RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 14-Jul-2021 13:48:18 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/2_msa/Q6ZMN7_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/3_mltree/Q6ZMN7.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/4_raxmlng_ancestral/Q6ZMN7 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626259698 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/2_msa/Q6ZMN7_nogap_msa.fasta [00:00:00] Loaded alignment with 964 taxa and 1036 sites WARNING: Sequences tr_B4Q547_B4Q547_DROSI_7240 and tr_B4IEQ0_B4IEQ0_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A1D5PDU4_A0A1D5PDU4_CHICK_9031 and tr_H9H138_H9H138_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PDU4_A0A1D5PDU4_CHICK_9031 and tr_A0A2I0LK86_A0A2I0LK86_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PDU4_A0A1D5PDU4_CHICK_9031 and tr_A0A226MEA7_A0A226MEA7_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_G1N497_G1N497_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_M3XQD5_M3XQD5_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_G1RJI8_G1RJI8_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_G3HRQ1_G3HRQ1_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_G3R697_G3R697_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and sp_Q5R7T5_RNF41_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_E2QVC5_E2QVC5_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_H2Q681_H2Q681_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_F7ACG1_F7ACG1_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_I3M2E9_I3M2E9_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_H0WIS7_H0WIS7_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A286XAC3_A0A286XAC3_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and sp_Q9H4P4_RNF41_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_F6RSF7_F6RSF7_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_U3ENC8_U3ENC8_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_G7PIG9_G7PIG9_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_M3WYQ0_M3WYQ0_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2I3MFA3_A0A2I3MFA3_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A091CXP8_A0A091CXP8_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A0D9QYS9_A0A0D9QYS9_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A1U7T917_A0A1U7T917_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2K5KUH1_A0A2K5KUH1_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2K6BF72_A0A2K6BF72_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2K5ZNP8_A0A2K5ZNP8_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2R9A9W7_A0A2R9A9W7_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2U3W1B1_A0A2U3W1B1_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2U3Z7C9_A0A2U3Z7C9_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2Y9RED4_A0A2Y9RED4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2Y9KYM9_A0A2Y9KYM9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_G9KSG9_G9KSG9_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_G3R350_G3R350_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_H2NS97_H2NS97_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_G1U4H9_G1U4H9_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_E2R7R0_E2R7R0_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_K7C2Z3_K7C2Z3_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_F6WIC5_F6WIC5_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_W5Q7I8_W5Q7I8_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A287D2C6_A0A287D2C6_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_H0XNH0_H0XNH0_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A286XD20_A0A286XD20_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and sp_O14907_TX1B3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A1D5Q082_A0A1D5Q082_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_G5B935_G5B935_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_G3TML9_G3TML9_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_U3FIY1_U3FIY1_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_F2Z516_F2Z516_PIG_9823 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_G7PT70_G7PT70_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_Q3ZCD3_Q3ZCD3_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_L5JYX8_L5JYX8_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A2I2U8E9_A0A2I2U8E9_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A096P2E5_A0A096P2E5_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A091DC29_A0A091DC29_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A1S3EZD4_A0A1S3EZD4_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A1U7QA00_A0A1U7QA00_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A2K5LAZ0_A0A2K5LAZ0_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A2K6BA75_A0A2K6BA75_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A2R8Z7U6_A0A2R8Z7U6_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A2U3X227_A0A2U3X227_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A2U3YRT8_A0A2U3YRT8_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A2Y9DKI2_A0A2Y9DKI2_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A2Y9KRZ3_A0A2Y9KRZ3_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A2Y9Q1T8_A0A2Y9Q1T8_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A2Y9FMM7_A0A2Y9FMM7_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9DBG9_TX1B3_MOUSE_10090 