RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 13:34:40 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q719H9/2_msa/Q719H9_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q719H9/3_mltree/Q719H9.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q719H9/4_raxmlng_ancestral/Q719H9 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622802880 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q719H9/2_msa/Q719H9_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 257 sites WARNING: Sequences tr_B4QGG8_B4QGG8_DROSI_7240 and tr_D5SHR0_D5SHR0_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QGG8_B4QGG8_DROSI_7240 and tr_B4I7R9_B4I7R9_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QGG8_B4QGG8_DROSI_7240 and tr_B3MC67_B3MC67_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QGG8_B4QGG8_DROSI_7240 and tr_A0A1W4WAX8_A0A1W4WAX8_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4R1Q0_B4R1Q0_DROSI_7240 and tr_B4II53_B4II53_DROSE_7238 are exactly identical! WARNING: Sequences tr_E1BVH8_E1BVH8_CHICK_9031 and tr_G1N2S1_G1N2S1_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1BVH8_E1BVH8_CHICK_9031 and tr_A0A226N2S5_A0A226N2S5_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1BVH8_E1BVH8_CHICK_9031 and tr_A0A226PX22_A0A226PX22_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_U3IDW6_U3IDW6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A091ISZ5_A0A091ISZ5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A091WL66_A0A091WL66_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A087RC19_A0A087RC19_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A091WB89_A0A091WB89_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A099YX93_A0A099YX93_TINGU_94827 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A091GES8_A0A091GES8_9AVES_55661 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A0A0B1L9_A0A0A0B1L9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A2I0M9M9_A0A2I0M9M9_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A093IXP9_A0A093IXP9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A091HGK1_A0A091HGK1_CALAN_9244 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A1V4JIR7_A0A1V4JIR7_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A226NF60_A0A226NF60_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C5X2_E1C5X2_CHICK_9031 and tr_A0A226PG99_A0A226PG99_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1C6Z3_E1C6Z3_CHICK_9031 and tr_G3USL5_G3USL5_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_H0ZK18_H0ZK18_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_U3JU52_U3JU52_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_R0M7R2_R0M7R2_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_A0A091EUG9_A0A091EUG9_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_A0A091JQF3_A0A091JQF3_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_A0A091VKT5_A0A091VKT5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_A0A087RED6_A0A087RED6_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_A0A091W8D8_A0A091W8D8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_A0A091G9U1_A0A091G9U1_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_A0A0A0AM19_A0A0A0AM19_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_A0A2I0MVZ7_A0A2I0MVZ7_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_A0A093G581_A0A093G581_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_A0A091IW32_A0A091IW32_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1NJZ8_F1NJZ8_CHICK_9031 and tr_A0A1V4KG25_A0A1V4KG25_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_G1R434_G1R434_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_G3HDY8_G3HDY8_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_H2NW34_H2NW34_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_H2QED6_H2QED6_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_F6Z995_F6Z995_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_I3NAI2_I3NAI2_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_H0XBJ6_H0XBJ6_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and sp_Q719H9_KCTD1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_F6Q984_F6Q984_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_A0A2R8MJX2_A0A2R8MJX2_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_G1M6K6_G1M6K6_AILME_9646 