RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 19-Jun-2021 14:16:23 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q6ZUT3/2_msa/Q6ZUT3_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q6ZUT3/3_mltree/Q6ZUT3 --seed 2 --threads 4 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q6ZUT3/2_msa/Q6ZUT3_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 204 sites WARNING: Sequences tr_B4QDM7_B4QDM7_DROSI_7240 and sp_Q9V8R9_41_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QDM7_B4QDM7_DROSI_7240 and tr_B4HPC7_B4HPC7_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QW64_B4QW64_DROSI_7240 and tr_B4I3U6_B4I3U6_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QW64_B4QW64_DROSI_7240 and tr_B3M146_B3M146_DROAN_7217 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and sp_Q9Z2H5_E41L1_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_M3Z258_M3Z258_MUSPF_9669 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2I3GD50_A0A2I3GD50_NOMLE_61853 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_G1PJH0_G1PJH0_MYOLU_59463 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_G3SFI6_G3SFI6_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_H2P1T2_H2P1T2_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_G1SL22_G1SL22_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_E2QY03_E2QY03_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2I3RMK9_A0A2I3RMK9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_F6QNK6_F6QNK6_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_I3MXC7_I3MXC7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_H0WJ71_H0WJ71_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A286XY49_A0A286XY49_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and sp_Q9H4G0_E41L1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_F6UAX5_F6UAX5_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_G5B840_G5B840_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_G3SYG8_G3SYG8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2R8MGF6_A0A2R8MGF6_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A287AVU3_A0A287AVU3_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_G1LU01_G1LU01_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_F1N611_F1N611_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_L5JYJ9_L5JYJ9_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2I2UI66_A0A2I2UI66_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2I3M5V1_A0A2I3M5V1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A0D9RCE7_A0A0D9RCE7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A151NZB5_A0A151NZB5_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A0Q3PD55_A0A0Q3PD55_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A091ILY4_A0A091ILY4_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A091VTI4_A0A091VTI4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A091XCQ2_A0A091XCQ2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A091GE90_A0A091GE90_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2I0LNT3_A0A2I0LNT3_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A091HQ06_A0A091HQ06_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A1S3W5G7_A0A1S3W5G7_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A1S3EQ36_A0A1S3EQ36_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A3Q0DIL6_A0A3Q0DIL6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A1U7S345_A0A1U7S345_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A1U8CJ68_A0A1U8CJ68_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A1V4JEV0_A0A1V4JEV0_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A226MPZ8_A0A226MPZ8_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2K5NGU0_A0A2K5NGU0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2K6CKR6_A0A2K6CKR6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2K6A326_A0A2K6A326_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2R9AYJ0_A0A2R9AYJ0_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2U3VEU9_A0A2U3VEU9_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2U3YFV3_A0A2U3YFV3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2Y9QC34_A0A2Y9QC34_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2Y9IQN2_A0A2Y9IQN2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2Y9PMT5_A0A2Y9PMT5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A2Y9T614_A0A2Y9T614_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A384CNE7_A0A384CNE7_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A1D5P7E3_A0A1D5P7E3_CHICK_9031 and