RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 07-Jul-2021 21:46:33 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZVT0/2_msa/Q6ZVT0_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZVT0/3_mltree/Q6ZVT0 --seed 2 --threads 6 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZVT0/2_msa/Q6ZVT0_trimmed_msa.fasta [00:00:00] Loaded alignment with 301 taxa and 276 sites WARNING: Sequences tr_C3ZM76_C3ZM76_BRAFL_7739 and tr_C3ZM80_C3ZM80_BRAFL_7739 are exactly identical! WARNING: Sequences tr_A0A1D5RK23_A0A1D5RK23_MACMU_9544 and tr_A0A2K6BX74_A0A2K6BX74_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7CJW1_F7CJW1_MACMU_9544 and tr_A0A0D9RJW1_A0A0D9RJW1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F4X6J0_F4X6J0_ACREC_103372 and tr_A0A151I1A9_A0A151I1A9_9HYME_520822 are exactly identical! WARNING: Sequences tr_E3MEW5_E3MEW5_CAERE_31234 and tr_A0A261A0H9_A0A261A0H9_9PELO_1503980 are exactly identical! WARNING: Sequences tr_B3RVN6_B3RVN6_TRIAD_10228 and tr_A0A369SJF6_A0A369SJF6_9METZ_287889 are exactly identical! WARNING: Sequences tr_R1BMB1_R1BMB1_EMIHU_2903 and tr_R1F3T7_R1F3T7_EMIHU_2903 are exactly identical! WARNING: Sequences tr_R1C9U8_R1C9U8_EMIHU_2903 and tr_R1FKS8_R1FKS8_EMIHU_2903 are exactly identical! WARNING: Sequences tr_A0A067BKD1_A0A067BKD1_SAPPC_695850 and tr_T0QAF7_T0QAF7_9STRA_1156394 are exactly identical! WARNING: Duplicate sequences found: 9 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZVT0/3_mltree/Q6ZVT0.raxml.reduced.phy Alignment comprises 1 partitions and 276 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 276 / 276 Gaps: 12.43 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZVT0/3_mltree/Q6ZVT0.raxml.rba Parallelization scheme autoconfig: 6 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 301 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 276 / 22080 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -147504.088931] Initial branch length optimization [00:00:01 -121848.449011] Model parameter optimization (eps = 10.000000) [00:00:19 -121225.646516] AUTODETECT spr round 1 (radius: 5) [00:00:47 -92280.043728] AUTODETECT spr round 2 (radius: 10) [00:01:25 -74657.213177] AUTODETECT spr round 3 (radius: 15) [00:02:13 -65292.811719] AUTODETECT spr round 4 (radius: 20) [00:03:07 -64565.086081] AUTODETECT spr round 5 (radius: 25) [00:04:03 -64254.142083] SPR radius for FAST iterations: 25 (autodetect) [00:04:03 -64254.142083] Model parameter optimization (eps = 3.000000) [00:04:16 -64160.570815] FAST spr round 1 (radius: 25) [00:05:01 -58636.558398] FAST spr round 2 (radius: 25) [00:05:36 -58258.742395] FAST spr round 3 (radius: 25) [00:06:06 -58227.501335] FAST spr round 4 (radius: 25) [00:06:30 -58226.894079] FAST spr round 5 (radius: 25) [00:06:54 -58226.538583] FAST spr round 6 (radius: 25) [00:07:18 -58226.235936] FAST spr round 7 (radius: 25) [00:07:42 -58225.256037] FAST spr round 8 (radius: 25) [00:08:06 -58225.072361] FAST spr round 9 (radius: 25) [00:08:29 -58224.869827] FAST spr round 10 (radius: 25) [00:08:53 -58222.841482] FAST spr round 11 (radius: 25) [00:09:16 -58222.728164] FAST spr round 12 (radius: 25) [00:09:38 -58222.156948] FAST spr round 13 (radius: 25) [00:10:01 -58222.123925] Model parameter optimization (eps = 1.000000) [00:10:11 -58217.279054] SLOW spr round 1 (radius: 5) [00:10:55 -58208.972101] SLOW spr round 2 (radius: 5) [00:11:35 -58207.641796] SLOW spr round 3 (radius: 5) [00:12:15 -58207.641529] SLOW spr round 4 (radius: 10) [00:12:58 -58207.641514] SLOW spr round 5 (radius: 15) [00:14:31 -58207.641513] SLOW spr round 6 (radius: 20) [00:15:01] [worker #1] ML tree search #2, logLikelihood: -58215.629754 [00:16:14 -58207.641512] SLOW spr round 7 (radius: 25) [00:16:14] [worker #2] ML tree search #3, logLikelihood: -58210.249067 [00:17:15] [worker #3] ML tree search #4, logLikelihood: -58217.993665 [00:17:37 -58207.641512] Model parameter optimization (eps = 0.100000) [00:17:40] [worker #0] ML tree search #1, logLikelihood: -58207.613676 [00:17:40 -146974.865195] Initial branch length optimization [00:17:42 -120831.443146] Model parameter optimization (eps = 10.000000) [00:17:55] [worker #5] ML tree search #6, logLikelihood: -58224.937359 [00:18:03 -120175.756776] AUTODETECT spr round 1 (radius: 5) [00:18:30 -91904.348482] AUTODETECT spr round 2 (radius: 10) [00:19:06 -73517.858320] AUTODETECT spr round 3 (radius: 15) [00:19:54 -65653.588439] AUTODETECT spr round 4 (radius: 20) [00:21:02 -63295.746675] AUTODETECT spr round 5 (radius: 25) [00:22:02 -63294.442543] SPR radius for FAST iterations: 25 (autodetect) [00:22:02 -63294.442543] Model parameter optimization (eps = 3.000000) [00:22:18 -63211.949316] FAST spr round 1 (radius: 25) [00:23:07 -58459.713977] FAST spr round 2 (radius: 25) [00:23:20] [worker #4] ML tree search #5, logLikelihood: -58204.972591 [00:23:43 -58231.214122] FAST spr round 3 (radius: 25) [00:24:10 -58226.165195] FAST spr round 4 (radius: 25) [00:24:34 -58225.033243] FAST spr round 5 (radius: 25) [00:24:58 -58224.504418] FAST spr round 6 (radius: 25) [00:25:22 -58224.057341] FAST spr round 7 (radius: 25) [00:25:47 -58223.266831] FAST spr round 8 (radius: 25) [00:26:11 -58222.456030] FAST spr round 9 (radius: 25) [00:26:35 -58222.423974] Model parameter optimization (eps = 1.000000) [00:26:46 -58215.646327] SLOW spr round 1 (radius: 5) [00:27:33 -58206.189540] SLOW spr round 2 (radius: 5) [00:28:15 -58205.393963] SLOW spr round 3 (radius: 5) [00:28:54 -58205.393886] SLOW spr round 4 (radius: 10) [00:29:38 -58205.393878] SLOW spr round 5 (radius: 15) [00:31:02 -58205.393876] SLOW spr round 6 (radius: 20) [00:31:23] [worker #1] ML tree search #8, logLikelihood: -58206.687774 [00:32:41 -58205.393874] SLOW spr round 7 (radius: 25) [00:33:48] [worker #2] ML tree search #9, logLikelihood: -58204.885674 [00:34:05 -58205.393873] Model parameter optimization (eps = 0.100000) [00:34:08] [worker #0] ML tree search #7, logLikelihood: -58205.360178 [00:34:08 -146661.268363] Initial branch length optimization [00:34:09 -119591.580507] Model parameter optimization (eps = 10.000000) [00:34:30 -118904.030358] AUTODETECT spr round 1 (radius: 5) [00:34:54] [worker #5] ML tree search #12, logLikelihood: -58217.286556 [00:34:58 -88103.789262] AUTODETECT spr round 2 (radius: 10) [00:35:10] [worker #3] ML tree search #10, logLikelihood: -58207.828637 [00:35:36 -66304.803833] AUTODETECT spr round 3 (radius: 15) [00:36:24 -61914.880950] AUTODETECT spr round 4 (radius: 20) [00:37:27 -61775.925407] AUTODETECT spr round 5 (radius: 25) [00:38:28 -61775.913623] SPR radius for FAST iterations: 20 (autodetect) [00:38:28 -61775.913623] Model parameter optimization (eps = 3.000000) [00:38:43 -61704.924163] FAST spr round 1 (radius: 20) [00:39:30 -58410.666581] FAST spr round 2 (radius: 20) [00:40:06 -58262.017686] FAST spr round 3 (radius: 20) [00:40:33 -58258.815945] FAST spr round 4 (radius: 20) [00:40:59 -58257.151384] FAST spr round 5 (radius: 20) [00:41:25 -58254.804070] FAST spr round 6 (radius: 20) [00:41:51 -58253.178013] FAST spr round 7 (radius: 20) [00:42:16 -58251.381859] FAST spr round 8 (radius: 20) [00:42:40 -58250.334462] FAST spr round 9 (radius: 20) [00:43:05 -58250.145018] FAST spr round 10 (radius: 20) [00:43:30 -58248.902107] FAST spr round 11 (radius: 20) [00:43:55 -58248.356850] FAST spr round 12 (radius: 20) [00:43:58] [worker #4] ML tree search #11, logLikelihood: -58206.882908 [00:44:21 -58242.614997] FAST spr round 13 (radius: 20) [00:44:46 -58242.476195] FAST spr round 14 (radius: 20) [00:45:11 -58242.328431] FAST spr round 15 (radius: 20) [00:45:36 -58240.329069] FAST spr round 16 (radius: 20) [00:46:01 -58239.491948] FAST spr round 17 (radius: 20) [00:46:25 -58239.384228] FAST spr round 18 (radius: 20) [00:46:49 -58239.300793] Model parameter optimization (eps = 1.000000) [00:46:59 -58230.993126] SLOW spr round 1 (radius: 5) [00:47:48 -58217.961954] SLOW spr round 2 (radius: 5) [00:48:30 -58215.813553] SLOW spr round 3 (radius: 5) [00:49:11 -58215.812811] SLOW spr round 4 (radius: 10) [00:49:56 -58215.812767] SLOW spr round 5 (radius: 15) [00:50:33] [worker #1] ML tree search #14, logLikelihood: -58201.398083 [00:50:56] [worker #2] ML tree search #15, logLikelihood: -58208.901025 [00:51:22] [worker #3] ML tree search #16, logLikelihood: -58219.147248 [00:51:27 -58215.812759] SLOW spr round 6 (radius: 20) [00:52:00] [worker #5] ML tree search #18, logLikelihood: -58208.624591 [00:53:07 -58215.812757] SLOW spr round 7 (radius: 25) [00:54:30 -58215.812757] Model parameter optimization (eps = 0.100000) [00:54:36] [worker #0] ML tree search #13, logLikelihood: -58215.491129 [00:54:36 -145520.392914] Initial branch length optimization [00:54:37 -118983.458995] Model parameter optimization (eps = 10.000000) [00:54:59 -118343.479742] AUTODETECT spr round 1 (radius: 5) [00:55:26 -88875.857224] AUTODETECT spr round 2 (radius: 10) [00:56:03 -66620.451701] AUTODETECT spr round 3 (radius: 15) [00:56:51 -61860.869427] AUTODETECT spr round 4 (radius: 20) [00:57:40 -61283.231890] AUTODETECT spr round 5 (radius: 25) [00:58:29 -61267.161171] SPR radius for FAST iterations: 25 (autodetect) [00:58:29 -61267.161171] Model parameter optimization (eps = 3.000000) [00:58:46 -61158.613858] FAST spr round 1 (radius: 25) [00:59:22] [worker #4] ML tree search #17, logLikelihood: -58203.670043 [00:59:31 -58369.388890] FAST spr round 2 (radius: 25) [01:00:09 -58240.342380] FAST spr round 3 (radius: 25) [01:00:38 -58227.802173] FAST spr round 4 (radius: 25) [01:01:04 -58225.259695] FAST spr round 5 (radius: 25) [01:01:30 -58222.845467] FAST spr round 6 (radius: 25) [01:01:55 -58221.308261] FAST spr round 7 (radius: 25) [01:02:19 -58220.523575] FAST spr round 8 (radius: 25) [01:02:42 -58219.787885] FAST spr round 9 (radius: 25) [01:03:06 -58219.307783] FAST spr round 10 (radius: 25) [01:03:29 -58219.195380] FAST spr round 11 (radius: 25) [01:03:52 -58219.195316] Model parameter optimization (eps = 1.000000) [01:04:02 -58217.022526] SLOW spr round 1 (radius: 5) [01:04:46 -58211.831646] SLOW spr round 2 (radius: 5) [01:05:26 -58211.830247] SLOW spr round 3 (radius: 10) [01:06:11 -58211.830149] SLOW spr round 4 (radius: 15) [01:07:36 -58211.830134] SLOW spr round 5 (radius: 20) [01:08:59] [worker #1] ML tree search #20, logLikelihood: -58218.899092 [01:09:17 -58211.830130] SLOW spr round 6 (radius: 25) [01:10:43 -58211.830128] Model parameter optimization (eps = 0.100000) [01:10:46] [worker #0] ML tree search #19, logLikelihood: -58211.746887 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.210105,0.678251) (0.205005,0.647251) (0.348836,0.892065) (0.236054,1.752234) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -58201.398083 AIC score: 117612.796165 / AICc score: 850872.796165 / BIC score: 119803.138689 Free parameters (model + branch lengths): 605 WARNING: Number of free parameters (K=605) is larger than alignment size (n=276). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZVT0/3_mltree/Q6ZVT0.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZVT0/3_mltree/Q6ZVT0.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZVT0/3_mltree/Q6ZVT0.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZVT0/3_mltree/Q6ZVT0.raxml.log Analysis started: 07-Jul-2021 21:46:33 / finished: 07-Jul-2021 22:57:20 Elapsed time: 4246.806 seconds Consumed energy: 388.986 Wh (= 2 km in an electric car, or 10 km with an e-scooter!)