.294718] SLOW spr round 66 (radius: 15) [12:50:10 -16068.294718] SLOW spr round 67 (radius: 20) [12:52:03 -16068.294718] SLOW spr round 68 (radius: 25) [12:54:17 -16066.091300] SLOW spr round 69 (radius: 5) [12:55:42 -16065.434797] SLOW spr round 70 (radius: 5) [12:56:58 -16065.434414] SLOW spr round 71 (radius: 10) [12:58:14 -16064.379235] SLOW spr round 72 (radius: 5) [12:59:35 -16063.863188] SLOW spr round 73 (radius: 5) [13:00:50 -16063.595613] SLOW spr round 74 (radius: 5) [13:02:02 -16063.588914] SLOW spr round 75 (radius: 10) [13:03:13 -16063.587693] SLOW spr round 76 (radius: 15) [13:04:46 -16063.587367] SLOW spr round 77 (radius: 20) [13:06:38 -16063.587275] SLOW spr round 78 (radius: 25) [13:08:55 -16063.587248] Model parameter optimization (eps = 0.100000) [13:09:04] ML tree search #10, logLikelihood: -16061.380689 [13:09:04 -83655.367042] Initial branch length optimization [13:09:05 -67411.427968] Model parameter optimization (eps = 10.000000) [13:09:26 -67083.944520] AUTODETECT spr round 1 (radius: 5) [13:10:37 -47404.764348] AUTODETECT spr round 2 (radius: 10) [13:11:58 -34326.188201] AUTODETECT spr round 3 (radius: 15) [13:13:25 -26274.917343] AUTODETECT spr round 4 (radius: 20) [13:14:58 -22825.328068] AUTODETECT spr round 5 (radius: 25) [13:16:45 -22107.845027] SPR radius for FAST iterations: 25 (autodetect) [13:16:45 -22107.845027] Model parameter optimization (eps = 3.000000) [13:17:01 -21955.981114] FAST spr round 1 (radius: 25) [13:18:23 -18335.306730] FAST spr round 2 (radius: 25) [13:19:36 -17921.800354] FAST spr round 3 (radius: 25) [13:20:44 -17876.233062] FAST spr round 4 (radius: 25) [13:21:50 -17869.409153] FAST spr round 5 (radius: 25) [13:22:54 -17866.454272] FAST spr round 6 (radius: 25) [13:23:57 -17866.426410] Model parameter optimization (eps = 1.000000) [13:24:09 -17862.020831] SLOW spr round 1 (radius: 5) [13:25:20 -17853.768743] SLOW spr round 2 (radius: 5) [13:26:29 -17853.758906] SLOW spr round 3 (radius: 10) [13:27:43 -17831.525413] SLOW spr round 4 (radius: 5) [13:29:06 -17785.471013] SLOW spr round 5 (radius: 5) [13:30:23 -17780.602014] SLOW spr round 6 (radius: 5) [13:31:35 -17778.407101] SLOW spr round 7 (radius: 5) [13:32:45 -17778.406396] SLOW spr round 8 (radius: 10) [13:33:56 -17775.480940] SLOW spr round 9 (radius: 5) [13:35:15 -17774.305814] SLOW spr round 10 (radius: 5) [13:36:30 -17774.305813] SLOW spr round 11 (radius: 10) [13:37:43 -17772.467442] SLOW spr round 12 (radius: 5) [13:39:04 -17771.377341] SLOW spr round 13 (radius: 5) [13:40:18 -17771.375958] SLOW spr round 14 (radius: 10) [13:41:29 -17770.812235] SLOW spr round 15 (radius: 5) [13:42:50 -17769.179714] SLOW spr round 16 (radius: 5) [13:44:03 -17769.179151] SLOW spr round 17 (radius: 10) [13:45:15 -17769.179140] SLOW spr round 18 (radius: 15) [13:46:42 -17761.562802] SLOW spr round 19 (radius: 5) [13:48:06 -17759.672380] SLOW spr round 20 (radius: 5) [13:49:21 -17759.448039] SLOW spr round 21 (radius: 5) [13:50:32 -17759.446309] SLOW spr round 22 (radius: 10) [13:51:44 -17757.119267] SLOW spr round 23 (radius: 5) [13:53:02 -17757.089172] SLOW spr round 24 (radius: 10) [13:54:17 -17757.088497] SLOW spr round 25 (radius: 15) [13:55:43 -17757.088258] SLOW spr round 26 (radius: 20) [13:57:24 -17693.488272] SLOW spr round 27 (radius: 5) [13:58:48 -17673.268700] SLOW spr round 28 (radius: 5) [14:00:04 -17673.268451] SLOW spr round 29 (radius: 10) [14:01:16 -17672.998032] SLOW spr round 30 (radius: 5) [14:02:35 -17672.997945] SLOW spr round 31 (radius: 10) [14:03:51 -17662.817749] SLOW spr round 32 (radius: 5) [14:05:12 -17652.828762] SLOW spr round 33 (radius: 5) [14:06:27 -17648.861149] SLOW spr round 34 (radius: 5) [14:07:38 -17648.617967] SLOW spr round 35 (radius: 5) [14:08:48 -17648.616344] SLOW spr round 36 (radius: 10) [14:09:57 -17645.898752] SLOW spr round 37 (radius: 5) [14:11:17 -17645.897231] SLOW spr round 38 (radius: 10) [14:12:32 -17645.897094] SLOW spr round 39 (radius: 15) [14:13:58 -17643.771167] SLOW spr round 40 (radius: 5) [14:15:20 -17643.755404] SLOW spr round 41 (radius: 10) [14:16:35 -17643.755337] SLOW spr round 42 (radius: 15) [14:17:59 -17643.755335] SLOW spr round 43 (radius: 20) [14:19:37 -17643.755334] SLOW spr round 44 (radius: 25) [14:21:34 -17403.627915] SLOW spr round 45 (radius: 5) [14:22:59 -17203.258822] SLOW spr round 46 (radius: 5) [14:24:16 -17177.987373] SLOW spr round 47 (radius: 5) [14:25:29 -17166.838298] SLOW spr round 48 (radius: 5) [14:26:40 -17166.231574] SLOW spr round 49 (radius: 5) [14:27:50 -17166.201041] SLOW spr round 50 (radius: 10) [14:29:03 -17155.774526] SLOW spr round 51 (radius: 5) [14:30:24 -17148.437710] SLOW spr round 52 (radius: 5) [14:31:39 -17145.391679] SLOW spr round 53 (radius: 5) [14:32:50 -17145.390799] SLOW spr round 54 (radius: 10) [14:34:00 -17143.800293] SLOW spr round 55 (radius: 5) [14:35:20 -17143.394157] SLOW spr round 56 (radius: 5) [14:36:34 -17143.393912] SLOW spr round 57 (radius: 10) [14:37:45 -17143.393552] SLOW spr round 58 (radius: 15) [14:39:11 -17116.107672] SLOW spr round 59 (radius: 5) [14:40:34 -17080.817935] SLOW spr round 60 (radius: 5) [14:41:49 -17080.165534] SLOW spr round 61 (radius: 5) [14:43:01 -17080.163458] SLOW spr round 62 (radius: 10) [14:44:13 -17080.162580] SLOW spr round 63 (radius: 15) [14:45:38 -17078.777572] SLOW spr round 64 (radius: 5) [14:46:59 -17078.725802] SLOW spr round 65 (radius: 10) [14:48:14 -17078.725661] SLOW spr round 66 (radius: 15) [14:49:37 -17078.725655] SLOW spr round 67 (radius: 20) [14:51:14 -17075.628195] SLOW spr round 68 (radius: 5) [14:52:36 -17075.622052] SLOW spr round 69 (radius: 10) [14:53:52 -17075.621907] SLOW spr round 70 (radius: 15) [14:55:15 -17075.621904] SLOW spr round 71 (radius: 20) [14:56:51 -17074.405878] SLOW spr round 72 (radius: 5) [14:58:14 -17073.540521] SLOW spr round 73 (radius: 5) [14:59:30 -17073.540155] SLOW spr round 74 (radius: 10) [15:00:42 -17073.540074] SLOW spr round 75 (radius: 15) [15:02:06 -17073.540056] SLOW spr round 76 (radius: 20) [15:03:44 -17073.028925] SLOW spr round 77 (radius: 5) [15:05:06 -17072.020889] SLOW spr round 78 (radius: 5) [15:06:22 -17072.017500] SLOW spr round 79 (radius: 10) [15:07:34 -17072.016580] SLOW spr round 80 (radius: 15) [15:08:58 -17072.016325] SLOW spr round 81 (radius: 20) [15:10:32 -17072.016250] SLOW spr round 82 (radius: 25) [15:12:16 -17061.141193] SLOW spr round 83 (radius: 5) [15:13:43 -17044.697153] SLOW spr round 84 (radius: 5) [15:15:00 -17043.023310] SLOW spr round 85 (radius: 5) [15:16:13 -17041.453858] SLOW spr round 86 (radius: 5) [15:17:22 -17041.453819] SLOW spr round 87 (radius: 10) [15:18:33 -17041.453815] SLOW spr round 88 (radius: 15) [15:19:57 -17040.477216] SLOW spr round 89 (radius: 5) [15:21:18 -17040.476327] SLOW spr round 90 (radius: 10) [15:22:35 -17040.476279] SLOW spr round 91 (radius: 15) [15:23:58 -17040.476276] SLOW spr round 92 (radius: 20) [15:25:31 -17040.476275] SLOW spr round 93 (radius: 25) [15:27:13 -17039.775064] SLOW spr round 94 (radius: 5) [15:28:34 -17039.774887] SLOW spr round 95 (radius: 10) [15:29:49 -17039.774872] SLOW spr round 96 (radius: 15) [15:31:11 -17039.774869] SLOW spr round 97 (radius: 20) [15:32:43 -17039.774868] SLOW spr round 98 (radius: 25) [15:34:24 -17039.774868] Model parameter optimization (eps = 0.100000) [15:34:31] ML tree search #11, logLikelihood: -17038.640223 [15:34:31 -84422.394344] Initial branch length optimization [15:34:33 -67644.475804] Model parameter optimization (eps = 10.000000) [15:34:52 -67492.376891] AUTODETECT spr round 1 (radius: 5) [15:36:01 -47072.306795] AUTODETECT spr round 2 (radius: 10) [15:37:18 -34986.492076] AUTODETECT spr round 3 (radius: 15) [15:38:41 -27391.937376] AUTODETECT spr round 4 (radius: 20) [15:40:24 -24078.742651] AUTODETECT spr round 5 (radius: 25) [15:42:15 -22765.994925] SPR radius for FAST iterations: 25 (autodetect) [15:42:15 -22765.994925] Model parameter optimization (eps = 3.000000) [15:42:37 -22684.498707] FAST spr round 1 (radius: 25) [15:44:01 -19225.057115] FAST spr round 2 (radius: 25) [15:45:05 -18925.740510] FAST spr round 3 (radius: 25) [15:46:09 -18894.475125] FAST spr round 4 (radius: 25) [15:47:16 -18884.863684] FAST spr round 5 (radius: 25) [15:48:19 -18884.288703] FAST spr round 6 (radius: 25) [15:49:22 -18883.539159] FAST spr round 7 (radius: 25) [15:50:26 -18883.531836] Model parameter optimization (eps = 1.000000) [15:50:36 -18881.509652] SLOW spr round 1 (radius: 5) [15:51:48 -18872.743371] SLOW spr round 2 (radius: 5) [15:53:00 -18868.621319] SLOW spr round 3 (radius: 5) [15:54:11 -18868.528875] SLOW spr round 4 (radius: 10) [15:55:23 -18867.593470] SLOW spr round 5 (radius: 5) [15:56:42 -18866.557976] SLOW spr round 6 (radius: 5) [15:57:57 -18866.557973] SLOW spr round 7 (radius: 10) [15:59:10 -18866.271087] SLOW spr round 8 (radius: 5) [16:00:29 -18865.648670] SLOW spr round 9 (radius: 5) [16:01:44 -18865.646605] SLOW spr round 10 (radius: 10) [16:03:00 -18864.819058] SLOW spr round 11 (radius: 5) [16:04:21 -18864.372783] SLOW spr round 12 (radius: 5) [16:05:36 -18864.372284] SLOW spr round 13 (radius: 10) [16:06:49 -18864.372256] SLOW spr round 14 (radius: 15) [16:08:22 -18863.337776] SLOW spr round 15 (radius: 5) [16:09:44 -18863.336647] SLOW spr round 16 (radius: 10) [16:11:02 -18859.842352] SLOW spr round 17 (radius: 5) [16:12:21 -18859.842314] SLOW spr round 18 (radius: 10) [16:13:38 -18859.842313] SLOW spr round 19 (radius: 15) [16:15:10 -18859.842313] SLOW spr round 20 (radius: 20) [16:17:02 -18856.753088] SLOW spr round 21 (radius: 5) [16:18:28 -18855.036135] SLOW spr round 22 (radius: 5) [16:19:45 -18855.034699] SLOW spr round 23 (radius: 10) [16:21:00 -18855.034076] SLOW spr round 24 (radius: 15) [16:22:33 -18855.033779] SLOW spr round 25 (radius: 20) [16:24:25 -18855.033633] SLOW spr round 26 (radius: 25) [16:26:28 -18852.248614] SLOW spr round 27 (radius: 5) [16:27:54 -18851.452251] SLOW spr round 28 (radius: 5) [16:29:12 -18851.451596] SLOW spr round 29 (radius: 10) [16:30:28 -18851.451402] SLOW spr round 30 (radius: 15) [16:31:58 -18850.705746] SLOW spr round 31 (radius: 5) [16:33:24 -18848.550492] SLOW spr round 32 (radius: 5) [16:34:42 -18848.548966] SLOW spr round 33 (radius: 10) [16:35:58 -18848.548500] SLOW spr round 34 (radius: 15) [16:37:30 -18848.548264] SLOW spr round 35 (radius: 20) [16:39:21 -18848.548138] SLOW spr round 36 (radius: 25) [16:41:22 -18848.548075] Model parameter optimization (eps = 0.100000) [16:41:25] ML tree search #12, logLikelihood: -18848.546853 [16:41:25 -84473.659374] Initial branch length