RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 03-Jul-2021 03:58:15 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMY3/2_msa/Q6ZMY3_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMY3/3_mltree/Q6ZMY3 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMY3/2_msa/Q6ZMY3_trimmed_msa.fasta
[00:00:00] Loaded alignment with 486 taxa and 49 sites

WARNING: Sequences tr_V7AUT3_V7AUT3_PHAVU_3885 and tr_A0A0L9UH89_A0A0L9UH89_PHAAN_3914 are exactly identical!
WARNING: Sequences tr_V7AUT3_V7AUT3_PHAVU_3885 and tr_A0A1S3U5D9_A0A1S3U5D9_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_V7AUT3_V7AUT3_PHAVU_3885 and tr_A0A3Q0F298_A0A3Q0F298_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_E2A2E2_E2A2E2_CAMFO_104421 and tr_A0A026WJU0_A0A026WJU0_OOCBI_2015173 are exactly identical!
WARNING: Sequences tr_E2A2E2_E2A2E2_CAMFO_104421 and tr_A0A151XI78_A0A151XI78_9HYME_64791 are exactly identical!
WARNING: Sequences tr_E2A2E2_E2A2E2_CAMFO_104421 and tr_A0A195CJH6_A0A195CJH6_9HYME_456900 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_G1NM79_G1NM79_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_U3IF17_U3IF17_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_A0A0Q3M144_A0A0Q3M144_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_A0A091J8T4_A0A091J8T4_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_A0A091VYZ5_A0A091VYZ5_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_A0A087R2Z0_A0A087R2Z0_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_A0A2I0MU88_A0A2I0MU88_COLLI_8932 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_A0A093GS58_A0A093GS58_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_A0A1V4JML6_A0A1V4JML6_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A1D5NXL6_A0A1D5NXL6_CHICK_9031 and tr_A0A226NJY8_A0A226NJY8_COLVI_9014 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_M3XVK0_M3XVK0_MUSPF_9669 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_M3Z9Y0_M3Z9Y0_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_G1PJ84_G1PJ84_MYOLU_59463 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_G3QY21_G3QY21_GORGO_9595 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_H2PJH2_H2PJH2_PONAB_9601 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_E2R727_E2R727_CANLF_9615 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_H2R1J9_H2R1J9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_F6Z279_F6Z279_ORNAN_9258 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_F7FQJ5_F7FQJ5_MONDO_13616 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_F6U8G7_F6U8G7_HORSE_9796 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_W5PS42_W5PS42_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_D3ZKI5_D3ZKI5_RAT_10116 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_I3MYS1_I3MYS1_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_H0WTL9_H0WTL9_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and sp_Q92576_PHF3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_G3WD84_G3WD84_SARHA_9305 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_F7EA95_F7EA95_CALJA_9483 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_D2HTS9_D2HTS9_AILME_9646 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_G5E5M1_G5E5M1_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_L5JPV4_L5JPV4_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A2I2UYR6_A0A2I2UYR6_FELCA_9685 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A0D9RM23_A0A0D9RM23_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A1S3WVI6_A0A1S3WVI6_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A1S3FFB7_A0A1S3FFB7_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A1U7TF02_A0A1U7TF02_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A2R8ZVE0_A0A2R8ZVE0_PANPA_9597 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A2U4AV19_A0A2U4AV19_TURTR_9739 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A2U3ZYG6_A0A2U3ZYG6_ODORO_9708 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A2U3YVR0_A0A2U3YVR0_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A2Y9KA44_A0A2Y9KA44_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A2Y9MJM5_A0A2Y9MJM5_DELLE_9749 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A2Y9TJC0_A0A2Y9TJC0_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A384BLP4_A0A384BLP4_URSMA_29073 are exactly identical!
WARNING: Sequences tr_B2RQG2_B2RQG2_MOUSE_10090 and tr_A0A383ZVW9_A0A383ZVW9_BALAS_310752 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_G1PUG8_G1PUG8_MYOLU_59463 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_G1SXU4_G1SXU4_RABIT_9986 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_F1PLS2_F1PLS2_CANLF_9615 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_F6R2K2_F6R2K2_MONDO_13616 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_F7BUQ9_F7BUQ9_HORSE_9796 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_D3ZWL9_D3ZWL9_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_H0X9W8_H0X9W8_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_H0V463_H0V463_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_G5C8E1_G5C8E1_HETGA_10181 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_G3W6X4_G3W6X4_SARHA_9305 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_G1MG30_G1MG30_AILME_9646 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A091E456_A0A091E456_FUKDA_885580 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A1S3W8V9_A0A1S3W8V9_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A1S3GAV2_A0A1S3GAV2_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A1U7UR10_A0A1U7UR10_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A1U8C120_A0A1U8C120_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A2Y9RUV0_A0A2Y9RUV0_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_Q8C9B9_DIDO1_MOUSE_10090 and tr_A0A384BV03_A0A384BV03_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3Y9E1_M3Y9E1_MUSPF_9669 and tr_A0A2Y9IPC7_A0A2Y9IPC7_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YV89_M3YV89_MUSPF_9669 and tr_A0A2Y9IXF3_A0A2Y9IXF3_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_C5XXZ4_C5XXZ4_SORBI_4558 and tr_K7UAL3_K7UAL3_MAIZE_4577 are exactly identical!
WARNING: Sequences tr_C5XXZ4_C5XXZ4_SORBI_4558 and tr_A0A2T7F3J6_A0A2T7F3J6_9POAL_1504633 are exactly identical!
WARNING: Sequences tr_A0A0B4K6G3_A0A0B4K6G3_DROME_7227 and tr_B4HGY5_B4HGY5_DROSE_7238 are exactly identical!
WARNING: Sequences tr_G1QNN7_G1QNN7_NOMLE_61853 and tr_H2R1B9_H2R1B9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1QNN7_G1QNN7_NOMLE_61853 and sp_Q6ZMY3_SPOC1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1QNN7_G1QNN7_NOMLE_61853 and tr_A0A2R8ZBG3_A0A2R8ZBG3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3RTI5_G3RTI5_GORGO_9595 and tr_H2P2K1_H2P2K1_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3RTI5_G3RTI5_GORGO_9595 and tr_K7DQ90_K7DQ90_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RTI5_G3RTI5_GORGO_9595 and sp_Q9BTC0_DIDO1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RTI5_G3RTI5_GORGO_9595 and tr_F6S3Q3_F6S3Q3_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G3RTI5_G3RTI5_GORGO_9595 and tr_A0A096NN91_A0A096NN91_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3RTI5_G3RTI5_GORGO_9595 and tr_A0A0D9RUJ1_A0A0D9RUJ1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G3RTI5_G3RTI5_GORGO_9595 and tr_A0A2K5LXP4_A0A2K5LXP4_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G3RTI5_G3RTI5_GORGO_9595 and tr_A0A2K6CM38_A0A2K6CM38_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G3RTI5_G3RTI5_GORGO_9595 and tr_A0A2K5YXH5_A0A2K5YXH5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G3RTI5_G3RTI5_GORGO_9595 and tr_A0A2R9B5R6_A0A2R9B5R6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1N317_G1N317_MELGA_9103 and tr_A0A226NJL4_A0A226NJL4_CALSU_9009 are exactly identical!
WARNING: Sequences tr_Q29B30_Q29B30_DROPS_46245 and tr_B4GZ59_B4GZ59_DROPE_7234 are exactly identical!
WARNING: Sequences tr_F7DIQ2_F7DIQ2_ORNAN_9258 and tr_A0A093G6V4_A0A093G6V4_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_F7DIQ2_F7DIQ2_ORNAN_9258 and tr_A0A091I980_A0A091I980_CALAN_9244 are exactly identical!
WARNING: Sequences tr_F6SBZ0_F6SBZ0_MONDO_13616 and tr_G3VL44_G3VL44_SARHA_9305 are exactly identical!
WARNING: Sequences tr_W5PQQ5_W5PQQ5_SHEEP_9940 and tr_E1BCR2_E1BCR2_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5PQQ5_W5PQQ5_SHEEP_9940 and tr_L5JYL9_L5JYL9_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_W5PQQ5_W5PQQ5_SHEEP_9940 and tr_A0A2U4C469_A0A2U4C469_TURTR_9739 are exactly identical!
WARNING: Sequences tr_W5PQQ5_W5PQQ5_SHEEP_9940 and tr_A0A2Y9Q763_A0A2Y9Q763_DELLE_9749 are exactly identical!
WARNING: Sequences tr_W5PQQ5_W5PQQ5_SHEEP_9940 and tr_A0A2Y9T6J3_A0A2Y9T6J3_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_W5PQQ5_W5PQQ5_SHEEP_9940 and tr_A0A384ADB0_A0A384ADB0_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A3B5Q3B3_A0A3B5Q3B3_XIPMA_8083 and tr_A0A087Y1B0_A0A087Y1B0_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A088A701_A0A088A701_APIME_7460 and tr_E2BN87_E2BN87_HARSA_610380 are exactly identical!
WARNING: Sequences tr_A0A088A701_A0A088A701_APIME_7460 and tr_A0A0L7RJ18_A0A0L7RJ18_9HYME_597456 are exactly identical!
WARNING: Sequences tr_A0A088A701_A0A088A701_APIME_7460 and tr_A0A2A3E2V4_A0A2A3E2V4_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NAW6_A0A158NAW6_ATTCE_12957 and tr_F4W6V7_F4W6V7_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A158NAW6_A0A158NAW6_ATTCE_12957 and tr_A0A195DQI3_A0A195DQI3_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NAW6_A0A158NAW6_ATTCE_12957 and tr_A0A151I5Q8_A0A151I5Q8_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NAW6_A0A158NAW6_ATTCE_12957 and tr_A0A195EWL9_A0A195EWL9_9HYME_34720 are exactly identical!
