RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 03-Jul-2021 09:08:16 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZRV2/2_msa/Q6ZRV2_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZRV2/3_mltree/Q6ZRV2 --seed 2 --threads 3 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZRV2/2_msa/Q6ZRV2_trimmed_msa.fasta [00:00:00] Loaded alignment with 781 taxa and 132 sites WARNING: Sequences tr_A0A1D5P2C0_A0A1D5P2C0_CHICK_9031 and tr_G1NJ02_G1NJ02_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5P2C0_A0A1D5P2C0_CHICK_9031 and tr_U3ITY4_U3ITY4_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5P2C0_A0A1D5P2C0_CHICK_9031 and tr_A0A091VK83_A0A091VK83_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5P2C0_A0A1D5P2C0_CHICK_9031 and tr_A0A0A0A7Z9_A0A0A0A7Z9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5P2C0_A0A1D5P2C0_CHICK_9031 and tr_A0A226MW58_A0A226MW58_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5P2C0_A0A1D5P2C0_CHICK_9031 and tr_A0A226PS68_A0A226PS68_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1BZ87_E1BZ87_CHICK_9031 and tr_G1N0P4_G1N0P4_MELGA_9103 are exactly identical! WARNING: Sequences sp_A2ARK0_FA83C_MOUSE_10090 and tr_G3HAQ3_G3HAQ3_CRIGR_10029 are exactly identical! WARNING: Sequences sp_A2ARK0_FA83C_MOUSE_10090 and tr_M0R501_M0R501_RAT_10116 are exactly identical! WARNING: Sequences sp_Q148V8_FA83H_MOUSE_10090 and tr_G3HWJ9_G3HWJ9_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q148V8_FA83H_MOUSE_10090 and tr_D3ZRK0_D3ZRK0_RAT_10116 are exactly identical! WARNING: Sequences sp_Q148V8_FA83H_MOUSE_10090 and tr_A0A3Q0CDN5_A0A3Q0CDN5_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q5SWY7_FA83G_MOUSE_10090 and tr_D3ZN30_D3ZN30_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XLU2_M3XLU2_MUSPF_9669 and tr_A0A2Y9IIS3_A0A2Y9IIS3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XUQ1_M3XUQ1_MUSPF_9669 and tr_E2RNN3_E2RNN3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XUQ1_M3XUQ1_MUSPF_9669 and tr_A0A2Y9K4W8_A0A2Y9K4W8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z201_M3Z201_MUSPF_9669 and tr_A0A2Y9IVU4_A0A2Y9IVU4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z278_M3Z278_MUSPF_9669 and tr_D2H448_D2H448_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z278_M3Z278_MUSPF_9669 and tr_A0A2U3ZMX9_A0A2U3ZMX9_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z278_M3Z278_MUSPF_9669 and tr_A0A384CNH9_A0A384CNH9_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3H9G1_A0A2I3H9G1_NOMLE_61853 and tr_G3RI11_G3RI11_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H9G1_A0A2I3H9G1_NOMLE_61853 and tr_H2P1X4_H2P1X4_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H9G1_A0A2I3H9G1_NOMLE_61853 and tr_H2QKC8_H2QKC8_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H9G1_A0A2I3H9G1_NOMLE_61853 and sp_Q9H4H8_FA83D_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H9G1_A0A2I3H9G1_NOMLE_61853 and tr_G7PGD6_G7PGD6_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3H9G1_A0A2I3H9G1_NOMLE_61853 and tr_A0A096NXF0_A0A096NXF0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3H9G1_A0A2I3H9G1_NOMLE_61853 and tr_A0A2K6CAY5_A0A2K6CAY5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3H9G1_A0A2I3H9G1_NOMLE_61853 and tr_A0A2K5YHR0_A0A2K5YHR0_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3H9G1_A0A2I3H9G1_NOMLE_61853 and tr_A0A2R9BBD9_A0A2R9BBD9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QSV9_G1QSV9_NOMLE_61853 and tr_H2PJF1_H2PJF1_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QSV9_G1QSV9_NOMLE_61853 and sp_Q5T0W9_FA83B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QSV9_G1QSV9_NOMLE_61853 and