optimization [16:41:26 -67564.267848] Model parameter optimization (eps = 10.000000) [16:41:41 -67458.953644] AUTODETECT spr round 1 (radius: 5) [16:42:53 -47287.362220] AUTODETECT spr round 2 (radius: 10) [16:44:10 -35019.423884] AUTODETECT spr round 3 (radius: 15) [16:45:37 -28714.040061] AUTODETECT spr round 4 (radius: 20) [16:47:10 -25383.782895] AUTODETECT spr round 5 (radius: 25) [16:48:38 -23732.122619] SPR radius for FAST iterations: 25 (autodetect) [16:48:38 -23732.122619] Model parameter optimization (eps = 3.000000) [16:49:01 -23639.526004] FAST spr round 1 (radius: 25) [16:50:26 -20052.822974] FAST spr round 2 (radius: 25) [16:51:40 -19188.657502] FAST spr round 3 (radius: 25) [16:52:49 -18934.632989] FAST spr round 4 (radius: 25) [16:53:56 -18863.204362] FAST spr round 5 (radius: 25) [16:55:02 -18857.988143] FAST spr round 6 (radius: 25) [16:56:07 -18856.535054] FAST spr round 7 (radius: 25) [16:57:11 -18855.912202] FAST spr round 8 (radius: 25) [16:58:15 -18854.874694] FAST spr round 9 (radius: 25) [16:59:17 -18854.477738] FAST spr round 10 (radius: 25) [17:00:21 -18854.476745] Model parameter optimization (eps = 1.000000) [17:00:26 -18853.912061] SLOW spr round 1 (radius: 5) [17:01:36 -18838.625300] SLOW spr round 2 (radius: 5) [17:02:46 -18836.401036] SLOW spr round 3 (radius: 5) [17:03:57 -18836.396755] SLOW spr round 4 (radius: 10) [17:05:09 -18829.724468] SLOW spr round 5 (radius: 5) [17:06:31 -18827.316372] SLOW spr round 6 (radius: 5) [17:07:45 -18827.315468] SLOW spr round 7 (radius: 10) [17:08:57 -18826.270234] SLOW spr round 8 (radius: 5) [17:10:18 -18826.012313] SLOW spr round 9 (radius: 5) [17:11:31 -18826.011801] SLOW spr round 10 (radius: 10) [17:12:43 -18826.011558] SLOW spr round 11 (radius: 15) [17:14:14 -18822.039980] SLOW spr round 12 (radius: 5) [17:15:38 -18815.683656] SLOW spr round 13 (radius: 5) [17:16:54 -18815.084149] SLOW spr round 14 (radius: 5) [17:18:06 -18815.083302] SLOW spr round 15 (radius: 10) [17:19:17 -18752.537757] SLOW spr round 16 (radius: 5) [17:20:38 -18726.409378] SLOW spr round 17 (radius: 5) [17:21:51 -18726.409327] SLOW spr round 18 (radius: 10) [17:23:04 -18726.409308] SLOW spr round 19 (radius: 15) [17:24:34 -18726.409284] SLOW spr round 20 (radius: 20) [17:26:21 -18724.467878] SLOW spr round 21 (radius: 5) [17:27:44 -18724.210701] SLOW spr round 22 (radius: 5) [17:29:00 -18724.210516] SLOW spr round 23 (radius: 10) [17:30:14 -18724.210327] SLOW spr round 24 (radius: 15) [17:31:42 -18724.210314] SLOW spr round 25 (radius: 20) [17:33:30 -18723.295838] SLOW spr round 26 (radius: 5) [17:34:55 -18722.847375] SLOW spr round 27 (radius: 5) [17:36:11 -18722.847033] SLOW spr round 28 (radius: 10) [17:37:26 -18722.694520] SLOW spr round 29 (radius: 5) [17:38:45 -18722.472325] SLOW spr round 30 (radius: 5) [17:39:58 -18722.471825] SLOW spr round 31 (radius: 10) [17:41:10 -18722.464185] SLOW spr round 32 (radius: 15) [17:42:40 -18722.464156] SLOW spr round 33 (radius: 20) [17:44:29 -18721.198365] SLOW spr round 34 (radius: 5) [17:45:54 -18719.746519] SLOW spr round 35 (radius: 5) [17:47:10 -18719.547843] SLOW spr round 36 (radius: 5) [17:48:22 -18719.547621] SLOW spr round 37 (radius: 10) [17:49:33 -18719.547594] SLOW spr round 38 (radius: 15) [17:51:02 -18719.547587] SLOW spr round 39 (radius: 20) [17:52:50 -18719.547585] SLOW spr round 40 (radius: 25) [17:54:53 -18700.738413] SLOW spr round 41 (radius: 5) [17:56:17 -18697.523056] SLOW spr round 42 (radius: 5) [17:57:35 -18690.484336] SLOW spr round 43 (radius: 5) [17:58:49 -18690.484144] SLOW spr round 44 (radius: 10) [18:00:00 -18690.484070] SLOW spr round 45 (radius: 15) [18:01:30 -18690.483892] SLOW spr round 46 (radius: 20) [18:03:16 -18690.024433] SLOW spr round 47 (radius: 5) [18:04:40 -18689.954446] SLOW spr round 48 (radius: 10) [18:05:58 -18688.341571] SLOW spr round 49 (radius: 5) [18:07:16 -18688.341554] SLOW spr round 50 (radius: 10) [18:08:30 -18688.341551] SLOW spr round 51 (radius: 15) [18:09:57 -18688.341550] SLOW spr round 52 (radius: 20) [18:11:43 -18688.341549] SLOW spr round 53 (radius: 25) [18:13:41 -18688.341413] Model parameter optimization (eps = 0.100000) [18:13:47] ML tree search #13, logLikelihood: -18688.243043 [18:13:47 -84469.869098] Initial branch length optimization [18:13:49 -67634.736234] Model parameter optimization (eps = 10.000000) [18:14:05 -67542.424204] AUTODETECT spr round 1 (radius: 5) [18:15:15 -47618.444812] AUTODETECT spr round 2 (radius: 10) [18:16:31 -35857.275498] AUTODETECT spr round 3 (radius: 15) [18:17:53 -29010.961446] AUTODETECT spr round 4 (radius: 20) [18:19:24 -27045.116820] AUTODETECT spr round 5 (radius: 25) [18:21:09 -24802.903728] SPR radius for FAST iterations: 25 (autodetect) [18:21:09 -24802.903728] Model parameter optimization (eps = 3.000000) [18:21:22 -24731.131120] FAST spr round 1 (radius: 25) [18:22:48 -19485.510580] FAST spr round 2 (radius: 25) [18:24:03 -17827.312386] FAST spr round 3 (radius: 25) [18:25:10 -17281.814484] FAST spr round 4 (radius: 25) [18:26:17 -17243.702317] FAST spr round 5 (radius: 25) [18:27:20 -17238.317682] FAST spr round 6 (radius: 25) [18:28:23 -17238.316106] Model parameter optimization (eps = 1.000000) [18:28:35 -17227.242834] SLOW spr round 1 (radius: 5) [18:29:46 -17214.046931] SLOW spr round 