and tr_A0A383ZQW2_A0A383ZQW2_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1P655_G1P655_MYOLU_59463 and tr_D2H347_D2H347_AILME_9646 are exactly identical! WARNING: Sequences tr_G1P655_G1P655_MYOLU_59463 and tr_A0A384BGD1_A0A384BGD1_URSMA_29073 are exactly identical! WARNING: Sequences tr_B4HIK9_B4HIK9_DROSE_7238 and tr_A0A1W4VBA8_A0A1W4VBA8_DROFC_30025 are exactly identical! WARNING: Sequences tr_G3QWN1_G3QWN1_GORGO_9595 and tr_K7DKX9_K7DKX9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QWN1_G3QWN1_GORGO_9595 and sp_P57105_SYJ2B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QWN1_G3QWN1_GORGO_9595 and tr_A0A2R8ZAC0_A0A2R8ZAC0_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q2M0J1_Q2M0J1_DROPS_46245 and tr_B4GRK0_B4GRK0_DROPE_7234 are exactly identical! WARNING: Sequences tr_W5PJ70_W5PJ70_SHEEP_9940 and tr_F1SLZ9_F1SLZ9_PIG_9823 are exactly identical! WARNING: Sequences tr_W5PJ70_W5PJ70_SHEEP_9940 and tr_A0A1S3FPD0_A0A1S3FPD0_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A088AEN9_A0A088AEN9_APIME_7460 and tr_A0A2A3E0V4_A0A2A3E0V4_APICC_94128 are exactly identical! WARNING: Sequences tr_F7E732_F7E732_MACMU_9544 and tr_A0A096MV94_A0A096MV94_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7E732_F7E732_MACMU_9544 and tr_A0A2K5KPQ3_A0A2K5KPQ3_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7E732_F7E732_MACMU_9544 and tr_A0A2K6CFY4_A0A2K6CFY4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F4WY68_F4WY68_ACREC_103372 and tr_A0A195EGE8_A0A195EGE8_9HYME_471704 are exactly identical! WARNING: Sequences tr_G1LRM9_G1LRM9_AILME_9646 and tr_A0A1S2ZL53_A0A1S2ZL53_ERIEU_9365 are exactly identical! WARNING: Sequences tr_U3JU11_U3JU11_FICAL_59894 and tr_U3IE64_U3IE64_ANAPL_8839 are exactly identical! WARNING: Sequences tr_U3JU11_U3JU11_FICAL_59894 and tr_A0A0Q3PGW7_A0A0Q3PGW7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_U3JU11_U3JU11_FICAL_59894 and tr_A0A2I0LYJ3_A0A2I0LYJ3_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3JU11_U3JU11_FICAL_59894 and tr_A0A1V4K2G1_A0A1V4K2G1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A194R0D1_A0A194R0D1_PAPMA_76193 and tr_A0A194Q3R8_A0A194Q3R8_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A1S3LAY1_A0A1S3LAY1_SALSA_8030 and tr_A0A060WMF3_A0A060WMF3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3P5M8_A0A1S3P5M8_SALSA_8030 and tr_A0A060XGX8_A0A060XGX8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3S1U1_A0A1S3S1U1_SALSA_8030 and tr_B5X7W6_B5X7W6_SALSA_8030 are exactly identical! WARNING: Sequences tr_B5XCQ0_B5XCQ0_SALSA_8030 and tr_A0A060VYX4_A0A060VYX4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MWM4_A0A226MWM4_CALSU_9009 and tr_A0A226NWG7_A0A226NWG7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NI06_A0A226NI06_CALSU_9009 and tr_A0A226P5N8_A0A226P5N8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5N7G5_A0A2K5N7G5_CERAT_9531 and tr_A0A2K6CCH0_A0A2K6CCH0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2U3ZYY6_A0A2U3ZYY6_TURTR_9739 and tr_A0A2Y9FRT7_A0A2Y9FRT7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3ZYY6_A0A2U3ZYY6_TURTR_9739 and tr_A0A383ZWZ9_A0A383ZWZ9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4A9Z9_A0A2U4A9Z9_TURTR_9739 and tr_A0A2Y9S683_A0A2Y9S683_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 98 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/4_raxmlng_ancestral/Q6ZMN7.raxml.reduced.phy Alignment comprises 1 partitions and 1036 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 1036 Gaps: 57.09 % Invariant sites: 0.19 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/4_raxmlng_ancestral/Q6ZMN7.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/3_mltree/Q6ZMN7.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 259 / 20720 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -371599.200342 [00:00:00 -371599.200342] Initial branch length optimization [00:00:03 -266471.176027] Model parameter optimization (eps = 0.100000) [00:01:27] Tree #1, final logLikelihood: -264958.672807 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.166313,1.278373) (0.062652,0.162463) (0.338220,0.606753) (0.432815,1.321571) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/4_raxmlng_ancestral/Q6ZMN7.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/4_raxmlng_ancestral/Q6ZMN7.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/4_raxmlng_ancestral/Q6ZMN7.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/4_raxmlng_ancestral/Q6ZMN7.raxml.log Analysis started: 14-Jul-2021 13:48:18 / finished: 14-Jul-2021 13:49:54 Elapsed time: 96.188 seconds