tr_A0A384B103_A0A384B103_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_G1NB16_G1NB16_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_U3IYL9_U3IYL9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_A0A151NEQ2_A0A151NEQ2_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_A0A091ILL9_A0A091ILL9_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_A0A091VLR5_A0A091VLR5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_A0A087RBG3_A0A087RBG3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_A0A093H678_A0A093H678_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_A0A091WYN4_A0A091WYN4_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_A0A091GJN4_A0A091GJN4_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_A0A0A0A3G3_A0A0A0A3G3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_A0A2I0MWM1_A0A2I0MWM1_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_A0A091ICF8_A0A091ICF8_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_A0A3Q0H866_A0A3Q0H866_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1D5PTP6_A0A1D5PTP6_CHICK_9031 and tr_A0A1V4KFS4_A0A1V4KFS4_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1BQY9_E1BQY9_CHICK_9031 and tr_G1MVM3_G1MVM3_MELGA_9103 are exactly identical! WARNING: Sequences sp_F1P065_FARP1_CHICK_9031 and tr_R4GFM0_R4GFM0_CHICK_9031 are exactly identical! WARNING: Sequences tr_R4GHW9_R4GHW9_CHICK_9031 and tr_G1NAZ2_G1NAZ2_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_M3Y0U1_M3Y0U1_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_G1R5G2_G1R5G2_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_G1PTX2_G1PTX2_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_G3SF44_G3SF44_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_E2RHR4_E2RHR4_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_H2QE82_H2QE82_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_F7DWA2_F7DWA2_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_Q9JMB3_Q9JMB3_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_I3NEA8_I3NEA8_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and sp_Q9Y2J2_E41L3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_G7NKD7_G7NKD7_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_U3FRC1_U3FRC1_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_G7PWE9_G7PWE9_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A2I2URV6_A0A2I2URV6_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A2I3MPL2_A0A2I3MPL2_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A0D9RYC3_A0A0D9RYC3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A1S2ZIK9_A0A1S2ZIK9_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A1S3G1E8_A0A1S3G1E8_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A3Q0DXH5_A0A3Q0DXH5_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A2K5MF59_A0A2K5MF59_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A2K6DME0_A0A2K6DME0_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A2K6ACJ9_A0A2K6ACJ9_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A2R9AJB0_A0A2R9AJB0_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A2U3ZT57_A0A2U3ZT57_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A2U3Y3R9_A0A2U3Y3R9_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A2Y9J0B9_A0A2Y9J0B9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9WV92_E41L3_MOUSE_10090 and tr_A0A384C0N4_A0A384C0N4_URSMA_29073 are exactly identical! WARNING: Sequences tr_W5J8B1_W5J8B1_ANODA_43151 and tr_F5HMU0_F5HMU0_ANOGA_7165 are exactly identical! WARNING: Sequences tr_W5JPB2_W5JPB2_ANODA_43151 and tr_Q7PVA6_Q7PVA6_ANOGA_7165 are exactly identical! WARNING: Sequences tr_W5JPB2_W5JPB2_ANODA_43151 and tr_A0A084WUL7_A0A084WUL7_ANOSI_74873 are exactly identical! WARNING: Sequences tr_M3XM72_M3XM72_MUSPF_9669 and tr_A0A2Y9LFN0_A0A2Y9LFN0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YJJ2_M3YJJ2_MUSPF_9669 and tr_U3KNB8_U3KNB8_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YJJ2_M3YJJ2_MUSPF_9669 and tr_E2REU8_E2REU8_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YJJ2_M3YJJ2_MUSPF_9669 and tr_F6V541_F6V541_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YJJ2_M3YJJ2_MUSPF_9669 and tr_H0WWL8_H0WWL8_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YJJ2_M3YJJ2_MUSPF_9669 and tr_I3LEG0_I3LEG0_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YJJ2_M3YJJ2_MUSPF_9669 and tr_G1LB95_G1LB95_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YJJ2_M3YJJ2_MUSPF_9669 and tr_A0A2U3W9L4_A0A2U3W9L4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YJJ2_M3YJJ2_MUSPF_9669 and tr_A0A2U3XSD7_A0A2U3XSD7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YJJ2_M3YJJ2_MUSPF_9669 and tr_A0A2Y9JD19_A0A2Y9JD19_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YT76_M3YT76_MUSPF_9669 and tr_G1LMG3_G1LMG3_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YT76_M3YT76_MUSPF_9669 and tr_A0A2U3ZGI3_A0A2U3ZGI3_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YT76_M3YT76_MUSPF_9669 and