2 (radius: 5) [18:30:58 -17212.406548] SLOW spr round 3 (radius: 5) [18:32:09 -17212.405974] SLOW spr round 4 (radius: 10) [18:33:23 -17200.219106] SLOW spr round 5 (radius: 5) [18:34:43 -17199.814285] SLOW spr round 6 (radius: 5) [18:35:59 -17199.813733] SLOW spr round 7 (radius: 10) [18:37:12 -17197.968533] SLOW spr round 8 (radius: 5) [18:38:34 -17196.566201] SLOW spr round 9 (radius: 5) [18:39:49 -17196.565608] SLOW spr round 10 (radius: 10) [18:41:02 -17196.565513] SLOW spr round 11 (radius: 15) [18:42:33 -17138.239172] SLOW spr round 12 (radius: 5) [18:43:54 -17138.236434] SLOW spr round 13 (radius: 10) [18:45:12 -17137.792918] SLOW spr round 14 (radius: 5) [18:46:30 -17137.790316] SLOW spr round 15 (radius: 10) [18:47:46 -17137.790153] SLOW spr round 16 (radius: 15) [18:49:14 -17137.790031] SLOW spr round 17 (radius: 20) [18:50:54 -17137.006892] SLOW spr round 18 (radius: 5) [18:52:17 -17136.185843] SLOW spr round 19 (radius: 5) [18:53:34 -17136.184932] SLOW spr round 20 (radius: 10) [18:54:47 -17136.184448] SLOW spr round 21 (radius: 15) [18:56:14 -17136.184147] SLOW spr round 22 (radius: 20) [18:57:54 -17136.183939] SLOW spr round 23 (radius: 25) [18:59:47 -17042.745205] SLOW spr round 24 (radius: 5) [19:01:12 -17011.369838] SLOW spr round 25 (radius: 5) [19:02:30 -17009.619982] SLOW spr round 26 (radius: 5) [19:03:41 -17009.619809] SLOW spr round 27 (radius: 10) [19:04:52 -17009.075395] SLOW spr round 28 (radius: 5) [19:06:12 -17009.074428] SLOW spr round 29 (radius: 10) [19:07:29 -17008.064120] SLOW spr round 30 (radius: 5) [19:08:48 -17008.063918] SLOW spr round 31 (radius: 10) [19:10:03 -17008.063813] SLOW spr round 32 (radius: 15) [19:11:29 -17008.063711] SLOW spr round 33 (radius: 20) [19:13:09 -17008.063610] SLOW spr round 34 (radius: 25) [19:14:59 -17008.063509] Model parameter optimization (eps = 0.100000) [19:15:08] ML tree search #14, logLikelihood: -17007.906382 [19:15:08 -84333.210402] Initial branch length optimization [19:15:10 -68047.876174] Model parameter optimization (eps = 10.000000) [19:15:27 -67944.820330] AUTODETECT spr round 1 (radius: 5) [19:16:40 -46948.236632] AUTODETECT spr round 2 (radius: 10) [19:17:56 -35386.191408] AUTODETECT spr round 3 (radius: 15) [19:19:19 -27756.852335] AUTODETECT spr round 4 (radius: 20) [19:20:53 -24881.500021] AUTODETECT spr round 5 (radius: 25) [19:22:42 -22245.233744] SPR radius for FAST iterations: 25 (autodetect) [19:22:42 -22245.233744] Model parameter optimization (eps = 3.000000) [19:22:58 -22183.892263] FAST spr round 1 (radius: 25) [19:24:26 -17188.931746] FAST spr round 2 (radius: 25) [19:25:41 -16624.782127] FAST spr round 3 (radius: 25) [19:26:51 -16517.009745] FAST spr round 4 (radius: 25) [19:27:57 -16498.398567] FAST spr round 5 (radius: 25) [19:29:01 -16497.142098] FAST spr round 6 (radius: 25) [19:30:05 -16497.140606] Model parameter optimization (eps = 1.000000) [19:30:14 -16495.515111] SLOW spr round 1 (radius: 5) [19:31:24 -16487.612087] SLOW spr round 2 (radius: 5) [19:32:35 -16484.720767] SLOW spr round 3 (radius: 5) [19:33:45 -16484.720259] SLOW spr round 4 (radius: 10) [19:34:57 -16478.579154] SLOW spr round 5 (radius: 5) [19:36:16 -16478.519854] SLOW spr round 6 (radius: 10) [19:37:33 -16471.295074] SLOW spr round 7 (radius: 5) [19:38:53 -16459.276497] SLOW spr round 8 (radius: 5) [19:40:06 -16459.188421] SLOW spr round 9 (radius: 10) [19:41:19 -16458.648925] SLOW spr round 10 (radius: 5) [19:42:38 -16458.648572] SLOW spr round 11 (radius: 10) [19:43:53 -16458.648514] SLOW spr round 12 (radius: 15) [19:45:21 -16457.960200] SLOW spr round 13 (radius: 5) [19:46:42 -16457.959668] SLOW spr round 14 (radius: 10) [19:47:58 -16457.959639] SLOW spr round 15 (radius: 15) [19:49:25 -16457.917054] SLOW spr round 16 (radius: 20) [19:51:16 -16456.260095] SLOW spr round 17 (radius: 5) [19:52:39 -16455.946239] SLOW spr round 18 (radius: 5) [19:53:55 -16455.945185] SLOW spr round 19 (radius: 10) [19:55:09 -16454.476657] SLOW spr round 20 (radius: 5) [19:56:28 -16454.474038] SLOW spr round 21 (radius: 10) [19:57:44 -16453.647256] SLOW spr round 22 (radius: 5) [19:59:04 -16453.646059] SLOW spr round 23 (radius: 10) [20:00:20 -16452.955444] SLOW spr round 24 (radius: 5) [20:01:38 -16452.949939] SLOW spr round 25 (radius: 10) [20:02:52 -16452.949271] SLOW spr round 26 (radius: 15) [20:04:20 -16452.949195] SLOW spr round 27 (radius: 20) [20:06:12 -16452.949190] SLOW spr round 28 (radius: 25) [20:08:27 -16452.261945] SLOW spr round 29 (radius: 5) [20:09:50 -16452.261944] SLOW spr round 30 (radius: 10) [20:11:07 -16452.261944] SLOW spr round 31 (radius: 15) [20:12:36 -16452.261944] SLOW spr round 32 (radius: 20) [20:14:28 -16452.261944] SLOW spr round 33 (radius: 25) [20:16:42 -16452.261944] Model parameter optimization (eps = 0.100000) [20:16:49] ML tree search #15, logLikelihood: -16451.981593 [20:16:49 -83919.497149] Initial branch length optimization [20:16:50 -67701.188328] Model parameter optimization (eps = 10.000000) [20:17:07 -67132.822562] AUTODETECT spr round 1 (radius: 5) [20:18:16 -47104.183922] AUTODETECT spr round 2 (radius: 10) [20:19:33 -34847.171687] AUTODETECT spr round 3 (radius: 15) [20:20:55 -27172.896001] AUTODETECT spr round 4 (radius: 20) [20:22:21 -24683.902604] AUTODETECT spr round 5 (radius: 