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_A0A2I3N367_A0A2I3N367_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_A0A0D9RZ00_A0A0D9RZ00_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_A0A1U7U2I9_A0A1U7U2I9_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_A0A1U7Q7S8_A0A1U7Q7S8_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_A0A2K5M505_A0A2K5M505_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_A0A2K6BU48_A0A2K6BU48_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_A0A2K5YQ98_A0A2K5YQ98_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_A0A2R9BGF9_A0A2R9BGF9_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q5M956_KCTD1_MOUSE_10090 and tr_A0A2U3WQ95_A0A2U3WQ95_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y574_M3Y574_MUSPF_9669 and tr_A0A2Y9IWL2_A0A2Y9IWL2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y851_M3Y851_MUSPF_9669 and tr_G1P000_G1P000_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3Y851_M3Y851_MUSPF_9669 and tr_I3M7V2_I3M7V2_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Y851_M3Y851_MUSPF_9669 and tr_H0X7F3_H0X7F3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3Y851_M3Y851_MUSPF_9669 and sp_Q96SI1_KCD15_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Y851_M3Y851_MUSPF_9669 and tr_G5BXM0_G5BXM0_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3Y851_M3Y851_MUSPF_9669 and tr_F6T619_F6T619_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Y851_M3Y851_MUSPF_9669 and tr_G1MF22_G1MF22_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y851_M3Y851_MUSPF_9669 and sp_Q0VD00_KCD15_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Y851_M3Y851_MUSPF_9669 and tr_A0A091DIA9_A0A091DIA9_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3Y851_M3Y851_MUSPF_9669 and tr_A0A0D9QXA9_A0A0D9QXA9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Y851_M3Y851_MUSPF_9669 and tr_A0A2U3WAN6_A0A2U3WAN6_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y851_M3Y851_MUSPF_9669 and tr_A0A2Y9L4S5_A0A2Y9L4S5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2I3HI61_A0A2I3HI61_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G1P3J0_G1P3J0_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G3R567_G3R567_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2J8T1E8_A0A2J8T1E8_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_F6Y598_F6Y598_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_H2R3I1_H2R3I1_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_F7DTJ2_F7DTJ2_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_W5PRE8_W5PRE8_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G3V6Z2_G3V6Z2_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_I3M7I5_I3M7I5_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_H0XTH4_H0XTH4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and sp_Q8NC69_KCTD6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G3TND8_G3TND8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_F6TAC4_F6TAC4_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_F2Z5T4_F2Z5T4_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G1M033_G1M033_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_G7NZB5_G7NZB5_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A6QLT0_A6QLT0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_L5KAJ2_L5KAJ2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_M3WTR4_M3WTR4_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A0D9RI93_A0A0D9RI93_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A1S3AMW6_A0A1S3AMW6_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A1S3EMZ6_A0A1S3EMZ6_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A1U7TUF8_A0A1U7TUF8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A1U8C4V2_A0A1U8C4V2_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2K5LXE0_A0A2K5LXE0_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2K6DF58_A0A2K6DF58_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2R9AGM2_A0A2R9AGM2_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2U4CD00_A0A2U4CD00_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2U4CD01_A0A2U4CD01_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2U4CD06_A0A2U4CD06_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2U3ZSX1_A0A2U3ZSX1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2U3YVV3_A0A2U3YVV3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2Y9QVS3_A0A2Y9QVS3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2Y9IZ41_A0A2Y9IZ41_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2Y9NGL0_A0A2Y9NGL0_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A2Y9SUR4_A0A2Y9SUR4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A384D3E8_A0A384D3E8_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YZN4_M3YZN4_MUSPF_9669 