tr_A0A2Y9JDY5_A0A2Y9JDY5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YT76_M3YT76_MUSPF_9669 and tr_A0A384C3A0_A0A384C3A0_URSMA_29073 are exactly identical! WARNING: Sequences tr_B4JVC4_B4JVC4_DROGR_7222 and tr_B4MCP4_B4MCP4_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4JVC4_B4JVC4_DROGR_7222 and tr_B4KU65_B4KU65_DROMO_7230 are exactly identical! WARNING: Sequences tr_A0A2I3HA07_A0A2I3HA07_NOMLE_61853 and tr_G3S889_G3S889_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HA07_A0A2I3HA07_NOMLE_61853 and tr_H2NK68_H2NK68_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HA07_A0A2I3HA07_NOMLE_61853 and sp_Q5RAB8_FARP1_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HA07_A0A2I3HA07_NOMLE_61853 and tr_A0A2J8M965_A0A2J8M965_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HA07_A0A2I3HA07_NOMLE_61853 and sp_Q9Y4F1_FARP1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HA07_A0A2I3HA07_NOMLE_61853 and tr_A0A2R8ZCI4_A0A2R8ZCI4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QJB6_G1QJB6_NOMLE_61853 and tr_G3QKS3_G3QKS3_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QJB6_G1QJB6_NOMLE_61853 and tr_H2P7C3_H2P7C3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QJB6_G1QJB6_NOMLE_61853 and tr_H2QIM7_H2QIM7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QJB6_G1QJB6_NOMLE_61853 and sp_P29074_PTN4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QJB6_G1QJB6_NOMLE_61853 and tr_F6WK37_F6WK37_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QJB6_G1QJB6_NOMLE_61853 and tr_G7PN58_G7PN58_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QJB6_G1QJB6_NOMLE_61853 and tr_A0A096MX43_A0A096MX43_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QJB6_G1QJB6_NOMLE_61853 and tr_A0A0D9RVP8_A0A0D9RVP8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QJB6_G1QJB6_NOMLE_61853 and tr_A0A2K5LLE1_A0A2K5LLE1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QJB6_G1QJB6_NOMLE_61853 and tr_A0A2K6CIJ0_A0A2K6CIJ0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QJB6_G1QJB6_NOMLE_61853 and tr_A0A2K5ZW56_A0A2K5ZW56_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QM80_G1QM80_NOMLE_61853 and tr_G3SIP4_G3SIP4_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QM80_G1QM80_NOMLE_61853 and tr_A0A2I3SN54_A0A2I3SN54_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QM80_G1QM80_NOMLE_61853 and sp_Q6ZUT3_FRMD7_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_G3H1Y0_G3H1Y0_CRIGR_10029 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_G3QNS1_G3QNS1_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_H2N894_H2N894_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_A0A2J8JCK6_A0A2J8JCK6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and sp_P11171_41_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_F6WEM9_F6WEM9_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_G8F3Y8_G8F3Y8_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_A0A337SCX5_A0A337SCX5_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_A0A091E2W3_A0A091E2W3_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_A0A0D9S802_A0A0D9S802_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_A0A3Q0E4S0_A0A3Q0E4S0_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_A0A2K5LAS1_A0A2K5LAS1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_A0A2K5XLL1_A0A2K5XLL1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_A0A2R9BLM6_A0A2R9BLM6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_A0A2U4BKU0_A0A2U4BKU0_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_A0A2Y9LG36_A0A2Y9LG36_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1RFQ4_G1RFQ4_NOMLE_61853 and tr_A0A2Y9SY92_A0A2Y9SY92_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1RVX2_G1RVX2_NOMLE_61853 and tr_G3QZL4_G3QZL4_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RVX2_G1RVX2_NOMLE_61853 and tr_H2PKB6_H2PKB6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RVX2_G1RVX2_NOMLE_61853 and tr_H2QTQ8_H2QTQ8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RVX2_G1RVX2_NOMLE_61853 and sp_O43491_E41L2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RVX2_G1RVX2_NOMLE_61853 and tr_F7BWK5_F7BWK5_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RVX2_G1RVX2_NOMLE_61853 and tr_F7HVM0_F7HVM0_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RVX2_G1RVX2_NOMLE_61853 and tr_G7P362_G7P362_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RVX2_G1RVX2_NOMLE_61853 and tr_A0A096P067_A0A096P067_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RVX2_G1RVX2_NOMLE_61853 and tr_A0A0D9RVP3_A0A0D9RVP3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RVX2_G1RVX2_NOMLE_61853 and tr_A0A2K5NP78_A0A2K5NP78_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RVX2_G1RVX2_NOMLE_61853 and