25) [20:23:49 -22830.630173] SPR radius for FAST iterations: 25 (autodetect) [20:23:49 -22830.630173] Model parameter optimization (eps = 3.000000) [20:24:02 -22762.065948] FAST spr round 1 (radius: 25) [20:25:22 -18040.489058] FAST spr round 2 (radius: 25) [20:26:33 -17055.047895] FAST spr round 3 (radius: 25) [20:27:42 -16934.773779] FAST spr round 4 (radius: 25) [20:28:49 -16922.233917] FAST spr round 5 (radius: 25) [20:29:54 -16920.984169] FAST spr round 6 (radius: 25) [20:30:57 -16920.983402] Model parameter optimization (eps = 1.000000) [20:31:08 -16918.767062] SLOW spr round 1 (radius: 5) [20:32:18 -16916.188691] SLOW spr round 2 (radius: 5) [20:33:30 -16911.744725] SLOW spr round 3 (radius: 5) [20:34:42 -16911.275649] SLOW spr round 4 (radius: 5) [20:35:54 -16911.275361] SLOW spr round 5 (radius: 10) [20:37:08 -16907.532864] SLOW spr round 6 (radius: 5) [20:38:27 -16907.532585] SLOW spr round 7 (radius: 10) [20:39:44 -16899.761676] SLOW spr round 8 (radius: 5) [20:41:04 -16899.265817] SLOW spr round 9 (radius: 5) [20:42:20 -16899.255846] SLOW spr round 10 (radius: 10) [20:43:33 -16899.255783] SLOW spr round 11 (radius: 15) [20:44:59 -16895.128747] SLOW spr round 12 (radius: 5) [20:46:23 -16893.967576] SLOW spr round 13 (radius: 5) [20:47:38 -16893.655068] SLOW spr round 14 (radius: 5) [20:48:51 -16893.654958] SLOW spr round 15 (radius: 10) [20:50:04 -16893.654936] SLOW spr round 16 (radius: 15) [20:51:31 -16893.654930] SLOW spr round 17 (radius: 20) [20:53:07 -16891.724616] SLOW spr round 18 (radius: 5) [20:54:30 -16889.494582] SLOW spr round 19 (radius: 5) [20:55:46 -16889.483822] SLOW spr round 20 (radius: 10) [20:57:01 -16889.483254] SLOW spr round 21 (radius: 15) [20:58:26 -16889.482832] SLOW spr round 22 (radius: 20) [21:00:03 -16889.482518] SLOW spr round 23 (radius: 25) [21:01:54 -16882.788543] SLOW spr round 24 (radius: 5) [21:03:17 -16882.787119] SLOW spr round 25 (radius: 10) [21:04:36 -16882.786394] SLOW spr round 26 (radius: 15) [21:06:01 -16882.452476] SLOW spr round 27 (radius: 5) [21:07:22 -16878.907018] SLOW spr round 28 (radius: 5) [21:08:38 -16878.904093] SLOW spr round 29 (radius: 10) [21:09:49 -16878.903828] SLOW spr round 30 (radius: 15) [21:11:15 -16878.903798] SLOW spr round 31 (radius: 20) [21:12:54 -16878.903793] SLOW spr round 32 (radius: 25) [21:14:49 -16878.903792] Model parameter optimization (eps = 0.100000) [21:14:55] ML tree search #16, logLikelihood: -16878.726956 [21:14:55 -83944.142046] Initial branch length optimization [21:14:56 -67563.514476] Model parameter optimization (eps = 10.000000) [21:15:11 -67478.202413] AUTODETECT spr round 1 (radius: 5) [21:16:21 -46865.847359] AUTODETECT spr round 2 (radius: 10) [21:17:37 -35198.585675] AUTODETECT spr round 3 (radius: 15) [21:18:58 -28050.597921] AUTODETECT spr round 4 (radius: 20) [21:20:30 -25310.680763] AUTODETECT spr round 5 (radius: 25) [21:22:05 -22611.998905] SPR radius for FAST iterations: 25 (autodetect) [21:22:05 -22611.998905] Model parameter optimization (eps = 3.000000) [21:22:25 -22499.067566] FAST spr round 1 (radius: 25) [21:23:45 -19156.726447] FAST spr round 2 (radius: 25) [21:24:58 -18876.311279] FAST spr round 3 (radius: 25) [21:26:08 -18781.104697] FAST spr round 4 (radius: 25) [21:27:16 -18753.588464] FAST spr round 5 (radius: 25) [21:28:20 -18752.139708] FAST spr round 6 (radius: 25) [21:29:24 -18752.138678] Model parameter optimization (eps = 1.000000) [21:29:28 -18751.991594] SLOW spr round 1 (radius: 5) [21:30:39 -18745.920614] SLOW spr round 2 (radius: 5) [21:31:50 -18744.722226] SLOW spr round 3 (radius: 5) [21:33:03 -18744.720954] SLOW spr round 4 (radius: 10) [21:34:17 -18741.693833] SLOW spr round 5 (radius: 5) [21:35:38 -18740.583124] SLOW spr round 6 (radius: 5) [21:36:55 -18738.229271] SLOW spr round 7 (radius: 5) [21:38:06 -18738.228773] SLOW spr round 8 (radius: 10) [21:39:20 -18737.987142] SLOW spr round 9 (radius: 5) [21:40:42 -18737.909426] SLOW spr round 10 (radius: 10) [21:42:01 -18737.425564] SLOW spr round 11 (radius: 5) [21:43:21 -18737.147894] SLOW spr round 12 (radius: 5) [21:44:37 -18737.047402] SLOW spr round 13 (radius: 5) [21:45:49 -18737.047119] SLOW spr round 14 (radius: 10) [21:47:01 -18736.558973] SLOW spr round 15 (radius: 5) [21:48:21 -18736.558316] SLOW spr round 16 (radius: 10) [21:49:39 -18736.558275] SLOW spr round 17 (radius: 15) [21:51:10 -18730.566492] SLOW spr round 18 (radius: 5) [21:52:33 -18730.317157] SLOW spr round 19 (radius: 5) [21:53:48 -18730.313254] SLOW spr round 20 (radius: 10) [21:55:02 -18726.367071] SLOW spr round 21 (radius: 5) [21:56:21 -18726.365511] SLOW spr round 22 (radius: 10) [21:57:38 -18726.365223] SLOW spr round 23 (radius: 15) [21:59:07 -18726.365170] SLOW spr round 24 (radius: 20) [22:00:48 -18723.178397] SLOW spr round 25 (radius: 5) [22:02:11 -18722.635624] SLOW spr round 26 (radius: 5) [22:03:28 -18722.632733] SLOW spr round 27 (radius: 10) [22:04:42 -18722.632306] SLOW spr round 28 (radius: 15) [22:06:12 -18722.632237] SLOW spr round 29 (radius: 20) [22:07:53 -18722.632229] SLOW spr round 30 (radius: 25) [22:09:40 -18720.523425] SLOW spr round 31 (radius: 5) [22:11:04 -18719.372452] SLOW spr round 32 (radius: 5) [22:12:21 -18719.372341] SLOW spr round 33 (radius: 10) [22:13:37 -18718.121895] SLOW spr round 34 (radius: 5) [22:14:57 -18717.474307] SLOW spr round 35 (radius: 5) [22:16:11 -18717.473764] SLOW spr round 36 (radius: 10) [22:17:22 -18717.473727] SLOW spr round 37 (radius: 15) [22:18:52 -18716.612102] SLOW spr round 38 (radius: 5) [22:20:13 -18716.609861] SLOW spr round 39 (radius: 10) [22:21:30 -18716.609252] SLOW spr round 40 (radius: 15) [22:22:58 -18716.609073] SLOW spr round 41 (radius: 20) [22:24:39 -18716.609020] SLOW spr round 42 (radius: 25) [22:26:28 -18715.927494] SLOW spr round 43 (radius: 5) [22:27:52 -18715.927447] SLOW spr round 44 (radius: 10) [22:29:11 -18715.927441] SLOW spr round 45 (radius: 15) [22:30:40 -18715.927440] SLOW spr round 46 (radius: 20) [22:32:23 -18715.927439] SLOW spr round 47 (radius: 25) [22:34:13 -18715.927438] Model parameter optimization (eps = 0.100000) [22:34:18] ML tree search #17, logLikelihood: -18715.777954 [22:34:18 -83182.336628] Initial branch length optimization [22:34:19 -67291.647300] Model parameter optimization (eps = 10.000000) [22:34:36 -67007.068497] AUTODETECT spr round 1 (radius: 5) [22:35:46 -45502.154804] AUTODETECT spr round 2 (radius: 10) [22:36:55 -33132.021000] AUTODETECT spr round 3 (radius: 15) [22:38:12 -26174.662397] AUTODETECT spr round 4 (radius: 20) [22:39:41 -24005.829796] AUTODETECT spr round 5 (radius: 25) [22:41:17 -22347.211201] SPR radius for FAST iterations: 25 (autodetect) [22:41:17 -22347.211201] Model parameter optimization (eps = 3.000000) [22:41:35 -22215.705804] FAST spr round 1 (radius: 25) [22:42:49 -17501.645850] FAST spr round 2 (radius: 25) [22:43:55 -16905.343446] FAST spr round 3 (radius: 25) [22:44:57 -16757.673475] FAST spr round 4 (radius: 25) [22:45:57 -16747.736058] FAST spr round 5 (radius: 25) [22:46:55 -16747.647638] Model parameter optimization (eps = 1.000000) [22:47:03 -16728.118795] SLOW spr round 1 (radius: 5) [22:48:08 -16722.721735] SLOW spr round 2 (radius: 5) [22:49:12 -16720.974668] SLOW spr round 3 (radius: 5) [22:50:15 -16720.956008] SLOW spr round 4 (radius: 10) [22:51:19 -16719.516160] SLOW spr round 5 (radius: 5) [22:52:31 -16719.020039] SLOW spr round 6 (radius: 5) [22:53:37 -16719.019419] SLOW spr round 7 (radius: 10) [22:54:42 -16718.990680] SLOW spr round 8 (radius: 15) [22:55:59 -16711.201812] SLOW spr round 9 (radius: 5) [22:57:12 -16710.836829] SLOW spr round 10 (radius: 5) [22:58:24 -16710.836076] SLOW spr round 11 (radius: 10) [22:59:30 -16710.835911] SLOW spr round 12 (radius: 15) [23:00:48 -16710.835829] SLOW spr round 13 (radius: 20) [23:02:14 -16710.078751] SLOW spr round 14 (radius: 5) [23:03:34 -16710.077546] SLOW spr round 15 (radius: 10) [23:04:46 -16709.870249] SLOW spr round 16 (radius: 5) [23:05:58 -16709.870206] SLOW spr round 17 (radius: 10) [23:07:07 -16709.870031] SLOW spr round 18 (radius: 15) [23:08:26 -16709.870019] SLOW spr round 19 (radius: 20) [23:09:51 -16709.870012] SLOW spr round 20 (radius: 25) [23:11:22 -16706.442274] SLOW spr round 21 (radius: 5) [23:12:40 -16705.803492] SLOW spr round 22 (radius: 5) [23:13:54 -16705.802424] SLOW spr round 23 (radius: 10) [23:15:02 -16705.291699] SLOW spr round 24 (radius: 5) [23:16:15 -16705.291044] SLOW spr round 25 (radius: 10) [23:17:26 -16705.290973] SLOW spr round 26 (radius: 15) [23:18:45 -16705.012926] SLOW spr round 27 (radius: 5) [23:20:05 -16705.012737] SLOW spr round 28 (radius: 10) [23:21:24 -16704.902932] SLOW spr round 29 (radius: 5) [23:22:45 -16704.395874] SLOW spr round 30 (radius: 5) [23:24:01 -16704.394559] SLOW spr round 31 (radius: 10) [23:25:15 -16704.393712] SLOW spr round 32 (radius: 15) [23:26:38 -16704.393027] SLOW spr round 33 (radius: 20) [23:28:09 -16703.434260] SLOW spr round 34 (radius: 5) [23:29:29 -16703.433541] SLOW spr round 35 (radius: 10) [23:30:42 -16700.280091] SLOW spr round 36 (radius: 5) [23:31:56 -16700.279766] SLOW spr round 37 (radius: 10) [23:33:06 -16700.279762] SLOW spr round 38 (radius: 15) [23:34:24 -16700.279761] SLOW spr round 39 (radius: 20) [23:35:53 -16700.279761] SLOW spr round 40 (radius: 25) [23:37:32 -16695.256393] SLOW spr round 41 (radius: 5) [23:38:48 -16695.247590] SLOW spr round 42 (radius: 10) [23:40:03 -16695.247196] SLOW spr round 43 (radius: 15) [23:41:25 -16694.896799] SLOW spr round 44 (radius: 5) [23:42:42 -16694.896709] SLOW spr round 45 (radius: 10) [23:43:54 -16694.896623] SLOW spr round 46 (radius: 15) [23:45:11 -16694.896539] SLOW spr round 47 (radius: 20) [23:46:35 -16694.632756] SLOW spr round 48 (radius: 5) [23:47:51 -16694.631779] SLOW spr round 49 (radius: 10) [23:49:02 -16694.631658] SLOW spr round 50 (radius: 15) [23:50:19 -16694.631572] SLOW spr round 51 (radius: 20) [23:51:45 -16694.631488] SLOW spr round 52 (radius: 25) [23:53:15 -16694.631405] Model parameter optimization (eps = 0.100000) [23:53:18] ML tree search #18, logLikelihood: -16694.577778 [23:53:18 -84713.704980] Initial branch length optimization [23:53:19 -68106.043196] Model parameter optimization (eps = 10.000000) [23:53:44 -67508.949295] AUTODETECT spr round 1 (radius: 5) [23:54:49 -47566.211800] AUTODETECT spr round 2 (radius: 10) [23:56:00 -33977.290772] AUTODETECT spr round 3 (radius: 15) [23:57:20 -27536.724775] AUTODETECT spr round 4 (radius: 20) [23:58:50 -23391.592109] AUTODETECT spr round 5 (radius: 25) [24:00:35 -21335.358777] SPR radius for FAST