RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 10-Jul-2021 06:53:48 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/2_msa/Q6ZMN7_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/3_mltree/Q6ZMN7 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/2_msa/Q6ZMN7_trimmed_msa.fasta [00:00:00] Loaded alignment with 964 taxa and 34 sites WARNING: Sequences tr_B4Q547_B4Q547_DROSI_7240 and tr_B4IEQ0_B4IEQ0_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QLR2_B4QLR2_DROSI_7240 and tr_B4J3P9_B4J3P9_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4QLR2_B4QLR2_DROSI_7240 and tr_B4HIK9_B4HIK9_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QLR2_B4QLR2_DROSI_7240 and tr_B4LDY7_B4LDY7_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QLR2_B4QLR2_DROSI_7240 and tr_B4KYI9_B4KYI9_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QLR2_B4QLR2_DROSI_7240 and tr_A0A0M4EKQ1_A0A0M4EKQ1_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4QLR2_B4QLR2_DROSI_7240 and tr_A0A1W4VBA8_A0A1W4VBA8_DROFC_30025 are exactly identical! WARNING: Sequences tr_E2AYR7_E2AYR7_CAMFO_104421 and tr_A0A026X3U6_A0A026X3U6_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_A0A0G2KY42_A0A0G2KY42_DANRE_7955 and tr_A0A2R8QLD5_A0A2R8QLD5_DANRE_7955 are exactly identical! WARNING: Sequences sp_Q5PYH7_DLG2_DANRE_7955 and tr_G1K9Y0_G1K9Y0_ANOCA_28377 are exactly identical! WARNING: Sequences sp_Q7ZW16_RNF41_DANRE_7955 and tr_H2UR29_H2UR29_TAKRU_31033 are exactly identical! WARNING: Sequences sp_Q7ZW16_RNF41_DANRE_7955 and tr_H3D4Q0_H3D4Q0_TETNG_99883 are exactly identical! WARNING: Sequences sp_Q7ZW16_RNF41_DANRE_7955 and tr_G3P9R7_G3P9R7_GASAC_69293 are exactly identical! WARNING: Sequences sp_Q7ZW16_RNF41_DANRE_7955 and tr_W5KDQ9_W5KDQ9_ASTMX_7994 are exactly identical! WARNING: Sequences sp_Q7ZW16_RNF41_DANRE_7955 and tr_W5UEZ0_W5UEZ0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1D5PDU4_A0A1D5PDU4_CHICK_9031 and tr_H9H138_H9H138_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PDU4_A0A1D5PDU4_CHICK_9031 and tr_G1KGY0_G1KGY0_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A1D5PDU4_A0A1D5PDU4_CHICK_9031 and tr_K7F5K5_K7F5K5_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5PDU4_A0A1D5PDU4_CHICK_9031 and tr_U3J906_U3J906_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PDU4_A0A1D5PDU4_CHICK_9031 and tr_A0A2I0LK86_A0A2I0LK86_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PDU4_A0A1D5PDU4_CHICK_9031 and tr_A0A226MEA7_A0A226MEA7_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PJC2_A0A1D5PJC2_CHICK_9031 and tr_G3UQ93_G3UQ93_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PJC2_A0A1D5PJC2_CHICK_9031 and tr_A0A151N516_A0A151N516_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5PJC2_A0A1D5PJC2_CHICK_9031 and tr_A0A0Q3T7H8_A0A0Q3T7H8_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5PJC2_A0A1D5PJC2_CHICK_9031 and tr_A0A099ZKM8_A0A099ZKM8_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PJC2_A0A1D5PJC2_CHICK_9031 and tr_A0A2I0M118_A0A2I0M118_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PJC2_A0A1D5PJC2_CHICK_9031 and tr_A0A3Q0HH21_A0A3Q0HH21_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1D5PJC2_A0A1D5PJC2_CHICK_9031 and tr_A0A1V4JR12_A0A1V4JR12_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PVI0_A0A1D5PVI0_CHICK_9031 and tr_A0A226NQ01_A0A226NQ01_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PVI0_A0A1D5PVI0_CHICK_9031 and tr_A0A226PIH0_A0A226PIH0_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_G1KSJ7_G1KSJ7_ANOCA_28377 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_K7F652_K7F652_PELSI_13735 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_U3IUT4_U3IUT4_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_A0A0Q3P1Y1_A0A0Q3P1Y1_AMAAE_12930 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_A0A091JBU9_A0A091JBU9_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_A0A091W7P6_A0A091W7P6_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_A0A087RFJ0_A0A087RFJ0_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_A0A093IC18_A0A093IC18_STRCA_441894 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_A0A091WPR6_A0A091WPR6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_A0A0A0A7J0_A0A0A0A7J0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_A0A2I0MJD2_A0A2I0MJD2_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_A0A093GHK3_A0A093GHK3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_A0A091IRQ1_A0A091IRQ1_CALAN_9244 are exactly identical! WARNING: Sequences tr_E1BZ54_E1BZ54_CHICK_9031 and tr_A0A1V4J9K6_A0A1V4J9K6_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1C0T3_E1C0T3_CHICK_9031 and tr_K7FCP9_K7FCP9_PELSI_13735 are exactly identical! WARNING: Sequences tr_E1C0T3_E1C0T3_CHICK_9031 and tr_A0A151MKA6_A0A151MKA6_ALLMI_8496 are exactly identical! WARNING: Sequences tr_E1C0T3_E1C0T3_CHICK_9031 and tr_A0A3Q0G2A0_A0A3Q0G2A0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_E1C4T3_E1C4T3_CHICK_9031 and tr_G1NGL1_G1NGL1_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C4T3_E1C4T3_CHICK_9031 and tr_U3I527_U3I527_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1N9G0_F1N9G0_CHICK_9031 and tr_U3JV71_U3JV71_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1N9G0_F1N9G0_CHICK_9031 and tr_A0A2I0MG53_A0A2I0MG53_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1N9G0_F1N9G0_CHICK_9031 and tr_A0A1V4J592_A0A1V4J592_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1N9G0_F1N9G0_CHICK_9031 and tr_A0A226PNS7_A0A226PNS7_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and sp_Q9DBG9_TX1B3_MOUSE_10090 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_G9KSG9_G9KSG9_MUSPF_9669 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_G1QAQ5_G1QAQ5_MYOLU_59463 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_G3R350_G3R350_GORGO_9595 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_H2NS97_H2NS97_PONAB_9601 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_G1N497_G1N497_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_G1U4H9_G1U4H9_RABIT_9986 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_E2R7R0_E2R7R0_CANLF_9615 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_K7C2Z3_K7C2Z3_PANTR_9598 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_F7A7L7_F7A7L7_ORNAN_9258 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_F6WIC5_F6WIC5_HORSE_9796 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_W5Q7I8_W5Q7I8_SHEEP_9940 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A287D2C6_A0A287D2C6_ICTTR_43179 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_H0XNH0_H0XNH0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A286XD20_A0A286XD20_CAVPO_10141 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and sp_O14907_TX1B3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A1D5Q082_A0A1D5Q082_MACMU_9544 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_G5B935_G5B935_HETGA_10181 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_G3TML9_G3TML9_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_U3FIY1_U3FIY1_CALJA_9483 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_F2Z516_F2Z516_PIG_9823 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_G1LRM9_G1LRM9_AILME_9646 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_G7PT70_G7PT70_MACFA_9541 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_Q3ZCD3_Q3ZCD3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_L5JYX8_L5JYX8_PTEAL_9402 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A2I2U8E9_A0A2I2U8E9_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_U3JU11_U3JU11_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_U3IE64_U3IE64_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A096P2E5_A0A096P2E5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A091DC29_A0A091DC29_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A0Q3PGW7_A0A0Q3PGW7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A2I0LYJ3_A0A2I0LYJ3_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A1S2ZL53_A0A1S2ZL53_ERIEU_9365 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A1S3EZD4_A0A1S3EZD4_DIPOR_10020 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A1U7QA00_A0A1U7QA00_MESAU_10036 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A1V4K2G1_A0A1V4K2G1_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A218UUJ6_A0A218UUJ6_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A226MWM4_A0A226MWM4_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A226NWG7_A0A226NWG7_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A2K5LAZ0_A0A2K5LAZ0_CERAT_9531 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A2K6BA75_A0A2K6BA75_MACNE_9545 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A2K5YZ23_A0A2K5YZ23_MANLE_9568 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A2R8Z7U6_A0A2R8Z7U6_PANPA_9597 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A2U3X227_A0A2U3X227_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A2U3YRT8_A0A2U3YRT8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A2Y9DKI2_A0A2Y9DKI2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A2Y9KRZ3_A0A2Y9KRZ3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A2Y9Q1T8_A0A2Y9Q1T8_DELLE_9749 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A2Y9FMM7_A0A2Y9FMM7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A384CF50_A0A384CF50_URSMA_29073 are exactly identical! WARNING: Sequences tr_F1NK54_F1NK54_CHICK_9031 and tr_A0A383ZQW2_A0A383ZQW2_BALAS_310752 are exactly identical! WARNING: Sequences tr_E9PUZ9_E9PUZ9_MOUSE_10090 and tr_D3ZNV5_D3ZNV5_RAT_10116 are exactly identical! WARNING: Sequences sp_Q63ZW7_INADL_MOUSE_10090 and tr_F1MAD2_F1MAD2_RAT_10116 are exactly identical! WARNING: Sequences sp_Q69ZS0_PZRN3_MOUSE_10090 and tr_G3GS46_G3GS46_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q69ZS0_PZRN3_MOUSE_10090 and sp_P68907_PZRN3_RAT_10116 are exactly identical! WARNING: Sequences sp_Q69ZS0_PZRN3_MOUSE_10090 and tr_A0A1U7QNH3_A0A1U7QNH3_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_M3XQD5_M3XQD5_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_G1RJI8_G1RJI8_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_G1P655_G1P655_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_G3HRQ1_G3HRQ1_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_G3R697_G3R697_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and sp_Q5R7T5_RNF41_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_G1SYH8_G1SYH8_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_E2QVC5_E2QVC5_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_H2Q681_H2Q681_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_F7ACG1_F7ACG1_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_I3M2E9_I3M2E9_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_H0WIS7_H0WIS7_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A286XAC3_A0A286XAC3_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and sp_Q9H4P4_RNF41_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_F6RSF7_F6RSF7_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_G3VIL7_G3VIL7_SARHA_9305 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_U3ENC8_U3ENC8_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_D2H347_D2H347_AILME_9646 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_G7PIG9_G7PIG9_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_M3WYQ0_M3WYQ0_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2I3MFA3_A0A2I3MFA3_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A091CXP8_A0A091CXP8_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A0D9QYS9_A0A0D9QYS9_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A1S3ADM8_A0A1S3ADM8_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A1U7T917_A0A1U7T917_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2K5KUH1_A0A2K5KUH1_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2K6BF72_A0A2K6BF72_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2K5ZNP8_A0A2K5ZNP8_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2R9A9W7_A0A2R9A9W7_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2U3W1B1_A0A2U3W1B1_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2U3Z7C9_A0A2U3Z7C9_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2Y9RED4_A0A2Y9RED4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A2Y9KYM9_A0A2Y9KYM9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q8BH75_RNF41_MOUSE_10090 