WARNING: Sequences tr_I3KWU9_I3KWU9_ORENI_8128 and tr_A0A2U9BH62_A0A2U9BH62_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_J3LAT5_J3LAT5_ORYBR_4533 and tr_A0A0E0G2W0_A0A0E0G2W0_ORYNI_4536 are exactly identical!
WARNING: Sequences tr_J3LAT5_J3LAT5_ORYBR_4533 and tr_B8ADW3_B8ADW3_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_J3LAT5_J3LAT5_ORYBR_4533 and tr_I1NYG5_I1NYG5_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_J3LAT5_J3LAT5_ORYBR_4533 and tr_A0A0E0CHH3_A0A0E0CHH3_9ORYZ_40149 are exactly identical!
WARNING: Sequences tr_J3LAT5_J3LAT5_ORYBR_4533 and tr_A0A0E0NBG6_A0A0E0NBG6_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_J3LAT5_J3LAT5_ORYBR_4533 and tr_A0A0D3F298_A0A0D3F298_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_J3LAT5_J3LAT5_ORYBR_4533 and tr_A0A0D9YP31_A0A0D9YP31_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_J3LAT5_J3LAT5_ORYBR_4533 and tr_A0A0D9VDL0_A0A0D9VDL0_9ORYZ_77586 are exactly identical!
WARNING: Sequences tr_J3LAT5_J3LAT5_ORYBR_4533 and tr_Q0E2W4_Q0E2W4_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_A0A1P8BD97_A0A1P8BD97_ARATH_3702 and tr_D7M401_D7M401_ARALL_81972 are exactly identical!
WARNING: Sequences tr_F4ISL5_F4ISL5_ARATH_3702 and tr_M4EZM2_M4EZM2_BRARP_51351 are exactly identical!
WARNING: Sequences tr_F4ISL5_F4ISL5_ARATH_3702 and tr_A0A078HD17_A0A078HD17_BRANA_3708 are exactly identical!
WARNING: Sequences tr_F4ISL5_F4ISL5_ARATH_3702 and tr_A0A0D3C236_A0A0D3C236_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_F4JXV3_F4JXV3_ARATH_3702 and tr_R0H5E1_R0H5E1_9BRAS_81985 are exactly identical!
WARNING: Sequences tr_F7GNS3_F7GNS3_MACMU_9544 and tr_G7NWX3_G7NWX3_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7GNS3_F7GNS3_MACMU_9544 and tr_A0A2I3N227_A0A2I3N227_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7GNS3_F7GNS3_MACMU_9544 and tr_A0A0D9S7Y3_A0A0D9S7Y3_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F7GNS3_F7GNS3_MACMU_9544 and tr_A0A2K5P0V9_A0A2K5P0V9_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7GNS3_F7GNS3_MACMU_9544 and tr_A0A2K6B8Y4_A0A2K6B8Y4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7GNS3_F7GNS3_MACMU_9544 and tr_A0A2K5XK98_A0A2K5XK98_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7H0T5_F7H0T5_MACMU_9544 and tr_G8F484_G8F484_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7H0T5_F7H0T5_MACMU_9544 and tr_A0A096MVY7_A0A096MVY7_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7H0T5_F7H0T5_MACMU_9544 and tr_A0A093I0W0_A0A093I0W0_STRCA_441894 are exactly identical!
WARNING: Sequences tr_F7H0T5_F7H0T5_MACMU_9544 and tr_A0A099ZI33_A0A099ZI33_TINGU_94827 are exactly identical!
WARNING: Sequences tr_F7H0T5_F7H0T5_MACMU_9544 and tr_A0A3Q0DCR7_A0A3Q0DCR7_MESAU_10036 are exactly identical!
WARNING: Sequences tr_F7H0T5_F7H0T5_MACMU_9544 and tr_A0A2K5NAZ2_A0A2K5NAZ2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7H0T5_F7H0T5_MACMU_9544 and tr_A0A2K6D6S6_A0A2K6D6S6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7H0T5_F7H0T5_MACMU_9544 and tr_A0A2K5ZPI8_A0A2K5ZPI8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G5BZQ9_G5BZQ9_HETGA_10181 and tr_H0ZRB1_H0ZRB1_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_G5BZQ9_G5BZQ9_HETGA_10181 and tr_A0A091E0A9_A0A091E0A9_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G5BZQ9_G5BZQ9_HETGA_10181 and tr_A0A093Q3H1_A0A093Q3H1_9PASS_328815 are exactly identical!
WARNING: Sequences tr_G5BZQ9_G5BZQ9_HETGA_10181 and tr_A0A218UTZ2_A0A218UTZ2_9PASE_299123 are exactly identical!
WARNING: Sequences tr_M5VSR9_M5VSR9_PRUPE_3760 and tr_A0A2R6Q2S3_A0A2R6Q2S3_ACTCH_1590841 are exactly identical!
WARNING: Sequences tr_W4XGP3_W4XGP3_STRPU_7668 and tr_W4YMC7_W4YMC7_STRPU_7668 are exactly identical!
WARNING: Sequences tr_K7FC12_K7FC12_PELSI_13735 and tr_H0ZB71_H0ZB71_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_K7FC12_K7FC12_PELSI_13735 and tr_U3K7D6_U3K7D6_FICAL_59894 are exactly identical!
WARNING: Sequences tr_K7FC12_K7FC12_PELSI_13735 and tr_A0A091E7V6_A0A091E7V6_CORBR_85066 are exactly identical!
WARNING: Sequences tr_K7FC12_K7FC12_PELSI_13735 and tr_A0A091K8B2_A0A091K8B2_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_K7FC12_K7FC12_PELSI_13735 and tr_A0A087QRR4_A0A087QRR4_APTFO_9233 are exactly identical!
WARNING: Sequences tr_K7FC12_K7FC12_PELSI_13735 and tr_A0A093H0M4_A0A093H0M4_STRCA_441894 are exactly identical!
WARNING: Sequences tr_K7FC12_K7FC12_PELSI_13735 and tr_A0A099Z5G7_A0A099Z5G7_TINGU_94827 are exactly identical!
WARNING: Sequences tr_K7FC12_K7FC12_PELSI_13735 and tr_A0A091G7A9_A0A091G7A9_9AVES_55661 are exactly identical!
WARNING: Sequences tr_K7FC12_K7FC12_PELSI_13735 and tr_A0A0A0B1K4_A0A0A0B1K4_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_K7FC12_K7FC12_PELSI_13735 and tr_A0A2I0M5T7_A0A2I0M5T7_COLLI_8932 are exactly identical!
WARNING: Sequences tr_K7FC12_K7FC12_PELSI_13735 and tr_A0A1V4KKB7_A0A1V4KKB7_PATFA_372326 are exactly identical!
WARNING: Sequences tr_K7FC12_K7FC12_PELSI_13735 and tr_A0A218UZE1_A0A218UZE1_9PASE_299123 are exactly identical!
WARNING: Sequences tr_K7G4A0_K7G4A0_PELSI_13735 and tr_A0A151PDP8_A0A151PDP8_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_K7G4A0_K7G4A0_PELSI_13735 and tr_A0A1U7S4S8_A0A1U7S4S8_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_G3TBS6_G3TBS6_LOXAF_9785 and tr_A0A2Y9R866_A0A2Y9R866_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_A0A0E0E3F3_A0A0E0E3F3_9ORYZ_40149 and tr_A0A0E0PZR5_A0A0E0PZR5_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0E3F3_A0A0E0E3F3_9ORYZ_40149 and tr_A0A0D3GIB8_A0A0D3GIB8_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_A0A0E0E3F3_A0A0E0E3F3_9ORYZ_40149 and tr_A0A0E0ABG9_A0A0E0ABG9_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0E0E3F3_A0A0E0E3F3_9ORYZ_40149 and tr_A0A0E0LD60_A0A0E0LD60_ORYPU_4537 are exactly identical!
WARNING: Sequences tr_F7D5S8_F7D5S8_XENTR_8364 and tr_A0A1L8G3R4_A0A1L8G3R4_XENLA_8355 are exactly identical!
WARNING: Sequences tr_F7D5S8_F7D5S8_XENTR_8364 and tr_A0A1L8GA10_A0A1L8GA10_XENLA_8355 are exactly identical!
WARNING: Sequences tr_B4LY97_B4LY97_DROVI_7244 and tr_B4K874_B4K874_DROMO_7230 are exactly identical!
WARNING: Sequences tr_M4CXL6_M4CXL6_BRARP_51351 and tr_A0A0D3EG79_A0A0D3EG79_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_S2K6N8_S2K6N8_MUCC1_1220926 and tr_A0A0C9M7I3_A0A0C9M7I3_9FUNG_91626 are exactly identical!
WARNING: Sequences tr_A0A067DCZ6_A0A067DCZ6_CITSI_2711 and tr_A0A2H5PFE0_A0A2H5PFE0_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A067F9E4_A0A067F9E4_CITSI_2711 and tr_V4VSE5_V4VSE5_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067FL87_A0A067FL87_CITSI_2711 and tr_V4TRE4_V4TRE4_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067FL87_A0A067FL87_CITSI_2711 and tr_A0A2H5NXD5_A0A2H5NXD5_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A067GJ08_A0A067GJ08_CITSI_2711 and tr_V4UN41_V4UN41_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067GJ08_A0A067GJ08_CITSI_2711 and tr_A0A2H5Q6C2_A0A2H5Q6C2_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A067GJ08_A0A067GJ08_CITSI_2711 and tr_A0A2H5Q6L8_A0A2H5Q6L8_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A0A0LDR1_A0A0A0LDR1_CUCSA_3659 and tr_A0A1S4E5N9_A0A1S4E5N9_CUCME_3656 are exactly identical!
WARNING: Sequences tr_A0A0A0LDR1_A0A0A0LDR1_CUCSA_3659 and tr_A0A1U7ZJR9_A0A1U7ZJR9_NELNU_4432 are exactly identical!
WARNING: Sequences tr_A0A0A0LDR1_A0A0A0LDR1_CUCSA_3659 and tr_A0A2P6Q1S1_A0A2P6Q1S1_ROSCH_74649 are exactly identical!
WARNING: Sequences tr_A0A0D2PJB4_A0A0D2PJB4_GOSRA_29730 and tr_A0A1U8JPG0_A0A1U8JPG0_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2PJB4_A0A0D2PJB4_GOSRA_29730 and tr_A0A1U8N1D4_A0A1U8N1D4_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0A1MZP5_A0A0A1MZP5_9FUNG_58291 and tr_A0A2G4T3G4_A0A2G4T3G4_9FUNG_1340429 are exactly identical!
WARNING: Sequences tr_A0A0A1P024_A0A0A1P024_9FUNG_58291 and tr_A0A367J1F2_A0A367J1F2_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A151NYX1_A0A151NYX1_ALLMI_8496 and tr_A0A1U7RKF9_A0A1U7RKF9_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A194QTS0_A0A194QTS0_PAPMA_76193 and tr_A0A194PQF3_A0A194PQF3_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A091WB28_A0A091WB28_OPIHO_30419 and tr_A0A1V4KKE3_A0A1V4KKE3_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A1S4BNM3_A0A1S4BNM3_TOBAC_4097 and tr_A0A1J6IKT9_A0A1J6IKT9_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S4BNM3_A0A1S4BNM3_TOBAC_4097 and tr_A0A1U7WEA6_A0A1U7WEA6_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3IPM4_A0A1S3IPM4_LINUN_7574 and tr_A0A1S3JU59_A0A1S3JU59_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3KLG7_A0A1S3KLG7_SALSA_8030 and tr_A0A1S3N5S9_A0A1S3N5S9_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3KLG7_A0A1S3KLG7_SALSA_8030 and tr_A0A1S3QXH9_A0A1S3QXH9_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3KLG7_A0A1S3KLG7_SALSA_8030 and tr_A0A1S3T5X5_A0A1S3T5X5_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3KLG7_A0A1S3KLG7_SALSA_8030 and tr_A0A060XN96_A0A060XN96_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3LCX8_A0A1S3LCX8_SALSA_8030 and tr_A0A060X064_A0A060X064_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A0M3QXW2_A0A0M3QXW2_DROBS_30019 and tr_A0A0M4F530_A0A0M4F530_DROBS_30019 are exactly identical!
WARNING: Sequences tr_A0A2G2YXH4_A0A2G2YXH4_CAPAN_4072 and tr_A0A2G3BSK5_A0A2G3BSK5_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2G8JIM3_A0A2G8JIM3_STIJA_307972 and tr_A0A2G8JUF7_A0A2G8JUF7_STIJA_307972 are exactly identical!
WARNING: Sequences tr_A0A2P5G204_A0A2P5G204_TREOI_63057 and tr_A0A2P5BWD6_A0A2P5BWD6_PARAD_3476 are exactly identical!
WARNING: Sequences tr_A0A2U4BJ34_A0A2U4BJ34_TURTR_9739 and tr_A0A2Y9N8X7_A0A2Y9N8X7_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4BJ34_A0A2U4BJ34_TURTR_9739 and tr_A0A383Z6C1_A0A383Z6C1_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 195