tr_F6Q2E7_F6Q2E7_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QSV9_G1QSV9_NOMLE_61853 and tr_G7P2W2_G7P2W2_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QSV9_G1QSV9_NOMLE_61853 and tr_A0A096NJC0_A0A096NJC0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QSV9_G1QSV9_NOMLE_61853 and tr_A0A2K6CJI3_A0A2K6CJI3_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QSV9_G1QSV9_NOMLE_61853 and tr_A0A2K5YUQ7_A0A2K5YUQ7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RS41_G1RS41_NOMLE_61853 and tr_G3RAE3_G3RAE3_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RS41_G1RS41_NOMLE_61853 and tr_H2NSZ6_H2NSZ6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RS41_G1RS41_NOMLE_61853 and tr_G8F169_G8F169_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RS41_G1RS41_NOMLE_61853 and tr_A0A096P340_A0A096P340_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RS41_G1RS41_NOMLE_61853 and tr_A0A2K5M706_A0A2K5M706_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RS41_G1RS41_NOMLE_61853 and tr_A0A2K6DLU4_A0A2K6DLU4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RS41_G1RS41_NOMLE_61853 and tr_A0A2K5Y4W0_A0A2K5Y4W0_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3GY01_G3GY01_CRIGR_10029 and tr_A0A1U7QZ25_A0A1U7QZ25_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2I2Z5W8_A0A2I2Z5W8_GORGO_9595 and tr_A0A2I3RSD4_A0A2I3RSD4_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Z5W8_A0A2I2Z5W8_GORGO_9595 and sp_Q8NEG4_FA83F_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Z5W8_A0A2I2Z5W8_GORGO_9595 and tr_A0A2R8ZYC9_A0A2R8ZYC9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QIH2_G3QIH2_GORGO_9595 and tr_H2QT81_H2QT81_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QIH2_G3QIH2_GORGO_9595 and tr_A0A2R9A0A2_A0A2R9A0A2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QY15_G3QY15_GORGO_9595 and tr_H2PRE3_H2PRE3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QY15_G3QY15_GORGO_9595 and tr_H2R9M6_H2R9M6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QY15_G3QY15_GORGO_9595 and tr_H0XXI3_H0XXI3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G3QY15_G3QY15_GORGO_9595 and tr_F7BZ38_F7BZ38_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QY15_G3QY15_GORGO_9595 and tr_U3D526_U3D526_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QY15_G3QY15_GORGO_9595 and tr_E1B8J6_E1B8J6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G3QY15_G3QY15_GORGO_9595 and tr_L5KLQ5_L5KLQ5_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G3QY15_G3QY15_GORGO_9595 and tr_A0A096NP98_A0A096NP98_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QY15_G3QY15_GORGO_9595 and tr_A0A0D9R992_A0A0D9R992_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QY15_G3QY15_GORGO_9595 and tr_A0A2K5M243_A0A2K5M243_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QY15_G3QY15_GORGO_9595 and tr_A0A2K6DXT7_A0A2K6DXT7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QY15_G3QY15_GORGO_9595 and tr_A0A2R9CD38_A0A2R9CD38_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R055_G3R055_GORGO_9595 and tr_H2QGR6_H2QGR6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R055_G3R055_GORGO_9595 and sp_Q2M2I3_FA83E_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NZG9_H2NZG9_PONAB_9601 and tr_A0A2R9CB51_A0A2R9CB51_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NMB5_G1NMB5_MELGA_9103 and tr_A0A226N6M7_A0A226N6M7_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1PQU4_F1PQU4_CANLF_9615 and tr_D2HLB1_D2HLB1_AILME_9646 are exactly identical! WARNING: Sequences tr_F1PQU4_F1PQU4_CANLF_9615 and tr_A0A2U3WA23_A0A2U3WA23_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1PQU4_F1PQU4_CANLF_9615 and