and tr_A0A384BGD1_A0A384BGD1_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q9D6K5_SYJ2B_MOUSE_10090 and tr_A0A096NVV6_A0A096NVV6_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q9QY39_PDZD4_MOUSE_10090 and tr_G3HSW7_G3HSW7_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q9QY39_PDZD4_MOUSE_10090 and tr_D3ZLI9_D3ZLI9_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9QY39_PDZD4_MOUSE_10090 and tr_H0VYX2_H0VYX2_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q9QY39_PDZD4_MOUSE_10090 and tr_A0A1U8CPH4_A0A1U8CPH4_MESAU_10036 are exactly identical! WARNING: Sequences tr_W5J2C6_W5J2C6_ANODA_43151 and tr_Q7PUE3_Q7PUE3_ANOGA_7165 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_G3RR14_G3RR14_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_H2NGZ7_H2NGZ7_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_J9NUF6_J9NUF6_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_H2R7B9_H2R7B9_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_I3MKL2_I3MKL2_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_H0UTS3_H0UTS3_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and sp_Q6ZMN7_PZRN4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_F7HRK7_F7HRK7_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_G3STS8_G3STS8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_F7DYD9_F7DYD9_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_G1LUW4_G1LUW4_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_L5K9V2_L5K9V2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_A0A337SQA0_A0A337SQA0_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_A0A2I3N0S1_A0A2I3N0S1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_A0A0D9R444_A0A0D9R444_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_A0A1U7TGC6_A0A1U7TGC6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_A0A2K5XAY5_A0A2K5XAY5_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_A0A2R9CLZ8_A0A2R9CLZ8_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_A0A2U3W2R8_A0A2U3W2R8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_A0A2Y9E008_A0A2Y9E008_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_A0A2Y9KN70_A0A2Y9KN70_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XML1_M3XML1_MUSPF_9669 and tr_A0A384D7D9_A0A384D7D9_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y7X9_M3Y7X9_MUSPF_9669 and tr_A0A2Y9JKN2_A0A2Y9JKN2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_G1RTE5_G1RTE5_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_G3S2K9_G3S2K9_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_H2PX64_H2PX64_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_G1TD74_G1TD74_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_F1PXK6_F1PXK6_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_H2QZ99_H2QZ99_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_F6XRI3_F6XRI3_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_W5P8Z0_W5P8Z0_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_H0WUT7_H0WUT7_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and sp_Q76G19_PDZD4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_I2CXE3_I2CXE3_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_F7H192_F7H192_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_K7GRK2_K7GRK2_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_G7Q201_G7Q201_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_L5KEG2_L5KEG2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_M3W1G6_M3W1G6_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_A0A096MPB7_A0A096MPB7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_A0A0D9R3H1_A0A0D9R3H1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_A0A3Q0EGM9_A0A3Q0EGM9_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_A0A2K5NZ82_A0A2K5NZ82_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_A0A2K6DLE6_A0A2K6DLE6_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_A0A2R9BW97_A0A2R9BW97_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_A0A2U4B7M4_A0A2U4B7M4_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_A0A2Y9ILZ8_A0A2Y9ILZ8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_A0A2Y9MKU8_A0A2Y9MKU8_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_A0A2Y9S1J5_A0A2Y9S1J5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YBS8_M3YBS8_MUSPF_9669 and tr_A0A384AE98_A0A384AE98_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A2I3G2Y6_A0A2I3G2Y6_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_G3QZ25_G3QZ25_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_H2PA91_H2PA91_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_U3KN27_U3KN27_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_J9NZA3_J9NZA3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_F7CWH8_F7CWH8_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_W5PHZ8_W5PHZ8_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_I3N819_I3N819_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_H0XZV5_H0XZV5_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and sp_Q9UPQ7_PZRN3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_F7E732_F7E732_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_G3TDR5_G3TDR5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_U3DEE5_U3DEE5_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_F1SFM6_F1SFM6_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_G7NYX5_G7NYX5_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_F1MRX7_F1MRX7_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A337RYF0_A0A337RYF0_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A096MV94_A0A096MV94_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A0D9RG84_A0A0D9RG84_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A1S3EPA9_A0A1S3EPA9_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A1U7TV40_A0A1U7TV40_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A2K5KPQ3_A0A2K5KPQ3_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A2K6CFY4_A0A2K6CFY4_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A2K5YK20_A0A2K5YK20_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A2R9BJK2_A0A2R9BJK2_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A2U4CC31_A0A2U4CC31_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A2U3W8N3_A0A2U3W8N3_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A2Y9QWD3_A0A2Y9QWD3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A2Y9J2M5_A0A2Y9J2M5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A2Y9N575_A0A2Y9N575_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A2Y9STP6_A0A2Y9STP6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A384D3T3_A0A384D3T3_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YZZ2_M3YZZ2_MUSPF_9669 and tr_A0A384AYM8_A0A384AYM8_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q8MR31_SLIP1_DROME_7227 and tr_B4IIY2_B4IIY2_DROSE_7238 are exactly identical! WARNING: Sequences tr_Q9VUV7_Q9VUV7_DROME_7227 and tr_B4N716_B4N716_DROWI_7260 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_G3H1N0_G3H1N0_CRIGR_10029 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_G3QWN1_G3QWN1_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_G1SVD7_G1SVD7_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_K7DKX9_K7DKX9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_F6SEP2_F6SEP2_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and sp_Q9WVJ4_SYJ2B_RAT_10116 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and sp_P57105_SYJ2B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_A0A1D5R1G0_A0A1D5R1G0_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_G3TGY2_G3TGY2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_F7FET8_F7FET8_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_A0A2I2UDJ5_A0A2I2UDJ5_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_A0A1U7QI68_A0A1U7QI68_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_A0A2K5N7G5_A0A2K5N7G5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_A0A2K6CCH0_A0A2K6CCH0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_A0A2K5YJV0_A0A2K5YJV0_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QMJ5_G1QMJ5_NOMLE_61853 and tr_A0A2R8ZAC0_A0A2R8ZAC0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NT15_G1NT15_MYOLU_59463 and tr_H0X8S8_H0X8S8_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1NT15_G1NT15_MYOLU_59463 and tr_A0A1S3A8V6_A0A1S3A8V6_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1P2H7_G1P2H7_MYOLU_59463 and tr_A0A1S3WRA1_A0A1S3WRA1_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1Q8V8_G1Q8V8_MYOLU_59463 and tr_L5KD31_L5KD31_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1Q8V8_G1Q8V8_MYOLU_59463 and tr_A0A0D9RKM8_A0A0D9RKM8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1Q8V8_G1Q8V8_MYOLU_59463 and tr_A0A1S3AHP5_A0A1S3AHP5_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1Q8V8_G1Q8V8_MYOLU_59463 and tr_A0A3Q0DUG2_A0A3Q0DUG2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3GS45_G3GS45_CRIGR_10029 and tr_H3AQM8_H3AQM8_LATCH_7897 are exactly identical! WARNING: Sequences tr_G3GS45_G3GS45_CRIGR_10029 and tr_A0A1L8GHY2_A0A1L8GHY2_XENLA_8355 are exactly identical! WARNING: Sequences tr_H2N774_H2N774_PONAB_9601 and tr_A0A1D5QRJ6_A0A1D5QRJ6_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2N774_H2N774_PONAB_9601 and tr_F7I9N8_F7I9N8_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2N774_H2N774_PONAB_9601 and tr_L5K4D3_L5K4D3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_H2N774_H2N774_PONAB_9601 and tr_A0A096N1C8_A0A096N1C8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2N774_H2N774_PONAB_9601 and tr_A0A0D9S742_A0A0D9S742_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2N774_H2N774_PONAB_9601 and tr_A0A2K5N4G6_A0A2K5N4G6_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2N774_H2N774_PONAB_9601 and tr_A0A2K6B0E9_A0A2K6B0E9_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2N774_H2N774_PONAB_9601 and tr_A0A2K5Z6V7_A0A2K5Z6V7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1NAW8_G1NAW8_MELGA_9103 and tr_A0A091EPX8_A0A091EPX8_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1NAW8_G1NAW8_MELGA_9103 and tr_A0A093QP91_A0A093QP91_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1NAW8_G1NAW8_MELGA_9103 and tr_A0A099ZHH4_A0A099ZHH4_TINGU_94827 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_H0ZWA9_H0ZWA9_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_U3KG89_U3KG89_FICAL_59894 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_U3J329_U3J329_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A0Q3M7C8_A0A0Q3M7C8_AMAAE_12930 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A091E7W6_A0A091E7W6_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A091JPE3_A0A091JPE3_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A093Q188_A0A093Q188_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A091VG87_A0A091VG87_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A087R9X7_A0A087R9X7_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A093I3Q7_A0A093I3Q7_STRCA_441894 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A091WBY2_A0A091WBY2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A099YTV2_A0A099YTV2_TINGU_94827 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A091G660_A0A091G660_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A0A0ADW4_A0A0A0ADW4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A2I0M9L5_A0A2I0M9L5_COLLI_8932 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A093G6E8_A0A093G6E8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A091ICZ0_A0A091ICZ0_CALAN_9244 