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMY3/3_mltree/Q6ZMY3.raxml.reduced.phy

Alignment comprises 1 partitions and 49 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 49 / 49
Gaps: 0.93 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMY3/3_mltree/Q6ZMY3.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 486 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 49 / 3920
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -34205.232047] Initial branch length optimization
[00:00:00 -27439.536457] Model parameter optimization (eps = 10.000000)
[00:00:09 -27289.017722] AUTODETECT spr round 1 (radius: 5)
[00:00:27 -17747.714340] AUTODETECT spr round 2 (radius: 10)
[00:00:47 -12927.089519] AUTODETECT spr round 3 (radius: 15)
[00:01:10 -10859.113794] AUTODETECT spr round 4 (radius: 20)
[00:01:33 -10199.025682] AUTODETECT spr round 5 (radius: 25)
[00:02:00 -9684.631496] SPR radius for FAST iterations: 25 (autodetect)
[00:02:00 -9684.631496] Model parameter optimization (eps = 3.000000)
[00:02:09 -9635.012392] FAST spr round 1 (radius: 25)
[00:02:29 -8385.291433] FAST spr round 2 (radius: 25)
[00:02:48 -8285.029953] FAST spr round 3 (radius: 25)
[00:03:06 -8273.775056] FAST spr round 4 (radius: 25)
[00:03:22 -8273.416288] FAST spr round 5 (radius: 25)
[00:03:37 -8273.132363] FAST spr round 6 (radius: 25)
[00:03:52 -8273.132240] Model parameter optimization (eps = 1.000000)
[00:03:57 -8269.462353] SLOW spr round 1 (radius: 5)
[00:04:16 -8264.777905] SLOW spr round 2 (radius: 5)
[00:04:35 -8263.688748] SLOW spr round 3 (radius: 5)
[00:04:54 -8263.688274] SLOW spr round 4 (radius: 10)
[00:05:15 -8257.546699] SLOW spr round 5 (radius: 5)
[00:05:40 -8255.636121] SLOW spr round 6 (radius: 5)
[00:06:02 -8255.618621] SLOW spr round 7 (radius: 10)
[00:06:22 -8251.181961] SLOW spr round 8 (radius: 5)
[00:06:47 -8251.133402] SLOW spr round 9 (radius: 10)
[00:07:09 -8247.227867] SLOW spr round 10 (radius: 5)
[00:07:33 -8246.122603] SLOW spr round 11 (radius: 5)
[00:07:54 -8245.730427] SLOW spr round 12 (radius: 5)
[00:08:14 -8245.728993] SLOW spr round 13 (radius: 10)
[00:08:33 -8245.728944] SLOW spr round 14 (radius: 15)
[00:09:06 -8236.989388] SLOW spr round 15 (radius: 5)
[00:09:32 -8233.293026] SLOW spr round 16 (radius: 5)
[00:09:54 -8233.289750] SLOW spr round 17 (radius: 10)
[00:10:15 -8233.289246] SLOW spr round 18 (radius: 15)
[00:10:44 -8233.289164] SLOW spr round 19 (radius: 20)
[00:11:24 -8233.289151] SLOW spr round 20 (radius: 25)
[00:12:09 -8232.962813] SLOW spr round 21 (radius: 5)
[00:12:35 -8232.962802] SLOW spr round 22 (radius: 10)
[00:12:59 -8232.962802] SLOW spr round 23 (radius: 15)
[00:13:28 -8232.962802] SLOW spr round 24 (radius: 20)
[00:14:08 -8232.962802] SLOW spr round 25 (radius: 25)
[00:14:53 -8232.962802] Model parameter optimization (eps = 0.100000)

[00:14:57] ML tree search #1, logLikelihood: -8232.003114

[00:14:57 -33596.288449] Initial branch length optimization
[00:14:58 -26984.260220] Model parameter optimization (eps = 10.000000)
[00:15:04 -26844.410627] AUTODETECT spr round 1 (radius: 5)
[00:15:22 -17627.025275] AUTODETECT spr round 2 (radius: 10)
[00:15:42 -13002.206534] AUTODETECT spr round 3 (radius: 15)
[00:16:04 -10903.952363] AUTODETECT spr round 4 (radius: 20)
[00:16:33 -9808.280966] AUTODETECT spr round 5 (radius: 25)
[00:17:03 -9767.616053] SPR radius for FAST iterations: 25 (autodetect)
[00:17:03 -9767.616053] Model parameter optimization (eps = 3.000000)
[00:17:11 -9722.535245] FAST spr round 1 (radius: 25)
[00:17:30 -8369.845587] FAST spr round 2 (radius: 25)
[00:17:48 -8271.498243] FAST spr round 3 (radius: 25)
[00:18:05 -8264.579334] FAST spr round 4 (radius: 25)
[00:18:21 -8264.473191] FAST spr round 5 (radius: 25)
[00:18:37 -8264.472985] Model parameter optimization (eps = 1.000000)
[00:18:42 -8262.798171] SLOW spr round 1 (radius: 5)
[00:19:01 -8260.468191] SLOW spr round 2 (radius: 5)
[00:19:20 -8260.467440] SLOW spr round 3 (radius: 10)
[00:19:40 -8260.467378] SLOW spr round 4 (radius: 15)
[00:20:09 -8247.924584] SLOW spr round 5 (radius: 5)
[00:20:35 -8240.348729] SLOW spr round 6 (radius: 5)
[00:20:58 -8236.517252] SLOW spr round 7 (radius: 5)
[00:21:19 -8236.029607] SLOW spr round 8 (radius: 5)
[00:21:38 -8236.028715] SLOW spr round 9 (radius: 10)
[00:21:58 -8236.028638] SLOW spr round 10 (radius: 15)
[00:22:27 -8233.800972] SLOW spr round 11 (radius: 5)
[00:22:53 -8233.485149] SLOW spr round 12 (radius: 5)
[00:23:15 -8233.485134] SLOW spr round 13 (radius: 10)
[00:23:35 -8233.043488] SLOW spr round 14 (radius: 5)
[00:23:59 -8233.043477] SLOW spr round 15 (radius: 10)
[00:24:20 -8233.043477] SLOW spr round 16 (radius: 15)
[00:24:48 -8233.043477] SLOW spr round 17 (radius: 20)
[00:25:24 -8233.043477] SLOW spr round 18 (radius: 25)
[00:26:08 -8232.716104] SLOW spr round 19 (radius: 5)
[00:26:34 -8232.716097] SLOW spr round 20 (radius: 10)
[00:26:58 -8232.716097] SLOW spr round 21 (radius: 15)
[00:27:25 -8232.716096] SLOW spr round 22 (radius: 20)
[00:28:02 -8232.716096] SLOW spr round 23 (radius: 25)
[00:28:45 -8232.716096] Model parameter optimization (eps = 0.100000)

[00:28:50] ML tree search #2, logLikelihood: -8231.726320

[00:28:50 -33902.186384] Initial branch length optimization
[00:28:51 -27045.831096] Model parameter optimization (eps = 10.000000)
[00:28:58 -26859.614987] AUTODETECT spr round 1 (radius: 5)
[00:29:16 -17972.368492] AUTODETECT spr round 2 (radius: 10)
[00:29:36 -14343.017797] AUTODETECT spr round 3 (radius: 15)
[00:30:02 -11141.748942] AUTODETECT spr round 4 (radius: 20)
[00:30:32 -9869.476996] AUTODETECT spr round 5 (radius: 25)
[00:31:01 -9843.579075] SPR radius for FAST iterations: 25 (autodetect)
[00:31:01 -9843.579075] Model parameter optimization (eps = 3.000000)
[00:31:09 -9807.250006] FAST spr round 1 (radius: 25)
[00:31:30 -8396.900134] FAST spr round 2 (radius: 25)
[00:31:49 -8307.890249] FAST spr round 3 (radius: 25)
[00:32:05 -8300.117404] FAST spr round 4 (radius: 25)
[00:32:22 -8293.444929] FAST spr round 5 (radius: 25)
[00:32:38 -8288.724501] FAST spr round 6 (radius: 25)
[00:32:54 -8288.724086] Model parameter optimization (eps = 1.000000)
[00:32:59 -8286.890319] SLOW spr round 1 (radius: 5)
[00:33:19 -8281.999360] SLOW spr round 2 (radius: 5)
[00:33:38 -8281.997202] SLOW spr round 3 (radius: 10)
[00:33:58 -8279.263620] SLOW spr round 4 (radius: 5)
[00:34:23 -8276.711258] SLOW spr round 5 (radius: 5)
[00:34:46 -8274.960347] SLOW spr round 6 (radius: 5)
[00:35:06 -8274.653134] SLOW spr round 7 (radius: 5)
[00:35:25 -8274.652410] SLOW spr round 8 (radius: 10)
[00:35:44 -8274.652373] SLOW spr round 9 (radius: 15)
[00:36:16 -8248.843361] SLOW spr round 10 (radius: 5)
[00:36:42 -8248.045424] SLOW spr round 11 (radius: 5)
[00:37:04 -8248.045197] SLOW spr round 12 (radius: 10)
[00:37:24 -8246.822091] SLOW spr round 13 (radius: 5)
[00:37:48 -8246.749173] SLOW spr round 14 (radius: 10)
[00:38:10 -8246.747571] SLOW spr round 15 (radius: 15)
[00:38:39 -8246.746787] SLOW spr round 16 (radius: 20)
[00:39:15 -8246.746393] SLOW spr round 17 (radius: 25)
[00:39:55 -8246.746192] Model parameter optimization (eps = 0.100000)