iterations: 25 (autodetect) [24:00:35 -21335.358777] Model parameter optimization (eps = 3.000000) [24:00:52 -21316.764029] FAST spr round 1 (radius: 25) [24:02:13 -17604.964878] FAST spr round 2 (radius: 25) [24:03:29 -17255.173134] FAST spr round 3 (radius: 25) [24:04:40 -17189.035825] FAST spr round 4 (radius: 25) [24:05:49 -17178.174760] FAST spr round 5 (radius: 25) [24:06:56 -17176.734691] FAST spr round 6 (radius: 25) [24:08:01 -17176.732394] Model parameter optimization (eps = 1.000000) [24:08:12 -17171.365000] SLOW spr round 1 (radius: 5) [24:09:24 -17166.893533] SLOW spr round 2 (radius: 5) [24:10:35 -17163.415818] SLOW spr round 3 (radius: 5) [24:11:45 -17163.414376] SLOW spr round 4 (radius: 10) [24:12:57 -17163.039106] SLOW spr round 5 (radius: 5) [24:14:18 -17162.672474] SLOW spr round 6 (radius: 5) [24:15:32 -17162.670523] SLOW spr round 7 (radius: 10) [24:16:44 -17162.669154] SLOW spr round 8 (radius: 15) [24:18:13 -17147.290001] SLOW spr round 9 (radius: 5) [24:19:35 -17147.283687] SLOW spr round 10 (radius: 10) [24:20:54 -17140.791420] SLOW spr round 11 (radius: 5) [24:22:13 -17140.455887] SLOW spr round 12 (radius: 5) [24:23:27 -17140.454277] SLOW spr round 13 (radius: 10) [24:24:39 -17140.454204] SLOW spr round 14 (radius: 15) [24:26:07 -17137.598122] SLOW spr round 15 (radius: 5) [24:27:29 -17137.573554] SLOW spr round 16 (radius: 10) [24:28:46 -17136.975552] SLOW spr round 17 (radius: 5) [24:30:04 -17136.975503] SLOW spr round 18 (radius: 10) [24:31:16 -17136.975489] SLOW spr round 19 (radius: 15) [24:32:39 -17136.975483] SLOW spr round 20 (radius: 20) [24:34:20 -17128.022721] SLOW spr round 21 (radius: 5) [24:35:43 -17125.331525] SLOW spr round 22 (radius: 5) [24:36:58 -17125.330246] SLOW spr round 23 (radius: 10) [24:38:11 -17125.329752] SLOW spr round 24 (radius: 15) [24:39:36 -17125.329561] SLOW spr round 25 (radius: 20) [24:41:15 -17125.329487] SLOW spr round 26 (radius: 25) [24:43:06 -16989.462985] SLOW spr round 27 (radius: 5) [24:44:30 -16911.030006] SLOW spr round 28 (radius: 5) [24:45:48 -16905.535236] SLOW spr round 29 (radius: 5) [24:47:02 -16899.736188] SLOW spr round 30 (radius: 5) [24:48:13 -16877.974383] SLOW spr round 31 (radius: 5) [24:49:21 -16877.973987] SLOW spr round 32 (radius: 10) [24:50:33 -16876.548696] SLOW spr round 33 (radius: 5) [24:51:54 -16874.409712] SLOW spr round 34 (radius: 5) [24:53:09 -16873.116934] SLOW spr round 35 (radius: 5) [24:54:22 -16871.737765] SLOW spr round 36 (radius: 5) [24:55:33 -16871.737225] SLOW spr round 37 (radius: 10) [24:56:46 -16871.737167] SLOW spr round 38 (radius: 15) [24:58:17 -16740.668694] SLOW spr round 39 (radius: 5) [24:59:39 -16683.219425] SLOW spr round 40 (radius: 5) [25:00:57 -16681.116526] SLOW spr round 41 (radius: 5) [25:02:12 -16678.546228] SLOW spr round 42 (radius: 5) [25:03:19 -16678.545600] SLOW spr round 43 (radius: 10) [25:04:15 -16676.408590] SLOW spr round 44 (radius: 5) [25:05:15 -16676.406200] SLOW spr round 45 (radius: 10) [25:06:24 -16676.405785] SLOW spr round 46 (radius: 15) [25:07:47 -16676.405688] SLOW spr round 47 (radius: 20) [25:09:22 -16675.190517] SLOW spr round 48 (radius: 5) [25:10:36 -16673.258009] SLOW spr round 49 (radius: 5) [25:11:55 -16673.256943] SLOW spr round 50 (radius: 10) [25:13:04 -16673.256611] SLOW spr round 51 (radius: 15) [25:14:26 -16671.863408] SLOW spr round 52 (radius: 5) [25:15:42 -16671.829486] SLOW spr round 53 (radius: 10) [25:16:55 -16671.191481] SLOW spr round 54 (radius: 5) [25:18:11 -16671.191166] SLOW spr round 55 (radius: 10) [25:19:24 -16671.191155] SLOW spr round 56 (radius: 15) [25:20:43 -16671.191154] SLOW spr round 57 (radius: 20) [25:22:12 -16671.191153] SLOW spr round 58 (radius: 25) [25:23:46 -16669.676716] SLOW spr round 59 (radius: 5) [25:25:09 -16669.627137] SLOW spr round 60 (radius: 10) [25:26:26 -16669.626914] SLOW spr round 61 (radius: 15) [25:27:40 -16669.626830] SLOW spr round 62 (radius: 20) [25:29:17 -16669.626797] SLOW spr round 63 (radius: 25) [25:30:56 -16669.626783] Model parameter optimization (eps = 0.100000) [25:31:02] ML tree search #19, logLikelihood: -16669.039626 [25:31:02 -83998.807083] Initial branch length optimization [25:31:03 -66967.813874] Model parameter optimization (eps = 10.000000) [25:31:20 -66790.840076] AUTODETECT spr round 1 (radius: 5) [25:32:24 -48316.786000] AUTODETECT spr round 2 (radius: 10) [25:33:36 -34054.129182] AUTODETECT spr round 3 (radius: 15) [25:34:57 -28241.314827] AUTODETECT spr round 4 (radius: 20) [25:36:28 -25681.448892] AUTODETECT spr round 5 (radius: 25) [25:37:58 -24273.734304] SPR radius for FAST iterations: 25 (autodetect) [25:37:58 -24273.734304] Model parameter optimization (eps = 3.000000) [25:38:13 -24201.097407] FAST spr round 1 (radius: 25) [25:39:26 -19720.944345] FAST spr round 2 (radius: 25) [25:40:21 -19093.686988] FAST spr round 3 (radius: 25) [25:41:17 -19021.591566] FAST spr round 4 (radius: 25) [25:42:23 -19010.958562] FAST spr round 5 (radius: 25) [25:43:26 -19010.548725] FAST spr round 6 (radius: 25) [25:44:29 -19010.545951] Model parameter optimization (eps = 1.000000) [25:44:41 -19004.160552] SLOW spr round 1 (radius: 5) [25:45:52 -18998.084076] SLOW spr round 2 (radius: 5) [25:47:04 -18997.201592] SLOW spr round 3 (radius: 5) [25:48:16 -18997.200479] SLOW spr