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A1V4K909_A0A1V4K909_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A218UGU5_A0A218UGU5_9PASE_299123 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A226NL35_A0A226NL35_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1NBK6_G1NBK6_MELGA_9103 and tr_A0A226PQ62_A0A226PQ62_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q29CV1_Q29CV1_DROPS_46245 and tr_B4H892_B4H892_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q2M0J1_Q2M0J1_DROPS_46245 and tr_B4GRK0_B4GRK0_DROPE_7234 are exactly identical! WARNING: Sequences tr_F1P8B1_F1P8B1_CANLF_9615 and tr_A0A2U3XSV1_A0A2U3XSV1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F1P8B1_F1P8B1_CANLF_9615 and tr_A0A384CVC5_A0A384CVC5_URSMA_29073 are exactly identical! WARNING: Sequences tr_J9JHV1_J9JHV1_CANLF_9615 and tr_F6ZZY6_F6ZZY6_HORSE_9796 are exactly identical! WARNING: Sequences tr_J9JHV1_J9JHV1_CANLF_9615 and tr_W5PGV1_W5PGV1_SHEEP_9940 are exactly identical! WARNING: Sequences tr_J9JHV1_J9JHV1_CANLF_9615 and tr_A0A2U3WQ60_A0A2U3WQ60_ODORO_9708 are exactly identical! WARNING: Sequences tr_J9JHV1_J9JHV1_CANLF_9615 and tr_A0A2U3XNB8_A0A2U3XNB8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_J9JHV1_J9JHV1_CANLF_9615 and tr_A0A2Y9NJH0_A0A2Y9NJH0_DELLE_9749 are exactly identical! WARNING: Sequences tr_J9JHV1_J9JHV1_CANLF_9615 and tr_A0A383YNM6_A0A383YNM6_BALAS_310752 are exactly identical! WARNING: Sequences tr_H2PZ54_H2PZ54_PANTR_9598 and tr_A0A2R9BW65_A0A2R9BW65_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7BTZ0_F7BTZ0_MONDO_13616 and tr_I3NHE9_I3NHE9_ICTTR_43179 are exactly identical! WARNING: Sequences tr_F7BTZ0_F7BTZ0_MONDO_13616 and tr_G3VAI3_G3VAI3_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7BTZ0_F7BTZ0_MONDO_13616 and tr_F1MWQ6_F1MWQ6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F7BTZ0_F7BTZ0_MONDO_13616 and tr_A0A091DHR6_A0A091DHR6_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F7BTZ0_F7BTZ0_MONDO_13616 and tr_A0A1S3GQ28_A0A1S3GQ28_DIPOR_10020 are exactly identical! WARNING: Sequences tr_F7FYR9_F7FYR9_MONDO_13616 and tr_G3WW77_G3WW77_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5P2E2_W5P2E2_SHEEP_9940 and tr_F1MQE8_F1MQE8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P2E2_W5P2E2_SHEEP_9940 and sp_Q3T0C9_SYJ2B_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P2E2_W5P2E2_SHEEP_9940 and tr_A0A2U4A9Z9_A0A2U4A9Z9_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5P2E2_W5P2E2_SHEEP_9940 and tr_A0A2Y9N3G7_A0A2Y9N3G7_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5P2E2_W5P2E2_SHEEP_9940 and tr_A0A2Y9S683_A0A2Y9S683_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5P2E2_W5P2E2_SHEEP_9940 and tr_A0A384AAT8_A0A384AAT8_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5PJ70_W5PJ70_SHEEP_9940 and tr_G5BB83_G5BB83_HETGA_10181 are exactly identical! WARNING: Sequences tr_W5PJ70_W5PJ70_SHEEP_9940 and tr_G3TDZ4_G3TDZ4_LOXAF_9785 are exactly identical! WARNING: Sequences tr_W5PJ70_W5PJ70_SHEEP_9940 and tr_F1SLZ9_F1SLZ9_PIG_9823 are exactly identical! WARNING: Sequences tr_W5PJ70_W5PJ70_SHEEP_9940 and tr_F1N658_F1N658_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PJ70_W5PJ70_SHEEP_9940 and tr_L5KUZ3_L5KUZ3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_W5PJ70_W5PJ70_SHEEP_9940 and tr_A0A1S3FPD0_A0A1S3FPD0_DIPOR_10020 are exactly identical! WARNING: Sequences tr_W5PJ70_W5PJ70_SHEEP_9940 and tr_A0A2U3ZYY6_A0A2U3ZYY6_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5PJ70_W5PJ70_SHEEP_9940 and tr_A0A2Y9N804_A0A2Y9N804_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5PJ70_W5PJ70_SHEEP_9940 and tr_A0A2Y9FRT7_A0A2Y9FRT7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5PJ70_W5PJ70_SHEEP_9940 and tr_A0A383ZWZ9_A0A383ZWZ9_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5QF05_W5QF05_SHEEP_9940 and tr_F1MUR5_F1MUR5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A3B5PZR4_A0A3B5PZR4_XIPMA_8083 and tr_A0A087YBX9_A0A087YBX9_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5Q2S6_A0A3B5Q2S6_XIPMA_8083 and tr_A0A096LYV4_A0A096LYV4_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QLQ6_A0A3B5QLQ6_XIPMA_8083 and tr_A0A087XED9_A0A087XED9_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5R4T1_A0A3B5R4T1_XIPMA_8083 and tr_A0A096M064_A0A096M064_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5R6Y9_A0A3B5R6Y9_XIPMA_8083 and tr_I3KJD7_I3KJD7_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5R6Y9_A0A3B5R6Y9_XIPMA_8083 and tr_A0A087X6V7_A0A087X6V7_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5RE63_A0A3B5RE63_XIPMA_8083 and tr_I3KWN4_I3KWN4_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5RE63_A0A3B5RE63_XIPMA_8083 and tr_H2TII8_H2TII8_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B5RE63_A0A3B5RE63_XIPMA_8083 and tr_H3CPH4_H3CPH4_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B5RE63_A0A3B5RE63_XIPMA_8083 and tr_A0A096LUU6_A0A096LUU6_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4ABG7_M4ABG7_XIPMA_8083 and tr_A0A087XVZ1_A0A087XVZ1_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AEN9_A0A088AEN9_APIME_7460 and tr_A0A2A3E0V4_A0A2A3E0V4_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088AUW9_A0A088AUW9_APIME_7460 and tr_E2B809_E2B809_HARSA_610380 are exactly identical! WARNING: Sequences tr_A0A088AUW9_A0A088AUW9_APIME_7460 and tr_A0A026X1E3_A0A026X1E3_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_A0A088AUW9_A0A088AUW9_APIME_7460 and tr_A0A0L7QL57_A0A0L7QL57_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A088AUW9_A0A088AUW9_APIME_7460 and tr_A0A154PL93_A0A154PL93_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A088AUW9_A0A088AUW9_APIME_7460 and tr_A0A2A3E640_A0A2A3E640_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NCF0_A0A158NCF0_ATTCE_12957 and tr_A0A195BY97_A0A195BY97_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NCF0_A0A158NCF0_ATTCE_12957 and tr_A0A195F9I6_A0A195F9I6_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NCF0_A0A158NCF0_ATTCE_12957 and tr_A0A151IBX5_A0A151IBX5_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A158NT07_A0A158NT07_ATTCE_12957 and tr_F4WY68_F4WY68_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NT07_A0A158NT07_ATTCE_12957 and tr_A0A151X6Q9_A0A151X6Q9_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NT07_A0A158NT07_ATTCE_12957 and tr_A0A195EGE8_A0A195EGE8_9HYME_471704 are exactly identical! WARNING: Sequences tr_I3KBW2_I3KBW2_ORENI_8128 and tr_A0A2U9C0I0_A0A2U9C0I0_SCOMX_52904 are exactly identical! WARNING: Sequences tr_I3KIV4_I3KIV4_ORENI_8128 and tr_A0A2I4BVE3_A0A2I4BVE3_9TELE_52670 are exactly identical! WARNING: Sequences tr_I3KJC4_I3KJC4_ORENI_8128 and tr_A0A2I4BXI9_A0A2I4BXI9_9TELE_52670 are exactly identical! WARNING: Sequences tr_I3MMX4_I3MMX4_ICTTR_43179 and tr_G5BQL8_G5BQL8_HETGA_10181 are exactly identical! WARNING: Sequences tr_I3MMX4_I3MMX4_ICTTR_43179 and tr_A0A091DN72_A0A091DN72_FUKDA_885580 are exactly identical! WARNING: Sequences tr_H0WLW5_H0WLW5_OTOGA_30611 and tr_A0A3Q0E7B8_A0A3Q0E7B8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A286X8B9_A0A286X8B9_CAVPO_10141 and tr_G5BD91_G5BD91_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A286X8B9_A0A286X8B9_CAVPO_10141 and tr_A0A091DF93_A0A091DF93_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A0K0J7W3_A0A0K0J7W3_BRUMA_6279 and tr_A0A0R3QKH9_A0A0R3QKH9_9BILA_42155 are exactly identical! WARNING: Sequences tr_E5S152_E5S152_TRISP_6334 and tr_A0A0V0SEC8_A0A0V0SEC8_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5S152_E5S152_TRISP_6334 and tr_A0A0V1CYS1_A0A0V1CYS1_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5S152_E5S152_TRISP_6334 and tr_A0A0V0WKD2_A0A0V0WKD2_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5S152_E5S152_TRISP_6334 and tr_A0A0V0UZC5_A0A0V0UZC5_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5S152_E5S152_TRISP_6334 and tr_A0A0V1LP10_A0A0V1LP10_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5S152_E5S152_TRISP_6334 and tr_A0A0V0ZQS5_A0A0V0ZQS5_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5S152_E5S152_TRISP_6334 and tr_A0A0V0XQN9_A0A0V0XQN9_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5S152_E5S152_TRISP_6334 and tr_A0A0V1MTJ1_A0A0V1MTJ1_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5S152_E5S152_TRISP_6334 and tr_A0A0V1PM35_A0A0V1PM35_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5S152_E5S152_TRISP_6334 and tr_A0A0V1HYW7_A0A0V1HYW7_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5S152_E5S152_TRISP_6334 and tr_A0A0V0TJ76_A0A0V0TJ76_9BILA_144512 are exactly identical! WARNING: Sequences tr_D6W6U2_D6W6U2_TRICA_7070 and tr_N6U797_N6U797_DENPD_77166 are exactly identical! WARNING: Sequences tr_G3PD91_G3PD91_GASAC_69293 and tr_A0A2I4BAZ8_A0A2I4BAZ8_9TELE_52670 are exactly identical! WARNING: Sequences tr_H0Z5W4_H0Z5W4_TAEGU_59729 and tr_A0A218V5C8_A0A218V5C8_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZNS6_H0ZNS6_TAEGU_59729 and tr_U3JSG4_U3JSG4_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZNS6_H0ZNS6_TAEGU_59729 and tr_A0A091EJN1_A0A091EJN1_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZNS6_H0ZNS6_TAEGU_59729 and tr_A0A218V5S0_A0A218V5S0_9PASE_299123 are exactly identical! WARNING: Sequences tr_G0MVJ1_G0MVJ1_CAEBE_135651 and tr_A8WT01_A8WT01_CAEBR_6238 are exactly identical! WARNING: Sequences tr_G0MVJ1_G0MVJ1_CAEBE_135651 and tr_A0A2G5V292_A0A2G5V292_9PELO_1611254 are exactly identical! WARNING: Sequences tr_F6RN65_F6RN65_XENTR_8364 and tr_A0A1L8GYQ7_A0A1L8GYQ7_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7DH32_F7DH32_XENTR_8364 and tr_A0A1L8H9R0_A0A1L8H9R0_XENLA_8355 are exactly identical! WARNING: Sequences tr_E3M548_E3M548_CAERE_31234 and tr_A0A261AQA4_A0A261AQA4_9PELO_1503980 are exactly identical! WARNING: Sequences tr_H3B1B5_H3B1B5_LATCH_7897 and tr_A0A226N8C7_A0A226N8C7_CALSU_9009 are exactly identical! WARNING: Sequences tr_H3B1B5_H3B1B5_LATCH_7897 and tr_A0A226P9M3_A0A226P9M3_COLVI_9014 are exactly identical! WARNING: Sequences tr_B4MF39_B4MF39_DROVI_7244 and tr_D0Z7E0_D0Z7E0_DROVI_7244 are exactly identical! WARNING: Sequences tr_G1MJI3_G1MJI3_AILME_9646 and tr_A0A2U3WK41_A0A2U3WK41_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1MJI3_G1MJI3_AILME_9646 and tr_A0A2U3Y9X3_A0A2U3Y9X3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1MJI3_G1MJI3_AILME_9646 and tr_A0A384DL05_A0A384DL05_URSMA_29073 are exactly identical! WARNING: Sequences tr_L5KAB1_L5KAB1_PTEAL_9402 and tr_A0A091DTQ8_A0A091DTQ8_FUKDA_885580 are exactly identical! WARNING: Sequences tr_R7U000_R7U000_CAPTE_283909 and tr_R7VLB0_R7VLB0_CAPTE_283909 are exactly identical! WARNING: Sequences tr_A0A3B1IHT9_A0A3B1IHT9_ASTMX_7994 and tr_A0A0P7UZI2_A0A0P7UZI2_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A3B1IHT9_A0A3B1IHT9_ASTMX_7994 and tr_A0A1S3LLK4_A0A1S3LLK4_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B1IHT9_A0A3B1IHT9_ASTMX_7994 and tr_A0A2I4BFB1_A0A2I4BFB1_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A3B1IHT9_A0A3B1IHT9_ASTMX_7994 and tr_A0A060WPU4_A0A060WPU4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_W5MAN1_W5MAN1_LEPOC_7918 and tr_A0A0P7VMA1_A0A0P7VMA1_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A044R7M6_A0A044R7M6_ONCVO_6282 and tr_A0A182EFS8_A0A182EFS8_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044T3U0_A0A044T3U0_ONCVO_6282 and tr_A0A0R3S5P7_A0A0R3S5P7_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A044T3U0_A0A044T3U0_ONCVO_6282 and tr_A0A182EFS2_A0A182EFS2_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0K0G506_A0A0K0G506_STRVS_75913 and tr_A0A0N5CE05_A0A0N5CE05_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A151MY36_A0A151MY36_ALLMI_8496 and tr_A0A1U7RW14_A0A1U7RW14_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NJS7_A0A151NJS7_ALLMI_8496 and tr_A0A1U8D7E2_A0A1U8D7E2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151PF24_A0A151PF24_ALLMI_8496 and tr_A0A1U8D9Z9_A0A1U8D9Z9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091ECL9_A0A091ECL9_CORBR_85066 