[00:40:01] ML tree search #3, logLikelihood: -8244.087145

[00:40:01 -33789.554951] Initial branch length optimization
[00:40:01 -27306.071089] Model parameter optimization (eps = 10.000000)
[00:40:11 -27116.563540] AUTODETECT spr round 1 (radius: 5)
[00:40:29 -17828.757175] AUTODETECT spr round 2 (radius: 10)
[00:40:50 -13558.845626] AUTODETECT spr round 3 (radius: 15)
[00:41:13 -11346.589272] AUTODETECT spr round 4 (radius: 20)
[00:41:37 -10203.994826] AUTODETECT spr round 5 (radius: 25)
[00:42:07 -9844.722796] SPR radius for FAST iterations: 25 (autodetect)
[00:42:07 -9844.722796] Model parameter optimization (eps = 3.000000)
[00:42:14 -9781.095123] FAST spr round 1 (radius: 25)
[00:42:33 -8584.461103] FAST spr round 2 (radius: 25)
[00:42:51 -8413.063461] FAST spr round 3 (radius: 25)
[00:43:08 -8396.928789] FAST spr round 4 (radius: 25)
[00:43:24 -8393.377158] FAST spr round 5 (radius: 25)
[00:43:40 -8387.684443] FAST spr round 6 (radius: 25)
[00:43:56 -8387.683903] Model parameter optimization (eps = 1.000000)
[00:44:02 -8386.035692] SLOW spr round 1 (radius: 5)
[00:44:22 -8384.119399] SLOW spr round 2 (radius: 5)
[00:44:40 -8381.956127] SLOW spr round 3 (radius: 5)
[00:44:59 -8381.956070] SLOW spr round 4 (radius: 10)
[00:45:18 -8381.209220] SLOW spr round 5 (radius: 5)
[00:45:43 -8380.943679] SLOW spr round 6 (radius: 5)
[00:46:04 -8380.943157] SLOW spr round 7 (radius: 10)
[00:46:24 -8380.509445] SLOW spr round 8 (radius: 5)
[00:46:48 -8380.509213] SLOW spr round 9 (radius: 10)
[00:47:10 -8380.509058] SLOW spr round 10 (radius: 15)
[00:47:38 -8380.508952] SLOW spr round 11 (radius: 20)
[00:48:15 -8349.548709] SLOW spr round 12 (radius: 5)
[00:48:43 -8266.868397] SLOW spr round 13 (radius: 5)
[00:49:06 -8266.162938] SLOW spr round 14 (radius: 5)
[00:49:26 -8266.005584] SLOW spr round 15 (radius: 5)
[00:49:45 -8266.005538] SLOW spr round 16 (radius: 10)
[00:50:05 -8266.005498] SLOW spr round 17 (radius: 15)
[00:50:33 -8265.061268] SLOW spr round 18 (radius: 5)
[00:50:59 -8265.061239] SLOW spr round 19 (radius: 10)
[00:51:21 -8265.061215] SLOW spr round 20 (radius: 15)
[00:51:48 -8265.061195] SLOW spr round 21 (radius: 20)
[00:52:23 -8265.061178] SLOW spr round 22 (radius: 25)
[00:53:04 -8257.878679] SLOW spr round 23 (radius: 5)
[00:53:32 -8247.149771] SLOW spr round 24 (radius: 5)
[00:53:55 -8244.861074] SLOW spr round 25 (radius: 5)
[00:54:15 -8244.860902] SLOW spr round 26 (radius: 10)
[00:54:35 -8240.511815] SLOW spr round 27 (radius: 5)
[00:55:01 -8240.428326] SLOW spr round 28 (radius: 10)
[00:55:22 -8240.428259] SLOW spr round 29 (radius: 15)
[00:55:49 -8240.428241] SLOW spr round 30 (radius: 20)
[00:56:24 -8238.993050] SLOW spr round 31 (radius: 5)
[00:56:51 -8238.753416] SLOW spr round 32 (radius: 5)
[00:57:14 -8238.753295] SLOW spr round 33 (radius: 10)
[00:57:34 -8238.753288] SLOW spr round 34 (radius: 15)
[00:58:03 -8238.753287] SLOW spr round 35 (radius: 20)
[00:58:38 -8238.753287] SLOW spr round 36 (radius: 25)
[00:59:20 -8238.753287] Model parameter optimization (eps = 0.100000)

[00:59:25] ML tree search #4, logLikelihood: -8237.688751

[00:59:25 -33995.586309] Initial branch length optimization
[00:59:25 -27551.412629] Model parameter optimization (eps = 10.000000)
[00:59:34 -27385.945810] AUTODETECT spr round 1 (radius: 5)
[00:59:52 -17556.951297] AUTODETECT spr round 2 (radius: 10)
[01:00:12 -13000.026671] AUTODETECT spr round 3 (radius: 15)
[01:00:36 -10687.278043] AUTODETECT spr round 4 (radius: 20)
[01:01:01 -10201.998878] AUTODETECT spr round 5 (radius: 25)
[01:01:33 -9850.120231] SPR radius for FAST iterations: 25 (autodetect)
[01:01:33 -9850.120231] Model parameter optimization (eps = 3.000000)
[01:01:41 -9817.302339] FAST spr round 1 (radius: 25)
[01:02:02 -8400.985665] FAST spr round 2 (radius: 25)
[01:02:21 -8271.405905] FAST spr round 3 (radius: 25)
[01:02:38 -8267.257098] FAST spr round 4 (radius: 25)
[01:02:53 -8267.254422] Model parameter optimization (eps = 1.000000)
[01:02:59 -8265.630858] SLOW spr round 1 (radius: 5)
[01:03:18 -8257.772987] SLOW spr round 2 (radius: 5)
[01:03:38 -8257.504898] SLOW spr round 3 (radius: 5)
[01:03:56 -8257.501958] SLOW spr round 4 (radius: 10)
[01:04:17 -8250.394501] SLOW spr round 5 (radius: 5)
[01:04:42 -8246.228547] SLOW spr round 6 (radius: 5)
[01:05:05 -8245.131409] SLOW spr round 7 (radius: 5)
[01:05:24 -8245.129742] SLOW spr round 8 (radius: 10)
[01:05:44 -8241.357570] SLOW spr round 9 (radius: 5)
[01:06:09 -8241.344537] SLOW spr round 10 (radius: 10)
[01:06:31 -8241.344209] SLOW spr round 11 (radius: 15)
[01:06:59 -8241.326355] SLOW spr round 12 (radius: 20)
[01:07:34 -8241.326351] SLOW spr round 13 (radius: 25)
[01:08:16 -8241.326350] Model parameter optimization (eps = 0.100000)

[01:08:20] ML tree search #5, logLikelihood: -8240.355869

[01:08:20 -34475.171605] Initial branch length optimization
[01:08:21 -27427.968849] Model parameter optimization (eps = 10.000000)
[01:08:28 -27257.745265] AUTODETECT spr round 1 (radius: 5)
[01:08:47 -18275.258530] AUTODETECT spr round 2 (radius: 10)
[01:09:08 -13374.659621] AUTODETECT spr round 3 (radius: 15)
[01:09:32 -10954.984132] AUTODETECT spr round 4 (radius: 20)
[01:10:00 -9940.263140] AUTODETECT spr round 5 (radius: 25)
[01:10:26 -9808.540549] SPR radius for FAST iterations: 25 (autodetect)
[01:10:26 -9808.540549] Model parameter optimization (eps = 3.000000)
[01:10:37 -9754.783556] FAST spr round 1 (radius: 25)
[01:10:57 -8526.519899] FAST spr round 2 (radius: 25)
[01:11:15 -8381.790665] FAST spr round 3 (radius: 25)
[01:11:31 -8380.167504] FAST spr round 4 (radius: 25)
[01:11:47 -8380.164923] Model parameter optimization (eps = 1.000000)
[01:11:54 -8378.306874] SLOW spr round 1 (radius: 5)
[01:12:14 -8371.458200] SLOW spr round 2 (radius: 5)
[01:12:34 -8362.087461] SLOW spr round 3 (radius: 5)
[01:12:53 -8362.008329] SLOW spr round 4 (radius: 10)
[01:13:13 -8361.171763] SLOW spr round 5 (radius: 5)
[01:13:37 -8361.171726] SLOW spr round 6 (radius: 10)
[01:13:59 -8361.171726] SLOW spr round 7 (radius: 15)
[01:14:29 -8339.547291] SLOW spr round 8 (radius: 5)
[01:14:56 -8324.477866] SLOW spr round 9 (radius: 5)
[01:15:18 -8323.892150] SLOW spr round 10 (radius: 5)
[01:15:38 -8323.892124] SLOW spr round 11 (radius: 10)
[01:15:58 -8322.878343] SLOW spr round 12 (radius: 5)
[01:16:23 -8320.611844] SLOW spr round 13 (radius: 5)
[01:16:46 -8318.989073] SLOW spr round 14 (radius: 5)
[01:17:06 -8316.705755] SLOW spr round 15 (radius: 5)
[01:17:24 -8315.317305] SLOW spr round 16 (radius: 5)
[01:17:43 -8313.195757] SLOW spr round 17 (radius: 5)
[01:18:01 -8313.113848] SLOW spr round 18 (radius: 10)
[01:18:21 -8313.113636] SLOW spr round 19 (radius: 15)
[01:18:52 -8269.834518] SLOW spr round 20 (radius: 5)
[01:19:19 -8252.232349] SLOW spr round 21 (radius: 5)
[01:19:41 -8252.231897] SLOW spr round 22 (radius: 10)
[01:20:01 -8250.448577] SLOW spr round 23 (radius: 5)
[01:20:25 -8249.080485] SLOW spr round 24 (radius: 5)
[01:20:46 -8249.080367] SLOW spr round 25 (radius: 10)
[01:21:06 -8249.080367] SLOW spr round 26 (radius: 15)
[01:21:35 -8249.080367] SLOW spr round 27 (radius: 20)
[01:22:09 -8247.643529] SLOW spr round 28 (radius: 5)
[01:22:35 -8247.643151] SLOW spr round 29 (radius: 10)
[01:22:59 -8247.643146] SLOW spr round 30 (radius: 15)
[01:23:26 -8247.643146] SLOW spr round 31 (radius: 20)
[01:24:01 -8247.643146] SLOW spr round 32 (radius: 25)
[01:24:41 -8247.643146] Model parameter optimization (eps = 0.100000)

