RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 18-Jul-2021 07:35:06 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q7M4L6/2_msa/Q7M4L6_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q7M4L6/3_mltree/Q7M4L6 --seed 2 --threads 3 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q7M4L6/2_msa/Q7M4L6_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 136 sites WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_G1MUH1_G1MUH1_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_H1A456_H1A456_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_U3K0H4_U3K0H4_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_U3J0U7_U3J0U7_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_A0A091IJE8_A0A091IJE8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_A0A093PWB2_A0A093PWB2_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_A0A091UYW5_A0A091UYW5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_A0A087QVI0_A0A087QVI0_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_A0A093HBT4_A0A093HBT4_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_A0A091FZH2_A0A091FZH2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_A0A2I0MBR5_A0A2I0MBR5_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_A0A093GDZ7_A0A093GDZ7_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_A0A091I2G2_A0A091I2G2_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_A0A1V4JYW4_A0A1V4JYW4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PIY0_A0A1D5PIY0_CHICK_9031 and tr_A0A218V4Y8_A0A218V4Y8_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_H0Z2V6_H0Z2V6_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_U3IYV8_U3IYV8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A091FAS5_A0A091FAS5_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A091JHP5_A0A091JHP5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A093PK85_A0A093PK85_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A091URD2_A0A091URD2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A087RGY7_A0A087RGY7_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A093HB20_A0A093HB20_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A091GMR3_A0A091GMR3_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A0A0AL44_A0A0A0AL44_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A093GBE1_A0A093GBE1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A091IH79_A0A091IH79_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A1V4J6M5_A0A1V4J6M5_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_A0A218V5K2_A0A218V5K2_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1P4Q4_F1P4Q4_CHICK_9031 and tr_G1NPP1_G1NPP1_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1P4Q4_F1P4Q4_CHICK_9031 and tr_U3JLW0_U3JLW0_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1P4Q4_F1P4Q4_CHICK_9031 and tr_A0A091EW17_A0A091EW17_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1P4Q4_F1P4Q4_CHICK_9031 and tr_A0A093Q5M5_A0A093Q5M5_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1P4Q4_F1P4Q4_CHICK_9031 and tr_A0A091WWA0_A0A091WWA0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1P4Q4_F1P4Q4_CHICK_9031 and tr_A0A087QW04_A0A087QW04_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1P4Q4_F1P4Q4_CHICK_9031 and tr_A0A091WJM1_A0A091WJM1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1P4Q4_F1P4Q4_CHICK_9031 and tr_A0A091FXQ9_A0A091FXQ9_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1P4Q4_F1P4Q4_CHICK_9031 and tr_A0A0A0AC73_A0A0A0AC73_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1P4Q4_F1P4Q4_CHICK_9031 and tr_A0A093G3C7_A0A093G3C7_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1P4Q4_F1P4Q4_CHICK_9031 and tr_A0A226NGC7_A0A226NGC7_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1P4Q4_F1P4Q4_CHICK_9031 and tr_A0A226PLI8_A0A226PLI8_COLVI_9014 are exactly identical! WARNING: Sequences tr_R4GGM0_R4GGM0_CHICK_9031 and tr_A0A226N734_A0A226N734_CALSU_9009 are exactly identical! WARNING: Sequences sp_O55033_NCK2_MOUSE_10090 and tr_G3H5P3_G3H5P3_CRIGR_10029 are exactly identical! WARNING: Sequences sp_O55033_NCK2_MOUSE_10090 and tr_D4A3M8_D4A3M8_RAT_10116 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_G1PC86_G1PC86_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_G3R4W2_G3R4W2_GORGO_9595 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_F1PEX6_F1PEX6_CANLF_9615 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A2I3RAJ1_A0A2I3RAJ1_PANTR_9598 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A2I3S7G9_A0A2I3S7G9_PANTR_9598 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_F6QCG8_F6QCG8_ORNAN_9258 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_W5PBZ8_W5PBZ8_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_E9PT20_E9PT20_RAT_10116 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_I3NH11_I3NH11_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_H0WWK4_H0WWK4_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_H0V6K4_H0V6K4_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and sp_P00519_ABL1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_H9YUX8_H9YUX8_MACMU_9544 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_G5AT60_G5AT60_HETGA_10181 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_G3SZ92_G3SZ92_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_U3CVZ7_U3CVZ7_CALJA_9483 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_D2H177_D2H177_AILME_9646 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_G7PRB8_G7PRB8_MACFA_9541 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_F1MXG8_F1MXG8_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_L5K6Z7_L5K6Z7_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_M3W3H7_M3W3H7_FELCA_9685 