and tr_A0A087R9X8_A0A087R9X8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091ECL9_A0A091ECL9_CORBR_85066 and tr_A0A091I9N9_A0A091I9N9_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091EQS8_A0A091EQS8_CORBR_85066 and tr_A0A091J1U2_A0A091J1U2_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091EQS8_A0A091EQS8_CORBR_85066 and tr_A0A0A0AEY1_A0A0A0AEY1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091J6R5_A0A091J6R5_EGRGA_188379 and tr_A0A091VE97_A0A091VE97_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091J6R5_A0A091J6R5_EGRGA_188379 and tr_A0A091WS48_A0A091WS48_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091J6R5_A0A091J6R5_EGRGA_188379 and tr_A0A093GQZ5_A0A093GQZ5_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A194R0D1_A0A194R0D1_PAPMA_76193 and tr_A0A194Q3R8_A0A194Q3R8_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A093QD36_A0A093QD36_9PASS_328815 and tr_A0A087RHX3_A0A087RHX3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091XPI8_A0A091XPI8_OPIHO_30419 and tr_A0A099ZEX0_A0A099ZEX0_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A2I0MCB4_A0A2I0MCB4_COLLI_8932 and tr_A0A1V4JXY9_A0A1V4JXY9_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3HG09_A0A1S3HG09_LINUN_7574 and tr_A0A1S3HQF4_A0A1S3HQF4_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3JHD8_A0A1S3JHD8_LINUN_7574 and tr_A0A1S3JIP0_A0A1S3JIP0_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3LAY1_A0A1S3LAY1_SALSA_8030 and tr_A0A060WMF3_A0A060WMF3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3LJ97_A0A1S3LJ97_SALSA_8030 and tr_B5XCQ0_B5XCQ0_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3LJ97_A0A1S3LJ97_SALSA_8030 and tr_A0A060VYX4_A0A060VYX4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MGP5_A0A1S3MGP5_SALSA_8030 and tr_A0A060WKD1_A0A060WKD1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3P2I7_A0A1S3P2I7_SALSA_8030 and tr_A0A060W8Y0_A0A060W8Y0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3P5M8_A0A1S3P5M8_SALSA_8030 and tr_A0A060XGX8_A0A060XGX8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3S1U1_A0A1S3S1U1_SALSA_8030 and tr_B5X7W6_B5X7W6_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3T4A2_A0A1S3T4A2_SALSA_8030 and tr_A0A060XQ06_A0A060XQ06_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226N875_A0A226N875_CALSU_9009 and tr_A0A226PAF0_A0A226PAF0_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NI06_A0A226NI06_CALSU_9009 and tr_A0A226P5N8_A0A226P5N8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2A2JSC5_A0A2A2JSC5_9BILA_2018661 and tr_A0A2A2LC03_A0A2A2LC03_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2A2JYX2_A0A2A2JYX2_9BILA_2018661 and tr_A0A2A2KUZ0_A0A2A2KUZ0_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2D0PSQ4_A0A2D0PSQ4_ICTPU_7998 and tr_A0A2D0PUE2_A0A2D0PUE2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PSQ4_A0A2D0PSQ4_ICTPU_7998 and tr_A0A2D0PVA6_A0A2D0PVA6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RY94_A0A2D0RY94_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RY95_A0A2D0RY95_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RY98_A0A2D0RY98_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RY99_A0A2D0RY99_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RYA3_A0A2D0RYA3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RYA4_A0A2D0RYA4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RYA5_A0A2D0RYA5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RYA8_A0A2D0RYA8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RZ58_A0A2D0RZ58_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RZ63_A0A2D0RZ63_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RZT7_A0A2D0RZT7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RY89_A0A2D0RY89_ICTPU_7998 and tr_A0A2D0RZU2_A0A2D0RZU2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S028_A0A2D0S028_ICTPU_7998 and tr_A0A2D0S0Q2_A0A2D0S0Q2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G8JEX1_A0A2G8JEX1_STIJA_307972 and tr_A0A2G8LAG1_A0A2G8LAG1_STIJA_307972 are exactly identical! WARNING: Sequences tr_A0A2G8JHQ6_A0A2G8JHQ6_STIJA_307972 and tr_A0A2G8LB09_A0A2G8LB09_STIJA_307972 are exactly identical! WARNING: Sequences tr_A0A2J7R168_A0A2J7R168_9NEOP_105785 and tr_A0A2P8Y3M7_A0A2P8Y3M7_BLAGE_6973 are exactly identical! WARNING: Sequences tr_A0A2U4B965_A0A2U4B965_TURTR_9739 and tr_A0A2Y9N1U0_A0A2Y9N1U0_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 443 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/3_mltree/Q6ZMN7.raxml.reduced.phy Alignment comprises 1 partitions and 34 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 34 / 34 Gaps: 4.94 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/3_mltree/Q6ZMN7.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 964 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 34 / 2720 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -69074.290647] Initial branch length optimization [00:00:01 -54121.284640] Model parameter optimization (eps = 10.000000) [00:00:18 -53520.989843] AUTODETECT spr round 1 (radius: 5) [00:01:16 -35350.068023] AUTODETECT spr round 2 (radius: 10) [00:02:21 -25622.481002] AUTODETECT spr round 3 (radius: 15) [00:03:31 -20328.740170] AUTODETECT spr round 4 (radius: 20) [00:04:41 -18122.420890] AUTODETECT spr round 5 (radius: 25) [00:05:54 -16959.487734] SPR radius for FAST iterations: 25 (autodetect) [00:05:54 -16959.487734] Model parameter optimization (eps = 3.000000) [00:06:07 -16919.984314] FAST spr round 1 (radius: 25) [00:07:14 -14130.965253] FAST spr round 2 (radius: 25) [00:08:14 -13953.676706] FAST spr round 3 (radius: 25) [00:09:12 -13869.198772] FAST spr round 4 (radius: 25) [00:10:09 -13714.457797] FAST spr round 5 (radius: 25) [00:11:04 -13690.239396] FAST spr round 6 (radius: 25) [00:11:59 -13690.239343] Model parameter optimization (eps = 1.000000) [00:12:04 -13689.742643] SLOW spr round 1 (radius: 5) [00:13:03 -13688.019003] SLOW spr round 2 (radius: 5) [00:14:03 -13686.402182] SLOW spr round 3 (radius: 5) [00:15:03 -13686.342103] SLOW spr round 4 (radius: 10) [00:16:04 -13683.844037] SLOW spr round 5 (radius: 5) [00:17:12 -13680.910129] SLOW spr round 6 (radius: 5) [00:18:15 -13680.459480] SLOW spr round 7 (radius: 5) [00:19:14 -13680.457484] SLOW spr round 8 (radius: 10) [00:20:15 -13679.769296] SLOW spr round 9 (radius: 5) [00:21:21 -13679.769271] SLOW spr round 10 (radius: 10) [00:22:24 -13678.959089] SLOW spr round 11 (radius: 5) [00:23:29 -13678.957242] SLOW spr round 12 (radius: 10) [00:24:32 -13678.957080] SLOW spr round 13 (radius: 15) [00:25:46 -13676.890188] SLOW spr round 14 (radius: 5) [00:26:55 -13676.889450] SLOW spr round 15 (radius: 10) [00:28:01 -13675.815111] SLOW spr round 16 (radius: 5) [00:29:06 -13675.815084] SLOW spr round 17 (radius: 10) [00:30:08 -13675.815077] SLOW spr round 18 (radius: 15) [00:31:21 -13675.815071] SLOW spr round 19 (radius: 20) [00:32:49 -13674.386802] SLOW spr round 20 (radius: 5) [00:33:59 -13674.231402] SLOW spr round 21 (radius: 5) [00:35:03 -13674.231044] SLOW spr round 22 (radius: 10) [00:36:04 -13674.231024] SLOW spr round 23 (radius: 15) [00:37:18 -13674.231017] SLOW spr round 24 (radius: 20) [00:38:45 -13674.231010] SLOW spr round 25 (radius: 25) [00:40:29 -13664.680078] SLOW spr round 26 (radius: 5) [00:41:39 -13664.679912] SLOW spr round 27 (radius: 10) [00:42:46 -13664.679899] SLOW spr round 28 (radius: 15) [00:43:59 -13664.679891] SLOW spr round 29 (radius: 20) [00:45:26 -13664.679884] SLOW spr round 30 (radius: 25) [00:47:10 -13664.679877] Model parameter optimization (eps = 0.100000) [00:47:13] ML tree search #1, logLikelihood: -13664.653657 [00:47:13 -70008.209335] Initial branch length optimization [00:47:15 -54781.044069] Model parameter optimization (eps = 10.000000) [00:47:35 -54212.980056] AUTODETECT spr round 1 (radius: 5) [00:48:35 -35532.366058] AUTODETECT spr round 2 (radius: 10) [00:49:40 -25780.805121] AUTODETECT spr round 3 (radius: 15) [00:50:53 -20849.887665] AUTODETECT spr round 4 (radius: 20) [00:52:06 -17660.199937] AUTODETECT spr round 5 (radius: 25) [00:53:24 -15479.031159] SPR radius for FAST iterations: 25 (autodetect) [00:53:24 -15479.031159] Model parameter optimization (eps = 3.000000) [00:53:39 -15440.988664] FAST spr round 1 (radius: 25) [00:54:45 -12675.268174] FAST spr round 2 (radius: 25) [00:55:46 -12382.387922] FAST spr round 3 (radius: 25) [00:56:45 -12267.352973] FAST spr round 4 (radius: 25) [00:57:43 -12246.032182] FAST spr round 5 (radius: 25) [00:58:39 -12242.982447] FAST spr round 6 (radius: 25) [00:59:35 -12242.982337] Model parameter optimization (eps = 1.000000) [00:59:40 -12242.138574] SLOW spr round 1 (radius: 5) [01:00:41 -12240.792863] SLOW spr round 2 (radius: 5) [01:01:41 -12240.676879] SLOW spr round 3 (radius: 5) [01:02:40 -12240.521105] SLOW spr round 4 (radius: 5) [01:03:39 -12240.518887] SLOW spr round 5 (radius: 10) [01:04:41 -12168.317775] SLOW spr round 6 (radius: 5) [01:05:49 -12165.147450] SLOW spr round 7 (radius: 5) [01:06:51 -12165.147004] SLOW spr round 8 (radius: 10) [01:07:52 -12165.146857] SLOW spr round 9 (radius: 15) [01:09:07 -12165.146778] SLOW spr round 10 (radius: 20) [01:10:34 -12156.971162] SLOW spr round 11 (radius: 5) [01:11:48 -12132.593531] SLOW spr round 12 (radius: 5) [01:12:53 -12132.342574] SLOW spr round 13 (radius: 5) [01:13:53 -12132.342156] SLOW spr round 14 (radius: 10) [01:14:55 -12132.341604] SLOW spr round 15 (radius: 15) [01:16:08 -12132.340894] SLOW spr round 16 (radius: 20) [01:17:36 -12131.828454] SLOW spr round 17 (radius: 5) [01:18:46 -12131.827211] SLOW spr round 18 (radius: 10) [01:19:53 -12130.194142] SLOW spr round 19 (radius: 5) [01:20:59 -12130.192157] SLOW spr round 20 (radius: 10) [01:22:01 -12130.191880] SLOW spr round 21 (radius: 15) [01:23:14 -12130.191829] SLOW spr round 22 (radius: 20) [01:24:41 -12130.191816] SLOW spr round 23 (radius: 25) [01:26:27 -12130.191798] Model parameter optimization (eps = 0.100000) [01:26:31] ML tree search #2, logLikelihood: -12130.119652 [01:26:31 -69562.473925] Initial branch length optimization [01:26:32 -54241.129510] Model parameter optimization (eps = 10.000000) [01:26:50 -53670.857586] AUTODETECT spr round 1 (radius: 5) [01:27:50 -35942.242494] AUTODETECT spr round 2 (radius: 10) [01:28:57 -25023.940100] AUTODETECT spr round 3 (radius: 15) [01:30:06 -20733.137194] AUTODETECT spr round 4 (radius: 20) [01:31:17 -18439.334076] AUTODETECT spr round 5 (radius: 25) [01:32:32 -17833.596301] SPR radius for FAST iterations: 25 (autodetect) [01:32:32 -17833.596301] Model parameter optimization (eps = 3.000000) [01:32:49 -17817.127137] FAST spr round 1 (radius: 25) [01:33:55 -15555.618133] FAST spr round 2 (radius: 25) [01:34:58 -14404.944509] FAST spr round 3 (radius: 25) [01:35:58 -14136.657683] FAST spr round 4 (radius: 25) [01:36:57 -14098.568838] FAST spr round 5 (radius: 25) [01:37:54 -14096.487280] FAST spr round 6 (radius: 25) [01:38:51 -14096.368213] FAST spr round 7 (radius: 25) [01:39:47 -14096.367951] Model parameter optimization (eps = 1.000000) [01:39:56 -14085.547780] SLOW spr round 1 (radius: 5) [01:40:57 -14082.357208] SLOW spr round 2 (radius: 5) [01:41:59 -14081.787744] SLOW spr round 3 (radius: 5) [01:43:01 -14081.785669] SLOW spr round 4 (radius: 10) [01:44:05 -14078.679522] SLOW spr round 5 (radius: 5) [01:45:15 -14072.043024] SLOW spr round 6 (radius: 5) [01:46:20 -14071.311507] SLOW spr round 7 (radius: 5) [01:47:22 -14071.311427] SLOW spr round 8 (radius: 10) [01:48:24 -14071.311417] SLOW spr round 9 (radius: 15) [01:49:39 -14071.311374] SLOW spr round 10 (radius: 20) [01:51:02 -14061.409693] SLOW spr round 11 (radius: 5) [01:52:16 -14028.042295] SLOW spr round 12 (radius: 5) [01:53:24 -14024.851746] SLOW spr round 13 (radius: 5) [01:54:27 -14024.851439] SLOW spr round 14 (radius: 10) [01:55:29 -14024.199467] SLOW spr round 15 (radius: 5) [01:56:37 -14024.199454] SLOW spr round 16 (radius: 