tr_A0A2K5ZFZ3_A0A2K5ZFZ3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RVX2_G1RVX2_NOMLE_61853 and tr_A0A2R9A1P9_A0A2R9A1P9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3GS69_G3GS69_CRIGR_10029 and tr_A0A3Q0D1L1_A0A3Q0D1L1_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3UQ83_G3UQ83_MELGA_9103 and tr_A0A091FXW5_A0A091FXW5_9AVES_55661 are exactly identical! WARNING: Sequences tr_G3UQ83_G3UQ83_MELGA_9103 and tr_A0A093I7W4_A0A093I7W4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G1SV09_G1SV09_RABIT_9986 and tr_G1LPV4_G1LPV4_AILME_9646 are exactly identical! WARNING: Sequences tr_G1SV09_G1SV09_RABIT_9986 and tr_M3XET0_M3XET0_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1SV09_G1SV09_RABIT_9986 and tr_A0A2Y9MG15_A0A2Y9MG15_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1SV09_G1SV09_RABIT_9986 and tr_A0A2Y9EL18_A0A2Y9EL18_PHYCD_9755 are exactly identical! WARNING: Sequences tr_B5DY72_B5DY72_DROPS_46245 and tr_B4GFH6_B4GFH6_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q28Z97_Q28Z97_DROPS_46245 and tr_B4GI25_B4GI25_DROPE_7234 are exactly identical! WARNING: Sequences tr_F7F4R0_F7F4R0_MONDO_13616 and tr_G3VML3_G3VML3_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7GDV6_F7GDV6_MONDO_13616 and tr_G3SXE5_G3SXE5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F7GDV6_F7GDV6_MONDO_13616 and tr_G3VZ11_G3VZ11_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7GEK9_F7GEK9_MONDO_13616 and tr_G3VXM0_G3VXM0_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5NX11_W5NX11_SHEEP_9940 and sp_Q9N179_41_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5NYI9_W5NYI9_SHEEP_9940 and tr_F1MFC6_F1MFC6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PSK2_W5PSK2_SHEEP_9940 and tr_G3MZC8_G3MZC8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PWQ4_W5PWQ4_SHEEP_9940 and tr_H0VKT6_H0VKT6_CAVPO_10141 are exactly identical! WARNING: Sequences tr_W5PWQ4_W5PWQ4_SHEEP_9940 and tr_E1BDB0_E1BDB0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PWQ4_W5PWQ4_SHEEP_9940 and tr_M3WB54_M3WB54_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q9WTP0_E41L1_RAT_10116 and tr_U3KE75_U3KE75_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q9WTP0_E41L1_RAT_10116 and tr_A0A091EA88_A0A091EA88_CORBR_85066 are exactly identical! WARNING: Sequences sp_Q9WTP0_E41L1_RAT_10116 and tr_A0A218U9K9_A0A218U9K9_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A3B5QDJ7_A0A3B5QDJ7_XIPMA_8083 and tr_A0A087YJN2_A0A087YJN2_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QQA1_A0A3B5QQA1_XIPMA_8083 and tr_A0A087X3G5_A0A087X3G5_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5R2F9_A0A3B5R2F9_XIPMA_8083 and tr_A0A087XPF0_A0A087XPF0_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A087ZW75_A0A087ZW75_APIME_7460 and tr_A0A2A3EN60_A0A2A3EN60_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A087ZZ33_A0A087ZZ33_APIME_7460 and tr_A0A0M9A1N6_A0A0M9A1N6_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A087ZZ33_A0A087ZZ33_APIME_7460 and tr_A0A154PCL7_A0A154PCL7_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A088A0P8_A0A088A0P8_APIME_7460 and tr_A0A2A3EPA2_A0A2A3EPA2_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NJY3_A0A158NJY3_ATTCE_12957 and tr_F4WIK9_F4WIK9_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NJY3_A0A158NJY3_ATTCE_12957 and tr_E2BKM9_E2BKM9_HARSA_610380 are exactly identical! WARNING: Sequences tr_A0A158NJY3_A0A158NJY3_ATTCE_12957 and tr_A0A151XE91_A0A151XE91_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NTJ5_A0A158NTJ5_ATTCE_12957 and tr_F4WQV9_F4WQV9_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NTJ5_A0A158NTJ5_ATTCE_12957 and tr_A0A151X3B0_A0A151X3B0_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NTJ5_A0A158NTJ5_ATTCE_12957 and tr_A0A195EF61_A0A195EF61_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NTJ5_A0A158NTJ5_ATTCE_12957 and tr_A0A195BQ22_A0A195BQ22_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NTJ5_A0A158NTJ5_ATTCE_12957 and tr_A0A195ESS5_A0A195ESS5_9HYME_34720 are exactly identical! WARNING: Sequences tr_H0X127_H0X127_OTOGA_30611 and tr_E1B7S3_E1B7S3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A286XG05_A0A286XG05_CAVPO_10141 and tr_G1L1H1_G1L1H1_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A0K0JFG3_A0A0K0JFG3_BRUMA_6279 and tr_A0A0R3R4U2_A0A0R3R4U2_9BILA_42155 are exactly identical! WARNING: Sequences tr_F7H3J1_F7H3J1_MACMU_9544 and tr_G7PVM2_G7PVM2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H3J1_F7H3J1_MACMU_9544 and tr_A0A096MYU4_A0A096MYU4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7H3J1_F7H3J1_MACMU_9544 and tr_A0A0D9RY59_A0A0D9RY59_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7H3J1_F7H3J1_MACMU_9544 and