[01:24:45] ML tree search #6, logLikelihood: -8247.244920

[01:24:45 -33888.114503] Initial branch length optimization
[01:24:46 -27257.902348] Model parameter optimization (eps = 10.000000)
[01:24:54 -27089.548829] AUTODETECT spr round 1 (radius: 5)
[01:25:12 -17560.366323] AUTODETECT spr round 2 (radius: 10)
[01:25:33 -13580.729932] AUTODETECT spr round 3 (radius: 15)
[01:25:58 -10812.691075] AUTODETECT spr round 4 (radius: 20)
[01:26:24 -10190.324399] AUTODETECT spr round 5 (radius: 25)
[01:26:52 -9944.145785] SPR radius for FAST iterations: 25 (autodetect)
[01:26:52 -9944.145785] Model parameter optimization (eps = 3.000000)
[01:26:59 -9874.896193] FAST spr round 1 (radius: 25)
[01:27:21 -8373.878073] FAST spr round 2 (radius: 25)
[01:27:40 -8268.788917] FAST spr round 3 (radius: 25)
[01:27:57 -8259.536220] FAST spr round 4 (radius: 25)
[01:28:13 -8257.344260] FAST spr round 5 (radius: 25)
[01:28:29 -8257.343538] Model parameter optimization (eps = 1.000000)
[01:28:38 -8254.617183] SLOW spr round 1 (radius: 5)
[01:28:57 -8252.589945] SLOW spr round 2 (radius: 5)
[01:29:17 -8252.587334] SLOW spr round 3 (radius: 10)
[01:29:38 -8247.905948] SLOW spr round 4 (radius: 5)
[01:30:03 -8247.723404] SLOW spr round 5 (radius: 5)
[01:30:24 -8247.723162] SLOW spr round 6 (radius: 10)
[01:30:45 -8246.065773] SLOW spr round 7 (radius: 5)
[01:31:10 -8246.022752] SLOW spr round 8 (radius: 10)
[01:31:32 -8246.022560] SLOW spr round 9 (radius: 15)
[01:32:03 -8241.991026] SLOW spr round 10 (radius: 5)
[01:32:29 -8239.999312] SLOW spr round 11 (radius: 5)
[01:32:51 -8239.999307] SLOW spr round 12 (radius: 10)
[01:33:12 -8239.685045] SLOW spr round 13 (radius: 5)
[01:33:36 -8239.685045] SLOW spr round 14 (radius: 10)
[01:33:58 -8239.685045] SLOW spr round 15 (radius: 15)
[01:34:28 -8239.685045] SLOW spr round 16 (radius: 20)
[01:35:07 -8239.360541] SLOW spr round 17 (radius: 5)
[01:35:33 -8239.360541] SLOW spr round 18 (radius: 10)
[01:35:57 -8239.360541] SLOW spr round 19 (radius: 15)
[01:36:27 -8239.360541] SLOW spr round 20 (radius: 20)
[01:37:07 -8239.360541] SLOW spr round 21 (radius: 25)
[01:37:50 -8239.360541] Model parameter optimization (eps = 0.100000)

[01:37:56] ML tree search #7, logLikelihood: -8238.682733

[01:37:56 -33753.970206] Initial branch length optimization
[01:37:56 -27093.139053] Model parameter optimization (eps = 10.000000)
[01:38:05 -26953.045534] AUTODETECT spr round 1 (radius: 5)
[01:38:24 -17889.071664] AUTODETECT spr round 2 (radius: 10)
[01:38:44 -13242.530362] AUTODETECT spr round 3 (radius: 15)
[01:39:08 -11019.854687] AUTODETECT spr round 4 (radius: 20)
[01:39:32 -10562.487332] AUTODETECT spr round 5 (radius: 25)
[01:39:59 -10435.172647] SPR radius for FAST iterations: 25 (autodetect)
[01:39:59 -10435.172647] Model parameter optimization (eps = 3.000000)
[01:40:06 -10394.952669] FAST spr round 1 (radius: 25)
[01:40:26 -8971.845429] FAST spr round 2 (radius: 25)
[01:40:44 -8557.692536] FAST spr round 3 (radius: 25)
[01:41:01 -8451.657477] FAST spr round 4 (radius: 25)
[01:41:18 -8371.932571] FAST spr round 5 (radius: 25)
[01:41:34 -8367.226048] FAST spr round 6 (radius: 25)
[01:41:50 -8367.225817] Model parameter optimization (eps = 1.000000)
[01:41:57 -8357.082672] SLOW spr round 1 (radius: 5)
[01:42:16 -8356.635357] SLOW spr round 2 (radius: 5)
[01:42:35 -8356.635330] SLOW spr round 3 (radius: 10)
[01:42:54 -8356.635330] SLOW spr round 4 (radius: 15)
[01:43:23 -8319.738873] SLOW spr round 5 (radius: 5)
[01:43:49 -8311.745598] SLOW spr round 6 (radius: 5)
[01:44:12 -8311.733851] SLOW spr round 7 (radius: 10)
[01:44:32 -8306.695179] SLOW spr round 8 (radius: 5)
[01:44:57 -8306.407073] SLOW spr round 9 (radius: 5)
[01:45:18 -8306.406889] SLOW spr round 10 (radius: 10)
[01:45:38 -8306.406875] SLOW spr round 11 (radius: 15)
[01:46:07 -8247.140955] SLOW spr round 12 (radius: 5)
[01:46:33 -8243.555670] SLOW spr round 13 (radius: 5)
[01:46:56 -8242.984081] SLOW spr round 14 (radius: 5)
[01:47:16 -8242.983465] SLOW spr round 15 (radius: 10)
[01:47:35 -8242.983452] SLOW spr round 16 (radius: 15)
[01:48:04 -8242.983451] SLOW spr round 17 (radius: 20)
[01:48:41 -8242.983450] SLOW spr round 18 (radius: 25)
[01:49:24 -8242.983449] Model parameter optimization (eps = 0.100000)

[01:49:32] ML tree search #8, logLikelihood: -8241.516195

[01:49:32 -33620.776284] Initial branch length optimization
[01:49:32 -26863.519389] Model parameter optimization (eps = 10.000000)
[01:49:39 -26744.336624] AUTODETECT spr round 1 (radius: 5)
[01:49:57 -17539.475377] AUTODETECT spr round 2 (radius: 10)
[01:50:18 -12852.505306] AUTODETECT spr round 3 (radius: 15)
[01:50:42 -10609.872029] AUTODETECT spr round 4 (radius: 20)
[01:51:06 -9754.211592] AUTODETECT spr round 5 (radius: 25)
[01:51:33 -9659.464034] SPR radius for FAST iterations: 25 (autodetect)
[01:51:33 -9659.464034] Model parameter optimization (eps = 3.000000)
[01:51:42 -9615.704378] FAST spr round 1 (radius: 25)
[01:52:01 -8437.316679] FAST spr round 2 (radius: 25)
[01:52:18 -8309.682045] FAST spr round 3 (radius: 25)
[01:52:35 -8265.538824] FAST spr round 4 (radius: 25)
[01:52:51 -8261.351420] FAST spr round 5 (radius: 25)
[01:53:08 -8260.801685] FAST spr round 6 (radius: 25)
[01:53:23 -8260.801170] Model parameter optimization (eps = 1.000000)
[01:53:28 -8259.052505] SLOW spr round 1 (radius: 5)
[01:53:47 -8257.440621] SLOW spr round 2 (radius: 5)
[01:54:06 -8255.864076] SLOW spr round 3 (radius: 5)
[01:54:25 -8255.863824] SLOW spr round 4 (radius: 10)
[01:54:44 -8254.880330] SLOW spr round 5 (radius: 5)
[01:55:09 -8253.845711] SLOW spr round 6 (radius: 5)
[01:55:30 -8253.845681] SLOW spr round 7 (radius: 10)
[01:55:50 -8251.304761] SLOW spr round 8 (radius: 5)
[01:56:15 -8249.983723] SLOW spr round 9 (radius: 5)
[01:56:36 -8249.983696] SLOW spr round 10 (radius: 10)
[01:56:56 -8249.983691] SLOW spr round 11 (radius: 15)
[01:57:24 -8249.914363] SLOW spr round 12 (radius: 20)
[01:57:56 -8249.914363] SLOW spr round 13 (radius: 25)
[01:58:32 -8249.914363] Model parameter optimization (eps = 0.100000)

[01:58:34] ML tree search #9, logLikelihood: -8249.886722

[01:58:34 -34247.906732] Initial branch length optimization
[01:58:35 -27252.878675] Model parameter optimization (eps = 10.000000)
[01:58:42 -27119.779644] AUTODETECT spr round 1 (radius: 5)
[01:59:01 -17552.758505] AUTODETECT spr round 2 (radius: 10)
[01:59:21 -13165.494372] AUTODETECT spr round 3 (radius: 15)
[01:59:46 -10892.118071] AUTODETECT spr round 4 (radius: 20)
[02:00:13 -10237.798759] AUTODETECT spr round 5 (radius: 25)
[02:00:42 -9907.072348] SPR radius for FAST iterations: 25 (autodetect)
[02:00:42 -9907.072348] Model parameter optimization (eps = 3.000000)
[02:00:53 -9882.014847] FAST spr round 1 (radius: 25)
[02:01:12 -8469.115008] FAST spr round 2 (radius: 25)
[02:01:29 -8292.303223] FAST spr round 3 (radius: 25)
[02:01:47 -8265.965467] FAST spr round 4 (radius: 25)
[02:02:03 -8259.776765] FAST spr round 5 (radius: 25)
[02:02:18 -8259.776686] Model parameter optimization (eps = 1.000000)
[02:02:30 -8247.653142] SLOW spr round 1 (radius: 5)
[02:02:49 -8240.910087] SLOW spr round 2 (radius: 5)
[02:03:09 -8240.430072] SLOW spr round 3 (radius: 5)
[02:03:27 -8240.429936] SLOW spr round 4 (radius: 10)
[02:03:47 -8234.627938] SLOW spr round 5 (radius: 5)
[02:04:12 -8230.531661] SLOW spr round 6 (radius: 5)
[02:04:34 -8230.268854] SLOW spr round 7 (radius: 5)
[02:04:53 -8230.268631] SLOW spr round 8 (radius: 10)
[02:05:12 -8230.268617] SLOW spr round 9 (radius: 15)
[02:05:42 -8225.239340] SLOW spr round 10 (radius: 5)
[02:06:09 -8224.260463] SLOW spr round 11 (radius: 5)
[02:06:31 -8224.259474] SLOW spr round 12 (radius: 10)
[02:06:51 -8224.259331] SLOW spr round 13 (radius: 15)
[02:07:20 -8224.259309] SLOW spr round 14 (radius: 20)
[02:07:56 -8224.259305] SLOW spr round 15 (radius: 25)
[02:08:38 -8223.931677] SLOW spr round 16 (radius: 5)
[02:09:05 -8223.931677] SLOW spr round 17 (radius: 10)
[02:09:29 -8223.931677] SLOW spr round 18 (radius: 15)
[02:09:56 -8223.931677] SLOW spr round 19 (radius: 20)
[02:10:33 -8223.931677] SLOW spr round 20 (radius: 25)
[02:11:15 -8223.931677] Model parameter optimization (eps = 0.100000)