10) [01:57:42 -14024.134559] SLOW spr round 17 (radius: 15) [01:58:56 -14020.004889] SLOW spr round 18 (radius: 5) [02:00:09 -14015.655175] SLOW spr round 19 (radius: 5) [02:01:15 -14013.607110] SLOW spr round 20 (radius: 5) [02:02:17 -14013.606913] SLOW spr round 21 (radius: 10) [02:03:19 -14013.606844] SLOW spr round 22 (radius: 15) [02:04:34 -14012.499381] SLOW spr round 23 (radius: 5) [02:05:44 -14011.634507] SLOW spr round 24 (radius: 5) [02:06:50 -14011.634391] SLOW spr round 25 (radius: 10) [02:07:54 -14007.902594] SLOW spr round 26 (radius: 5) [02:09:03 -14006.289353] SLOW spr round 27 (radius: 5) [02:10:08 -14006.288932] SLOW spr round 28 (radius: 10) [02:11:11 -14006.288886] SLOW spr round 29 (radius: 15) [02:12:26 -14006.288845] SLOW spr round 30 (radius: 20) [02:13:53 -14006.285345] SLOW spr round 31 (radius: 25) [02:15:29 -14006.285308] Model parameter optimization (eps = 0.100000) [02:15:34] ML tree search #3, logLikelihood: -14006.147743 [02:15:34 -69562.050943] Initial branch length optimization [02:15:35 -54116.566139] Model parameter optimization (eps = 10.000000) [02:15:57 -53517.463296] AUTODETECT spr round 1 (radius: 5) [02:16:57 -36528.854600] AUTODETECT spr round 2 (radius: 10) [02:18:03 -26033.410359] AUTODETECT spr round 3 (radius: 15) [02:19:14 -21622.253134] AUTODETECT spr round 4 (radius: 20) [02:20:27 -19736.953065] AUTODETECT spr round 5 (radius: 25) [02:21:46 -18333.878718] SPR radius for FAST iterations: 25 (autodetect) [02:21:46 -18333.878718] Model parameter optimization (eps = 3.000000) [02:22:03 -18293.296345] FAST spr round 1 (radius: 25) [02:23:14 -14091.050639] FAST spr round 2 (radius: 25) [02:24:20 -13457.542415] FAST spr round 3 (radius: 25) [02:25:20 -12951.802313] FAST spr round 4 (radius: 25) [02:26:21 -12636.273017] FAST spr round 5 (radius: 25) [02:27:20 -12556.495213] FAST spr round 6 (radius: 25) [02:28:17 -12537.749768] FAST spr round 7 (radius: 25) [02:29:13 -12537.557634] FAST spr round 8 (radius: 25) [02:30:10 -12537.554253] Model parameter optimization (eps = 1.000000) [02:30:16 -12536.752640] SLOW spr round 1 (radius: 5) [02:31:17 -12529.316841] SLOW spr round 2 (radius: 5) [02:32:20 -12528.799052] SLOW spr round 3 (radius: 5) [02:33:20 -12528.798219] SLOW spr round 4 (radius: 10) [02:34:23 -12518.751242] SLOW spr round 5 (radius: 5) [02:35:32 -12508.619537] SLOW spr round 6 (radius: 5) [02:36:37 -12506.245177] SLOW spr round 7 (radius: 5) [02:37:38 -12506.244307] SLOW spr round 8 (radius: 10) [02:38:40 -12475.689782] SLOW spr round 9 (radius: 5) [02:39:48 -12475.223898] SLOW spr round 10 (radius: 5) [02:40:51 -12475.190875] SLOW spr round 11 (radius: 10) [02:41:53 -12475.189449] SLOW spr round 12 (radius: 15) [02:43:07 -12333.150582] SLOW spr round 13 (radius: 5) [02:44:17 -12333.150310] SLOW spr round 14 (radius: 10) [02:45:24 -12332.580064] SLOW spr round 15 (radius: 5) [02:46:32 -12326.678332] SLOW spr round 16 (radius: 5) [02:47:35 -12325.348657] SLOW spr round 17 (radius: 5) [02:48:35 -12325.348595] SLOW spr round 18 (radius: 10) [02:49:38 -12325.348592] SLOW spr round 19 (radius: 15) [02:50:53 -12325.348580] SLOW spr round 20 (radius: 20) [02:52:18 -12308.956001] SLOW spr round 21 (radius: 5) [02:53:29 -12308.954746] SLOW spr round 22 (radius: 10) [02:54:37 -12308.954664] SLOW spr round 23 (radius: 15) [02:55:49 -12308.857831] SLOW spr round 24 (radius: 20) [02:57:14 -12308.857407] SLOW spr round 25 (radius: 25) [02:58:54 -12291.184112] SLOW spr round 26 (radius: 5) [03:00:06 -12284.988053] SLOW spr round 27 (radius: 5) [03:01:12 -12280.081094] SLOW spr round 28 (radius: 5) [03:02:13 -12279.854275] SLOW spr round 29 (radius: 5) [03:03:13 -12279.853992] SLOW spr round 30 (radius: 10) [03:04:16 -12279.853946] SLOW spr round 31 (radius: 15) [03:05:30 -12279.853921] SLOW spr round 32 (radius: 20) [03:06:55 -12279.853906] SLOW spr round 33 (radius: 25) [03:08:35 -12279.149101] SLOW spr round 34 (radius: 5) [03:09:46 -12279.149091] SLOW spr round 35 (radius: 10) [03:10:53 -12276.192074] SLOW spr round 36 (radius: 5) [03:11:59 -12261.154678] SLOW spr round 37 (radius: 5) [03:13:01 -12261.154675] SLOW spr round 38 (radius: 10) [03:14:03 -12261.154672] SLOW spr round 39 (radius: 15) [03:15:17 -12261.154670] SLOW spr round 40 (radius: 20) [03:16:42 -12261.154666] SLOW spr round 41 (radius: 25) [03:18:22 -12261.154663] Model parameter optimization (eps = 0.100000) [03:18:28] ML tree search #4, logLikelihood: -12259.718968 [03:18:28 -69912.280754] Initial branch length optimization [03:18:29 -54659.849939] Model parameter optimization (eps = 10.000000) [03:18:45 -54114.045018] AUTODETECT spr round 1 (radius: 5) [03:19:44 -36175.959248] AUTODETECT spr round 2 (radius: 10) [03:20:51 -26565.868316] AUTODETECT spr round 3 (radius: 15) [03:22:02 -21705.382964] AUTODETECT spr round 4 (radius: 20) [03:23:16 -19307.978776] AUTODETECT spr round 5 (radius: 25) [03:24:31 -17853.469126] SPR radius for FAST iterations: 25 (autodetect) [03:24:31 -17853.469126] Model parameter optimization (eps = 3.000000) [03:24:48 -17814.145298] FAST spr round 1 (radius: 25) [03:25:57 -14736.360625] FAST spr round 2 (radius: 25) [03:27:01 -14346.972341] FAST spr round 3 (radius: 25) [03:28:01 -14245.776306] FAST spr round 4 (radius: 25) [03:28:59 -14229.361159] FAST spr round 5 (radius: 25) [03:29:56 -14228.047864] FAST spr round 6 (radius: 25) [03:30:52 -14228.047388] Model parameter optimization (eps = 1.000000) [03:30:59 -14225.275050] SLOW spr round 1 (radius: 5) [03:32:02 -14220.398737] SLOW spr round 2 (radius: 5) [03:33:02 -14220.200929] SLOW spr round 3 (radius: 5) [03:34:03 -14220.200795] SLOW spr round 4 (radius: 10) [03:35:06 -14219.338270] SLOW spr round 5 (radius: 5) [03:36:14 -14219.337344] SLOW spr round 6 (radius: 10) [03:37:20 -14215.119419] SLOW spr round 7 (radius: 5) [03:38:27 -14215.119007] SLOW spr round 8 (radius: 10) [03:39:32 -14215.118945] SLOW spr round 9 (radius: 15) [03:40:44 -14214.467321] SLOW spr round 10 (radius: 5) [03:41:54 -14214.467278] SLOW spr round 11 (radius: 10) [03:43:01 -14214.467235] SLOW spr round 12 (radius: 15) [03:44:12 -14214.467192] SLOW spr round 13 (radius: 20) [03:45:33 -14214.018495] SLOW spr round 14 (radius: 5) [03:46:44 -14214.018451] SLOW spr round 15 (radius: 10) [03:47:52 -14214.018408] SLOW spr round 16 (radius: 15) [03:49:03 -14214.018365] SLOW spr round 17 (radius: 20) [03:50:23 -14214.011147] SLOW spr round 18 (radius: 25) [03:51:58 -13903.051983] SLOW spr round 19 (radius: 5) [03:53:11 -13311.276011] SLOW spr round 20 (radius: 5) [03:54:19 -13150.852872] SLOW spr round 21 (radius: 5) [03:55:23 -13028.491758] SLOW spr round 22 (radius: 5) [03:56:25 -12956.720924] SLOW spr round 23 (radius: 5) [03:57:27 -12948.433271] SLOW spr round 24 (radius: 5) [03:58:29 -12948.105120] SLOW spr round 25 (radius: 5) [03:59:30 -12948.103221] SLOW spr round 26 (radius: 10) [04:00:33 -12942.609022] SLOW spr round 27 (radius: 5) [04:01:41 -12942.608361] SLOW spr round 28 (radius: 10) [04:02:48 -12934.162657] SLOW spr round 29 (radius: 5) [04:03:57 -12841.729894] SLOW spr round 30 (radius: 5) [04:05:02 -12839.012405] SLOW spr round 31 (radius: 5) [04:06:04 -12838.515704] SLOW spr round 32 (radius: 5) [04:07:04 -12838.514518] SLOW spr round 33 (radius: 10) [04:08:08 -12836.810379] SLOW spr round 34 (radius: 5) [04:09:18 -12834.023834] SLOW spr round 35 (radius: 5) [04:10:21 -12834.023359] SLOW spr round 36 (radius: 10) [04:11:25 -12830.465618] SLOW spr round 37 (radius: 5) [04:12:35 -12829.798912] SLOW spr round 38 (radius: 5) [04:13:38 -12829.795602] SLOW spr round 39 (radius: 10) [04:14:41 -12829.786034] SLOW spr round 40 (radius: 15) [04:15:54 -12811.110111] SLOW spr round 41 (radius: 5) [04:17:06 -12796.531062] SLOW spr round 42 (radius: 5) [04:18:11 -12794.151409] SLOW spr round 43 (radius: 5) [04:19:12 -12794.143587] SLOW spr round 44 (radius: 10) [04:20:15 -12794.143176] SLOW spr round 45 (radius: 15) [04:21:27 -12794.124256] SLOW spr round 46 (radius: 20) [04:22:46 -12792.179170] SLOW spr round 47 (radius: 5) [04:23:57 -12792.176234] SLOW spr round 48 (radius: 10) [04:25:04 -12792.176199] SLOW spr round 49 (radius: 15) [04:26:15 -12792.176176] SLOW spr round 50 (radius: 20) [04:27:35 -12792.176159] SLOW spr round 51 (radius: 25) [04:29:04 -12791.655904] SLOW spr round 52 (radius: 5) [04:30:15 -12791.655747] SLOW spr round 53 (radius: 10) [04:31:23 -12790.730645] SLOW spr round 54 (radius: 5) [04:32:30 -12790.730630] SLOW spr round 55 (radius: 10) [04:33:34 -12790.730626] SLOW spr round 56 (radius: 15) [04:34:45 -12790.730623] SLOW spr round 57 (radius: 20) [04:36:05 -12790.727846] SLOW spr round 58 (radius: 25) [04:37:34 -12790.727842] Model parameter optimization (eps = 0.100000) [04:37:40] ML tree search #5, logLikelihood: -12790.461178 [04:37:40 -69193.462735] Initial branch length optimization [04:37:41 -54145.529387] Model parameter optimization (eps = 10.000000) [04:37:59 -53553.033981] AUTODETECT spr round 1 (radius: 5) [04:38:59 -35768.160968] AUTODETECT spr round 2 (radius: 10) [04:40:05 -26144.052339] AUTODETECT spr round 3 (radius: 15) [04:41:20 -20935.771291] AUTODETECT spr round 4 (radius: 20) [04:42:33 -18675.343342] AUTODETECT spr round 5 (radius: 25) [04:43:59 -16649.168795] SPR radius for FAST iterations: 25 (autodetect) [04:43:59 -16649.168795] Model parameter optimization (eps = 3.000000) [04:44:18 -16625.713327] FAST spr round 1 (radius: 25) [04:45:26 -13377.415431] FAST spr round 2 (radius: 25) [04:46:27 -12897.682509] FAST spr round 3 (radius: 25) [04:47:26 -12847.017829] FAST spr round 4 (radius: 25) [04:48:24 -12812.996313] FAST spr round 5 (radius: 25) [04:49:20 -12810.999167] FAST spr round 6 (radius: 25) [04:50:16 -12810.998799] Model parameter optimization (eps = 1.000000) [04:50:25 -12809.774456] SLOW spr round 1 (radius: 5) [04:51:26 -12805.628002] SLOW spr round 2 (radius: 5) [04:52:27 -12802.378233] SLOW spr round 3 (radius: 5) [04:53:28 -12800.617334] SLOW spr round 4 (radius: 5) [04:54:27 -12800.616600] SLOW spr round 5 (radius: 10) [04:55:30 -12798.171613] SLOW spr round 6 (radius: 5) [04:56:37 -12798.166101] SLOW spr round 7 (radius: 10) [04:57:42 -12796.391222] SLOW spr round 8 (radius: 5) [04:58:49 -12796.260412] SLOW spr round 9 (radius: 5) [04:59:51 -12796.186613] SLOW spr round 10 (radius: 10) [05:00:53 -12796.186432] SLOW spr round 11 (radius: 15) [05:02:05 -12794.348142] SLOW spr round 12 (radius: 5) [05:03:15 -12793.456267] SLOW spr round 13 (radius: 5) [05:04:21 -12790.972400] SLOW spr round 14 (radius: 5) [05:05:23 -12788.884564] SLOW spr round 15 (radius: 5) [05:06:24 -12788.836067] SLOW spr round 16 (radius: 10) [05:07:26 -12787.755222] SLOW spr round 17 (radius: 5) [05:08:33 -12787.046441] SLOW spr round 18 (radius: 5) [05:09:35 -12787.046130] SLOW spr round 19 (radius: 10) [05:10:37 -12787.046047] SLOW spr round 20 (radius: 15) [05:11:49 -12787.045968] SLOW spr round 21 (radius: 20) [05:13:12 -12778.808965] SLOW spr round 22 (radius: 5) [05:14:24 -12777.165321] SLOW spr round 23 (radius: 5) [05:15:28 -12777.155490] SLOW spr round 24 (radius: 10) [05:16:31 -12775.593940] SLOW spr round 25 (radius: 5) [05:17:38 -12775.459031] SLOW spr round 26 (radius: 5) [05:18:41 -12775.457618] SLOW spr round 27 (radius: 10) [05:19:43 -12775.457595] SLOW spr round 28 (radius: 15) [05:20:55 -12775.449991] SLOW spr round 29 (radius: 20) [05:22:17 -12774.450017] SLOW spr round 30 (radius: 5) [05:23:28 -12774.447684] SLOW spr round 31 (radius: 10) [05:24:35 -12774.447674] SLOW spr round 32 (radius: 15) [05:25:45 -12774.447672] SLOW spr round 33 (radius: 20) [05:27:08 -12774.447670] SLOW spr round 34 (radius: 25) [05:28:43 -12709.053781] SLOW spr round 35 (radius: 5) [05:29:55 -12684.760021] SLOW spr round 36 (radius: 5) [05:31:01 -12682.176448] SLOW spr round 37 (radius: 5) [05:32:02 -12682.176397] SLOW spr round 38 (radius: 10) [05:33:03 -12680.509498] SLOW spr round 39 (radius: 5) [05:34:10 -12680.509005] SLOW spr round 40 (radius: 