and tr_A0A384AYA1_A0A384AYA1_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Z4Y5_M3Z4Y5_MUSPF_9669 and tr_E2RJY0_E2RJY0_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z4Y5_M3Z4Y5_MUSPF_9669 and tr_A0A337RZ36_A0A337RZ36_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Z4Y5_M3Z4Y5_MUSPF_9669 and tr_A0A2U3WNV1_A0A2U3WNV1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z4Y5_M3Z4Y5_MUSPF_9669 and tr_A0A2U3XWR1_A0A2U3XWR1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z4Y5_M3Z4Y5_MUSPF_9669 and tr_A0A2Y9JDE8_A0A2Y9JDE8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z6S3_M3Z6S3_MUSPF_9669 and tr_A0A2Y9JDB8_A0A2Y9JDB8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z7Y9_M3Z7Y9_MUSPF_9669 and tr_M3VK38_M3VK38_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Z7Y9_M3Z7Y9_MUSPF_9669 and tr_D2H3T7_D2H3T7_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z7Y9_M3Z7Y9_MUSPF_9669 and tr_G3MYS7_G3MYS7_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Z7Y9_M3Z7Y9_MUSPF_9669 and tr_A0A2U3YZ83_A0A2U3YZ83_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z7Y9_M3Z7Y9_MUSPF_9669 and tr_A0A2Y9KKH0_A0A2Y9KKH0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B4J7K8_B4J7K8_DROGR_7222 and tr_A0A0Q9X8A5_A0A0Q9X8A5_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4J7K8_B4J7K8_DROGR_7222 and tr_A0A0M3QVN5_A0A0M3QVN5_DROBS_30019 are exactly identical! WARNING: Sequences tr_A0A2I3GQS6_A0A2I3GQS6_NOMLE_61853 and tr_A0A2I2Y7Z6_A0A2I2Y7Z6_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GQS6_A0A2I3GQS6_NOMLE_61853 and tr_H2NJT2_H2NJT2_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GQS6_A0A2I3GQS6_NOMLE_61853 and tr_A0A2I3RJP4_A0A2I3RJP4_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GQS6_A0A2I3GQS6_NOMLE_61853 and sp_Q8WVF5_KCTD4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GQS6_A0A2I3GQS6_NOMLE_61853 and tr_F7F064_F7F064_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3GQS6_A0A2I3GQS6_NOMLE_61853 and tr_A0A096MMQ1_A0A096MMQ1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GQS6_A0A2I3GQS6_NOMLE_61853 and tr_A0A0D9SBA1_A0A0D9SBA1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3GQS6_A0A2I3GQS6_NOMLE_61853 and tr_A0A2K5KR67_A0A2K5KR67_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GQS6_A0A2I3GQS6_NOMLE_61853 and tr_A0A2K6B281_A0A2K6B281_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3GQS6_A0A2I3GQS6_NOMLE_61853 and tr_A0A2R8ZD76_A0A2R8ZD76_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3H2T3_A0A2I3H2T3_NOMLE_61853 and tr_G3R8K8_G3R8K8_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H2T3_A0A2I3H2T3_NOMLE_61853 and tr_A0A2J8VNT2_A0A2J8VNT2_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H2T3_A0A2I3H2T3_NOMLE_61853 and tr_H2QRP9_H2QRP9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H2T3_A0A2I3H2T3_NOMLE_61853 and sp_Q68DU8_KCD16_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H2T3_A0A2I3H2T3_NOMLE_61853 and tr_A0A2R9BRE7_A0A2R9BRE7_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HXD5_A0A2I3HXD5_NOMLE_61853 and tr_A0A1U7USF3_A0A1U7USF3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1PQG5_G1PQG5_MYOLU_59463 and tr_G3R3J8_G3R3J8_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1PQG5_G1PQG5_MYOLU_59463 and tr_H2NES6_H2NES6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1PQG5_G1PQG5_MYOLU_59463 and tr_H2Q4H2_H2Q4H2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1PQG5_G1PQG5_MYOLU_59463 and tr_F7ASN9_F7ASN9_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1PQG5_G1PQG5_MYOLU_59463 and tr_H0Y0I4_H0Y0I4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1PQG5_G1PQG5_MYOLU_59463 and sp_Q4G0X4_KCD21_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1PQG5_G1PQG5_MYOLU_59463 