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A0D9RQJ3_A0A0D9RQJ3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A1S3A6Y3_A0A1S3A6Y3_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A1S3FJV8_A0A1S3FJV8_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A1U7TEK2_A0A1U7TEK2_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A1U7R1K5_A0A1U7R1K5_MESAU_10036 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A2K5LX70_A0A2K5LX70_CERAT_9531 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A2K6B7I9_A0A2K6B7I9_MACNE_9545 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A2K5XNT4_A0A2K5XNT4_MANLE_9568 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A2R9BA11_A0A2R9BA11_PANPA_9597 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A2U4A468_A0A2U4A468_TURTR_9739 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A2U3VD43_A0A2U3VD43_ODORO_9708 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A2Y9DJL9_A0A2Y9DJL9_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A2Y9NX24_A0A2Y9NX24_DELLE_9749 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A2Y9F6C6_A0A2Y9F6C6_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P00520_ABL1_MOUSE_10090 and tr_A0A384CRH9_A0A384CRH9_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q4JIM5_ABL2_MOUSE_10090 and tr_G3HW12_G3HW12_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q4JIM5_ABL2_MOUSE_10090 and tr_F1M0N1_F1M0N1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q4JIM5_ABL2_MOUSE_10090 and tr_A0A1U8C216_A0A1U8C216_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q99M51_NCK1_MOUSE_10090 and tr_G1STM8_G1STM8_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q99M51_NCK1_MOUSE_10090 and tr_I3LZC8_I3LZC8_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q99M51_NCK1_MOUSE_10090 and tr_U3CBX5_U3CBX5_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q99M51_NCK1_MOUSE_10090 and tr_A0A2Y9DUZ4_A0A2Y9DUZ4_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YD37_M3YD37_MUSPF_9669 and tr_G1NVU5_G1NVU5_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YD37_M3YD37_MUSPF_9669 and tr_E2RHV6_E2RHV6_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YD37_M3YD37_MUSPF_9669 and tr_W5PD54_W5PD54_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YD37_M3YD37_MUSPF_9669 and tr_H0WPZ9_H0WPZ9_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YD37_M3YD37_MUSPF_9669 and tr_G3TBH2_G3TBH2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YD37_M3YD37_MUSPF_9669 and tr_Q1LZB2_Q1LZB2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YD37_M3YD37_MUSPF_9669 and tr_L5KZ80_L5KZ80_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YD37_M3YD37_MUSPF_9669 and tr_A0A2I2UF94_A0A2I2UF94_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YD37_M3YD37_MUSPF_9669 and tr_A0A1U7STK4_A0A1U7STK4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YD37_M3YD37_MUSPF_9669 and tr_A0A2U3ZVG4_A0A2U3ZVG4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YD37_M3YD37_MUSPF_9669 and tr_A0A2U3X949_A0A2U3X949_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YD37_M3YD37_MUSPF_9669 and tr_A0A2Y9KAF6_A0A2Y9KAF6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_A0A2I3GI86_A0A2I3GI86_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_G3RFN5_G3RFN5_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_A0A2J8S9G9_A0A2J8S9G9_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_G1U3C3_G1U3C3_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_H2QIH7_H2QIH7_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_F7BRP0_F7BRP0_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_H0Y0Q9_H0Y0Q9_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and sp_O43639_NCK2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_F7D094_F7D094_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_G3T5B4_G3T5B4_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_D2GWY7_D2GWY7_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_G7PMW0_G7PMW0_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_M3VXW5_M3VXW5_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_A0A096NGH0_A0A096NGH0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_A0A0D9RWX0_A0A0D9RWX0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_A0A2K5N045_A0A2K5N045_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_A0A2K6D5L9_A0A2K6D5L9_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_A0A2K6AFG1_A0A2K6AFG1_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_A0A2R9BIN4_A0A2R9BIN4_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_A0A2U3WTE2_A0A2U3WTE2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_A0A2U3YX25_A0A2U3YX25_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_A0A2Y9KS48_A0A2Y9KS48_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YHE1_M3YHE1_MUSPF_9669 and tr_A0A384CR76_A0A384CR76_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YI49_M3YI49_MUSPF_9669 and tr_A0A2Y9IKG5_A0A2Y9IKG5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YMM7_M3YMM7_MUSPF_9669 and tr_A0A2Y9J9D9_A0A2Y9J9D9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P00522_ABL_DROME_7227 and tr_B4HJR1_B4HJR1_DROSE_7238 are exactly identical! WARNING: Sequences sp_P00522_ABL_DROME_7227 and tr_A0A0Q9XGJ2_A0A0Q9XGJ2_DROMO_7230 are exactly identical! WARNING: Sequences sp_P00522_ABL_DROME_7227 and tr_A0A1W4UV97_A0A1W4UV97_DROFC_30025 are exactly identical! WARNING: Sequences sp_Q08012_DRK_DROME_7227 and tr_B4JVQ1_B4JVQ1_DROGR_7222 are exactly identical! WARNING: Sequences sp_Q08012_DRK_DROME_7227 and tr_B4HQJ5_B4HQJ5_DROSE_7238 are exactly identical! WARNING: Sequences sp_Q08012_DRK_DROME_7227 and tr_Q28ZT1_Q28ZT1_DROPS_46245 are exactly identical! WARNING: Sequences sp_Q08012_DRK_DROME_7227 and tr_B4MIT0_B4MIT0_DROWI_7260 are exactly identical! WARNING: Sequences sp_Q08012_DRK_DROME_7227 and