10) [05:35:14 -12680.509001] SLOW spr round 41 (radius: 15) [05:36:25 -12680.508999] SLOW spr round 42 (radius: 20) [05:37:47 -12680.508998] SLOW spr round 43 (radius: 25) [05:39:19 -12680.508996] Model parameter optimization (eps = 0.100000) [05:39:29] ML tree search #6, logLikelihood: -12679.338661 [05:39:29 -68574.311798] Initial branch length optimization [05:39:30 -53827.504490] Model parameter optimization (eps = 10.000000) [05:39:43 -53274.581371] AUTODETECT spr round 1 (radius: 5) [05:40:43 -35863.349369] AUTODETECT spr round 2 (radius: 10) [05:41:49 -25931.571180] AUTODETECT spr round 3 (radius: 15) [05:42:59 -20887.151890] AUTODETECT spr round 4 (radius: 20) [05:44:17 -18027.508006] AUTODETECT spr round 5 (radius: 25) [05:45:39 -17201.026826] SPR radius for FAST iterations: 25 (autodetect) [05:45:39 -17201.026826] Model parameter optimization (eps = 3.000000) [05:45:53 -17166.140929] FAST spr round 1 (radius: 25) [05:46:59 -14714.663842] FAST spr round 2 (radius: 25) [05:47:59 -13904.978575] FAST spr round 3 (radius: 25) [05:48:58 -13842.066706] FAST spr round 4 (radius: 25) [05:49:55 -13837.122621] FAST spr round 5 (radius: 25) [05:50:52 -13837.121179] Model parameter optimization (eps = 1.000000) [05:51:03 -13835.550728] SLOW spr round 1 (radius: 5) [05:52:04 -13832.154999] SLOW spr round 2 (radius: 5) [05:53:05 -13831.753231] SLOW spr round 3 (radius: 5) [05:54:06 -13831.752457] SLOW spr round 4 (radius: 10) [05:55:09 -13831.347409] SLOW spr round 5 (radius: 5) [05:56:18 -13829.631064] SLOW spr round 6 (radius: 5) [05:57:20 -13829.630896] SLOW spr round 7 (radius: 10) [05:58:24 -13829.598575] SLOW spr round 8 (radius: 15) [05:59:36 -13829.598517] SLOW spr round 9 (radius: 20) [06:00:56 -13824.990860] SLOW spr round 10 (radius: 5) [06:02:09 -13824.644587] SLOW spr round 11 (radius: 5) [06:03:16 -13823.328078] SLOW spr round 12 (radius: 5) [06:04:18 -13823.327808] SLOW spr round 13 (radius: 10) [06:05:21 -13823.327739] SLOW spr round 14 (radius: 15) [06:06:35 -13822.055598] SLOW spr round 15 (radius: 5) [06:07:46 -13817.801063] SLOW spr round 16 (radius: 5) [06:08:51 -13816.765042] SLOW spr round 17 (radius: 5) [06:09:53 -13816.764950] SLOW spr round 18 (radius: 10) [06:10:56 -13815.986176] SLOW spr round 19 (radius: 5) [06:12:04 -13814.871555] SLOW spr round 20 (radius: 5) [06:13:07 -13814.871259] SLOW spr round 21 (radius: 10) [06:14:11 -13814.871232] SLOW spr round 22 (radius: 15) [06:15:24 -13814.871228] SLOW spr round 23 (radius: 20) [06:16:50 -13791.216340] SLOW spr round 24 (radius: 5) [06:18:03 -13752.719513] SLOW spr round 25 (radius: 5) [06:19:09 -13745.502181] SLOW spr round 26 (radius: 5) [06:20:11 -13745.502163] SLOW spr round 27 (radius: 10) [06:21:14 -13745.502154] SLOW spr round 28 (radius: 15) [06:22:28 -13745.502149] SLOW spr round 29 (radius: 20) [06:23:51 -13745.502146] SLOW spr round 30 (radius: 25) [06:25:28 -13737.833039] SLOW spr round 31 (radius: 5) [06:26:41 -13736.576909] SLOW spr round 32 (radius: 5) [06:27:47 -13736.576148] SLOW spr round 33 (radius: 10) [06:28:50 -13735.576368] SLOW spr round 34 (radius: 5) [06:29:57 -13734.512430] SLOW spr round 35 (radius: 5) [06:30:59 -13734.512421] SLOW spr round 36 (radius: 10) [06:32:02 -13734.512416] SLOW spr round 37 (radius: 15) [06:33:16 -13734.408667] SLOW spr round 38 (radius: 5) [06:34:26 -13734.408457] SLOW spr round 39 (radius: 10) [06:35:34 -13731.183848] SLOW spr round 40 (radius: 5) [06:36:40 -13731.183645] SLOW spr round 41 (radius: 10) [06:37:45 -13731.183496] SLOW spr round 42 (radius: 15) [06:39:00 -13731.166498] SLOW spr round 43 (radius: 20) [06:40:26 -13726.805499] SLOW spr round 44 (radius: 5) [06:41:37 -13726.805499] SLOW spr round 45 (radius: 10) [06:42:44 -13725.502477] SLOW spr round 46 (radius: 5) [06:43:51 -13725.500603] SLOW spr round 47 (radius: 10) [06:44:56 -13724.363518] SLOW spr round 48 (radius: 5) [06:46:03 -13724.362366] SLOW spr round 49 (radius: 10) [06:47:07 -13724.362262] SLOW spr round 50 (radius: 15) [06:48:21 -13723.510192] SLOW spr round 51 (radius: 5) [06:49:31 -13723.509779] SLOW spr round 52 (radius: 10) [06:50:38 -13723.509758] SLOW spr round 53 (radius: 15) [06:51:51 -13723.509751] SLOW spr round 54 (radius: 20) [06:53:16 -13723.509750] SLOW spr round 55 (radius: 25) [06:54:50 -13723.505524] Model parameter optimization (eps = 0.100000) [06:54:59] ML tree search #7, logLikelihood: -13722.887304 [06:54:59 -69575.279947] Initial branch length optimization [06:55:00 -53977.141577] Model parameter optimization (eps = 10.000000) [06:55:18 -53444.598361] AUTODETECT spr round 1 (radius: 5) [06:56:19 -35127.446316] AUTODETECT spr round 2 (radius: 10) [06:57:25 -23980.196892] AUTODETECT spr round 3 (radius: 15) [06:58:33 -19464.494245] AUTODETECT spr round 4 (radius: 20) [06:59:44 -17175.360226] AUTODETECT spr round 5 (radius: 25) [07:01:02 -15766.630573] SPR radius for FAST iterations: 25 (autodetect) [07:01:02 -15766.630573] Model parameter optimization (eps = 3.000000) [07:01:19 -15738.351200] FAST spr round 1 (radius: 25) [07:02:29 -12808.413077] FAST spr round 2 (radius: 25) [07:03:31 -12621.477049] FAST spr round 3 (radius: 25) [07:04:30 -12608.608644] FAST spr round 4 (radius: 25) [07:05:27 -12608.575155] Model parameter optimization (eps = 1.000000) [07:05:37 -12607.166483] SLOW spr round 1 (radius: 5) [07:06:39 -12605.370934] SLOW spr round 2 (radius: 5) [07:07:40 -12605.053792] SLOW spr round 3 (radius: 5) [07:08:40 -12605.053155] SLOW spr round 4 (radius: 10) [07:09:42 -12603.554617] SLOW spr round 5 (radius: 5) [07:10:50 -12603.552872] SLOW spr round 6 (radius: 10) [07:11:55 -12599.273231] SLOW spr round 7 (radius: 5) [07:13:02 -12596.216884] SLOW spr round 8 (radius: 5) [07:14:06 -12595.926239] SLOW spr round 9 (radius: 5) [07:15:07 -12595.926181] SLOW spr round 10 (radius: 10) [07:16:09 -12595.926134] SLOW spr round 11 (radius: 15) [07:17:22 -12595.741142] SLOW spr round 12 (radius: 5) [07:18:33 -12595.739155] SLOW spr round 13 (radius: 10) [07:19:39 -12595.738641] SLOW spr round 14 (radius: 15) [07:20:51 -12595.738489] SLOW spr round 15 (radius: 20) [07:22:15 -12592.904228] SLOW spr round 16 (radius: 5) [07:23:26 -12591.486775] SLOW spr round 17 (radius: 5) [07:24:30 -12591.486642] SLOW spr round 18 (radius: 10) [07:25:33 -12591.486563] SLOW spr round 19 (radius: 15) [07:26:46 -12590.145641] SLOW spr round 20 (radius: 5) [07:27:55 -12590.145589] SLOW spr round 21 (radius: 10) [07:29:02 -12590.145551] SLOW spr round 22 (radius: 15) [07:30:12 -12590.145518] SLOW spr round 23 (radius: 20) [07:31:34 -12590.145488] SLOW spr round 24 (radius: 25) [07:33:07 -12589.168135] SLOW spr round 25 (radius: 5) [07:34:19 -12589.082999] SLOW spr round 26 (radius: 10) [07:35:26 -12589.082882] SLOW spr round 27 (radius: 15) [07:36:37 -12588.263839] SLOW spr round 28 (radius: 5) [07:37:46 -12588.263808] SLOW spr round 29 (radius: 10) [07:38:53 -12588.263789] SLOW spr round 30 (radius: 15) [07:40:03 -12588.263769] SLOW spr round 31 (radius: 20) [07:41:25 -12535.940668] SLOW spr round 32 (radius: 5) [07:42:37 -12535.464880] SLOW spr round 33 (radius: 5) [07:43:42 -12535.313987] SLOW spr round 34 (radius: 5) [07:44:44 -12535.313966] SLOW spr round 35 (radius: 10) [07:45:47 -12535.313947] SLOW spr round 36 (radius: 15) [07:46:59 -12535.313928] SLOW spr round 37 (radius: 20) [07:48:21 -12535.313909] SLOW spr round 38 (radius: 25) [07:49:53 -12535.313637] Model parameter optimization (eps = 0.100000) [07:50:02] ML tree search #8, logLikelihood: -12535.061600 [07:50:02 -69511.863408] Initial branch length optimization [07:50:03 -54532.791660] Model parameter optimization (eps = 10.000000) [07:50:23 -53980.113497] AUTODETECT spr round 1 (radius: 5) [07:51:23 -35937.532182] AUTODETECT spr round 2 (radius: 10) [07:52:30 -25982.147379] AUTODETECT spr round 3 (radius: 15) [07:53:42 -20659.444023] AUTODETECT spr round 4 (radius: 20) [07:54:56 -18118.804001] AUTODETECT spr round 5 (radius: 25) [07:56:17 -17087.857001] SPR radius for FAST iterations: 25 (autodetect) [07:56:17 -17087.857001] Model parameter optimization (eps = 3.000000) [07:56:43 -17026.402913] FAST spr round 1 (radius: 25) [07:57:49 -14568.513944] FAST spr round 2 (radius: 25) [07:58:51 -14261.876215] FAST spr round 3 (radius: 25) [07:59:52 -14065.994983] FAST spr round 4 (radius: 25) [08:00:51 -13959.924675] FAST spr round 5 (radius: 25) [08:01:51 -13605.198690] FAST spr round 6 (radius: 25) [08:02:52 -13471.778032] FAST spr round 7 (radius: 25) [08:03:52 -13336.161699] FAST spr round 8 (radius: 25) [08:04:52 -13261.828765] FAST spr round 9 (radius: 25) [08:05:51 -13247.705808] FAST spr round 10 (radius: 25) [08:06:49 -13247.705251] Model parameter optimization (eps = 1.000000) [08:06:52 -13247.057438] SLOW spr round 1 (radius: 5) [08:07:54 -13243.051685] SLOW spr round 2 (radius: 5) [08:08:56 -13242.288728] SLOW spr round 3 (radius: 5) [08:09:58 -13241.243435] SLOW spr round 4 (radius: 5) [08:10:59 -13241.243289] SLOW spr round 5 (radius: 10) [08:12:04 -13230.759782] SLOW spr round 6 (radius: 5) [08:13:13 -13228.884032] SLOW spr round 7 (radius: 5) [08:14:16 -13228.882469] SLOW spr round 8 (radius: 10) [08:15:21 -13227.501137] SLOW spr round 9 (radius: 5) [08:16:30 -13227.239122] SLOW spr round 10 (radius: 5) [08:17:33 -13227.237558] SLOW spr round 11 (radius: 10) [08:18:36 -13227.236675] SLOW spr round 12 (radius: 15) [08:19:50 -13224.037042] SLOW spr round 13 (radius: 5) [08:21:00 -13212.731945] SLOW spr round 14 (radius: 5) [08:22:07 -13208.510883] SLOW spr round 15 (radius: 5) [08:23:10 -13208.250909] SLOW spr round 16 (radius: 5) [08:24:11 -13208.250165] SLOW spr round 17 (radius: 10) [08:25:14 -13207.103792] SLOW spr round 18 (radius: 5) [08:26:22 -13207.102360] SLOW spr round 19 (radius: 10) [08:27:27 -13207.102199] SLOW spr round 20 (radius: 15) [08:28:43 -13193.996960] SLOW spr round 21 (radius: 5) [08:29:54 -13189.070699] SLOW spr round 22 (radius: 5) [08:31:00 -13188.787641] SLOW spr round 23 (radius: 5) [08:32:02 -13188.786747] SLOW spr round 24 (radius: 10) [08:33:06 -13187.739427] SLOW spr round 25 (radius: 5) [08:34:15 -13186.897161] SLOW spr round 26 (radius: 5) [08:35:18 -13186.896479] SLOW spr round 27 (radius: 10) [08:36:21 -13186.895660] SLOW spr round 28 (radius: 15) [08:37:37 -13183.873251] SLOW spr round 29 (radius: 5) [08:38:46 -13183.873150] SLOW spr round 30 (radius: 10) [08:39:54 -13183.873143] SLOW spr round 31 (radius: 15) [08:41:08 -13183.873138] SLOW spr round 32 (radius: 20) [08:42:37 -13156.225398] SLOW spr round 33 (radius: 5) [08:43:50 -13105.866924] SLOW spr round 34 (radius: 5) [08:44:56 -13105.500041] SLOW spr round 35 (radius: 5) [08:45:58 -13105.498908] SLOW spr round 36 (radius: 10) [08:47:01 -13105.498858] SLOW spr round 37 (radius: 15) [08:48:16 -13105.498849] SLOW spr round 38 (radius: 20) [08:49:43 -13105.498826] SLOW spr round 39 (radius: 25) [08:51:19 -13103.749561] SLOW spr round 40 (radius: 5) [08:52:32 -13099.305735] SLOW spr round 41 (radius: 5) [08:53:39 -13098.968537] SLOW spr round 42 (radius: 5) [08:54:40 -13098.968523] SLOW spr round 43 (radius: 10) [08:55:44 -13098.968517] SLOW spr round 44 (radius: 15) [08:56:59 -13098.968512] SLOW spr round 45 (radius: 20) [08:58:26 -13098.968508] SLOW spr round 46 (radius: 25) [09:00:03 -13098.968503] Model parameter optimization (eps = 0.100000) [09:00:12] ML tree search #9, logLikelihood: -13098.040107 [09:00:12 -69634.127469] Initial branch length optimization [09:00:13 -54220.312368] Model parameter optimization (eps = 10.000000) [09:00:29 -53662.309477] AUTODETECT spr round 1 (radius: 5) [09:01:29 -36063.692937] AUTODETECT spr round 2 (radius: 10) [09:02:35 -26726.467978] AUTODETECT spr round 3 (radius: 15) [09:03:47 -22123.202104] AUTODETECT spr round 4 (radius: 20) [09:05:00 -19788.128802] AUTODETECT spr round 5 (radius: 25) [09:06:18 -18963.622690] SPR radius for FAST iterations: 25 (autodetect) [09:06:18 -18963.622690] Model parameter optimization (eps = 