and tr_A0A2R8Z5X6_A0A2R8Z5X6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3I5C8_G3I5C8_CRIGR_10029 and tr_A0A1U7R9C6_A0A1U7R9C6_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2I2Z0P3_A0A2I2Z0P3_GORGO_9595 and tr_A0A2R8ZQX6_A0A2R8ZQX6_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NK28_H2NK28_PONAB_9601 and tr_I3N428_I3N428_ICTTR_43179 are exactly identical! WARNING: Sequences tr_H2NK28_H2NK28_PONAB_9601 and sp_Q96CX2_KCD12_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NK28_H2NK28_PONAB_9601 and tr_A0A0D9SBB6_A0A0D9SBB6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2NYC8_H2NYC8_PONAB_9601 and tr_A0A2K5ZVD5_A0A2K5ZVD5_MANLE_9568 are exactly identical! WARNING: Sequences tr_H2NYC8_H2NYC8_PONAB_9601 and tr_A0A2U3XH53_A0A2U3XH53_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1T669_G1T669_RABIT_9986 and tr_E2RM97_E2RM97_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1T669_G1T669_RABIT_9986 and tr_F6Q4C1_F6Q4C1_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1T669_G1T669_RABIT_9986 and tr_I3LNK6_I3LNK6_PIG_9823 are exactly identical! WARNING: Sequences tr_G1T669_G1T669_RABIT_9986 and tr_D2H0J5_D2H0J5_AILME_9646 are exactly identical! WARNING: Sequences tr_G1T669_G1T669_RABIT_9986 and tr_L5KEQ9_L5KEQ9_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1T669_G1T669_RABIT_9986 and tr_A0A1S2ZYQ4_A0A1S2ZYQ4_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1T669_G1T669_RABIT_9986 and tr_A0A2U3UZY6_A0A2U3UZY6_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1T669_G1T669_RABIT_9986 and tr_A0A2Y9N8K7_A0A2Y9N8K7_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1T669_G1T669_RABIT_9986 and tr_A0A2Y9FH75_A0A2Y9FH75_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1T669_G1T669_RABIT_9986 and tr_A0A384DE33_A0A384DE33_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1T669_G1T669_RABIT_9986 and tr_A0A384AHQ2_A0A384AHQ2_BALAS_310752 are exactly identical! WARNING: Sequences tr_Q28XM8_Q28XM8_DROPS_46245 and tr_B4GH98_B4GH98_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q299E5_Q299E5_DROPS_46245 and tr_B4G531_B4G531_DROPE_7234 are exactly identical! WARNING: Sequences tr_H2Q7K9_H2Q7K9_PANTR_9598 and sp_Q8N5I3_KCNRG_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2Q7K9_H2Q7K9_PANTR_9598 and tr_A0A2R8Z945_A0A2R8Z945_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6VCP9_F6VCP9_MONDO_13616 and tr_G3VLE9_G3VLE9_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7B231_F7B231_MONDO_13616 and tr_F7ECP0_F7ECP0_MONDO_13616 are exactly identical! WARNING: Sequences tr_F7EHK7_F7EHK7_MONDO_13616 and tr_G3W4X3_G3W4X3_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6QCZ4_F6QCZ4_HORSE_9796 and tr_A0A287ATB5_A0A287ATB5_PIG_9823 are exactly identical! WARNING: Sequences tr_F6QCZ4_F6QCZ4_HORSE_9796 and tr_A0A0A0MWG9_A0A0A0MWG9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6QCZ4_F6QCZ4_HORSE_9796 and tr_A0A1S3AS17_A0A1S3AS17_ERIEU_9365 are exactly identical! WARNING: Sequences tr_B5DF44_B5DF44_RAT_10116 and tr_A0A1U7R8J6_A0A1U7R8J6_MESAU_10036 are exactly identical! WARNING: Sequences tr_M4AQ32_M4AQ32_XIPMA_8083 and tr_A0A087Y9G4_A0A087Y9G4_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AQ32_M4AQ32_XIPMA_8083 and tr_A0A2I4CB89_A0A2I4CB89_9TELE_52670 are exactly identical! WARNING: Sequences tr_M4AQD8_M4AQD8_XIPMA_8083 and tr_I3JTM9_I3JTM9_ORENI_8128 are exactly identical! WARNING: Sequences tr_M4AQD8_M4AQD8_XIPMA_8083 and tr_A0A096M4E9_A0A096M4E9_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4B139_M4B139_XIPMA_8083 and tr_A0A087YQL4_A0A087YQL4_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A087ZU98_A0A087ZU98_APIME_7460 and tr_A0A2A3ELB5_A0A2A3ELB5_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088ACU7_A0A088ACU7_APIME_7460 and tr_A0A2A3ET42_A0A2A3ET42_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NJ09_A0A158NJ09_ATTCE_12957 and tr_A0A195BLG4_A0A195BLG4_9HYME_520822 are exactly identical! WARNING: Sequences tr_I3MXU5_I3MXU5_ICTTR_43179 and tr_G5AW64_G5AW64_HETGA_10181 are exactly identical! WARNING: Sequences tr_I3MXU5_I3MXU5_ICTTR_43179 and tr_A0A1S3EZJ5_A0A1S3EZJ5_DIPOR_10020 are exactly identical! WARNING: Sequences tr_I3NBR9_I3NBR9_ICTTR_43179 