tr_B3MGZ3_B3MGZ3_DROAN_7217 are exactly identical! WARNING: Sequences sp_Q08012_DRK_DROME_7227 and tr_B4GGT9_B4GGT9_DROPE_7234 are exactly identical! WARNING: Sequences sp_Q08012_DRK_DROME_7227 and tr_B4MCL9_B4MCL9_DROVI_7244 are exactly identical! WARNING: Sequences sp_Q08012_DRK_DROME_7227 and tr_A0A1W4VHZ6_A0A1W4VHZ6_DROFC_30025 are exactly identical! WARNING: Sequences tr_H2MYS0_H2MYS0_ORYLA_8090 and tr_A0A2I4ALD9_A0A2I4ALD9_9TELE_52670 are exactly identical! WARNING: Sequences tr_G1QVI6_G1QVI6_NOMLE_61853 and tr_G3SC98_G3SC98_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QVI6_G1QVI6_NOMLE_61853 and tr_A0A2J8TTT9_A0A2J8TTT9_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QVI6_G1QVI6_NOMLE_61853 and tr_G2HHN0_G2HHN0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QVI6_G1QVI6_NOMLE_61853 and sp_P16333_NCK1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QVI6_G1QVI6_NOMLE_61853 and tr_G7NXX3_G7NXX3_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QVI6_G1QVI6_NOMLE_61853 and tr_A0A0D9REU4_A0A0D9REU4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QVI6_G1QVI6_NOMLE_61853 and tr_A0A2K5LJI1_A0A2K5LJI1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QVI6_G1QVI6_NOMLE_61853 and tr_A0A2K6CMA1_A0A2K6CMA1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QVI6_G1QVI6_NOMLE_61853 and tr_A0A2K5Y191_A0A2K5Y191_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QVI6_G1QVI6_NOMLE_61853 and tr_A0A2R9A1S6_A0A2R9A1S6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RKR3_G1RKR3_NOMLE_61853 and tr_G3SID3_G3SID3_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RKR3_G1RKR3_NOMLE_61853 and tr_H2N5K9_H2N5K9_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RKR3_G1RKR3_NOMLE_61853 and tr_H2Q054_H2Q054_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RKR3_G1RKR3_NOMLE_61853 and sp_Q5VZ18_SHE_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RKR3_G1RKR3_NOMLE_61853 and tr_F6U5Z5_F6U5Z5_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RKR3_G1RKR3_NOMLE_61853 and tr_G7NUI7_G7NUI7_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RKR3_G1RKR3_NOMLE_61853 and tr_A0A096MYU2_A0A096MYU2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RKR3_G1RKR3_NOMLE_61853 and tr_A0A0D9S5E5_A0A0D9S5E5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RKR3_G1RKR3_NOMLE_61853 and tr_A0A2K5LXE6_A0A2K5LXE6_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RKR3_G1RKR3_NOMLE_61853 and tr_A0A2K6DYP7_A0A2K6DYP7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RKR3_G1RKR3_NOMLE_61853 and tr_A0A2R9AI69_A0A2R9AI69_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1P8N6_G1P8N6_MYOLU_59463 and tr_F6WQT9_F6WQT9_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1P8N6_G1P8N6_MYOLU_59463 and tr_F1SN43_F1SN43_PIG_9823 are exactly identical! WARNING: Sequences tr_G1P8N6_G1P8N6_MYOLU_59463 and tr_F6RFU1_F6RFU1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1P8N6_G1P8N6_MYOLU_59463 and tr_L5K3X9_L5K3X9_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1P8N6_G1P8N6_MYOLU_59463 and tr_A0A2Y9FY87_A0A2Y9FY87_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1P8N6_G1P8N6_MYOLU_59463 and tr_A0A2Y9PHZ9_A0A2Y9PHZ9_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1P8N6_G1P8N6_MYOLU_59463 and tr_A0A2Y9SBT6_A0A2Y9SBT6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1P8N6_G1P8N6_MYOLU_59463 and tr_A0A383Z3Y3_A0A383Z3Y3_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_H2N4J6_H2N4J6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_F1PPK2_F1PPK2_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_F7FED8_F7FED8_MONDO_13616 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_F7B6Q9_F7B6Q9_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_W5Q539_W5Q539_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_I3N8T1_I3N8T1_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_G3SW23_G3SW23_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_I3LP68_I3LP68_PIG_9823 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_D2H3L6_D2H3L6_AILME_9646 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_F1MWH8_F1MWH8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A2U4CQS2_A0A2U4CQS2_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A2U3VSL4_A0A2U3VSL4_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A2U3XRU8_A0A2U3XRU8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A2Y9DE47_A0A2Y9DE47_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A2Y9JSJ0_A0A2Y9JSJ0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A2Y9LZ58_A0A2Y9LZ58_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A2Y9TJX0_A0A2Y9TJX0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_A0A384AMB6_A0A384AMB6_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3HMD9_G3HMD9_CRIGR_10029 and tr_A0A1U7QB85_A0A1U7QB85_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3QJK0_G3QJK0_GORGO_9595 and tr_A0A2I3TWE6_A0A2I3TWE6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QJK0_G3QJK0_GORGO_9595 and tr_H0VN71_H0VN71_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G3QJK0_G3QJK0_GORGO_9595 and sp_P42684_ABL2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QJK0_G3QJK0_GORGO_9595 and tr_F7AU70_F7AU70_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QJK0_G3QJK0_GORGO_9595 and tr_A0A2R8MYN3_A0A2R8MYN3_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QJK0_G3QJK0_GORGO_9595 and tr_A0A2I3MIM0_A0A2I3MIM0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QJK0_G3QJK0_GORGO_9595 and tr_A0A0D9RI41_A0A0D9RI41_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QJK0_G3QJK0_GORGO_9595 and tr_A0A1U7TZR0_A0A1U7TZR0_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3QJK0_G3QJK0_GORGO_9595 and