3.000000) [09:06:31 -18949.079114] FAST spr round 1 (radius: 25) [09:07:40 -15142.131805] FAST spr round 2 (radius: 25) [09:08:42 -14073.281517] FAST spr round 3 (radius: 25) [09:09:42 -13827.009117] FAST spr round 4 (radius: 25) [09:10:41 -13813.820968] FAST spr round 5 (radius: 25) [09:11:38 -13810.023037] FAST spr round 6 (radius: 25) [09:12:34 -13810.022000] Model parameter optimization (eps = 1.000000) [09:12:48 -13806.072528] SLOW spr round 1 (radius: 5) [09:13:49 -13802.866630] SLOW spr round 2 (radius: 5) [09:14:50 -13802.866333] SLOW spr round 3 (radius: 10) [09:15:54 -13798.835291] SLOW spr round 4 (radius: 5) [09:17:03 -13797.464939] SLOW spr round 5 (radius: 5) [09:18:07 -13797.464763] SLOW spr round 6 (radius: 10) [09:19:11 -13796.395099] SLOW spr round 7 (radius: 5) [09:20:20 -13791.662860] SLOW spr round 8 (radius: 5) [09:21:23 -13791.662727] SLOW spr round 9 (radius: 10) [09:22:30 -13760.294866] SLOW spr round 10 (radius: 5) [09:23:39 -13611.739249] SLOW spr round 11 (radius: 5) [09:24:44 -13592.784280] SLOW spr round 12 (radius: 5) [09:25:46 -13555.784250] SLOW spr round 13 (radius: 5) [09:26:48 -13549.610914] SLOW spr round 14 (radius: 5) [09:27:50 -13549.610455] SLOW spr round 15 (radius: 10) [09:28:54 -13549.610387] SLOW spr round 16 (radius: 15) [09:30:08 -12998.796908] SLOW spr round 17 (radius: 5) [09:31:19 -12462.810192] SLOW spr round 18 (radius: 5) [09:32:25 -12291.681483] SLOW spr round 19 (radius: 5) [09:33:28 -12284.278311] SLOW spr round 20 (radius: 5) [09:34:30 -12282.262272] SLOW spr round 21 (radius: 5) [09:35:31 -12281.837202] SLOW spr round 22 (radius: 5) [09:36:33 -12281.836886] SLOW spr round 23 (radius: 10) [09:37:37 -12273.899257] SLOW spr round 24 (radius: 5) [09:38:45 -12270.621496] SLOW spr round 25 (radius: 5) [09:39:46 -12270.621466] SLOW spr round 26 (radius: 10) [09:40:49 -12270.621452] SLOW spr round 27 (radius: 15) [09:42:04 -12153.314985] SLOW spr round 28 (radius: 5) [09:43:15 -12152.582705] SLOW spr round 29 (radius: 5) [09:44:19 -12152.568296] SLOW spr round 30 (radius: 10) [09:45:23 -12150.391554] SLOW spr round 31 (radius: 5) [09:46:29 -12150.390695] SLOW spr round 32 (radius: 10) [09:47:33 -12148.925183] SLOW spr round 33 (radius: 5) [09:48:39 -12148.924856] SLOW spr round 34 (radius: 10) [09:49:42 -12148.924786] SLOW spr round 35 (radius: 15) [09:50:55 -12148.837223] SLOW spr round 36 (radius: 20) [09:52:24 -12147.209572] SLOW spr round 37 (radius: 5) [09:53:35 -12146.648408] SLOW spr round 38 (radius: 5) [09:54:39 -12146.648327] SLOW spr round 39 (radius: 10) [09:55:42 -12146.648282] SLOW spr round 40 (radius: 15) [09:56:56 -12145.810896] SLOW spr round 41 (radius: 5) [09:58:05 -12145.810446] SLOW spr round 42 (radius: 10) [09:59:11 -12145.764824] SLOW spr round 43 (radius: 15) [10:00:24 -12145.764775] SLOW spr round 44 (radius: 20) [10:01:56 -12145.764733] SLOW spr round 45 (radius: 25) [10:03:46 -12128.747897] SLOW spr round 46 (radius: 5) [10:04:58 -12126.748470] SLOW spr round 47 (radius: 5) [10:06:04 -12124.891692] SLOW spr round 48 (radius: 5) [10:07:06 -12124.891584] SLOW spr round 49 (radius: 10) [10:08:08 -12124.658556] SLOW spr round 50 (radius: 5) [10:09:15 -12124.658357] SLOW spr round 51 (radius: 10) [10:10:19 -12124.658290] SLOW spr round 52 (radius: 15) [10:11:34 -12122.557553] SLOW spr round 53 (radius: 5) [10:12:44 -12122.557486] SLOW spr round 54 (radius: 10) [10:13:50 -12122.557419] SLOW spr round 55 (radius: 15) [10:15:04 -12122.557355] SLOW spr round 56 (radius: 20) [10:16:38 -12105.103566] SLOW spr round 57 (radius: 5) [10:17:49 -12103.921517] SLOW spr round 58 (radius: 5) [10:18:55 -12102.512821] SLOW spr round 59 (radius: 5) [10:19:56 -12102.512660] SLOW spr round 60 (radius: 10) [10:20:58 -12102.512658] SLOW spr round 61 (radius: 15) [10:22:13 -12102.512656] SLOW spr round 62 (radius: 20) [10:23:46 -12102.512655] SLOW spr round 63 (radius: 25) [10:25:34 -12102.512653] Model parameter optimization (eps = 0.100000) [10:25:43] ML tree search #10, logLikelihood: -12101.144593 [10:25:43 -69643.824422] Initial branch length optimization [10:25:44 -54064.295609] Model parameter optimization (eps = 10.000000) [10:26:02 -53459.369945] AUTODETECT spr round 1 (radius: 5) [10:27:01 -36227.311388] AUTODETECT spr round 2 (radius: 10) [10:28:08 -24944.773311] AUTODETECT spr round 3 (radius: 15) [10:29:17 -20662.897801] AUTODETECT spr round 4 (radius: 20) [10:30:31 -17704.163960] AUTODETECT spr round 5 (radius: 25) [10:31:51 -16009.918799] SPR radius for FAST iterations: 25 (autodetect) [10:31:51 -16009.918799] Model parameter optimization (eps = 3.000000) [10:32:04 -15967.385700] FAST spr round 1 (radius: 25) [10:33:10 -13003.967934] FAST spr round 2 (radius: 25) [10:34:10 -12626.365651] FAST spr round 3 (radius: 25) [10:35:08 -12591.916753] FAST spr round 4 (radius: 25) [10:36:04 -12589.140121] FAST spr round 5 (radius: 25) [10:37:01 -12589.115497] Model parameter optimization (eps = 1.000000) [10:37:10 -12587.120144] SLOW spr round 1 (radius: 5) [10:38:10 -12581.926590] SLOW spr round 2 (radius: 5) [10:39:10 -12580.587776] SLOW spr round 3 (radius: 5) [10:40:09 -12580.587005] SLOW spr round 4 (radius: 10) [10:41:11 -12580.557873] SLOW spr round 5 (radius: 15) [10:42:23 -12579.223415] SLOW spr round 6 (radius: 5) [10:43:34 -12576.622191] SLOW spr round 7 (radius: 5) [10:44:39 -12575.673203] SLOW spr round 8 (radius: 5) [10:45:40 -12575.560191] SLOW spr round 9 (radius: 5) [10:46:39 -12575.559842] SLOW spr round 10 (radius: 10) [10:47:41 -12575.559806] SLOW spr round 11 (radius: 15) [10:48:53 -12573.794144] SLOW spr round 12 (radius: 5) [10:50:02 -12573.708928] SLOW spr round 13 (radius: 10) [10:51:08 -12573.203609] SLOW spr round 14 (radius: 5) [10:52:14 -12572.949553] SLOW spr round 15 (radius: 5) [10:53:15 -12572.948873] SLOW spr round 16 (radius: 10) [10:54:16 -12572.948861] SLOW spr round 17 (radius: 15) [10:55:27 -12572.948856] SLOW spr round 18 (radius: 20) [10:56:47 -12565.355380] SLOW spr round 19 (radius: 5) [10:57:58 -12563.278597] SLOW spr round 20 (radius: 5) [10:59:03 -12563.171764] SLOW spr round 21 (radius: 5) [11:00:03 -12563.171387] SLOW spr round 22 (radius: 10) [11:01:04 -12562.210971] SLOW spr round 23 (radius: 5) [11:02:10 -12561.760702] SLOW spr round 24 (radius: 5) [11:03:11 -12561.027958] SLOW spr round 25 (radius: 5) [11:04:11 -12561.027623] SLOW spr round 26 (radius: 10) [11:05:12 -12561.027578] SLOW spr round 27 (radius: 15) [11:06:23 -12561.027569] SLOW spr round 28 (radius: 20) [11:07:42 -12561.027566] SLOW spr round 29 (radius: 25) [11:09:11 -12559.484032] SLOW spr round 30 (radius: 5) [11:10:23 -12557.817775] SLOW spr round 31 (radius: 5) [11:11:27 -12557.816068] SLOW spr round 32 (radius: 10) [11:12:29 -12557.816019] SLOW spr round 33 (radius: 15) [11:13:39 -12557.816017] SLOW spr round 34 (radius: 20) [11:14:58 -12557.816016] SLOW spr round 35 (radius: 25) [11:16:28 -12557.816014] Model parameter optimization (eps = 0.100000) [11:16:34] ML tree search #11, logLikelihood: -12557.601191 [11:16:34 -70097.972314] Initial branch length optimization [11:16:35 -54444.888738] Model parameter optimization (eps = 10.000000) [11:16:51 -53808.438184] AUTODETECT spr round 1 (radius: 5) [11:17:51 -36092.731415] AUTODETECT spr round 2 (radius: 10) [11:18:58 -26365.878012] AUTODETECT spr round 3 (radius: 15) [11:20:15 -20699.450170] AUTODETECT spr round 4 (radius: 20) [11:21:32 -17439.625977] AUTODETECT spr round 5 (radius: 25) [11:22:52 -15696.904021] SPR radius for FAST iterations: 25 (autodetect) [11:22:52 -15696.904021] Model parameter optimization (eps = 3.000000) [11:23:05 -15675.555915] FAST spr round 1 (radius: 25) [11:24:12 -13092.608017] FAST spr round 2 (radius: 25) [11:25:13 -12772.379075] FAST spr round 3 (radius: 25) [11:26:13 -12652.103976] FAST spr round 4 (radius: 25) [11:27:14 -12509.082115] FAST spr round 5 (radius: 25) [11:28:13 -12360.479641] FAST spr round 6 (radius: 25) [11:29:10 -12356.125408] FAST spr round 7 (radius: 25) [11:30:07 -12356.124876] Model parameter optimization (eps = 1.000000) [11:30:15 -12353.290090] SLOW spr round 1 (radius: 5) [11:31:17 -12344.679331] SLOW spr round 2 (radius: 5) [11:32:18 -12341.450165] SLOW spr round 3 (radius: 5) [11:33:19 -12341.242689] SLOW spr round 4 (radius: 5) [11:34:19 -12340.426635] SLOW spr round 5 (radius: 5) [11:35:19 -12340.426556] SLOW spr round 6 (radius: 10) [11:36:22 -12336.550670] SLOW spr round 7 (radius: 5) [11:37:30 -12333.031978] SLOW spr round 8 (radius: 5) [11:38:32 -12333.031005] SLOW spr round 9 (radius: 10) [11:39:35 -12329.511326] SLOW spr round 10 (radius: 5) [11:40:42 -12329.511138] SLOW spr round 11 (radius: 10) [11:41:46 -12320.678974] SLOW spr round 12 (radius: 5) [11:42:54 -12317.529215] SLOW spr round 13 (radius: 5) [11:43:57 -12316.611573] SLOW spr round 14 (radius: 5) [11:44:58 -12316.607857] SLOW spr round 15 (radius: 10) [11:46:01 -12316.604128] SLOW spr round 16 (radius: 15) [11:47:16 -12300.051568] SLOW spr round 17 (radius: 5) [11:48:26 -12290.662923] SLOW spr round 18 (radius: 5) [11:49:30 -12290.661533] SLOW spr round 19 (radius: 10) [11:50:33 -12290.510317] SLOW spr round 20 (radius: 5) [11:51:39 -12290.508835] SLOW spr round 21 (radius: 10) [11:52:43 -12290.508673] SLOW spr round 22 (radius: 15) [11:53:56 -12288.712438] SLOW spr round 23 (radius: 5) [11:55:06 -12286.746473] SLOW spr round 24 (radius: 5) [11:56:10 -12286.745618] SLOW spr round 25 (radius: 10) [11:57:13 -12286.745586] SLOW spr round 26 (radius: 15) [11:58:26 -12286.745581] SLOW spr round 27 (radius: 20) [11:59:55 -12284.693770] SLOW spr round 28 (radius: 5) [12:01:06 -12284.693713] SLOW spr round 29 (radius: 10) [12:02:13 -12284.693705] SLOW spr round 30 (radius: 15) [12:03:25 -12284.693701] SLOW spr round 31 (radius: 20) [12:04:52 -12281.575934] SLOW spr round 32 (radius: 5) [12:06:02 -12281.575623] SLOW spr round 33 (radius: 10) [12:07:09 -12281.575612] SLOW spr round 34 (radius: 15) [12:08:21 -12281.575608] SLOW spr round 35 (radius: 20) [12:09:47 -12281.575605] SLOW spr round 36 (radius: 25) [12:11:20 -12280.835988] SLOW spr round 37 (radius: 5) [12:12:31 -12280.835985] SLOW spr round 38 (radius: 10) [12:13:38 -12278.452735] SLOW spr round 39 (radius: 5) [12:14:44 -12278.452732] SLOW spr round 40 (radius: 10) [12:15:46 -12278.452729] SLOW spr round 41 (radius: 15) [12:16:59 -12278.452725] SLOW spr round 42 (radius: 20) [12:18:25 -12278.452722] SLOW spr round 43 (radius: 25) [12:19:59 -12278.452719] Model parameter optimization (eps = 0.100000) [12:20:05] ML tree search #12, logLikelihood: -12278.264922 [12:20:05 -69673.713627] Initial branch length optimization [12:20:06 -54438.012072] Model parameter optimization (eps = 10.000000) [12:20:20 -53806.500370] AUTODETECT spr round 1 (radius: 5) [12:21:20 -34614.109640] AUTODETECT spr round 2 (radius: 10) [12:22:25 -25204.679944] AUTODETECT spr round 3 (radius: 15) [12:23:38 -20335.033934] AUTODETECT spr round 4 (radius: 20) [12:24:51 -17339.739442] AUTODETECT spr round 5 (radius: 25) [12:26:06 -16270.099145] SPR radius for FAST iterations: 25 (autodetect) [12:26:06 -16270.099145] Model parameter optimization (eps = 3.000000) [12:26:24 -16250.479787] FAST spr round 1 (radius: 25) [12:27:34 -13319.375615] FAST spr round 2 (radius: 25) [12:28:37 -13069.889707] FAST spr round 3 (radius: 25) [12:29:36 -13059.085061] FAST spr round 4 (radius: 25) [12:30:33 -13058.781785] FAST spr round 5 (radius: 25) [12:31:30 -13055.727670] FAST spr round 6 (radius: 25) [12:32:26 -13055.393120] FAST spr round 7 (radius: 25) [12:33:22 -13055.390459] Model parameter optimization (eps = 1.000000) [12:33:36 -13050.660896] SLOW spr round 1 (radius: 5) [12:34:38 -13045.341862] SLOW spr round 2 (radius: 5) [12:35:39 -13045.252234] SLOW spr round 3 (radius: 10) [12:36:42 -13041.363460] SLOW spr round 4 (radius: 5) [12:37:52 -13040.213985] SLOW spr round 5 (radius: 5) [12:38:56 -13039.585723] SLOW spr round 6 (radius: 5) [12:39:57 -13039.585453] SLOW spr round 