[02:11:20] ML tree search #10, logLikelihood: -8223.532888

[02:11:20 -33797.873882] Initial branch length optimization
[02:11:21 -27187.798128] Model parameter optimization (eps = 10.000000)
[02:11:29 -27037.372822] AUTODETECT spr round 1 (radius: 5)
[02:11:47 -18174.537354] AUTODETECT spr round 2 (radius: 10)
[02:12:07 -13474.880892] AUTODETECT spr round 3 (radius: 15)
[02:12:30 -10972.733441] AUTODETECT spr round 4 (radius: 20)
[02:12:58 -9946.707661] AUTODETECT spr round 5 (radius: 25)
[02:13:24 -9782.949186] SPR radius for FAST iterations: 25 (autodetect)
[02:13:24 -9782.949186] Model parameter optimization (eps = 3.000000)
[02:13:30 -9737.997774] FAST spr round 1 (radius: 25)
[02:13:51 -8588.385944] FAST spr round 2 (radius: 25)
[02:14:09 -8452.930857] FAST spr round 3 (radius: 25)
[02:14:26 -8418.364922] FAST spr round 4 (radius: 25)
[02:14:41 -8416.932125] FAST spr round 5 (radius: 25)
[02:14:57 -8415.360686] FAST spr round 6 (radius: 25)
[02:15:12 -8414.201416] FAST spr round 7 (radius: 25)
[02:15:27 -8414.200889] Model parameter optimization (eps = 1.000000)
[02:15:33 -8407.608401] SLOW spr round 1 (radius: 5)
[02:15:52 -8404.421305] SLOW spr round 2 (radius: 5)
[02:16:11 -8402.606886] SLOW spr round 3 (radius: 5)
[02:16:29 -8402.606742] SLOW spr round 4 (radius: 10)
[02:16:49 -8397.477047] SLOW spr round 5 (radius: 5)
[02:17:13 -8395.962498] SLOW spr round 6 (radius: 5)
[02:17:34 -8395.637812] SLOW spr round 7 (radius: 5)
[02:17:53 -8394.588985] SLOW spr round 8 (radius: 5)
[02:18:12 -8394.588897] SLOW spr round 9 (radius: 10)
[02:18:31 -8394.082711] SLOW spr round 10 (radius: 5)
[02:18:55 -8394.082621] SLOW spr round 11 (radius: 10)
[02:19:17 -8390.622081] SLOW spr round 12 (radius: 5)
[02:19:40 -8390.622060] SLOW spr round 13 (radius: 10)
[02:20:02 -8390.622045] SLOW spr round 14 (radius: 15)
[02:20:31 -8312.113518] SLOW spr round 15 (radius: 5)
[02:20:57 -8242.114819] SLOW spr round 16 (radius: 5)
[02:21:19 -8241.911235] SLOW spr round 17 (radius: 5)
[02:21:38 -8241.911234] SLOW spr round 18 (radius: 10)
[02:21:58 -8239.344628] SLOW spr round 19 (radius: 5)
[02:22:22 -8239.344615] SLOW spr round 20 (radius: 10)
[02:22:44 -8239.344614] SLOW spr round 21 (radius: 15)
[02:23:13 -8239.344614] SLOW spr round 22 (radius: 20)
[02:23:50 -8239.344614] SLOW spr round 23 (radius: 25)
[02:24:31 -8239.017380] SLOW spr round 24 (radius: 5)
[02:24:58 -8239.017380] SLOW spr round 25 (radius: 10)
[02:25:22 -8239.017380] SLOW spr round 26 (radius: 15)
[02:25:51 -8239.017380] SLOW spr round 27 (radius: 20)
[02:26:29 -8239.017380] SLOW spr round 28 (radius: 25)
[02:27:10 -8239.017380] Model parameter optimization (eps = 0.100000)

[02:27:13] ML tree search #11, logLikelihood: -8238.666764

[02:27:13 -34208.378546] Initial branch length optimization
[02:27:14 -27344.834586] Model parameter optimization (eps = 10.000000)
[02:27:21 -27123.961467] AUTODETECT spr round 1 (radius: 5)
[02:27:39 -18597.505998] AUTODETECT spr round 2 (radius: 10)
[02:27:59 -14531.567486] AUTODETECT spr round 3 (radius: 15)
[02:28:23 -12005.678462] AUTODETECT spr round 4 (radius: 20)
[02:28:52 -10572.982382] AUTODETECT spr round 5 (radius: 25)
[02:29:24 -10334.976813] SPR radius for FAST iterations: 25 (autodetect)
[02:29:24 -10334.976813] Model parameter optimization (eps = 3.000000)
[02:29:33 -10273.914391] FAST spr round 1 (radius: 25)
[02:29:53 -8384.932035] FAST spr round 2 (radius: 25)
[02:30:10 -8262.982348] FAST spr round 3 (radius: 25)
[02:30:26 -8255.985751] FAST spr round 4 (radius: 25)
[02:30:41 -8255.985722] Model parameter optimization (eps = 1.000000)
[02:30:46 -8254.795042] SLOW spr round 1 (radius: 5)
[02:31:05 -8251.925749] SLOW spr round 2 (radius: 5)
[02:31:24 -8250.273207] SLOW spr round 3 (radius: 5)
[02:31:43 -8250.272401] SLOW spr round 4 (radius: 10)
[02:32:03 -8247.607198] SLOW spr round 5 (radius: 5)
[02:32:27 -8247.607166] SLOW spr round 6 (radius: 10)
[02:32:48 -8243.531427] SLOW spr round 7 (radius: 5)
[02:33:12 -8243.531424] SLOW spr round 8 (radius: 10)
[02:33:33 -8243.531424] SLOW spr round 9 (radius: 15)
[02:34:01 -8233.749541] SLOW spr round 10 (radius: 5)
[02:34:27 -8233.078980] SLOW spr round 11 (radius: 5)
[02:34:49 -8233.077557] SLOW spr round 12 (radius: 10)
[02:35:09 -8233.076201] SLOW spr round 13 (radius: 15)
[02:35:38 -8233.074907] SLOW spr round 14 (radius: 20)
[02:36:14 -8233.073670] SLOW spr round 15 (radius: 25)
[02:36:55 -8233.072488] Model parameter optimization (eps = 0.100000)

[02:36:57] ML tree search #12, logLikelihood: -8233.029505

[02:36:57 -33745.851728] Initial branch length optimization
[02:36:57 -26991.850084] Model parameter optimization (eps = 10.000000)
[02:37:05 -26837.653417] AUTODETECT spr round 1 (radius: 5)
[02:37:23 -18381.625825] AUTODETECT spr round 2 (radius: 10)
[02:37:43 -13434.656618] AUTODETECT spr round 3 (radius: 15)
[02:38:07 -10839.006392] AUTODETECT spr round 4 (radius: 20)
[02:38:35 -9967.942094] AUTODETECT spr round 5 (radius: 25)
[02:39:04 -9661.179806] SPR radius for FAST iterations: 25 (autodetect)
[02:39:04 -9661.179806] Model parameter optimization (eps = 3.000000)
[02:39:13 -9584.524311] FAST spr round 1 (radius: 25)
[02:39:32 -8488.168887] FAST spr round 2 (radius: 25)
[02:39:51 -8288.057793] FAST spr round 3 (radius: 25)
[02:40:08 -8281.534893] FAST spr round 4 (radius: 25)
[02:40:23 -8281.534606] Model parameter optimization (eps = 1.000000)
[02:40:26 -8280.823485] SLOW spr round 1 (radius: 5)
[02:40:46 -8274.922299] SLOW spr round 2 (radius: 5)
[02:41:05 -8272.473609] SLOW spr round 3 (radius: 5)
[02:41:24 -8272.002010] SLOW spr round 4 (radius: 5)
[02:41:43 -8271.046504] SLOW spr round 5 (radius: 5)
[02:42:02 -8271.046486] SLOW spr round 6 (radius: 10)
[02:42:21 -8271.046486] SLOW spr round 7 (radius: 15)
[02:42:50 -8248.773079] SLOW spr round 8 (radius: 5)
[02:43:16 -8243.823473] SLOW spr round 9 (radius: 5)
[02:43:38 -8242.406126] SLOW spr round 10 (radius: 5)
[02:43:58 -8242.405545] SLOW spr round 11 (radius: 10)
[02:44:18 -8241.812480] SLOW spr round 12 (radius: 5)
[02:44:42 -8241.811035] SLOW spr round 13 (radius: 10)
[02:45:03 -8241.810944] SLOW spr round 14 (radius: 15)
[02:45:30 -8241.810935] SLOW spr round 15 (radius: 20)
[02:46:07 -8237.681641] SLOW spr round 16 (radius: 5)
[02:46:34 -8235.463929] SLOW spr round 17 (radius: 5)
[02:46:56 -8235.463425] SLOW spr round 18 (radius: 10)
[02:47:16 -8235.463405] SLOW spr round 19 (radius: 15)
[02:47:44 -8235.463403] SLOW spr round 20 (radius: 20)
[02:48:21 -8235.463403] SLOW spr round 21 (radius: 25)
[02:49:02 -8235.136638] SLOW spr round 22 (radius: 5)
[02:49:29 -8235.136638] SLOW spr round 23 (radius: 10)
[02:49:53 -8235.136638] SLOW spr round 24 (radius: 15)
[02:50:20 -8235.136638] SLOW spr round 25 (radius: 20)
[02:50:57 -8235.136638] SLOW spr round 26 (radius: 25)
[02:51:38 -8235.136638] Model parameter optimization (eps = 0.100000)