tr_A0A2K5LFI1_A0A2K5LFI1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7H3J1_F7H3J1_MACMU_9544 and tr_A0A2K6B6S0_A0A2K6B6S0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H3J1_F7H3J1_MACMU_9544 and tr_A0A2K5ZHG3_A0A2K5ZHG3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G5AP97_G5AP97_HETGA_10181 and tr_F7G9A8_F7G9A8_CALJA_9483 are exactly identical! WARNING: Sequences tr_E5SI88_E5SI88_TRISP_6334 and tr_A0A0V0RZ87_A0A0V0RZ87_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SI88_E5SI88_TRISP_6334 and tr_A0A0V1CU38_A0A0V1CU38_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SI88_E5SI88_TRISP_6334 and tr_A0A0V0WVM5_A0A0V0WVM5_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SI88_E5SI88_TRISP_6334 and tr_A0A0V0VRF9_A0A0V0VRF9_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SI88_E5SI88_TRISP_6334 and tr_A0A0V1LBD0_A0A0V1LBD0_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SI88_E5SI88_TRISP_6334 and tr_A0A0V1AFK8_A0A0V1AFK8_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SI88_E5SI88_TRISP_6334 and tr_A0A0V0XYG2_A0A0V0XYG2_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SI88_E5SI88_TRISP_6334 and tr_A0A0V1MXU0_A0A0V1MXU0_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SI88_E5SI88_TRISP_6334 and tr_A0A0V1PCP4_A0A0V1PCP4_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SI88_E5SI88_TRISP_6334 and tr_A0A0V1HRQ2_A0A0V1HRQ2_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5SI88_E5SI88_TRISP_6334 and tr_A0A0V0UCE4_A0A0V0UCE4_9BILA_144512 are exactly identical! WARNING: Sequences tr_E5SZ58_E5SZ58_TRISP_6334 and tr_A0A0V0RYW1_A0A0V0RYW1_9BILA_6336 are exactly identical! WARNING: Sequences tr_H0YR61_H0YR61_TAEGU_59729 and tr_A0A218US41_A0A218US41_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0Z2Q9_H0Z2Q9_TAEGU_59729 and tr_A0A091F1H9_A0A091F1H9_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0Z2Q9_H0Z2Q9_TAEGU_59729 and tr_A0A093PTT4_A0A093PTT4_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0Z2Q9_H0Z2Q9_TAEGU_59729 and tr_A0A218VBP3_A0A218VBP3_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0Z6W8_H0Z6W8_TAEGU_59729 and tr_A0A218UAC8_A0A218UAC8_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZIA9_H0ZIA9_TAEGU_59729 and tr_A0A093QDW2_A0A093QDW2_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZIA9_H0ZIA9_TAEGU_59729 and tr_A0A093G6U5_A0A093G6U5_DRYPU_118200 are exactly identical! WARNING: Sequences tr_H0ZIA9_H0ZIA9_TAEGU_59729 and tr_A0A218UUA3_A0A218UUA3_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZN80_H0ZN80_TAEGU_59729 and tr_A0A218V7K0_A0A218V7K0_9PASE_299123 are exactly identical! WARNING: Sequences tr_F4WT51_F4WT51_ACREC_103372 and tr_A0A151JF31_A0A151JF31_9HYME_471704 are exactly identical! WARNING: Sequences tr_F4WT51_F4WT51_ACREC_103372 and tr_A0A195AYX5_A0A195AYX5_9HYME_520822 are exactly identical! WARNING: Sequences tr_F4WT51_F4WT51_ACREC_103372 and tr_A0A195F7E3_A0A195F7E3_9HYME_34720 are exactly identical! WARNING: Sequences tr_E3M259_E3M259_CAERE_31234 and tr_A0A261CSU3_A0A261CSU3_9PELO_1503980 are exactly identical! WARNING: Sequences tr_B4M543_B4M543_DROVI_7244 and tr_B4KDC3_B4KDC3_DROMO_7230 are exactly identical! WARNING: Sequences tr_G1LY98_G1LY98_AILME_9646 and tr_A0A2U3VIL2_A0A2U3VIL2_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1LY98_G1LY98_AILME_9646 and tr_A0A384CE91_A0A384CE91_URSMA_29073 are exactly identical! WARNING: Sequences tr_G7PKH5_G7PKH5_MACFA_9541 and tr_A0A096N6X5_A0A096N6X5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7PKH5_G7PKH5_MACFA_9541 and tr_A0A2K5YE70_A0A2K5YE70_MANLE_9568 are exactly identical! WARNING: Sequences tr_U3JP83_U3JP83_FICAL_59894 and tr_A0A091ENH8_A0A091ENH8_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3JP83_U3JP83_FICAL_59894 and tr_A0A093SXG1_A0A093SXG1_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3JP83_U3JP83_FICAL_59894 and tr_A0A218VB00_A0A218VB00_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3KAZ6_U3KAZ6_FICAL_59894 and tr_A0A091EWV2_A0A091EWV2_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3KAZ6_U3KAZ6_FICAL_59894 and tr_A0A091USI0_A0A091USI0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3KAZ6_U3KAZ6_FICAL_59894 and tr_A0A091VVY7_A0A091VVY7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_U3KAZ6_U3KAZ6_FICAL_59894 and tr_A0A2I0MUH7_A0A2I0MUH7_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3I8R8_U3I8R8_ANAPL_8839 and tr_A0A091J328_A0A091J328_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A2K6VTH3_A0A2K6VTH3_ONCVO_6282 and tr_A0A182E9I5_A0A182E9I5_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067RE36_A0A067RE36_ZOONE_136037 and tr_A0A2J7QL78_A0A2J7QL78_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A151M3B5_A0A151M3B5_ALLMI_8496 and