tr_A0A384BPL9_A0A384BPL9_URSMA_29073 are exactly identical! WARNING: Sequences tr_J9P7P6_J9P7P6_CANLF_9615 and tr_A0A287BB87_A0A287BB87_PIG_9823 are exactly identical! WARNING: Sequences tr_J9P7P6_J9P7P6_CANLF_9615 and tr_M3WQT5_M3WQT5_FELCA_9685 are exactly identical! WARNING: Sequences tr_J9P7P6_J9P7P6_CANLF_9615 and tr_A0A2U3VYX9_A0A2U3VYX9_ODORO_9708 are exactly identical! WARNING: Sequences tr_J9P7P6_J9P7P6_CANLF_9615 and tr_A0A2U3YP22_A0A2U3YP22_LEPWE_9713 are exactly identical! WARNING: Sequences tr_J9P7P6_J9P7P6_CANLF_9615 and tr_A0A2Y9JEM0_A0A2Y9JEM0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H2QK93_H2QK93_PANTR_9598 and sp_Q9BQN1_FA83C_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QK93_H2QK93_PANTR_9598 and tr_A0A2R9BT29_A0A2R9BT29_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7B029_K7B029_PANTR_9598 and tr_A0A2R9BQZ1_A0A2R9BQZ1_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5NR74_W5NR74_SHEEP_9940 and sp_A3KN19_FA83D_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5NR74_W5NR74_SHEEP_9940 and tr_F1MRT0_F1MRT0_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q86UY5_FA83A_HUMAN_9606 and tr_A0A2R8ZRF5_A0A2R8ZRF5_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6WB81_F6WB81_MACMU_9544 and tr_A0A096NRJ8_A0A096NRJ8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6WB81_F6WB81_MACMU_9544 and tr_A0A0D9RE28_A0A0D9RE28_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6WB81_F6WB81_MACMU_9544 and tr_A0A2K5KHK7_A0A2K5KHK7_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6WB81_F6WB81_MACMU_9544 and tr_A0A2K6B4R0_A0A2K6B4R0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7E5I8_F7E5I8_MACMU_9544 and tr_A0A096NUP9_A0A096NUP9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7E5I8_F7E5I8_MACMU_9544 and tr_A0A0D9RDI0_A0A0D9RDI0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7E5I8_F7E5I8_MACMU_9544 and tr_A0A2K5P6W3_A0A2K5P6W3_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7E5I8_F7E5I8_MACMU_9544 and tr_A0A2K6B6W1_A0A2K6B6W1_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7E5I8_F7E5I8_MACMU_9544 and tr_A0A2K5XCX9_A0A2K5XCX9_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7GZ22_F7GZ22_MACMU_9544 and tr_A0A096NK74_A0A096NK74_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GZ22_F7GZ22_MACMU_9544 and tr_A0A0D9R157_A0A0D9R157_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7GZ22_F7GZ22_MACMU_9544 and tr_A0A2K5MFL2_A0A2K5MFL2_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7GZ22_F7GZ22_MACMU_9544 and tr_A0A2K6C3P0_A0A2K6C3P0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GZ22_F7GZ22_MACMU_9544 and tr_A0A2K5Z031_A0A2K5Z031_MANLE_9568 are exactly identical! WARNING: Sequences tr_G5BKM7_G5BKM7_HETGA_10181 and tr_A0A1S3F5T4_A0A1S3F5T4_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G5BKM7_G5BKM7_HETGA_10181 and tr_A0A1U7Q8J1_A0A1U7Q8J1_MESAU_10036 are exactly identical! WARNING: Sequences tr_H0ZQA2_H0ZQA2_TAEGU_59729 and tr_A0A091FWV5_A0A091FWV5_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZQA2_H0ZQA2_TAEGU_59729 and tr_A0A218VD87_A0A218VD87_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZRC5_H0ZRC5_TAEGU_59729 and tr_U3K1Y7_U3K1Y7_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZRC5_H0ZRC5_TAEGU_59729 and tr_A0A093QDL4_A0A093QDL4_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZRC5_H0ZRC5_TAEGU_59729 and tr_A0A218UC89_A0A218UC89_9PASE_299123 are exactly identical! WARNING: Sequences tr_G1LX52_G1LX52_AILME_9646 and tr_A0A2I2UH53_A0A2I2UH53_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1LX52_G1LX52_AILME_9646 and tr_A0A384BZ79_A0A384BZ79_URSMA_29073 are exactly identical! WARNING: Sequences