[02:51:43] ML tree search #13, logLikelihood: -8234.284880

[02:51:43 -34095.032818] Initial branch length optimization
[02:51:44 -27549.745405] Model parameter optimization (eps = 10.000000)
[02:51:50 -27420.530376] AUTODETECT spr round 1 (radius: 5)
[02:52:08 -18280.070173] AUTODETECT spr round 2 (radius: 10)
[02:52:29 -14177.965390] AUTODETECT spr round 3 (radius: 15)
[02:52:53 -11289.279624] AUTODETECT spr round 4 (radius: 20)
[02:53:17 -10260.270736] AUTODETECT spr round 5 (radius: 25)
[02:53:42 -10119.191737] SPR radius for FAST iterations: 25 (autodetect)
[02:53:42 -10119.191737] Model parameter optimization (eps = 3.000000)
[02:53:52 -10054.519965] FAST spr round 1 (radius: 25)
[02:54:14 -8678.857723] FAST spr round 2 (radius: 25)
[02:54:34 -8489.843194] FAST spr round 3 (radius: 25)
[02:54:53 -8325.009895] FAST spr round 4 (radius: 25)
[02:55:10 -8267.365404] FAST spr round 5 (radius: 25)
[02:55:26 -8267.365281] Model parameter optimization (eps = 1.000000)
[02:55:29 -8266.506041] SLOW spr round 1 (radius: 5)
[02:55:49 -8259.824369] SLOW spr round 2 (radius: 5)
[02:56:08 -8259.529558] SLOW spr round 3 (radius: 5)
[02:56:27 -8259.522942] SLOW spr round 4 (radius: 10)
[02:56:47 -8256.706662] SLOW spr round 5 (radius: 5)
[02:57:13 -8248.127339] SLOW spr round 6 (radius: 5)
[02:57:34 -8248.127292] SLOW spr round 7 (radius: 10)
[02:57:55 -8246.935632] SLOW spr round 8 (radius: 5)
[02:58:19 -8246.935352] SLOW spr round 9 (radius: 10)
[02:58:42 -8241.270197] SLOW spr round 10 (radius: 5)
[02:59:07 -8238.378945] SLOW spr round 11 (radius: 5)
[02:59:28 -8238.378305] SLOW spr round 12 (radius: 10)
[02:59:48 -8238.378208] SLOW spr round 13 (radius: 15)
[03:00:17 -8238.378195] SLOW spr round 14 (radius: 20)
[03:00:53 -8238.378192] SLOW spr round 15 (radius: 25)
[03:01:35 -8238.378191] Model parameter optimization (eps = 0.100000)

[03:01:40] ML tree search #14, logLikelihood: -8236.768026

[03:01:40 -33585.943649] Initial branch length optimization
[03:01:41 -26770.637046] Model parameter optimization (eps = 10.000000)
[03:01:49 -26611.919349] AUTODETECT spr round 1 (radius: 5)
[03:02:07 -17696.409440] AUTODETECT spr round 2 (radius: 10)
[03:02:26 -13461.757290] AUTODETECT spr round 3 (radius: 15)
[03:02:48 -11838.947329] AUTODETECT spr round 4 (radius: 20)
[03:03:13 -10832.126913] AUTODETECT spr round 5 (radius: 25)
[03:03:41 -10586.311357] SPR radius for FAST iterations: 25 (autodetect)
[03:03:41 -10586.311357] Model parameter optimization (eps = 3.000000)
[03:03:48 -10535.575554] FAST spr round 1 (radius: 25)
[03:04:08 -8859.116243] FAST spr round 2 (radius: 25)
[03:04:27 -8447.551134] FAST spr round 3 (radius: 25)
[03:04:44 -8280.812579] FAST spr round 4 (radius: 25)
[03:05:00 -8274.061151] FAST spr round 5 (radius: 25)
[03:05:15 -8274.060184] Model parameter optimization (eps = 1.000000)
[03:05:21 -8269.696398] SLOW spr round 1 (radius: 5)
[03:05:40 -8263.935367] SLOW spr round 2 (radius: 5)
[03:05:59 -8263.234927] SLOW spr round 3 (radius: 5)
[03:06:18 -8263.234731] SLOW spr round 4 (radius: 10)
[03:06:39 -8259.620223] SLOW spr round 5 (radius: 5)
[03:07:04 -8257.457886] SLOW spr round 6 (radius: 5)
[03:07:25 -8257.457727] SLOW spr round 7 (radius: 10)
[03:07:46 -8253.615700] SLOW spr round 8 (radius: 5)
[03:08:10 -8253.507446] SLOW spr round 9 (radius: 5)
[03:08:31 -8253.507437] SLOW spr round 10 (radius: 10)
[03:08:52 -8253.507432] SLOW spr round 11 (radius: 15)
[03:09:22 -8252.650010] SLOW spr round 12 (radius: 5)
[03:09:48 -8251.854088] SLOW spr round 13 (radius: 5)
[03:10:10 -8251.854077] SLOW spr round 14 (radius: 10)
[03:10:30 -8251.854077] SLOW spr round 15 (radius: 15)
[03:11:00 -8251.854077] SLOW spr round 16 (radius: 20)
[03:11:39 -8251.526501] SLOW spr round 17 (radius: 5)
[03:12:05 -8251.526493] SLOW spr round 18 (radius: 10)
[03:12:30 -8251.526493] SLOW spr round 19 (radius: 15)
[03:12:58 -8251.526493] SLOW spr round 20 (radius: 20)
[03:13:38 -8251.526493] SLOW spr round 21 (radius: 25)
[03:14:19 -8251.526493] Model parameter optimization (eps = 0.100000)

[03:14:21] ML tree search #15, logLikelihood: -8251.485996

[03:14:21 -34179.552519] Initial branch length optimization
[03:14:22 -27625.488163] Model parameter optimization (eps = 10.000000)
[03:14:31 -27438.617190] AUTODETECT spr round 1 (radius: 5)
[03:14:49 -17949.177299] AUTODETECT spr round 2 (radius: 10)
[03:15:10 -13196.264818] AUTODETECT spr round 3 (radius: 15)
[03:15:34 -11055.651366] AUTODETECT spr round 4 (radius: 20)
[03:16:07 -10019.580528] AUTODETECT spr round 5 (radius: 25)
[03:16:36 -9963.206517] SPR radius for FAST iterations: 25 (autodetect)
[03:16:36 -9963.206517] Model parameter optimization (eps = 3.000000)
[03:16:43 -9923.244641] FAST spr round 1 (radius: 25)
[03:17:05 -8429.391947] FAST spr round 2 (radius: 25)
[03:17:23 -8291.390954] FAST spr round 3 (radius: 25)
[03:17:40 -8276.434507] FAST spr round 4 (radius: 25)
[03:17:56 -8271.270917] FAST spr round 5 (radius: 25)
[03:18:12 -8270.243821] FAST spr round 6 (radius: 25)
[03:18:27 -8270.243595] Model parameter optimization (eps = 1.000000)
[03:18:32 -8267.769616] SLOW spr round 1 (radius: 5)
[03:18:52 -8261.334087] SLOW spr round 2 (radius: 5)
[03:19:11 -8260.120010] SLOW spr round 3 (radius: 5)
[03:19:30 -8253.060771] SLOW spr round 4 (radius: 5)
[03:19:49 -8240.436244] SLOW spr round 5 (radius: 5)
[03:20:08 -8239.875862] SLOW spr round 6 (radius: 5)
[03:20:26 -8239.875733] SLOW spr round 7 (radius: 10)
[03:20:46 -8239.875697] SLOW spr round 8 (radius: 15)
[03:21:15 -8239.875686] SLOW spr round 9 (radius: 20)
[03:21:50 -8238.312660] SLOW spr round 10 (radius: 5)
[03:22:17 -8233.215837] SLOW spr round 11 (radius: 5)
[03:22:39 -8233.215253] SLOW spr round 12 (radius: 10)
[03:23:00 -8232.761256] SLOW spr round 13 (radius: 5)
[03:23:24 -8232.761256] SLOW spr round 14 (radius: 10)
[03:23:45 -8232.761256] SLOW spr round 15 (radius: 15)
[03:24:13 -8232.761256] SLOW spr round 16 (radius: 20)
[03:24:49 -8232.761256] SLOW spr round 17 (radius: 25)
[03:25:33 -8232.761256] Model parameter optimization (eps = 0.100000)

[03:25:38] ML tree search #16, logLikelihood: -8231.957498

[03:25:38 -34368.196701] Initial branch length optimization
[03:25:39 -27524.227953] Model parameter optimization (eps = 10.000000)
[03:25:47 -27337.216060] AUTODETECT spr round 1 (radius: 5)
[03:26:06 -17976.281011] AUTODETECT spr round 2 (radius: 10)
[03:26:26 -13797.524772] AUTODETECT spr round 3 (radius: 15)
[03:26:50 -11296.950632] AUTODETECT spr round 4 (radius: 20)
[03:27:17 -9978.498002] AUTODETECT spr round 5 (radius: 25)
[03:27:46 -9910.093822] SPR radius for FAST iterations: 25 (autodetect)
[03:27:46 -9910.093822] Model parameter optimization (eps = 3.000000)
[03:27:58 -9856.791536] FAST spr round 1 (radius: 25)
[03:28:19 -8461.408461] FAST spr round 2 (radius: 25)
[03:28:37 -8315.081107] FAST spr round 3 (radius: 25)
[03:28:54 -8304.920808] FAST spr round 4 (radius: 25)
[03:29:09 -8299.532343] FAST spr round 5 (radius: 25)
[03:29:25 -8296.851442] FAST spr round 6 (radius: 25)
[03:29:40 -8296.851158] Model parameter optimization (eps = 1.000000)
[03:29:50 -8294.253702] SLOW spr round 1 (radius: 5)
[03:30:09 -8290.627464] SLOW spr round 2 (radius: 5)
[03:30:28 -8290.626318] SLOW spr round 3 (radius: 10)
[03:30:48 -8281.254755] SLOW spr round 4 (radius: 5)
[03:31:13 -8279.729089] SLOW spr round 5 (radius: 5)
[03:31:34 -8279.714632] SLOW spr round 6 (radius: 10)
[03:31:55 -8273.400085] SLOW spr round 7 (radius: 5)
[03:32:19 -8273.400073] SLOW spr round 8 (radius: 10)
[03:32:40 -8273.400073] SLOW spr round 9 (radius: 15)
[03:33:11 -8245.780219] SLOW spr round 10 (radius: 5)
[03:33:38 -8244.417885] SLOW spr round 11 (radius: 5)
[03:34:00 -8242.077320] SLOW spr round 12 (radius: 5)
[03:34:19 -8242.077318] SLOW spr round 13 (radius: 10)
[03:34:39 -8238.172193] SLOW spr round 14 (radius: 5)
[03:35:03 -8238.172192] SLOW spr round 15 (radius: 10)
[03:35:24 -8238.172192] SLOW spr round 16 (radius: 15)
[03:35:53 -8238.172192] SLOW spr round 17 (radius: 20)
[03:36:32 -8238.172192] SLOW spr round 18 (radius: 25)
[03:37:17 -8238.172192] Model parameter optimization (eps = 0.100000)