tr_A0A3Q0HCP3_A0A3Q0HCP3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MJW2_A0A151MJW2_ALLMI_8496 and tr_A0A1U7SFV5_A0A1U7SFV5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NRE8_A0A151NRE8_ALLMI_8496 and tr_A0A1U7SII2_A0A1U7SII2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151PG76_A0A151PG76_ALLMI_8496 and tr_A0A3Q0GE57_A0A3Q0GE57_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091JF72_A0A091JF72_EGRGA_188379 and tr_A0A091V6S4_A0A091V6S4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JF72_A0A091JF72_EGRGA_188379 and tr_A0A087QKA2_A0A087QKA2_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JF72_A0A091JF72_EGRGA_188379 and tr_A0A1V4J4F0_A0A1V4J4F0_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A091JF72_A0A091JF72_EGRGA_188379 and tr_A0A226NKJ0_A0A226NKJ0_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A091JF72_A0A091JF72_EGRGA_188379 and tr_A0A226PIZ3_A0A226PIZ3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A091JIF4_A0A091JIF4_EGRGA_188379 and tr_A0A087QTW3_A0A087QTW3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JIF4_A0A091JIF4_EGRGA_188379 and tr_A0A2I0MGM9_A0A2I0MGM9_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A091JIF4_A0A091JIF4_EGRGA_188379 and tr_A0A093I9M5_A0A093I9M5_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091JIF4_A0A091JIF4_EGRGA_188379 and tr_A0A1V4K5X0_A0A1V4K5X0_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1CWA8_A0A0V1CWA8_TRIBR_45882 and tr_A0A0V0V9H6_A0A0V0V9H6_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CWA8_A0A0V1CWA8_TRIBR_45882 and tr_A0A0V1LAK8_A0A0V1LAK8_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CWA8_A0A0V1CWA8_TRIBR_45882 and tr_A0A0V1PD38_A0A0V1PD38_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CWA8_A0A0V1CWA8_TRIBR_45882 and tr_A0A0V0TWJ0_A0A0V0TWJ0_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1S3W9Q5_A0A1S3W9Q5_ERIEU_9365 and tr_A0A2Y9SJT0_A0A2Y9SJT0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A1S3W9Q5_A0A1S3W9Q5_ERIEU_9365 and tr_A0A384BB38_A0A384BB38_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A1S3S881_A0A1S3S881_SALSA_8030 and tr_A0A060VR87_A0A060VR87_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1I7UHX7_A0A1I7UHX7_9PELO_1561998 and tr_A0A1I7UHX8_A0A1I7UHX8_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A226MFQ9_A0A226MFQ9_CALSU_9009 and tr_A0A226PE86_A0A226PE86_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0Q8M8_A0A2D0Q8M8_ICTPU_7998 and tr_A0A2D0QB94_A0A2D0QB94_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0R2I7_A0A2D0R2I7_ICTPU_7998 and tr_A0A2D0R404_A0A2D0R404_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RXB6_A0A2D0RXB6_ICTPU_7998 and tr_A0A2D0RXB9_A0A2D0RXB9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5NY10_A0A2K5NY10_CERAT_9531 and tr_A0A2K5YGY9_A0A2K5YGY9_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4B3T0_A0A2U4B3T0_TURTR_9739 and tr_A0A2U4B3U7_A0A2U4B3U7_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U4B3T0_A0A2U4B3T0_TURTR_9739 and tr_A0A2U4B3Y6_A0A2U4B3Y6_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U4B3T0_A0A2U4B3T0_TURTR_9739 and tr_A0A2U4B482_A0A2U4B482_TURTR_9739 are exactly identical! WARNING: Duplicate sequences found: 284 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q6ZUT3/3_mltree/Q6ZUT3.raxml.reduced.phy Alignment comprises 1 partitions and 204 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 204 / 204 Gaps: 0.76 % Invariant sites: 0.98 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q6ZUT3/3_mltree/Q6ZUT3.raxml.rba Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 204 / 16320 [00:00:00] Data distribution: max. searches per worker: 5 Starting ML tree search with 20 distinct starting trees [00:00:00 -271460.989745] Initial branch length optimization [00:00:05 -217992.575174] Model parameter optimization (eps = 10.000000) [00:01:06 -217225.495836] AUTODETECT spr round 1 (radius: 5) [00:04:07 -121822.670201] AUTODETECT spr round 2 (radius: 10) [00:07:12 -80195.170580] AUTODETECT spr round 3 (radius: 15) [00:10:24 -60495.756239] AUTODETECT spr round 4 (radius: 20) [00:13:59 -50650.516122] AUTODETECT spr round 5 (radius: 25) [00:18:03 -46826.244178] SPR radius for FAST iterations: 25 (autodetect) [00:18:03 -46826.244178] Model parameter optimization (eps = 3.000000) [00:18:34 -46763.961639] FAST spr round 1 (radius: 25) [00:21:22 -38929.840433] FAST spr round 2 (radius: 25) [00:23:37 -38395.556916] FAST spr round 3 (radius: 25) [00:25:36 -38340.306804] FAST spr round 4 (radius: 25) [00:27:24 -38335.440723] FAST spr round 5 (radius: 25) [00:29:08 -38335.440576] Model parameter optimization (eps = 1.000000) [00:29:31 -38320.502611] SLOW spr round 1 (radius: 5) [00:31:38 -38313.615576] SLOW spr round 2 (radius: 5) [00:33:48 -38313.614542] SLOW spr round 3 (radius: 10) [00:36:08 -38313.614356] SLOW spr round 4 (radius: 15) [00:39:33 -38313.614260] SLOW spr round 5 (radius: 20) [00:44:13 -38313.614231] SLOW spr round 6 (radius: 25) [00:51:14 -38313.614231] Model parameter optimization (eps = 0.100000) [00:51:21] [worker #0] ML tree search #1, logLikelihood: -38313.558146 [00:51:21 -274208.364137] Initial branch length optimization [00:51:25 -218164.757478] Model parameter optimization (eps = 10.000000) [00:52:15 -217345.455641] AUTODETECT spr round 1 (radius: 5) [00:55:15 -127293.809991] AUTODETECT spr round 2 (radius: 10) [00:56:31] [worker #1] ML tree search #2, logLikelihood: -38322.077098 [00:58:25 -79569.025589] AUTODETECT spr round 3 (radius: 15) [01:01:25 -62845.269901] AUTODETECT spr round 4 (radius: 20) [01:04:22] [worker #3] ML tree search #4, logLikelihood: -38309.812488 [01:04:46 -53602.286249] AUTODETECT spr round 5 (radius: 25) [01:08:33 -46796.576648] SPR radius for FAST iterations: 25 (autodetect) [01:08:33 -46796.576648] Model parameter optimization (eps = 3.000000) [01:09:00 -46734.623118] FAST spr round 1 (radius: 25) [01:09:42] [worker #2] ML tree search #3, logLikelihood: -38305.704887 [01:11:53 -38825.374664] FAST spr round 2 (radius: 25) [01:14:07 -38355.693163] FAST spr round 3 (radius: 25) [01:16:03 -38335.210248] FAST spr round 4 (radius: 25) [01:17:56 -38325.198869] FAST spr round 5 (radius: 25) [01:19:40 -38325.198608] Model parameter optimization (eps = 1.000000) [01:19:54 -38322.471740] SLOW spr round 1 (radius: 5) [01:22:03 -38314.887022] SLOW spr round 2 (radius: 5) [01:24:10 -38313.494574] SLOW spr round 3 (radius: 5) [01:26:20 -38313.494277] SLOW spr round 4 (radius: 10) [01:28:34 -38313.266261] SLOW spr round 5 (radius: 5) [01:31:16 -38313.266258] SLOW spr round 6 (radius: 10) [01:33:51 -38312.012498] SLOW spr round 7 (radius: 5) [01:36:29 -38312.012498] SLOW spr round 8 (radius: 10) [01:39:01 -38312.012498] SLOW spr round 9 (radius: 15) [01:42:06 -38312.012498] SLOW spr round 10 (radius: 20) [01:46:52 -38312.012498] SLOW spr round 11 (radius: 25) [01:53:48 -38312.012498] Model parameter optimization (eps = 0.100000) [01:53:57] [worker #0] ML tree search #5, logLikelihood: -38311.845554 [01:53:58 -270970.057934] Initial branch length optimization [01:54:02 -217045.508732] Model parameter optimization (eps = 10.000000) [01:54:45 -216247.040676] AUTODETECT spr round 1 (radius: 5) [01:57:45 -120835.019560] AUTODETECT spr round 2 (radius: 10) [02:00:50 -81600.136041] AUTODETECT spr round 3 (radius: 15) [02:03:58 -64822.083087] AUTODETECT spr round 4 (radius: 20) [02:08:12 -51695.219260] AUTODETECT spr round 5 (radius: 25) [02:12:23 -48283.749403] SPR radius for FAST iterations: 25 (autodetect) [02:12:23 -48283.749403] Model parameter optimization (eps = 3.000000) [02:12:36] [worker #1] ML tree search #6, logLikelihood: -38308.257675 [02:12:57 -48200.272793] FAST spr round 1 (radius: 25) [02:14:23] [worker #3] ML tree search #8, logLikelihood: -38297.388299 [02:15:37 -38853.488032] FAST spr round 2 (radius: 25) [02:17:58 -38399.506290] FAST spr round 3 (radius: 25) [02:18:34] [worker #2] ML tree search #7, logLikelihood: -38305.209857 [02:19:59 -38333.333515] FAST spr round 4 (radius: 25) [02:21:54 -38325.987760] FAST spr round 5 (radius: 25) [02:23:41 -38325.200518] FAST spr round 6 (radius: 25) [02:25:25 -38325.200436] Model parameter optimization (eps = 1.000000) [02:25:42 -38318.088019] SLOW spr round 1 (radius: 5) [02:27:49 -38313.579409] SLOW spr round 2 (radius: 5) [02:29:57 -38310.878493] SLOW spr round 3 (radius: 5) [02:32:09 -38309.718051] SLOW spr round 4 (radius: 5) [02:34:18 -38309.427552] SLOW spr round 5 (radius: 5) [02:36:24 -38309.427511] SLOW spr round 6 (radius: 10) [02:38:38 -38309.427506] SLOW spr round 7 (radius: 15) [02:41:58 -38309.427419] SLOW spr round 8 (radius: 20) [02:46:40 -38309.427419] SLOW spr round 9 (radius: 25) [02:53:38 -38309.427419] Model parameter optimization (eps = 0.100000) [02:53:51] [worker #0] ML tree search #9, logLikelihood: -38309.090809 [02:53:51 -274545.152487] Initial branch length optimization [02:53:55 -221525.060098] Model parameter optimization (eps = 10.000000) [02:54:44 -220736.102321] AUTODETECT spr round 1 (radius: 5) [02:57:46 -125194.388837] AUTODETECT spr round 2 (radius: 10) [03:00:51 -81490.437448] AUTODETECT spr round 3 (radius: 15) [03:03:49 -64215.700681] AUTODETECT spr round 4 (radius: 20) [03:07:15 -54848.127801] AUTODETECT spr round 5 (radius: 25) [03:11:23 -51636.932491] SPR radius for FAST iterations: 25 (autodetect) [03:11:23 -51636.932491] Model parameter optimization (eps = 3.000000) [03:11:40] [worker #1] ML tree search #10, logLikelihood: -38303.260191 [03:11:54 -51577.179535] FAST