tr_U3IYV1_U3IYV1_ANAPL_8839 and tr_A0A0Q3X9Z2_A0A0Q3X9Z2_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A0A0MXJ1_A0A0A0MXJ1_PAPAN_9555 and tr_A0A2K5P579_A0A2K5P579_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A151P037_A0A151P037_ALLMI_8496 and tr_A0A1U7SNT3_A0A1U7SNT3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151PEH0_A0A151PEH0_ALLMI_8496 and tr_A0A1U8DUY3_A0A1U8DUY3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3UPZ9_A0A0Q3UPZ9_AMAAE_12930 and tr_A0A091WI68_A0A091WI68_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A0Q3UPZ9_A0A0Q3UPZ9_AMAAE_12930 and tr_A0A0A0A2S2_A0A0A0A2S2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0Q3UPZ9_A0A0Q3UPZ9_AMAAE_12930 and tr_A0A2I0LKD5_A0A2I0LKD5_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A0Q3UPZ9_A0A0Q3UPZ9_AMAAE_12930 and tr_A0A1V4KMZ8_A0A1V4KMZ8_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A091JEU0_A0A091JEU0_EGRGA_188379 and tr_A0A087QLS8_A0A087QLS8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JWQ5_A0A091JWQ5_EGRGA_188379 and tr_A0A091VX87_A0A091VX87_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JWQ5_A0A091JWQ5_EGRGA_188379 and tr_A0A0A0A504_A0A0A0A504_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A087QY27_A0A087QY27_APTFO_9233 and tr_A0A091W9S9_A0A091W9S9_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A087QY27_A0A087QY27_APTFO_9233 and tr_A0A093IXF8_A0A093IXF8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A093HAD5_A0A093HAD5_STRCA_441894 and tr_A0A099YXP7_A0A099YXP7_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A093HAD5_A0A093HAD5_STRCA_441894 and tr_A0A091HUU3_A0A091HUU3_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091FV38_A0A091FV38_9AVES_55661 and tr_A0A093GPF3_A0A093GPF3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2I0LKL1_A0A2I0LKL1_COLLI_8932 and tr_A0A1V4KDU2_A0A1V4KDU2_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0LTI5_A0A2I0LTI5_COLLI_8932 and tr_A0A1V4KSK4_A0A1V4KSK4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MVF8_A0A2I0MVF8_COLLI_8932 and tr_A0A1V4JMR6_A0A1V4JMR6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MXF5_A0A2I0MXF5_COLLI_8932 and tr_A0A1V4KHE9_A0A1V4KHE9_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3N2Z9_A0A1S3N2Z9_SALSA_8030 and tr_A0A060W015_A0A060W015_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3RBV1_A0A1S3RBV1_SALSA_8030 and tr_A0A1S3S3U0_A0A1S3S3U0_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A226MD16_A0A226MD16_CALSU_9009 and tr_A0A226ME33_A0A226ME33_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NLY7_A0A226NLY7_CALSU_9009 and tr_A0A226PR56_A0A226PR56_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U3UZT3_A0A2U3UZT3_TURTR_9739 and tr_A0A2Y9PY94_A0A2Y9PY94_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4C1C9_A0A2U4C1C9_TURTR_9739 and tr_A0A2Y9QBB4_A0A2Y9QBB4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3WZX2_A0A2U3WZX2_ODORO_9708 and tr_A0A2U3YNX9_A0A2U3YNX9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A0S2ZYW5_A0A0S2ZYW5_DELLE_9749 and tr_A0A2Y9S7G5_A0A2Y9S7G5_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 130 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZRV2/3_mltree/Q6ZRV2.raxml.reduced.phy Alignment comprises 1 partitions and 132 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 132 / 132 Gaps: 3.85 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZRV2/3_mltree/Q6ZRV2.