[03:37:21] ML tree search #17, logLikelihood: -8237.434386

[03:37:21 -34084.774868] Initial branch length optimization
[03:37:22 -27451.574427] Model parameter optimization (eps = 10.000000)
[03:37:30 -27242.844193] AUTODETECT spr round 1 (radius: 5)
[03:37:48 -18521.349254] AUTODETECT spr round 2 (radius: 10)
[03:38:09 -13622.025220] AUTODETECT spr round 3 (radius: 15)
[03:38:33 -11209.352341] AUTODETECT spr round 4 (radius: 20)
[03:39:00 -10076.895988] AUTODETECT spr round 5 (radius: 25)
[03:39:29 -9951.306836] SPR radius for FAST iterations: 25 (autodetect)
[03:39:29 -9951.306836] Model parameter optimization (eps = 3.000000)
[03:39:39 -9904.563899] FAST spr round 1 (radius: 25)
[03:39:59 -8490.622959] FAST spr round 2 (radius: 25)
[03:40:17 -8284.810001] FAST spr round 3 (radius: 25)
[03:40:34 -8255.548490] FAST spr round 4 (radius: 25)
[03:40:50 -8255.548484] Model parameter optimization (eps = 1.000000)
[03:40:54 -8252.335599] SLOW spr round 1 (radius: 5)
[03:41:13 -8251.129108] SLOW spr round 2 (radius: 5)
[03:41:31 -8251.128237] SLOW spr round 3 (radius: 10)
[03:41:51 -8248.073834] SLOW spr round 4 (radius: 5)
[03:42:16 -8246.634585] SLOW spr round 5 (radius: 5)
[03:42:37 -8246.632092] SLOW spr round 6 (radius: 10)
[03:42:57 -8246.631695] SLOW spr round 7 (radius: 15)
[03:43:25 -8243.040932] SLOW spr round 8 (radius: 5)
[03:43:51 -8241.294801] SLOW spr round 9 (radius: 5)
[03:44:13 -8241.294726] SLOW spr round 10 (radius: 10)
[03:44:34 -8241.294720] SLOW spr round 11 (radius: 15)
[03:45:01 -8240.649352] SLOW spr round 12 (radius: 5)
[03:45:27 -8240.649219] SLOW spr round 13 (radius: 10)
[03:45:50 -8240.649211] SLOW spr round 14 (radius: 15)
[03:46:17 -8240.649210] SLOW spr round 15 (radius: 20)
[03:46:52 -8240.649210] SLOW spr round 16 (radius: 25)
[03:47:32 -8240.649210] Model parameter optimization (eps = 0.100000)

[03:47:33] ML tree search #18, logLikelihood: -8240.624173

[03:47:33 -34156.058549] Initial branch length optimization
[03:47:34 -27286.129895] Model parameter optimization (eps = 10.000000)
[03:47:40 -27132.018893] AUTODETECT spr round 1 (radius: 5)
[03:47:59 -17944.663739] AUTODETECT spr round 2 (radius: 10)
[03:48:19 -13956.029008] AUTODETECT spr round 3 (radius: 15)
[03:48:42 -11337.382593] AUTODETECT spr round 4 (radius: 20)
[03:49:08 -10221.132018] AUTODETECT spr round 5 (radius: 25)
[03:49:32 -9940.793371] SPR radius for FAST iterations: 25 (autodetect)
[03:49:32 -9940.793371] Model parameter optimization (eps = 3.000000)
[03:49:40 -9888.788207] FAST spr round 1 (radius: 25)
[03:49:59 -8473.888816] FAST spr round 2 (radius: 25)
[03:50:17 -8282.731637] FAST spr round 3 (radius: 25)
[03:50:34 -8266.300032] FAST spr round 4 (radius: 25)
[03:50:50 -8259.447941] FAST spr round 5 (radius: 25)
[03:51:05 -8258.556122] FAST spr round 6 (radius: 25)
[03:51:20 -8258.554686] Model parameter optimization (eps = 1.000000)
[03:51:26 -8256.414120] SLOW spr round 1 (radius: 5)
[03:51:45 -8253.623311] SLOW spr round 2 (radius: 5)
[03:52:04 -8253.372749] SLOW spr round 3 (radius: 5)
[03:52:23 -8246.784747] SLOW spr round 4 (radius: 5)
[03:52:42 -8245.740822] SLOW spr round 5 (radius: 5)
[03:53:00 -8245.740299] SLOW spr round 6 (radius: 10)
[03:53:19 -8243.500443] SLOW spr round 7 (radius: 5)
[03:53:44 -8243.499545] SLOW spr round 8 (radius: 10)
[03:54:07 -8241.098702] SLOW spr round 9 (radius: 5)
[03:54:31 -8238.539824] SLOW spr round 10 (radius: 5)
[03:54:51 -8238.539648] SLOW spr round 11 (radius: 10)
[03:55:11 -8238.539642] SLOW spr round 12 (radius: 15)
[03:55:42 -8234.887595] SLOW spr round 13 (radius: 5)
[03:56:08 -8234.710966] SLOW spr round 14 (radius: 5)
[03:56:30 -8234.708622] SLOW spr round 15 (radius: 10)
[03:56:51 -8234.708606] SLOW spr round 16 (radius: 15)
[03:57:21 -8234.708605] SLOW spr round 17 (radius: 20)
[03:57:58 -8234.708605] SLOW spr round 18 (radius: 25)
[03:58:44 -8234.708605] Model parameter optimization (eps = 0.100000)

[03:58:48] ML tree search #19, logLikelihood: -8234.516474

[03:58:48 -33875.493466] Initial branch length optimization
[03:58:48 -27094.019944] Model parameter optimization (eps = 10.000000)
[03:58:56 -26949.997924] AUTODETECT spr round 1 (radius: 5)
[03:59:14 -17861.148233] AUTODETECT spr round 2 (radius: 10)
[03:59:34 -14121.445747] AUTODETECT spr round 3 (radius: 15)
[03:59:58 -11843.725070] AUTODETECT spr round 4 (radius: 20)
[04:00:25 -11079.053491] AUTODETECT spr round 5 (radius: 25)
[04:00:54 -10138.073683] SPR radius for FAST iterations: 25 (autodetect)
[04:00:54 -10138.073683] Model parameter optimization (eps = 3.000000)
[04:01:01 -10088.113801] FAST spr round 1 (radius: 25)
[04:01:22 -8761.756555] FAST spr round 2 (radius: 25)
[04:01:40 -8575.270055] FAST spr round 3 (radius: 25)
[04:01:57 -8552.868995] FAST spr round 4 (radius: 25)
[04:02:14 -8551.139181] FAST spr round 5 (radius: 25)
[04:02:30 -8551.138407] Model parameter optimization (eps = 1.000000)
[04:02:35 -8548.123528] SLOW spr round 1 (radius: 5)
[04:02:55 -8543.788058] SLOW spr round 2 (radius: 5)
[04:03:14 -8543.787344] SLOW spr round 3 (radius: 10)
[04:03:33 -8541.219213] SLOW spr round 4 (radius: 5)
[04:03:59 -8541.204031] SLOW spr round 5 (radius: 10)
[04:04:20 -8539.639086] SLOW spr round 6 (radius: 5)
[04:04:44 -8539.638944] SLOW spr round 7 (radius: 10)
[04:05:06 -8539.638831] SLOW spr round 8 (radius: 15)
[04:05:33 -8536.518145] SLOW spr round 9 (radius: 5)
[04:05:59 -8536.403908] SLOW spr round 10 (radius: 5)
[04:06:21 -8536.403791] SLOW spr round 11 (radius: 10)
[04:06:41 -8534.728376] SLOW spr round 12 (radius: 5)
[04:07:06 -8534.728297] SLOW spr round 13 (radius: 10)
[04:07:27 -8534.728266] SLOW spr round 14 (radius: 15)
[04:07:54 -8534.093904] SLOW spr round 15 (radius: 5)
[04:08:19 -8534.057104] SLOW spr round 16 (radius: 10)
[04:08:42 -8534.056847] SLOW spr round 17 (radius: 15)
[04:09:08 -8534.056822] SLOW spr round 18 (radius: 20)
[04:09:41 -8476.804626] SLOW spr round 19 (radius: 5)
[04:10:09 -8405.303832] SLOW spr round 20 (radius: 5)
[04:10:32 -8321.078584] SLOW spr round 21 (radius: 5)
[04:10:53 -8319.506400] SLOW spr round 22 (radius: 5)
[04:11:13 -8319.506259] SLOW spr round 23 (radius: 10)
[04:11:32 -8319.506206] SLOW spr round 24 (radius: 15)
[04:12:00 -8318.609259] SLOW spr round 25 (radius: 5)
[04:12:26 -8318.609205] SLOW spr round 26 (radius: 10)
[04:12:48 -8318.609165] SLOW spr round 27 (radius: 15)
[04:13:14 -8316.986400] SLOW spr round 28 (radius: 5)
[04:13:40 -8316.986352] SLOW spr round 29 (radius: 10)
[04:14:03 -8316.986324] SLOW spr round 30 (radius: 15)
[04:14:28 -8316.986300] SLOW spr round 31 (radius: 20)
[04:15:01 -8316.450021] SLOW spr round 32 (radius: 5)
[04:15:28 -8263.585060] SLOW spr round 33 (radius: 5)
[04:15:52 -8255.143594] SLOW spr round 34 (radius: 5)
[04:16:12 -8255.143512] SLOW spr round 35 (radius: 10)
[04:16:32 -8255.143510] SLOW spr round 36 (radius: 15)
[04:17:00 -8255.143509] SLOW spr round 37 (radius: 20)
[04:17:33 -8255.143508] SLOW spr round 38 (radius: 25)
[04:18:11 -8255.143508] Model parameter optimization (eps = 0.100000)

[04:18:15] ML tree search #20, logLikelihood: -8254.573683


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.331268,0.417821) (0.164695,0.697956) (0.194028,0.767251) (0.310009,1.928238) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -8223.532888

AIC score: 18397.065777 / AICc score: 1921597.065777 / BIC score: 20241.590567
Free parameters (model + branch lengths): 975

WARNING: Number of free parameters (K=975) is larger than alignment size (n=49).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMY3/3_mltree/Q6ZMY3.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMY3/3_mltree/Q6ZMY3.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMY3/3_mltree/Q6ZMY3.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMY3/3_mltree/Q6ZMY3.raxml.log

Analysis started: 03-Jul-2021 03:58:15 / finished: 03-Jul-2021 08:16:30

Elapsed time: 15495.226 seconds

Consumed energy: 1401.295 Wh (= 7 km in an electric car, or 35 km with an e-scooter!)