and tr_A0A1S3ESK6_A0A1S3ESK6_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A3B5K8W3_A0A3B5K8W3_TAKRU_31033 and tr_H3DCN3_H3DCN3_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A286Y3P3_A0A286Y3P3_CAVPO_10141 and tr_M3W8R1_M3W8R1_FELCA_9685 are exactly identical! WARNING: Sequences tr_F6UFC0_F6UFC0_MACMU_9544 and tr_A0A1U7TYE8_A0A1U7TYE8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_F7HK74_F7HK74_MACMU_9544 and tr_G7PNB8_G7PNB8_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HK74_F7HK74_MACMU_9544 and tr_A0A096N752_A0A096N752_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HK74_F7HK74_MACMU_9544 and tr_A0A0D9S952_A0A0D9S952_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HK74_F7HK74_MACMU_9544 and tr_A0A2K5KLZ4_A0A2K5KLZ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HK74_F7HK74_MACMU_9544 and tr_A0A2K6ASJ6_A0A2K6ASJ6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HK74_F7HK74_MACMU_9544 and tr_A0A2K5XLU1_A0A2K5XLU1_MANLE_9568 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A151N752_A0A151N752_ALLMI_8496 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A091EU53_A0A091EU53_CORBR_85066 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A091IYX2_A0A091IYX2_EGRGA_188379 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A091W6T6_A0A091W6T6_NIPNI_128390 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A087R8U9_A0A087R8U9_APTFO_9233 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A099Z6T9_A0A099Z6T9_TINGU_94827 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A091GJK8_A0A091GJK8_9AVES_55661 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A0A0AA31_A0A0A0AA31_CHAVO_50402 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A2I0M7W5_A0A2I0M7W5_COLLI_8932 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A091IHI2_A0A091IHI2_CALAN_9244 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A3Q0H4G5_A0A3Q0H4G5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A1V4K0F4_A0A1V4K0F4_PATFA_372326 are exactly identical! WARNING: Sequences tr_K7FP99_K7FP99_PELSI_13735 and tr_A0A218UIR5_A0A218UIR5_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZFV5_H0ZFV5_TAEGU_59729 and tr_U3KFG2_U3KFG2_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZFV5_H0ZFV5_TAEGU_59729 and tr_A0A091EP64_A0A091EP64_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZFV5_H0ZFV5_TAEGU_59729 and tr_A0A093QF42_A0A093QF42_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZFV5_H0ZFV5_TAEGU_59729 and tr_A0A218VD56_A0A218VD56_9PASE_299123 are exactly identical! WARNING: Sequences tr_E2C107_E2C107_HARSA_610380 and tr_A0A195DAN7_A0A195DAN7_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2C107_E2C107_HARSA_610380 and tr_A0A195FRJ2_A0A195FRJ2_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2C107_E2C107_HARSA_610380 and tr_A0A151IHU2_A0A151IHU2_9HYME_456900 are exactly identical! WARNING: Sequences tr_L5K5C2_L5K5C2_PTEAL_9402 and tr_A0A2U4AYI3_A0A2U4AYI3_TURTR_9739 are exactly identical! WARNING: Sequences tr_L5K5C2_L5K5C2_PTEAL_9402 and tr_A0A2U4AYI6_A0A2U4AYI6_TURTR_9739 are exactly identical! WARNING: Sequences tr_L5K5C2_L5K5C2_PTEAL_9402 and tr_A0A2Y9PBF5_A0A2Y9PBF5_DELLE_9749 are exactly identical! WARNING: Sequences tr_L5K5C2_L5K5C2_PTEAL_9402 and tr_A0A2Y9ENW4_A0A2Y9ENW4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_L5K5C2_L5K5C2_PTEAL_9402 and tr_A0A384BD61_A0A384BD61_BALAS_310752 are exactly identical! WARNING: Sequences tr_U3KJ31_U3KJ31_FICAL_59894 and tr_A0A091EQW2_A0A091EQW2_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3KKV8_U3KKV8_FICAL_59894 and tr_A0A091EQA7_A0A091EQA7_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3KKV8_U3KKV8_FICAL_59894 and tr_A0A218UMJ1_A0A218UMJ1_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A2I3LXV9_A0A2I3LXV9_PAPAN_9555 and tr_A0A2K5ZVK8_A0A2K5ZVK8_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0Q3T4H7_A0A0Q3T4H7_AMAAE_12930 and tr_A0A093HDP8_A0A093HDP8_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091IRQ5_A0A091IRQ5_EGRGA_188379 and tr_A0A099ZZ11_A0A099ZZ11_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091IRQ5_A0A091IRQ5_EGRGA_188379 and tr_A0A093GHN1_A0A093GHN1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091J1S7_A0A091J1S7_EGRGA_188379 