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 781 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 132 / 10560 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -173537.439574] Initial branch length optimization [00:00:02 -146734.694241] Model parameter optimization (eps = 10.000000) [00:00:26 -146582.322314] AUTODETECT spr round 1 (radius: 5) [00:01:42 -79427.342173] AUTODETECT spr round 2 (radius: 10) [00:02:59 -53908.573057] AUTODETECT spr round 3 (radius: 15) [00:04:28 -43488.450032] AUTODETECT spr round 4 (radius: 20) [00:06:07 -37048.720039] AUTODETECT spr round 5 (radius: 25) [00:07:50 -35809.423019] SPR radius for FAST iterations: 25 (autodetect) [00:07:50 -35809.423019] Model parameter optimization (eps = 3.000000) [00:08:04 -35765.227294] FAST spr round 1 (radius: 25) [00:09:20 -30193.917061] FAST spr round 2 (radius: 25) [00:10:24 -29878.905227] FAST spr round 3 (radius: 25) [00:11:26 -29781.947708] FAST spr round 4 (radius: 25) [00:12:22 -29776.299689] FAST spr round 5 (radius: 25) [00:13:15 -29775.667351] FAST spr round 6 (radius: 25) [00:14:07 -29775.667084] Model parameter optimization (eps = 1.000000) [00:14:21 -29770.932929] SLOW spr round 1 (radius: 5) [00:15:34 -29760.389053] SLOW spr round 2 (radius: 5) [00:16:44 -29760.261875] SLOW spr round 3 (radius: 5) [00:17:50 -29760.261688] SLOW spr round 4 (radius: 10) [00:18:58 -29759.835449] SLOW spr round 5 (radius: 5) [00:20:24 -29759.835445] SLOW spr round 6 (radius: 10) [00:21:42 -29759.835444] SLOW spr round 7 (radius: 15) [00:23:26 -29759.807969] SLOW spr round 8 (radius: 20) [00:26:26 -29759.098860] SLOW spr round 9 (radius: 5) [00:27:59 -29758.650473] SLOW spr round 10 (radius: 5) [00:28:34] [worker #2] ML tree search #3, logLikelihood: -29769.812188 [00:29:20 -29758.650473] SLOW spr round 11 (radius: 10) [00:30:35 -29758.650473] SLOW spr round 12 (radius: 15) [00:32:20 -29758.650472] SLOW spr round 13 (radius: 20) [00:35:17 -29758.650472] SLOW spr round 14 (radius: 25) [00:37:40] [worker #1] ML tree search #2, logLikelihood: -29754.210788 [00:38:53 -29758.650472] Model parameter optimization (eps = 0.100000) [00:38:59] [worker #0] ML tree search #1, logLikelihood: -29758.409943 [00:39:00 -173143.407276] Initial branch length optimization [00:39:02 -146361.215662] Model parameter optimization (eps = 10.000000) [00:39:24 -146223.025394] AUTODETECT spr round 1 (radius: 5) [00:40:38 -79538.540063] AUTODETECT spr round 2 (radius: 10) [00:41:53 -57582.542313] AUTODETECT spr round 3 (radius: 15) [00:43:21 -44824.199027] AUTODETECT spr round 4 (radius: 20) [00:45:08 -40316.015692] AUTODETECT spr round 5 (radius: 25) [00:47:08 -39007.419757] SPR radius for FAST iterations: 25 (autodetect) [00:47:08 -39007.419757] Model parameter optimization (eps = 3.000000) [00:47:24 -38954.034593] FAST spr round 1 (radius: 25) [00:48:44 -30874.709659] FAST spr round 2 (radius: 25) [00:49:55 -29868.520243] FAST spr round 3 (radius: 25) [00:50:57 -29783.139301] FAST spr round 4 (radius: 25) [00:51:54 -29771.911480] FAST spr round 5 (radius: 25) [00:52:48 -29771.268948] FAST spr round 6 (radius: 25) [00:53:40 -29771.267910] Model parameter optimization (eps = 1.000000) [00:53:51 -29767.770423] SLOW spr round 1 (radius: 5) [00:55:01 -29756.247046] SLOW spr round 2 (radius: 5) [00:56:07 -29756.246223] SLOW spr round 3 (radius: 10) [00:57:17 -29750.163035] SLOW spr round 4 (radius: 5) [00:58:09] [worker #2] ML tree search #6, logLikelihood: -29749.414345 [00:58:43 -29749.672234] SLOW spr round 5 (radius: 5) [00:59:59 -29748.747792] SLOW spr round 6 (radius: 5) [01:01:08 -29748.747736] SLOW spr round 7 (radius: 10) [01:02:16 -29748.747733] SLOW spr round 8 (radius: 15) [01:03:58 -29748.747729] SLOW spr round 9 (radius: 20) [01:05:04] [worker #1] ML tree search #5, logLikelihood: -29767.836623 [01:06:50 -29748.435488] SLOW spr round 10 (radius: 5) [01:08:21 -29748.435478] SLOW spr round 11 (radius: 