spr round 1 (radius: 25) [03:14:28 -42151.488472] FAST spr round 2 (radius: 25) [03:16:35 -39919.290433] FAST spr round 3 (radius: 25) [03:18:31 -38552.564737] FAST spr round 4 (radius: 25) [03:20:20 -38368.574107] FAST spr round 5 (radius: 25) [03:22:14 -38349.650277] FAST spr round 6 (radius: 25) [03:24:03 -38342.111159] FAST spr round 7 (radius: 25) [03:25:47 -38342.110918] Model parameter optimization (eps = 1.000000) [03:26:04 -38331.904243] SLOW spr round 1 (radius: 5) [03:27:35] [worker #3] ML tree search #12, logLikelihood: -38299.818571 [03:28:13 -38322.443332] SLOW spr round 2 (radius: 5) [03:30:26 -38322.442840] SLOW spr round 3 (radius: 10) [03:32:43 -38322.442822] SLOW spr round 4 (radius: 15) [03:35:58 -38304.395724] SLOW spr round 5 (radius: 5) [03:38:54 -38302.255226] SLOW spr round 6 (radius: 5) [03:41:27 -38301.970871] SLOW spr round 7 (radius: 5) [03:42:24] [worker #2] ML tree search #11, logLikelihood: -38312.948881 [03:43:47 -38301.970871] SLOW spr round 8 (radius: 10) [03:46:13 -38299.979382] SLOW spr round 9 (radius: 5) [03:48:55 -38299.979371] SLOW spr round 10 (radius: 10) [03:51:31 -38299.979371] SLOW spr round 11 (radius: 15) [03:54:37 -38299.979371] SLOW spr round 12 (radius: 20) [03:59:28 -38299.979371] SLOW spr round 13 (radius: 25) [04:06:38 -38299.979371] Model parameter optimization (eps = 0.100000) [04:06:50] [worker #0] ML tree search #13, logLikelihood: -38299.675052 [04:06:50 -269814.549397] Initial branch length optimization [04:06:54 -218283.667516] Model parameter optimization (eps = 10.000000) [04:07:41 -217500.092404] AUTODETECT spr round 1 (radius: 5) [04:10:46 -123326.625467] AUTODETECT spr round 2 (radius: 10) [04:13:55 -78954.621431] AUTODETECT spr round 3 (radius: 15) [04:17:02 -62387.615863] AUTODETECT spr round 4 (radius: 20) [04:19:49] [worker #3] ML tree search #16, logLikelihood: -38301.911036 [04:20:31 -52843.853162] AUTODETECT spr round 5 (radius: 25) [04:24:41 -47019.482942] SPR radius for FAST iterations: 25 (autodetect) [04:24:41 -47019.482942] Model parameter optimization (eps = 3.000000) [04:25:06 -46967.996517] FAST spr round 1 (radius: 25) [04:27:40 -39320.446326] FAST spr round 2 (radius: 25) [04:28:33] [worker #1] ML tree search #14, logLikelihood: -38313.134718 [04:29:56 -38417.216416] FAST spr round 3 (radius: 25) [04:31:55 -38342.213662] FAST spr round 4 (radius: 25) [04:33:46 -38332.117618] FAST spr round 5 (radius: 25) [04:35:31 -38331.080968] FAST spr round 6 (radius: 25) [04:37:14 -38331.080929] Model parameter optimization (eps = 1.000000) [04:37:34 -38311.887871] SLOW spr round 1 (radius: 5) [04:39:40 -38307.737180] SLOW spr round 2 (radius: 5) [04:41:49 -38306.970037] SLOW spr round 3 (radius: 5) [04:43:59 -38306.969494] SLOW spr round 4 (radius: 10) [04:46:18 -38305.873178] SLOW spr round 5 (radius: 5) [04:49:06 -38305.867597] SLOW spr round 6 (radius: 10) [04:51:47 -38303.298553] SLOW spr round 7 (radius: 5) [04:53:20] [worker #2] ML tree search #15, logLikelihood: -38299.870328 [04:54:25 -38303.298480] SLOW spr round 8 (radius: 10) [04:56:56 -38303.298465] SLOW spr round 9 (radius: 15) [05:00:09 -38299.461609] SLOW spr round 10 (radius: 5) [05:03:08 -38296.776319] SLOW spr round 11 (radius: 5) [05:05:39 -38296.775728] SLOW spr round 12 (radius: 10) [05:08:08 -38295.399986] SLOW spr round 13 (radius: 5) [05:10:50 -38294.932927] SLOW spr round 14 (radius: 5) [05:13:13 -38294.932882] SLOW spr round 15 (radius: 10) [05:15:36 -38294.932865] SLOW spr round 16 (radius: 15) [05:18:03] [worker #3] ML tree search #20, logLikelihood: -38322.860606 [05:18:52 -38294.932865] SLOW spr round 17 (radius: 20) [05:21:28] [worker #1] ML tree search #18, logLikelihood: -38306.980130 [05:23:39 -38294.932865] SLOW spr round 18 (radius: 25) [05:30:31 -38294.932865] Model parameter optimization (eps = 0.100000) [05:30:39] [worker #0] ML tree search #17, logLikelihood: -38294.924378 [06:00:20] [worker #2] ML tree search #19, logLikelihood: -38303.342037 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.289574,0.487555) (0.371032,0.683303) (0.248777,1.443009) (0.090617,2.718042) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -38294.924378 AIC score: 80599.848755 / AICc score: 8124659.848755 / BIC score: 87252.679343 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=204). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q6ZUT3/3_mltree/Q6ZUT3.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q6ZUT3/3_mltree/Q6ZUT3.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q6ZUT3/3_mltree/Q6ZUT3.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q6ZUT3/3_mltree/Q6ZUT3.raxml.log Analysis started: 19-Jun-2021 14:16:23 / finished: 19-Jun-2021 20:16:44 Elapsed time: 21620.609 seconds