and tr_A0A093RYR3_A0A093RYR3_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091J1S7_A0A091J1S7_EGRGA_188379 and tr_A0A091UNR6_A0A091UNR6_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091J1S7_A0A091J1S7_EGRGA_188379 and tr_A0A0A0A842_A0A0A0A842_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091J1S7_A0A091J1S7_EGRGA_188379 and tr_A0A093GG96_A0A093GG96_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091J1T0_A0A091J1T0_EGRGA_188379 and tr_A0A093SGG4_A0A093SGG4_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A093JMN2_A0A093JMN2_STRCA_441894 and tr_A0A099ZIZ4_A0A099ZIZ4_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091WNE6_A0A091WNE6_OPIHO_30419 and tr_A0A099ZWJ4_A0A099ZWJ4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0M2P2_A0A2I0M2P2_COLLI_8932 and tr_A0A1V4KN88_A0A1V4KN88_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1CSZ2_A0A0V1CSZ2_TRIBR_45882 and tr_A0A0V0VQL4_A0A0V0VQL4_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CSZ2_A0A0V1CSZ2_TRIBR_45882 and tr_A0A0V1AGE0_A0A0V1AGE0_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1CSZ2_A0A0V1CSZ2_TRIBR_45882 and tr_A0A0V1PGY0_A0A0V1PGY0_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CSZ2_A0A0V1CSZ2_TRIBR_45882 and tr_A0A0V0TW79_A0A0V0TW79_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0X158_A0A0V0X158_9BILA_92179 and tr_A0A0V1L3S1_A0A0V1L3S1_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A1S3JFF2_A0A1S3JFF2_LINUN_7574 and tr_A0A1S3JFL6_A0A1S3JFL6_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3KQU0_A0A1S3KQU0_SALSA_8030 and tr_A0A060WDV7_A0A060WDV7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B5XCE6_B5XCE6_SALSA_8030 and tr_A0A060WLP9_A0A060WLP9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MRL2_A0A226MRL2_CALSU_9009 and tr_A0A226PJG4_A0A226PJG4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0RI67_A0A2D0RI67_ICTPU_7998 and tr_A0A2D0RJX0_A0A2D0RJX0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5NTC6_A0A2K5NTC6_CERAT_9531 and tr_A0A2K6D8U7_A0A2K6D8U7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2K5NTC6_A0A2K5NTC6_CERAT_9531 and tr_A0A2K6AJX0_A0A2K6AJX0_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U3V8X4_A0A2U3V8X4_TURTR_9739 and tr_A0A2Y9PVU3_A0A2Y9PVU3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V8X4_A0A2U3V8X4_TURTR_9739 and tr_A0A2Y9FGA6_A0A2Y9FGA6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3V8X4_A0A2U3V8X4_TURTR_9739 and tr_A0A384AKB1_A0A384AKB1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4AHM4_A0A2U4AHM4_TURTR_9739 and tr_A0A2Y9PS16_A0A2Y9PS16_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3WIJ7_A0A2U3WIJ7_ODORO_9708 and tr_A0A2U3XXT8_A0A2U3XXT8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3ZWS2_A0A2U3ZWS2_ODORO_9708 and tr_A0A384C488_A0A384C488_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2Y9NCQ6_A0A2Y9NCQ6_DELLE_9749 and tr_A0A2Y9FDN8_A0A2Y9FDN8_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 253 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q719H9/4_raxmlng_ancestral/Q719H9.raxml.reduced.phy Alignment comprises 1 partitions and 257 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 257 Gaps: 21.64 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q719H9/4_raxmlng_ancestral/Q719H9.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q719H9/3_mltree/Q719H9.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 65 / 5200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -88997.866775 [00:00:00 -88997.866775] Initial branch length optimization [00:00:01 -79084.586210] Model parameter optimization (eps = 0.100000) [00:00:31] Tree #1, final logLikelihood: -78951.313034 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.074933,0.192419) (0.117746,0.342991) (0.443181,0.779402) (0.364140,1.647113) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q719H9/4_raxmlng_ancestral/Q719H9.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q719H9/4_raxmlng_ancestral/Q719H9.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q719H9/4_raxmlng_ancestral/Q719H9.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q719H9/4_raxmlng_ancestral/Q719H9.raxml.log Analysis started: 04-Jun-2021 13:34:40 / finished: 04-Jun-2021 13:35:14 Elapsed time: 33.697 seconds