10) [01:09:46 -29748.435478] SLOW spr round 12 (radius: 15) [01:11:25 -29748.435478] SLOW spr round 13 (radius: 20) [01:14:21 -29748.435478] SLOW spr round 14 (radius: 25) [01:18:04 -29748.435478] Model parameter optimization (eps = 0.100000) [01:18:13] [worker #0] ML tree search #4, logLikelihood: -29748.245108 [01:18:13 -171964.242617] Initial branch length optimization [01:18:16 -144392.940949] Model parameter optimization (eps = 10.000000) [01:18:39 -144300.449609] AUTODETECT spr round 1 (radius: 5) [01:19:55 -82305.403844] AUTODETECT spr round 2 (radius: 10) [01:21:15 -55718.244455] AUTODETECT spr round 3 (radius: 15) [01:22:39 -44296.247128] AUTODETECT spr round 4 (radius: 20) [01:24:22 -39387.771688] AUTODETECT spr round 5 (radius: 25) [01:26:19 -37628.184459] SPR radius for FAST iterations: 25 (autodetect) [01:26:19 -37628.184459] Model parameter optimization (eps = 3.000000) [01:26:34 -37575.368325] FAST spr round 1 (radius: 25) [01:27:56 -30534.639582] FAST spr round 2 (radius: 25) [01:29:05 -29835.815579] FAST spr round 3 (radius: 25) [01:30:10 -29772.714666] FAST spr round 4 (radius: 25) [01:31:08 -29770.151775] FAST spr round 5 (radius: 25) [01:32:03 -29770.114907] Model parameter optimization (eps = 1.000000) [01:32:14 -29761.167382] SLOW spr round 1 (radius: 5) [01:33:29 -29752.292169] SLOW spr round 2 (radius: 5) [01:34:29] [worker #2] ML tree search #9, logLikelihood: -29750.628037 [01:34:39 -29750.315533] SLOW spr round 3 (radius: 5) [01:35:47 -29750.315368] SLOW spr round 4 (radius: 10) [01:36:58 -29750.315353] SLOW spr round 5 (radius: 15) [01:38:43 -29750.256014] SLOW spr round 6 (radius: 20) [01:41:30 -29749.980396] SLOW spr round 7 (radius: 5) [01:43:05 -29749.291877] SLOW spr round 8 (radius: 5) [01:43:27] [worker #1] ML tree search #8, logLikelihood: -29752.360470 [01:44:28 -29748.048629] SLOW spr round 9 (radius: 5) [01:45:43 -29748.048608] SLOW spr round 10 (radius: 10) [01:46:54 -29748.048608] SLOW spr round 11 (radius: 15) [01:48:39 -29748.048608] SLOW spr round 12 (radius: 20) [01:51:28 -29748.048608] SLOW spr round 13 (radius: 25) [01:55:11 -29748.048608] Model parameter optimization (eps = 0.100000) [01:55:14] [worker #0] ML tree search #7, logLikelihood: -29748.022971 [01:55:14 -172894.585137] Initial branch length optimization [01:55:17 -146762.500204] Model parameter optimization (eps = 10.000000) [01:55:39 -146621.748294] AUTODETECT spr round 1 (radius: 5) [01:56:55 -76994.714810] AUTODETECT spr round 2 (radius: 10) [01:58:11 -54118.887474] AUTODETECT spr round 3 (radius: 15) [01:59:38 -44181.695040] AUTODETECT spr round 4 (radius: 20) [02:01:42 -36615.514785] AUTODETECT spr round 5 (radius: 25) [02:03:46 -35701.053651] SPR radius for FAST iterations: 25 (autodetect) [02:03:46 -35701.053651] Model parameter optimization (eps = 3.000000) [02:04:08 -35666.072193] FAST spr round 1 (radius: 25) [02:05:26 -30213.066016] FAST spr round 2 (radius: 25) [02:06:16] [worker #2] ML tree search #12, logLikelihood: -29742.312347 [02:06:32 -29801.667317] FAST spr round 3 (radius: 25) [02:07:36 -29775.824592] FAST spr round 4 (radius: 25) [02:08:34 -29774.193177] FAST spr round 5 (radius: 25) [02:09:32 -29767.402805] FAST spr round 6 (radius: 25) [02:10:12] [worker #1] ML tree search #11, logLikelihood: -29746.049344 [02:10:27 -29765.702104] FAST spr round 7 (radius: 25) [02:11:21 -29765.702085] Model parameter optimization (eps = 1.000000) [02:11:36 -29764.499391] SLOW spr round 1 (radius: 5) [02:12:49 -29757.452343] SLOW spr round 2 (radius: 5) [02:14:02 -29756.640809] SLOW spr round 3 (radius: 5) [02:15:13 -29756.640705] SLOW spr round 4 (radius: 10) [02:16:27 -29756.427725] SLOW