tr_A0A2K6CR83_A0A2K6CR83_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QJK0_G3QJK0_GORGO_9595 and tr_A0A2R9CMZ1_A0A2R9CMZ1_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R9H6_G3R9H6_GORGO_9595 and tr_H2NN46_H2NN46_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3R9H6_G3R9H6_GORGO_9595 and tr_H2Q9C9_H2Q9C9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R9H6_G3R9H6_GORGO_9595 and tr_H0X7Q2_H0X7Q2_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G3R9H6_G3R9H6_GORGO_9595 and tr_F7EK47_F7EK47_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3R9H6_G3R9H6_GORGO_9595 and tr_A0A096NLZ4_A0A096NLZ4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3R9H6_G3R9H6_GORGO_9595 and tr_A0A2K5MFP4_A0A2K5MFP4_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R9H6_G3R9H6_GORGO_9595 and tr_A0A2K6DJS8_A0A2K6DJS8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3R9H6_G3R9H6_GORGO_9595 and tr_A0A2K5Y6X1_A0A2K5Y6X1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3R9H6_G3R9H6_GORGO_9595 and tr_A0A2R8ZLI0_A0A2R8ZLI0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RE19_G3RE19_GORGO_9595 and tr_K7CHY5_K7CHY5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RE19_G3RE19_GORGO_9595 and sp_Q15464_SHB_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RE19_G3RE19_GORGO_9595 and tr_A0A2R9AZ68_A0A2R9AZ68_PANPA_9597 are exactly identical! WARNING: Sequences tr_C3ZKS6_C3ZKS6_BRAFL_7739 and tr_C3ZPI6_C3ZPI6_BRAFL_7739 are exactly identical! WARNING: Sequences tr_H2PRP3_H2PRP3_PONAB_9601 and tr_F6TZN9_F6TZN9_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2PRP3_H2PRP3_PONAB_9601 and tr_A0A096P144_A0A096P144_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2PRP3_H2PRP3_PONAB_9601 and tr_A0A0D9REM4_A0A0D9REM4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2PRP3_H2PRP3_PONAB_9601 and tr_A0A2K5MT07_A0A2K5MT07_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PRP3_H2PRP3_PONAB_9601 and tr_A0A2K5YV88_A0A2K5YV88_MANLE_9568 are exactly identical! WARNING: Sequences tr_F1Q3E6_F1Q3E6_CANLF_9615 and tr_A0A2I2V3V0_A0A2I2V3V0_FELCA_9685 are exactly identical! WARNING: Sequences tr_F6Z948_F6Z948_MONDO_13616 and tr_G3WZ68_G3WZ68_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6WFB5_F6WFB5_HORSE_9796 and tr_G1LIK2_G1LIK2_AILME_9646 are exactly identical! WARNING: Sequences tr_F6WFB5_F6WFB5_HORSE_9796 and tr_A0A384DHB8_A0A384DHB8_URSMA_29073 are exactly identical! WARNING: Sequences tr_F7DR40_F7DR40_HORSE_9796 and tr_A0A384B4S0_A0A384B4S0_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A3B5PV91_A0A3B5PV91_XIPMA_8083 and tr_A0A087YPJ4_A0A087YPJ4_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5PV91_A0A3B5PV91_XIPMA_8083 and tr_A0A2I4CVV6_A0A2I4CVV6_9TELE_52670 are exactly identical! WARNING: Sequences tr_M4AYB8_M4AYB8_XIPMA_8083 and tr_A0A087X9W7_A0A087X9W7_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A087ZXM2_A0A087ZXM2_APIME_7460 and tr_A0A158NEL3_A0A158NEL3_ATTCE_12957 are exactly identical! WARNING: Sequences tr_A0A087ZXM2_A0A087ZXM2_APIME_7460 and tr_A0A0N0BKX1_A0A0N0BKX1_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A087ZXM2_A0A087ZXM2_APIME_7460 and tr_A0A195EN05_A0A195EN05_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A087ZXM2_A0A087ZXM2_APIME_7460 and tr_A0A195FLT0_A0A195FLT0_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A087ZXM2_A0A087ZXM2_APIME_7460 and tr_A0A195BZU9_A0A195BZU9_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A087ZXM2_A0A087ZXM2_APIME_7460 and tr_A0A2A3EC90_A0A2A3EC90_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088AKT0_A0A088AKT0_APIME_7460 and tr_A0A0L7RF84_A0A0L7RF84_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A088AT87_A0A088AT87_APIME_7460 and tr_A0A2A3EUP4_A0A2A3EUP4_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_F4WV60_F4WV60_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A151WUC9_A0A151WUC9_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A195DS06_A0A195DS06_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A195BS54_A0A195BS54_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A195EXC2_A0A195EXC2_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A195C704_A0A195C704_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A158NY60_A0A158NY60_ATTCE_12957 and tr_A0A151WPR5_A0A151WPR5_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NY60_A0A158NY60_ATTCE_12957 and tr_A0A195ECP4_A0A195ECP4_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NY60_A0A158NY60_ATTCE_12957 and tr_A0A195AZU9_A0A195AZU9_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NY60_A0A158NY60_ATTCE_12957 and tr_A0A195EUZ2_A0A195EUZ2_9HYME_34720 are exactly identical! WARNING: Sequences tr_H2SQR3_H2SQR3_TAKRU_31033 and tr_A0A2U9C7V6_A0A2U9C7V6_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A286XBB5_A0A286XBB5_CAVPO_10141 and tr_A0A091DR65_A0A091DR65_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A0K0JDP4_A0A0K0JDP4_BRUMA_6279 and tr_A0A158PSP9_A0A158PSP9_BRUPA_6280 are exactly identical! WARNING: Sequences tr_F7F3C2_F7F3C2_MACMU_9544 and tr_G8F2N6_G8F2N6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G7NLW6_G7NLW6_MACMU_9544 and tr_A0A0A0MVI4_A0A0A0MVI4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7NLW6_G7NLW6_MACMU_9544 and tr_A0A0D9RE21_A0A0D9RE21_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G7NLW6_G7NLW6_MACMU_9544 and tr_A0A2K5MLT4_A0A2K5MLT4_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7NLW6_G7NLW6_MACMU_9544 and tr_A0A2K6C207_A0A2K6C207_MACNE_9545 are exactly identical! WARNING: Sequences tr_K7FHZ2_K7FHZ2_PELSI_13735 and tr_A0A151MFN4_A0A151MFN4_ALLMI_8496 are exactly identical! WARNING: Sequences tr_K7FHZ2_K7FHZ2_PELSI_13735 and tr_A0A1U7S4W8_A0A1U7S4W8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G3PX44_G3PX44_GASAC_69293 and