round 4 (radius: 10) [25:49:29 -18995.524791] SLOW spr round 5 (radius: 5) [25:50:51 -18995.013993] SLOW spr round 6 (radius: 5) [25:52:05 -18995.013707] SLOW spr round 7 (radius: 10) [25:53:18 -18988.328979] SLOW spr round 8 (radius: 5) [25:54:38 -18987.176263] SLOW spr round 9 (radius: 5) [25:55:51 -18987.176169] SLOW spr round 10 (radius: 10) [25:57:04 -18987.050221] SLOW spr round 11 (radius: 5) [25:58:24 -18987.050054] SLOW spr round 12 (radius: 10) [25:59:39 -18987.050030] SLOW spr round 13 (radius: 15) [26:01:04 -18987.050020] SLOW spr round 14 (radius: 20) [26:02:50 -18431.357729] SLOW spr round 15 (radius: 5) [26:04:16 -17869.874297] SLOW spr round 16 (radius: 5) [26:05:32 -17688.775108] SLOW spr round 17 (radius: 5) [26:06:46 -17677.521913] SLOW spr round 18 (radius: 5) [26:07:57 -17675.749784] SLOW spr round 19 (radius: 5) [26:09:10 -17674.749450] SLOW spr round 20 (radius: 5) [26:10:20 -17674.749234] SLOW spr round 21 (radius: 10) [26:11:37 -17527.353643] SLOW spr round 22 (radius: 5) [26:13:01 -17436.019869] SLOW spr round 23 (radius: 5) [26:14:16 -17430.062526] SLOW spr round 24 (radius: 5) [26:15:28 -17430.062315] SLOW spr round 25 (radius: 10) [26:16:40 -17421.096433] SLOW spr round 26 (radius: 5) [26:18:01 -17418.072582] SLOW spr round 27 (radius: 5) [26:19:17 -17416.528075] SLOW spr round 28 (radius: 5) [26:20:29 -17416.527536] SLOW spr round 29 (radius: 10) [26:21:43 -17414.039857] SLOW spr round 30 (radius: 5) [26:23:02 -17413.897885] SLOW spr round 31 (radius: 5) [26:24:15 -17413.897541] SLOW spr round 32 (radius: 10) [26:25:30 -17404.616599] SLOW spr round 33 (radius: 5) [26:26:49 -17378.778376] SLOW spr round 34 (radius: 5) [26:28:03 -17377.377667] SLOW spr round 35 (radius: 5) [26:29:15 -17377.377292] SLOW spr round 36 (radius: 10) [26:30:26 -17377.377273] SLOW spr round 37 (radius: 15) [26:31:59 -17305.503773] SLOW spr round 38 (radius: 5) [26:33:22 -17290.295300] SLOW spr round 39 (radius: 5) [26:34:40 -17280.417766] SLOW spr round 40 (radius: 5) [26:35:53 -17276.349804] SLOW spr round 41 (radius: 5) [26:37:03 -17276.348426] SLOW spr round 42 (radius: 10) [26:38:14 -17276.348247] SLOW spr round 43 (radius: 15) [26:39:47 -17071.282718] SLOW spr round 44 (radius: 5) [26:41:12 -17021.338891] SLOW spr round 45 (radius: 5) [26:42:30 -17013.460852] SLOW spr round 46 (radius: 5) [26:43:42 -17013.459791] SLOW spr round 47 (radius: 10) [26:44:54 -17001.830293] SLOW spr round 48 (radius: 5) [26:46:12 -17001.830267] SLOW spr round 49 (radius: 10) [26:47:29 -17000.249775] SLOW spr round 50 (radius: 5) [26:48:46 -17000.039148] SLOW spr round 51 (radius: 5) [26:49:59 -17000.039067] SLOW spr round 52 (radius: 10) [26:51:12 -17000.039056] SLOW spr round 53 (radius: 15) [26:52:41 -17000.039054] SLOW spr round 54 (radius: 20) [26:54:22 -16998.771730] SLOW spr round 55 (radius: 5) [26:55:44 -16998.771486] SLOW spr round 56 (radius: 10) [26:57:01 -16998.771445] SLOW spr round 57 (radius: 15) [26:58:28 -16998.771436] SLOW spr round 58 (radius: 20) [27:00:07 -16998.771433] SLOW spr round 59 (radius: 25) [27:02:02 -16997.377121] SLOW spr round 60 (radius: 5) [27:03:26 -16997.376912] SLOW spr round 61 (radius: 10) [27:04:48 -16728.664901] SLOW spr round 62 (radius: 5) [27:06:07 -16657.453583] SLOW spr round 63 (radius: 5) [27:07:21 -16653.811613] SLOW spr round 64 (radius: 5) [27:08:34 -16652.728955] SLOW spr round 65 (radius: 5) [27:09:43 -16652.728628] SLOW spr round 66 (radius: 10) [27:10:53 -16652.728597] SLOW spr round 67 (radius: 15) [27:12:22 -16652.728580] SLOW spr round 68 (radius: 20) [27:14:05 -16651.607207] SLOW spr round 69 (radius: 5) [27:15:28 -16651.606151] SLOW spr round 70 (radius: 10) [27:16:46 -16651.605447] SLOW spr round 71 (radius: 15) [27:18:12 -16651.605412] SLOW spr round 72 (radius: 20) [27:19:53 -16651.605405] SLOW spr round 73 (radius: 25) [27:21:50 -16650.040086] SLOW spr round 74 (radius: 5) [27:23:13 -16650.039889] SLOW spr round 75 (radius: 10) [27:24:32 -16650.039884] SLOW spr round 76 (radius: 15) [27:25:58 -16650.039884] SLOW spr round 77 (radius: 20) [27:27:39 -16650.039883] SLOW spr round 78 (radius: 25) [27:29:34 -16650.039883] Model parameter optimization (eps = 0.100000) [27:29:45] ML tree search #20, logLikelihood: -16648.736344 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.181990,0.265582) (0.136102,0.863920) (0.300286,1.029235) (0.381622,1.375761) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -16032.958394 AIC score: 36015.916788 / AICc score: 7841215.916788 / BIC score: 39539.691315 Free parameters (model + branch lengths): 1975 WARNING: Number of free parameters (K=1975) is larger than alignment size (n=44). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 1 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q7Z7M0/3_mltree/Q7Z7M0.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q7Z7M0/3_mltree/Q7Z7M0.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q7Z7M0/3_mltree/Q7Z7M0.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q7Z7M0/3_mltree/Q7Z7M0.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q7Z7M0/3_mltree/Q7Z7M0.raxml.log Analysis started: 07-Jul-2021 10:25:20 / finished: 08-Jul-2021 13:55:05 Elapsed time: 98985.619 seconds Consumed energy: 8639.908 Wh (= 43 km in an electric car, or 216 km with an e-scooter!)