spr round 5 (radius: 5) [02:17:58 -29750.987342] SLOW spr round 6 (radius: 5) [02:19:17 -29750.987308] SLOW spr round 7 (radius: 10) [02:20:31 -29750.987304] SLOW spr round 8 (radius: 15) [02:22:18 -29750.987303] SLOW spr round 9 (radius: 20) [02:25:12 -29750.987302] SLOW spr round 10 (radius: 25) [02:29:02 -29750.987302] Model parameter optimization (eps = 0.100000) [02:29:14] [worker #0] ML tree search #10, logLikelihood: -29749.488179 [02:29:14 -173448.718400] Initial branch length optimization [02:29:17 -146522.681886] Model parameter optimization (eps = 10.000000) [02:29:37 -146314.536119] AUTODETECT spr round 1 (radius: 5) [02:30:54 -81878.665762] AUTODETECT spr round 2 (radius: 10) [02:32:13 -53526.908647] AUTODETECT spr round 3 (radius: 15) [02:33:37 -43676.672422] AUTODETECT spr round 4 (radius: 20) [02:35:29 -36848.014496] AUTODETECT spr round 5 (radius: 25) [02:37:23 -35873.705809] SPR radius for FAST iterations: 25 (autodetect) [02:37:23 -35873.705809] Model parameter optimization (eps = 3.000000) [02:37:34] [worker #1] ML tree search #14, logLikelihood: -29760.100967 [02:37:38 -35828.236573] FAST spr round 1 (radius: 25) [02:39:00 -30118.412359] FAST spr round 2 (radius: 25) [02:39:54] [worker #2] ML tree search #15, logLikelihood: -29760.868281 [02:40:11 -29804.931479] FAST spr round 3 (radius: 25) [02:41:14 -29785.240086] FAST spr round 4 (radius: 25) [02:42:13 -29781.482628] FAST spr round 5 (radius: 25) [02:43:08 -29781.481437] Model parameter optimization (eps = 1.000000) [02:43:18 -29778.876866] SLOW spr round 1 (radius: 5) [02:44:32 -29762.987305] SLOW spr round 2 (radius: 5) [02:45:43 -29761.216999] SLOW spr round 3 (radius: 5) [02:46:52 -29758.496627] SLOW spr round 4 (radius: 5) [02:48:01 -29758.496444] SLOW spr round 5 (radius: 10) [02:49:12 -29758.057952] SLOW spr round 6 (radius: 5) [02:50:40 -29758.057949] SLOW spr round 7 (radius: 10) [02:51:59 -29758.057949] SLOW spr round 8 (radius: 15) [02:53:38 -29757.591113] SLOW spr round 9 (radius: 5) [02:55:11 -29757.591038] SLOW spr round 10 (radius: 10) [02:56:38 -29757.591035] SLOW spr round 11 (radius: 15) [02:58:17 -29757.591035] SLOW spr round 12 (radius: 20) [03:01:08 -29757.590999] SLOW spr round 13 (radius: 25) [03:04:44 -29757.590999] Model parameter optimization (eps = 0.100000) [03:04:48] [worker #0] ML tree search #13, logLikelihood: -29757.520672 [03:04:48 -172784.886062] Initial branch length optimization [03:04:52 -145496.634734] Model parameter optimization (eps = 10.000000) [03:05:00] [worker #1] ML tree search #17, logLikelihood: -29756.882210 [03:05:15 -145307.280169] AUTODETECT spr round 1 (radius: 5) [03:06:32 -81009.795025] AUTODETECT spr round 2 (radius: 10) [03:07:52 -52907.482591] AUTODETECT spr round 3 (radius: 15) [03:08:35] [worker #2] ML tree search #18, logLikelihood: -29748.540869 [03:09:17 -42513.913313] AUTODETECT spr round 4 (radius: 20) [03:10:58 -37068.798405] AUTODETECT spr round 5 (radius: 25) [03:12:42 -36087.665077] SPR radius for FAST iterations: 25 (autodetect) [03:12:42 -36087.665077] Model parameter optimization (eps = 3.000000) [03:12:57 -36043.858817] FAST spr round 1 (radius: 25) [03:14:16 -30375.152871] FAST spr round 2 (radius: 25) [03:15:23 -29819.010529] FAST spr round 3 (radius: 25) [03:16:27 -29788.064891] FAST spr round 4 (radius: 25) [03:17:23 -29785.528930] FAST spr round 5 (radius: 25) [03:18:17 -29785.528609] Model parameter optimization (eps = 1.000000) [03:18:27 -29782.052068] SLOW spr round 1 (radius: 5) [03:19:31 -29770.824650] SLOW spr round 2 (radius: 5) [03:20:34 -29770.824010] SLOW spr round 3 (radius: 10) [03:21:37 -29770.403686] SLOW spr round 4 (radius: 5) [03:22:54 -29770.403681] SLOW spr round 5 (radius: 10) [03:24:06 -29768.572947] SLOW spr round 6 (radius: 5) [03:25:23 -29766.618487] SLOW spr round 7 (radius: 5) [03:26:31 -29765.693651] SLOW spr round 8 (radius: 5) [03:27:36 -29765.693558] SLOW spr round 9 (radius: 10) [03:28:41 -29765.693546] SLOW spr round 10 (radius: 15) [03:30:20 -29765.693455] SLOW spr round 11 (radius: 20) [03:33:03 -29765.693420] SLOW spr round 12 (radius: 25) [03:34:44] [worker #1] ML tree search #20, logLikelihood: -29753.767115 [03:36:33 -29765.249911] SLOW spr round 13 (radius: 5) [03:38:00 -29765.249106] SLOW spr round 14 (radius: 10) [03:39:20 -29765.249035] SLOW spr round 15 (radius: 15) [03:40:56 -29765.249028] SLOW spr round 16 (radius: 20) [03:43:42 -29765.249028] SLOW spr round 17 (radius: 25) [03:47:10 -29765.249022] Model parameter optimization (eps = 0.100000) [03:47:19] [worker #0] ML tree search #16, logLikelihood: -29764.866871 [03:47:19 -172525.759366] Initial branch length optimization [03:47:23 -145992.586100] Model parameter optimization (eps = 10.000000) [03:47:43 -145832.597941] AUTODETECT spr round 1 (radius: 5) [03:48:53 -79060.206231] AUTODETECT spr round 2 (radius: 10) [03:50:02 -51551.772860] AUTODETECT spr round 3 (radius: 15) [03:51:20 -40308.822253] AUTODETECT spr round 4 (radius: 20) [03:52:51 -35880.119652] AUTODETECT spr round 5 (radius: 25) [03:54:25 -35242.142015] SPR radius for FAST iterations: 25 (autodetect) [03:54:25 -35242.142015] Model parameter optimization (eps = 3.000000) [03:54:38 -35202.657767] FAST spr round 1 (radius: 25) [03:55:46 -30259.804466] FAST spr round 2 (radius: 25) [03:56:44 -29814.165959] FAST spr round 3 (radius: 25) [03:57:41 -29783.068521] FAST spr round 4 (radius: 25) [03:58:35 -29780.850806] FAST spr round 5 (radius: 25) [03:59:27 -29780.849644] Model parameter optimization (eps = 1.000000) [03:59:42 -29776.612974] SLOW spr round 1 (radius: 5) [04:00:52 -29761.581184] SLOW spr round 2 (radius: 5) [04:02:02 -29753.764163] SLOW spr round 3 (radius: 5) [04:03:09 -29752.302606] SLOW spr round 4 (radius: 5) [04:04:15 -29752.302545] SLOW spr round 5 (radius: 10) [04:05:23 -29751.193178] SLOW spr round 6 (radius: 5) [04:06:49 -29751.047688] SLOW spr round 7 (radius: 5) [04:08:05 -29750.957804] SLOW spr round 8 (radius: 10) [04:09:14 -29750.957795] SLOW spr round 9 (radius: 15) [04:10:55 -29749.856357] SLOW spr round 10 (radius: 5) [04:12:25 -29749.856354] SLOW spr round 11 (radius: 10) [04:13:49 -29749.856353] SLOW spr round 12 (radius: 15) [04:15:26 -29749.856352] SLOW spr round 13 (radius: 20) [04:18:15 -29749.856296] SLOW spr round 14 (radius: 25) [04:22:00 -29749.856295] Model parameter optimization (eps = 0.100000) [04:22:04] [worker #0] ML tree search #19, logLikelihood: -29749.846493 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.146748,0.465055) (0.356619,0.598658) (0.312879,1.004037) (0.183754,2.199240) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -29742.312347 AIC score: 62614.624694 / AICc score: 4964194.624694 / BIC score: 67126.209703 Free parameters (model + branch lengths): 1565 WARNING: Number of free parameters (K=1565) is larger than alignment size (n=132). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZRV2/3_mltree/Q6ZRV2.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZRV2/3_mltree/Q6ZRV2.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZRV2/3_mltree/Q6ZRV2.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZRV2/3_mltree/Q6ZRV2.raxml.log Analysis started: 03-Jul-2021 09:08:16 / finished: 03-Jul-2021 13:30:21 Elapsed time: 15724.850 seconds Consumed energy: 1395.228 Wh (= 7 km in an electric car, or 35 km with an e-scooter!)