tr_A0A3B1JBR6_A0A3B1JBR6_ASTMX_7994 are exactly identical! WARNING: Sequences tr_G3TLK1_G3TLK1_LOXAF_9785 and tr_A0A337S978_A0A337S978_FELCA_9685 are exactly identical! WARNING: Sequences tr_G3TLK1_G3TLK1_LOXAF_9785 and tr_A0A2Y9JBN6_A0A2Y9JBN6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F7BKF3_F7BKF3_XENTR_8364 and tr_A0A1L8GML3_A0A1L8GML3_XENLA_8355 are exactly identical! WARNING: Sequences tr_B6E314_B6E314_PIG_9823 and tr_A6H720_A6H720_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1ST57_F1ST57_PIG_9823 and tr_E1BLY9_E1BLY9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A8X798_A8X798_CAEBR_6238 and tr_A0A2G5VT98_A0A2G5VT98_9PELO_1611254 are exactly identical! WARNING: Sequences tr_Q16GF8_Q16GF8_AEDAE_7159 and tr_A0A084WJ51_A0A084WJ51_ANOSI_74873 are exactly identical! WARNING: Sequences tr_D2H0H9_D2H0H9_AILME_9646 and tr_A0A2U3VCS3_A0A2U3VCS3_ODORO_9708 are exactly identical! WARNING: Sequences tr_D2H0H9_D2H0H9_AILME_9646 and tr_A0A384DHE4_A0A384DHE4_URSMA_29073 are exactly identical! WARNING: Sequences tr_L5KPY7_L5KPY7_PTEAL_9402 and tr_A0A091CKC0_A0A091CKC0_FUKDA_885580 are exactly identical! WARNING: Sequences tr_U3J1D4_U3J1D4_ANAPL_8839 and tr_A0A2I0MSQ7_A0A2I0MSQ7_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3J1D4_U3J1D4_ANAPL_8839 and tr_A0A091I9I6_A0A091I9I6_CALAN_9244 are exactly identical! WARNING: Sequences tr_U3J1D4_U3J1D4_ANAPL_8839 and tr_A0A1V4J464_A0A1V4J464_PATFA_372326 are exactly identical! WARNING: Sequences tr_W5K448_W5K448_ASTMX_7994 and tr_A0A1S3PBM6_A0A1S3PBM6_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A151MIR6_A0A151MIR6_ALLMI_8496 and tr_A0A1U7SM91_A0A1U7SM91_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3LXA6_A0A0Q3LXA6_AMAAE_12930 and tr_A0A091JHH2_A0A091JHH2_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A0Q3LXA6_A0A0Q3LXA6_AMAAE_12930 and tr_A0A091UL66_A0A091UL66_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A0Q3LXA6_A0A0Q3LXA6_AMAAE_12930 and tr_A0A0A0B0N0_A0A0A0B0N0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0M9AB24_A0A0M9AB24_9HYME_166423 and tr_A0A0L7R834_A0A0L7R834_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A194QRR0_A0A194QRR0_PAPMA_76193 and tr_A0A194QB94_A0A194QB94_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V1CHZ0_A0A0V1CHZ0_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V0WVC0_A0A0V0WVC0_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V0VPU7_A0A0V0VPU7_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V1KW03_A0A0V1KW03_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V0ZF00_A0A0V0ZF00_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V1NZC5_A0A0V1NZC5_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0S006_A0A0V0S006_9BILA_6336 and tr_A0A0V0TSD2_A0A0V0TSD2_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0X507_A0A0V0X507_9BILA_92179 and tr_A0A0V1L0K2_A0A0V1L0K2_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0Z8E6_A0A0V0Z8E6_9BILA_990121 and tr_A0A0V1NJ15_A0A0V1NJ15_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0Z8E6_A0A0V0Z8E6_9BILA_990121 and tr_A0A0V0TSP0_A0A0V0TSP0_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1S3L0Z6_A0A1S3L0Z6_SALSA_8030 and tr_A0A1S3LJM4_A0A1S3LJM4_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3PC26_A0A1S3PC26_SALSA_8030 and tr_A0A060XHX5_A0A060XHX5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0QAM3_A0A2D0QAM3_ICTPU_7998 and tr_A0A2D0QAN0_A0A2D0QAN0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QSH3_A0A2D0QSH3_ICTPU_7998 and tr_A0A2D0QUF3_A0A2D0QUF3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U3V169_A0A2U3V169_TURTR_9739 and tr_A0A2Y9NTD8_A0A2Y9NTD8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V169_A0A2U3V169_TURTR_9739 and tr_A0A2Y9TBF2_A0A2Y9TBF2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3V169_A0A2U3V169_TURTR_9739 and tr_A0A383Z5P0_A0A383Z5P0_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3V4M7_A0A2U3V4M7_TURTR_9739 and tr_A0A2Y9M7V3_A0A2Y9M7V3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9QLC1_A0A2Y9QLC1_DELLE_9749 and tr_A0A2Y9EQR3_A0A2Y9EQR3_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 288 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q7M4L6/3_mltree/Q7M4L6.raxml.reduced.phy Alignment comprises 1 partitions and 136 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 136 / 136 Gaps: 7.32 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q7M4L6/3_mltree/Q7M4L6.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 136 / 10880 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -237543.477999] Initial branch length optimization [00:00:04 -191472.252088] Model parameter optimization (eps = 10.000000) [00:01:04 -190479.138385] AUTODETECT spr round 1 (radius: 5) [00:03:25 -105926.454829] AUTODETECT spr round 2 (radius: 10) [00:05:44 -73071.850611] AUTODETECT spr round 3 (radius: 15) [00:08:17 -55114.805831] AUTODETECT spr round 4 (radius: 20) [00:11:03 -46668.453060] AUTODETECT spr round 5 (radius: 25) [00:14:14 -43564.666630] SPR radius for FAST iterations: 25 (autodetect) [00:14:14 -43564.666630] Model parameter optimization (eps = 3.000000) [00:14:37 -43512.542681] FAST spr round 1 (radius: 25) [00:17:17 -36332.348734] FAST spr round 2 (radius: 25) [00:19:23 -35620.551584] FAST spr round 3 (radius: 25) [00:21:20 -35586.120594] FAST spr round 4 (radius: 25) [00:23:01 -35582.296739] FAST spr round 5 (radius: 25) [00:24:41 -35581.566842] FAST spr round 6 (radius: 25) [00:26:18 -35581.565805] Model parameter optimization (eps = 1.000000) [00:26:35 -35578.453890] SLOW spr round 1 (radius: 5) [00:28:33 -35573.817233] SLOW spr round 2 (radius: 5) [00:30:30 -35570.253394] SLOW spr round 3 (radius: 5) [00:32:22 -35570.252619] SLOW spr round 4 (radius: 10) [00:34:21 -35569.201413] SLOW spr round 5 (radius: 5) [00:36:41 -35568.890367] SLOW spr round 6 (radius: 5) [00:38:48 -35568.847919] SLOW spr round 7 (radius: 10) [00:40:52 -35568.847123] SLOW spr round 8 (radius: 15) [00:43:36 -35568.846604] SLOW spr round 9 (radius: 20) [00:47:13 -35568.367849] SLOW spr round 10 (radius: 5) [00:49:40 -35568.367299] SLOW spr round 11 (radius: 10) [00:52:00 -35568.366790] SLOW spr round 12 (radius: 15) [00:54:41 -35568.366283] SLOW spr round 13 (radius: 20) [00:58:18 -35568.365777] SLOW spr round 14 (radius: 25) [01:02:51 -35568.365273] Model parameter optimization (eps = 0.100000) [01:02:59] [worker #0] ML tree search #1, logLikelihood: -35568.304401 [01:02:59 -236595.637437] Initial branch length optimization [01:03:03 -190648.637641] Model parameter optimization (eps = 10.000000) [01:03:40 -189574.214140] AUTODETECT spr round 1 (radius: 5) [01:06:02 -106543.226293] AUTODETECT spr round 2 (radius: 10) [01:08:25 -69548.262103] AUTODETECT spr round 3 (radius: 15) [01:10:56 -58267.878006] AUTODETECT spr round 4 (radius: 20) [01:11:27] [worker #2] ML tree search #3, logLikelihood: -35565.404661 [01:13:52 -48377.878957] AUTODETECT spr round 5 (radius: 25) [01:16:50 -46377.784928] SPR radius for FAST iterations: 25 (autodetect) [01:16:50 -46377.784928] Model parameter optimization (eps = 3.000000) [01:17:24 -46342.750568] FAST spr round 1 (radius: 25) [01:19:49 -37881.377038] FAST spr round 2 (radius: 25) [01:20:31] [worker #1] ML tree search #2, logLikelihood: -35558.487849 [01:21:51 -36727.903475] FAST spr round 3 (radius: 25) [01:23:40 -35941.128646] FAST spr round 4 (radius: 25) [01:25:29 -35640.492773] FAST spr round 5 (radius: 25) [01:27:11 -35631.843178] FAST spr round 6 (radius: 25) [01:28:49 -35631.059562] FAST spr round 7 (radius: 25) [01:30:27 -35631.059457] Model parameter optimization (eps = 1.000000) [01:30:42 -35609.236560] SLOW spr round 1 (radius: 5) [01:32:40 -35603.067521] SLOW spr round 2 (radius: 5) [01:34:34 -35603.064843] SLOW spr round 3 (radius: 10) [01:36:31 -35602.680964] SLOW spr round 4 (radius: 5) [01:38:51 -35602.680826] SLOW spr round 5 (radius: 10) [01:41:04 -35598.616502] SLOW spr round 6 (radius: 5) [01:43:22 -35598.598938] SLOW spr round 7 (radius: 10) [01:45:30 -35598.598678] SLOW spr round 8 (radius: 15) [01:48:12 -35597.778278] SLOW spr round 9 (radius: 5) [01:50:37 -35597.777593] SLOW spr round 10 (radius: 10) [01:52:54 -35597.777542] SLOW spr round 11 (radius: 15) [01:55:31 -35597.777529] SLOW spr round 12 (radius: 20) [01:59:13 -35593.114573] SLOW spr round 13 (radius: 5) [02:01:46 -35588.060968] SLOW spr round 14 (radius: 5) [02:04:02 -35581.475412] SLOW spr round 15 (radius: 5) [02:06:05 -35581.472328] SLOW spr round 16 (radius: 10) [02:07:08] [worker #2] ML tree search #6, logLikelihood: -35569.900510 [02:08:04 -35581.471633] SLOW spr round 17 (radius: 15) [02:10:48 -35581.471417] SLOW spr round 18 (radius: 20) [02:14:24 -35581.471341] SLOW spr round 19 (radius: 25) [02:19:06 -35581.418207] Model parameter optimization (eps = 0.100000) [02:19:18] [worker #0] ML tree search #4, logLikelihood: -35580.695815 [02:19:18 -236269.607564] Initial branch length optimization [02:19:21 -190383.011746] Model parameter optimization (eps = 10.000000) [02:20:07 -189413.068812] AUTODETECT spr round 1 (radius: 5) [02:22:30 -107407.199313] AUTODETECT spr round 2 (radius: 10) [02:24:54 -70466.419611] AUTODETECT spr round 3 (radius: 15) [02:27:28 -56420.643626] AUTODETECT spr round 4 (radius: 20) [02:30:16 -50976.612213] AUTODETECT spr round 5 (radius: 25) [02:33:27 -43293.588038] SPR radius for FAST iterations: 25 (autodetect) [02:33:27 -43293.588038] Model parameter optimization (eps = 3.000000) [02:33:54 -43250.897359] FAST spr round 1 (radius: 25) [02:36:23 -36500.572210] FAST spr round 2 (radius: 25) [02:37:08] [worker #1] ML tree search #5, logLikelihood: -35575.241385 [02:38:27 -35697.441779] FAST spr round 3 (radius: 25) [02:40:24 -35618.046171] FAST spr round 4 (radius: 25) [02:42:13 -35604.873664] FAST spr round 5 (radius: 25) [02:43:55 -35604.872525] Model parameter optimization (eps = 1.000000) [02:44:14 -35584.960340] SLOW spr round 1 (radius: 5) [02:46:14 -35577.171346] SLOW spr round 2 (radius: 5) [02:48:15 -35575.720983] SLOW spr round 3 (radius: 5) [02:50:10 -35575.720839] SLOW spr round 4 (radius: 10) [02:52:10 -35573.710744] SLOW spr round 5 (radius: 5) [02:54:32 -35573.710532] SLOW spr round 6 (radius: 10) [02:56:47 -35573.710527] SLOW spr round 7 (radius: 15) [02:59:29 -35573.697502] SLOW spr round 8 (radius: 20) [03:03:15 -35562.052774] SLOW spr round 9 (radius: 5) [03:05:48 -35561.519279] SLOW spr round 10 (radius: 5) [03:08:03 -35561.518993] SLOW spr round 11 (radius: 10) [03:10:12 -35561.518982] SLOW spr round 12 (radius: 15) [03:12:52 -35561.518979] SLOW spr round 13 (radius: 20) [03:13:09] [worker #2] ML tree search #9, logLikelihood: -35570.420551 [03:16:31 -35561.199187] SLOW spr round 14 (radius: 5) [03:19:01 -35561.199184] SLOW spr round 15 (radius: 10) [03:21:22 -35561.199182] SLOW spr round 16 (radius: 15) [03:23:02] [worker #1] ML tree search #8, logLikelihood: -35572.117582 [03:24:00 -35561.199179] SLOW spr round 17 (radius: 20) [03:27:39 -35561.199176] SLOW spr round 18 (radius: 25) [03:32:15 -35559.690833] SLOW spr round 19 (radius: 5) [03:34:49 -35555.197028] SLOW spr round 20 (radius: 5) [03:37:04 -35555.196910] SLOW spr round 21 (radius: 10) [03:39:11 -35555.196905] SLOW spr round 22 (radius: 15) [03:41:48 -35555.196904] SLOW spr round 23 (radius: 20) [03:45:29 -35555.196903] SLOW spr round 24 (radius: 25) [03:50:08 -35555.196786] Model parameter optimization (eps = 0.100000) [03:50:21] [worker #0] ML tree search #7, logLikelihood: -35554.778726 [03:50:21 -236661.942013] Initial branch length optimization [03:50:25 -189227.809197] Model parameter optimization (eps = 10.000000) [03:51:20 -188242.725976] AUTODETECT spr round 1 (radius: 5) [03:53:43 -109131.533119] AUTODETECT spr round 2 (radius: 10) [03:56:06 -71675.385125] AUTODETECT spr round 3 (radius: 15) [03:58:44 -57062.658215] AUTODETECT spr round 4 (radius: 20) [04:01:37 -52705.144433] AUTODETECT spr round 5 (radius: 25) [04:04:51 -44080.002211] SPR radius for FAST iterations: 25 (autodetect) [04:04:51 -44080.002211] Model parameter optimization (eps = 3.000000) [04:05:11 -44038.106268] FAST spr round 1 (radius: 25) [04:07:54 -36235.858167] FAST spr round 2 (radius: 25) [04:10:09 -35699.347173] FAST spr round 3 (radius: 25) [04:12:08 -35632.600239] FAST spr round 4 (radius: 25) [04:13:56 -35619.178701] FAST spr round 5 (radius: 25) [04:15:41 -35611.072821] FAST spr round 6 (radius: 25) [04:17:22 -35610.422018] FAST spr round 7 (radius: 25) [04:19:04 -35609.627341] FAST spr round 8 (radius: 25) [04:20:44 -35609.627238] Model parameter optimization (eps = 1.000000) [04:21:02 -35593.005710] SLOW spr round 1 (radius: 5) [04:23:03 -35585.887704] SLOW spr round 2 (radius: 5) [04:25:05 -35582.537685] SLOW spr round 3 (radius: 5) [04:27:00 -35582.536651] SLOW spr round 4 (radius: 10) [04:29:02 -35581.454185] SLOW spr round 5 (radius: 5) [04:31:24 -35581.133910] SLOW spr round 6 (radius: 5) [04:33:33 -35579.977856] SLOW spr round 7 (radius: 5) [04:34:06] [worker #2] ML tree search #12, logLikelihood: -35561.151641 [04:35:34 -35579.977825] SLOW spr round 8 (radius: 10) [04:37:36 -35575.145173] SLOW spr round 9 (radius: 5) [04:40:00 -35574.861034] SLOW spr round 10 (radius: 5) [04:42:08 -35574.506255] SLOW spr round 11 (radius: 5) [04:44:08 -35574.506097] SLOW spr round 12 (radius: 10) [04:46:08 -35574.506075] SLOW spr round 13 (radius: 15) [04:47:38] [worker #1] ML tree search #11, logLikelihood: -35691.586700 [04:48:52 -35574.506067] SLOW spr round 14 (radius: 20) [04:52:23 -35573.342053] SLOW spr round 15 (radius: 5) [04:54:53 -35573.341867] SLOW spr round 16 (radius: 10) [04:57:21 -35573.341723] SLOW spr round 17 (radius: 15) [05:00:01 -35573.341719] SLOW spr round 18 (radius: 20) [05:03:38 -35572.892481] SLOW spr round 19 (radius: 5) [05:06:08 -35572.892381] SLOW spr round 20 (radius: 10) [05:08:33 -35572.892375] SLOW spr round 21 (radius: 15) [05:11:12 -35572.892372] SLOW spr round 22 (radius: 20) [05:14:48 -35572.892370] SLOW spr round 23 (radius: 25) [05:19:41 -35570.865633] SLOW spr round 24 (radius: 5) [05:22:13 -35570.865050] SLOW spr round 25 (radius: 10) [05:24:39 -35570.865009] SLOW spr round 26 (radius: 15) [05:27:17 -35570.865006] SLOW spr round 27 (radius: 20) [05:27:27] [worker #2] ML tree search #15, logLikelihood: -35637.032136 [05:30:52 -35570.865005] SLOW spr round 28 (radius: 25) [05:35:42 -35570.865005] Model parameter optimization (eps = 0.100000) [05:35:47] [worker #0] ML tree search #10, logLikelihood: -35570.842997 [05:35:47 -237518.230510] Initial branch length optimization [05:35:52 -192423.732596] Model parameter optimization (eps = 10.000000) [05:37:03 -191411.020485] AUTODETECT spr round 1 (radius: 5) [05:39:29 -110998.622222] AUTODETECT spr round 2 (radius: 10) [05:41:53 -71528.076936] AUTODETECT spr round 3 (radius: 15) [05:44:29 -57101.928974] AUTODETECT spr round 4 (radius: 20) [05:47:22 -50507.372900] AUTODETECT spr round 5 (radius: 25) [05:49:55] [worker #1] ML tree search #14, logLikelihood: -35564.561588 [05:50:43 -45429.569622] SPR radius for FAST iterations: 25 (autodetect) [05:50:43 -45429.569622] Model parameter optimization (eps = 3.000000) [05:51:04 -45387.660405] FAST spr round 1 (radius: 25) [05:53:35 -36497.672846] FAST spr round 2 (radius: 25) [05:55:38 -35728.567381] FAST spr round 3 (radius: 25) [05:57:28 -35606.250675] FAST spr round 4 (radius: 25) [05:59:14 -35594.068498] FAST spr round 5 (radius: 25) [06:00:56 -35591.496689] FAST spr round 6 (radius: 25) [06:02:36 -35591.402926] Model parameter optimization (eps = 1.000000) [06:02:59 -35584.483420] SLOW spr round 1 (radius: 5) [06:04:59 -35575.596665] SLOW spr round 2 (radius: 5) [06:06:59 -35570.904234] SLOW spr round 3 (radius: 5) [06:08:54 -35570.903827] SLOW spr round 4 (radius: 10) [06:10:54 -35570.890476] SLOW spr round 5 (radius: 15) [06:13:43 -35568.781730] SLOW spr round 6 (radius: 5) [06:16:12 -35567.370148] SLOW spr round 7 (radius: 5) [06:18:24 -35567.369515] SLOW spr round 8 (radius: 10) [06:20:33 -35567.369464] SLOW spr round 9 (radius: 15) [06:23:19 -35561.956882] SLOW spr round 10 (radius: 5) [06:25:44 -35561.956630] SLOW spr round 11 (radius: 10) [06:28:08 -35559.801431] SLOW spr round 12 (radius: 5) [06:30:26 -35559.579854] SLOW spr round 13 (radius: 5) [06:32:31 -35559.577575] SLOW spr round 14 (radius: 10) [06:34:38 -35559.576666] SLOW spr round 15 (radius: 15) [06:37:23 -35559.576391] SLOW spr round 16 (radius: 20) [06:37:38] [worker #2] ML tree search #18, logLikelihood: -35574.140312 [06:41:00 -35557.919669] SLOW spr round 17 (radius: 5) [06:43:28 -35557.919623] SLOW spr round 18 (radius: 10) [06:45:49 -35557.919611] SLOW spr round 19 (radius: 15) [06:48:29 -35557.919607] SLOW spr round 20 (radius: 20) [06:52:07 -35557.919606] SLOW spr round 21 (radius: 25) [06:56:42 -35557.919605] Model parameter optimization (eps = 0.100000) [06:56:49] [worker #0] ML tree search #13, logLikelihood: -35557.875371 [06:56:49 -235694.276190] Initial branch length optimization [06:56:52 -190375.883738] Model parameter optimization (eps = 10.000000) [06:57:28 -189288.551376] AUTODETECT spr round 1 (radius: 5) [06:59:52 -108117.092953] AUTODETECT spr round 2 (radius: 10) [07:02:16 -72742.958416] AUTODETECT spr round 3 (radius: 15) [07:04:52 -60116.855348] AUTODETECT spr round 4 (radius: 20) [07:07:56 -53722.105863] AUTODETECT spr round 5 (radius: 25) [07:11:05 -47282.827803] SPR radius for FAST iterations: 25 (autodetect) [07:11:05 -47282.827803] Model parameter optimization (eps = 3.000000) [07:11:26 -47242.637106] FAST spr round 1 (radius: 25) [07:13:59 -36792.949076] FAST spr round 2 (radius: 25) [07:16:03 -35768.123512] FAST spr round 3 (radius: 25) [07:17:59 -35643.264640] FAST spr round 4 (radius: 25) [07:19:44 -35629.248094] FAST spr round 5 (radius: 25) [07:21:24 -35627.876677] FAST spr round 6 (radius: 25) [07:23:01 -35627.876192] Model parameter optimization (eps = 1.000000) [07:23:18 -35618.899616] SLOW spr round 1 (radius: 5) [07:25:13 -35604.955141] SLOW spr round 2 (radius: 5) [07:27:11 -35601.142044] SLOW spr round 3 (radius: 5) [07:28:42] [worker #1] ML tree search #17, logLikelihood: -35573.044205 [07:29:08 -35598.779275] SLOW spr round 4 (radius: 5) [07:31:04 -35597.918839] SLOW spr round 5 (radius: 5) [07:33:01 -35597.451497] SLOW spr round 6 (radius: 5) [07:34:56 -35597.451232] SLOW spr round 7 (radius: 10) [07:36:58 -35592.258110] SLOW spr round 8 (radius: 5) [07:39:23 -35590.930224] SLOW spr round 9 (radius: 5) [07:41:31 -35590.929170] SLOW spr round 10 (radius: 10) [07:43:40 -35586.300846] SLOW spr round 11 (radius: 5) [07:45:57 -35586.299889] SLOW spr round 12 (radius: 10) [07:48:07 -35586.299637] SLOW spr round 13 (radius: 15) [07:50:50 -35578.939386] SLOW spr round 14 (radius: 5) [07:53:17 -35577.153997] SLOW spr round 15 (radius: 5) [07:55:26 -35577.152992] SLOW spr round 16 (radius: 10) [07:57:33 -35577.152966] SLOW spr round 17 (radius: 15) [08:00:14 -35577.152849] SLOW spr round 18 (radius: 20) [08:03:45 -35576.357831] SLOW spr round 19 (radius: 5) [08:06:12 -35576.357598] SLOW spr round 20 (radius: 10) [08:08:33 -35576.357595] SLOW spr round 21 (radius: 15) [08:11:11 -35576.357593] SLOW spr round 22 (radius: 20) [08:14:43 -35576.357591] SLOW spr round 23 (radius: 25) [08:19:26 -35575.926459] SLOW spr round 24 (radius: 5) [08:21:54 -35575.926379] SLOW spr round 25 (radius: 10) [08:24:16 -35575.926371] SLOW spr round 26 (radius: 15) [08:26:54 -35575.926368] SLOW spr round 27 (radius: 20) [08:30:27 -35575.926366] SLOW spr round 28 (radius: 25) [08:35:09 -35575.926364] Model parameter optimization (eps = 0.100000) [08:35:20] [worker #0] ML tree search #16, logLikelihood: -35575.728387 [08:35:20 -237068.228017] Initial branch length optimization [08:35:24 -191627.952831] Model parameter optimization (eps = 10.000000) [08:36:30 -190602.623674] AUTODETECT spr round 1 (radius: 5) [08:38:55 -106827.207434] AUTODETECT spr round 2 (radius: 10) [08:41:18 -70922.974367] AUTODETECT spr round 3 (radius: 15) [08:43:55 -54659.962065] AUTODETECT spr round 4 (radius: 20) [08:46:40 -48801.855903] AUTODETECT spr round 5 (radius: 25) [08:49:36 -46427.745930] SPR radius for FAST iterations: 25 (autodetect) [08:49:36 -46427.745930] Model parameter optimization (eps = 3.000000) [08:49:55 -46391.776677] FAST spr round 1 (radius: 25) [08:50:23] [worker #1] ML tree search #20, logLikelihood: -35582.255515 [08:52:37 -37475.526329] FAST spr round 2 (radius: 25) [08:54:57 -35906.550956] FAST spr round 3 (radius: 25) [08:56:58 -35664.907433] FAST spr round 4 (radius: 25) [08:58:49 -35645.579210] FAST spr round 5 (radius: 25) [09:00:32 -35640.875848] FAST spr round 6 (radius: 25) [09:02:13 -35639.788175] FAST spr round 7 (radius: 25) [09:03:52 -35639.786955] Model parameter optimization (eps = 1.000000) [09:04:06 -35635.344907] SLOW spr round 1 (radius: 5) [09:06:05 -35623.108454] SLOW spr round 2 (radius: 5) [09:08:03 -35621.916125] SLOW spr round 3 (radius: 5) [09:09:56 -35621.915952] SLOW spr round 4 (radius: 10) [09:11:56 -35614.758242] SLOW spr round 5 (radius: 5) [09:14:17 -35614.751066] SLOW spr round 6 (radius: 10) [09:16:28 -35613.174369] SLOW spr round 7 (radius: 5) [09:18:44 -35613.174244] SLOW spr round 8 (radius: 10) [09:20:53 -35613.174185] SLOW spr round 9 (radius: 15) [09:23:34 -35602.619021] SLOW spr round 10 (radius: 5) [09:26:01 -35601.698042] SLOW spr round 11 (radius: 5) [09:28:15 -35601.299506] SLOW spr round 12 (radius: 5) [09:30:18 -35601.214836] SLOW spr round 13 (radius: 10) [09:32:19 -35601.212874] SLOW spr round 14 (radius: 15) [09:35:05 -35601.212384] SLOW spr round 15 (radius: 20) [09:38:49 -35596.447278] SLOW spr round 16 (radius: 5) [09:41:20 -35589.838584] SLOW spr round 17 (radius: 5) [09:43:34 -35589.838167] SLOW spr round 18 (radius: 10) [09:45:43 -35589.838121] SLOW spr round 19 (radius: 15) [09:48:25 -35589.838111] SLOW spr round 20 (radius: 20) [09:52:05 -35589.838108] SLOW spr round 21 (radius: 25) [09:56:43 -35589.838108] Model parameter optimization (eps = 0.100000) [09:56:57] [worker #0] ML tree search #19, logLikelihood: -35589.357213 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.240237,0.442647) (0.101179,0.411458) (0.336152,0.983481) (0.322432,1.617177) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -35554.778726 AIC score: 75119.557452 / AICc score: 8119179.557452 / BIC score: 80959.430498 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=136). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 1 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q7M4L6/3_mltree/Q7M4L6.raxml.bestTreeCollapsed Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q7M4L6/3_mltree/Q7M4L6.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q7M4L6/3_mltree/Q7M4L6.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q7M4L6/3_mltree/Q7M4L6.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q7M4L6/3_mltree/Q7M4L6.raxml.log Analysis started: 18-Jul-2021 07:35:06 / finished: 18-Jul-2021 17:32:04 Elapsed time: 35817.715 seconds