7 (radius: 10) [12:41:00 -13038.669111] SLOW spr round 8 (radius: 5) [12:42:07 -13038.667343] SLOW spr round 9 (radius: 10) [12:43:11 -13038.007032] SLOW spr round 10 (radius: 5) [12:44:18 -13038.006930] SLOW spr round 11 (radius: 10) [12:45:23 -13038.006900] SLOW spr round 12 (radius: 15) [12:46:38 -12988.396297] SLOW spr round 13 (radius: 5) [12:47:51 -12961.533552] SLOW spr round 14 (radius: 5) [12:48:58 -12958.343655] SLOW spr round 15 (radius: 5) [12:49:59 -12958.314025] SLOW spr round 16 (radius: 10) [12:51:01 -12958.313898] SLOW spr round 17 (radius: 15) [12:52:16 -12958.300629] SLOW spr round 18 (radius: 20) [12:53:42 -12957.478416] SLOW spr round 19 (radius: 5) [12:54:54 -12956.671698] SLOW spr round 20 (radius: 5) [12:56:00 -12956.667202] SLOW spr round 21 (radius: 10) [12:57:02 -12956.666179] SLOW spr round 22 (radius: 15) [12:58:15 -12956.666168] SLOW spr round 23 (radius: 20) [12:59:40 -12956.666163] SLOW spr round 24 (radius: 25) [13:01:13 -12887.717826] SLOW spr round 25 (radius: 5) [13:02:26 -12883.443143] SLOW spr round 26 (radius: 5) [13:03:32 -12883.306939] SLOW spr round 27 (radius: 5) [13:04:34 -12883.306283] SLOW spr round 28 (radius: 10) [13:05:39 -12851.498647] SLOW spr round 29 (radius: 5) [13:06:47 -12851.496971] SLOW spr round 30 (radius: 10) [13:07:51 -12851.496852] SLOW spr round 31 (radius: 15) [13:09:04 -12851.431295] SLOW spr round 32 (radius: 20) [13:10:30 -12851.431282] SLOW spr round 33 (radius: 25) [13:12:03 -12850.629231] SLOW spr round 34 (radius: 5) [13:13:15 -12850.375937] SLOW spr round 35 (radius: 5) [13:14:20 -12850.351757] SLOW spr round 36 (radius: 10) [13:15:23 -12847.113718] SLOW spr round 37 (radius: 5) [13:16:30 -12847.113715] SLOW spr round 38 (radius: 10) [13:17:35 -12847.113712] SLOW spr round 39 (radius: 15) [13:18:47 -12847.113709] SLOW spr round 40 (radius: 20) [13:20:13 -12847.113706] SLOW spr round 41 (radius: 25) [13:21:46 -12847.113702] Model parameter optimization (eps = 0.100000) [13:21:53] ML tree search #13, logLikelihood: -12847.018372 [13:21:53 -70147.367909] Initial branch length optimization [13:21:54 -54957.815645] Model parameter optimization (eps = 10.000000) [13:22:10 -54328.303552] AUTODETECT spr round 1 (radius: 5) [13:23:09 -36387.446254] AUTODETECT spr round 2 (radius: 10) [13:24:15 -25883.003927] AUTODETECT spr round 3 (radius: 15) [13:25:27 -21037.475405] AUTODETECT spr round 4 (radius: 20) [13:26:41 -18786.268824] AUTODETECT spr round 5 (radius: 25) [13:27:59 -17403.942683] SPR radius for FAST iterations: 25 (autodetect) [13:27:59 -17403.942683] Model parameter optimization (eps = 3.000000) [13:28:10 -17389.840544] FAST spr round 1 (radius: 25) [13:29:19 -14613.577099] FAST spr round 2 (radius: 25) [13:30:20 -14138.001191] FAST spr round 3 (radius: 25) [13:31:20 -14113.437583] FAST spr round 4 (radius: 25) [13:32:18 -14040.879465] FAST spr round 5 (radius: 25) [13:33:14 -14040.685774] FAST spr round 6 (radius: 25) [13:34:09 -14040.684455] Model parameter optimization (eps = 1.000000) [13:34:19 -14035.587680] SLOW spr round 1 (radius: 5) [13:35:21 -14024.117358] SLOW spr round 2 (radius: 5) [13:36:22 -14023.761303] SLOW spr round 3 (radius: 5) [13:37:22 -14023.760116] SLOW spr round 4 (radius: 10) [13:38:25 -14021.655192] SLOW spr round 5 (radius: 5) [13:39:34 -14017.029601] SLOW spr round 6 (radius: 5) [13:40:38 -14017.026185] SLOW spr round 7 (radius: 10) [13:41:42 -14016.944870] SLOW spr round 8 (radius: 15) [13:42:56 -14010.982972] SLOW spr round 9 (radius: 5) [13:44:07 -14010.782182] SLOW spr round 10 (radius: 5) [13:45:12 -14010.781847] SLOW spr round 11 (radius: 10) [13:46:17 -14010.204308] SLOW spr round 12 (radius: 5) [13:47:24 -14010.203978] SLOW spr round 13 (radius: 10) [13:48:29 -14009.865677] SLOW spr round 14 (radius: 5) [13:49:36 -14009.865611] SLOW spr round 15 (radius: 10) [13:50:39 -14009.865560] SLOW spr round 16 (radius: 15) [13:51:52 -14009.335338] SLOW spr round 17 (radius: 5) [13:53:02 -14007.209867] SLOW spr round 18 (radius: 5) [13:54:07 -14006.145155] SLOW spr round 19 (radius: 5) [13:55:07 -14006.144355] SLOW spr round 20 (radius: 10) [13:56:09 -14006.144332] SLOW spr round 21 (radius: 15) [13:57:22 -14006.027548] SLOW spr round 22 (radius: 5) [13:58:33 -14004.847865] SLOW spr round 23 (radius: 5) [13:59:37 -14004.842841] SLOW spr round 24 (radius: 10) [14:00:40 -14004.840584] SLOW spr round 25 (radius: 15) [14:01:53 -14004.840584] SLOW spr round 26 (radius: 20) [14:03:21 -13998.438487] SLOW spr round 27 (radius: 5) [14:04:33 -13998.436969] SLOW spr round 28 (radius: 10) [14:05:39 -13992.734019] SLOW spr round 29 (radius: 5) [14:06:48 -13991.885082] SLOW spr round 30 (radius: 5) [14:07:51 -13990.135741] SLOW spr round 31 (radius: 5) [14:08:51 -13990.135623] SLOW spr round 32 (radius: 10) [14:09:53 -13990.135613] SLOW spr round 33 (radius: 15) [14:11:05 -13990.135601] SLOW spr round 34 (radius: 20) [14:12:30 -13987.243410] SLOW spr round 35 (radius: 5) [14:13:41 -13984.362411] SLOW spr round 36 (radius: 5) [14:14:47 -13984.209140] SLOW spr round 37 (radius: 5) [14:15:48 -13984.209042] SLOW spr round 38 (radius: 10) [14:16:49 -13984.209033] SLOW spr round 39 (radius: 15) [14:18:02 -13984.209027] SLOW spr round 40 (radius: 20) [14:19:27 -13983.898502] SLOW spr round 41 (radius: 5) [14:20:38 -13983.898306] SLOW spr round 42 (radius: 10) [14:21:44 -13983.898293] SLOW spr round 43 (radius: 15) [14:22:56 -13983.898288] SLOW spr round 44 (radius: 20) [14:24:21 -13983.898283] SLOW spr round 45 (radius: 25) [14:25:54 -13983.898277] Model parameter optimization (eps = 0.100000) [14:26:01] ML tree search #14, logLikelihood: -13983.726219 [14:26:01 -69676.161586] Initial branch length optimization [14:26:02 -54380.140586] Model parameter optimization (eps = 10.000000) [14:26:21 -53770.690155] AUTODETECT spr round 1 (radius: 5) [14:27:22 -35096.343608] AUTODETECT spr round 2 (radius: 10) [14:28:27 -24853.201891] AUTODETECT spr round 3 (radius: 15) [14:29:37 -20150.046798] AUTODETECT spr round 4 (radius: 20) [14:30:53 -17382.722087] AUTODETECT spr round 5 (radius: 25) [14:32:09 -16055.809494] SPR radius for FAST iterations: 25 (autodetect) [14:32:09 -16055.809494] Model parameter optimization (eps = 3.000000) [14:32:23 -16034.560946] FAST spr round 1 (radius: 25) [14:33:29 -13138.034116] FAST spr round 2 (radius: 25) [14:34:30 -12734.140601] FAST spr round 3 (radius: 25) [14:35:29 -12663.860630] FAST spr round 4 (radius: 25) [14:36:26 -12662.596943] FAST spr round 5 (radius: 25) [14:37:21 -12662.594998] Model parameter optimization (eps = 1.000000) [14:37:29 -12660.713679] SLOW spr round 1 (radius: 5) [14:38:31 -12652.929042] SLOW spr round 2 (radius: 5) [14:39:32 -12651.045831] SLOW spr round 3 (radius: 5) [14:40:33 -12650.730210] SLOW spr round 4 (radius: 5) [14:41:33 -12650.728850] SLOW spr round 5 (radius: 10) [14:42:37 -12635.302560] SLOW spr round 6 (radius: 5) [14:43:45 -12632.568823] SLOW spr round 7 (radius: 5) [14:44:49 -12632.566792] SLOW spr round 8 (radius: 10) [14:45:52 -12632.537790] SLOW spr round 9 (radius: 15) [14:47:09 -12613.515060] SLOW spr round 10 (radius: 5) [14:48:19 -12609.958489] SLOW spr round 11 (radius: 5) [14:49:24 -12609.536119] SLOW spr round 12 (radius: 5) [14:50:26 -12609.535170] SLOW spr round 13 (radius: 10) [14:51:29 -12609.427248] SLOW spr round 14 (radius: 5) [14:52:36 -12608.043299] SLOW spr round 15 (radius: 5) [14:53:38 -12607.630254] SLOW spr round 16 (radius: 5) [14:54:38 -12607.630221] SLOW spr round 17 (radius: 10) [14:55:40 -12607.253125] SLOW spr round 18 (radius: 5) [14:56:47 -12606.445693] SLOW spr round 19 (radius: 5) [14:57:49 -12606.445683] SLOW spr round 20 (radius: 10) [14:58:51 -12606.445673] SLOW spr round 21 (radius: 15) [15:00:05 -12601.310921] SLOW spr round 22 (radius: 5) [15:01:14 -12601.310782] SLOW spr round 23 (radius: 10) [15:02:20 -12601.310770] SLOW spr round 24 (radius: 15) [15:03:31 -12601.310764] SLOW spr round 25 (radius: 20) [15:04:57 -12598.888659] SLOW spr round 26 (radius: 5) [15:06:09 -12598.872175] SLOW spr round 27 (radius: 10) [15:07:15 -12598.871614] SLOW spr round 28 (radius: 15) [15:08:27 -12598.871437] SLOW spr round 29 (radius: 20) [15:09:53 -12598.871371] SLOW spr round 30 (radius: 25) [15:11:28 -12596.706329] SLOW spr round 31 (radius: 5) [15:12:39 -12596.701724] SLOW spr round 32 (radius: 10) [15:13:46 -12596.700473] SLOW spr round 33 (radius: 15) [15:14:58 -12596.700137] SLOW spr round 34 (radius: 20) [15:16:24 -12596.700046] SLOW spr round 35 (radius: 25) [15:18:00 -12596.700021] Model parameter optimization (eps = 0.100000) [15:18:06] ML tree search #15, logLikelihood: -12596.382079 [15:18:06 -68848.867192] Initial branch length optimization [15:18:07 -54178.282851] Model parameter optimization (eps = 10.000000) [15:18:25 -53603.520230] AUTODETECT spr round 1 (radius: 5) [15:19:25 -35758.783339] AUTODETECT spr round 2 (radius: 10) [15:20:30 -25435.721149] AUTODETECT spr round 3 (radius: 15) [15:21:39 -21038.447525] AUTODETECT spr round 4 (radius: 20) [15:22:50 -18204.020222] AUTODETECT spr round 5 (radius: 25) [15:24:12 -16700.272348] SPR radius for FAST iterations: 25 (autodetect) [15:24:12 -16700.272348] Model parameter optimization (eps = 3.000000) [15:24:31 -16654.893482] FAST spr round 1 (radius: 25) [15:25:41 -14064.586918] FAST spr round 2 (radius: 25) [15:26:44 -13829.486201] FAST spr round 3 (radius: 25) [15:27:44 -13785.504794] FAST spr round 4 (radius: 25) [15:28:43 -13783.047142] FAST spr round 5 (radius: 25) [15:29:40 -13783.046812] Model parameter optimization (eps = 1.000000) [15:29:49 -13780.941053] SLOW spr round 1 (radius: 5) [15:30:52 -13719.113893] SLOW spr round 2 (radius: 5) [15:31:54 -13718.779028] SLOW spr round 3 (radius: 5) [15:32:55 -13718.776490] SLOW spr round 4 (radius: 10) [15:33:59 -13715.624132] SLOW spr round 5 (radius: 5) [15:35:07 -13715.317938] SLOW spr round 6 (radius: 5) [15:36:10 -13715.317884] SLOW spr round 7 (radius: 10) [15:37:13 -13715.317867] SLOW spr round 8 (radius: 15) [15:38:27 -13714.874146] SLOW spr round 9 (radius: 5) [15:39:37 -13714.873997] SLOW spr round 10 (radius: 10) [15:40:45 -13710.636782] SLOW spr round 11 (radius: 5) [15:41:51 -13710.634833] SLOW spr round 12 (radius: 10) [15:42:56 -13710.633701] SLOW spr round 13 (radius: 15) [15:44:10 -13710.188780] SLOW spr round 14 (radius: 5) [15:45:21 -13710.112841] SLOW spr round 15 (radius: 10) [15:46:28 -13710.112599] SLOW spr round 16 (radius: 15) [15:47:40 -13710.112577] SLOW spr round 17 (radius: 20) [15:49:02 -13710.110044] SLOW spr round 18 (radius: 25) [15:50:29 -13710.110043] Model parameter optimization (eps = 0.100000) [15:50:33] ML tree search #16, logLikelihood: -13710.100933 [15:50:33 -69532.855502] Initial branch length optimization [15:50:34 -54265.370112] Model parameter optimization (eps = 10.000000) [15:50:50 -53632.434403] AUTODETECT spr round 1 (radius: 5) [15:51:51 -36032.402380] AUTODETECT spr round 2 (radius: 10) [15:52:57 -25745.645882] AUTODETECT spr round 3 (radius: 15) [15:54:11 -20739.426340] AUTODETECT spr round 4 (radius: 20) [15:55:29 -18645.811377] AUTODETECT spr round 5 (radius: 25) [15:56:50 -17176.583761] SPR radius for FAST iterations: 25 (autodetect) [15:56:50 -17176.583761] Model parameter optimization (eps = 3.000000) [15:57:04 -17116.271066] FAST spr round 1 (radius: 25) [15:58:14 -14224.924851] FAST spr round 2 (radius: 25) [15:59:19 -13931.170233] FAST spr round 3 (radius: 25) [16:00:20 -13646.914221] FAST spr round 4 (radius: 25) [16:01:20 -13585.958822] FAST spr round 5 (radius: 25) [16:02:19 -13486.845111] FAST spr round 6 (radius: 25) [16:03:17 -13473.069728] FAST spr round 7 (radius: 25) [16:04:14 -13468.599642] FAST spr round 8 (radius: 25) [16:05:10 -13468.599115] Model parameter optimization (eps = 1.000000) [16:05:18 -13466.479922] SLOW spr round 1 (radius: 5) [16:06:18 -13458.843200] SLOW spr round 2 (radius: 5) [16:07:20 -13368.216969] SLOW spr round 3 (radius: 5) [16:08:22 -13360.154634] SLOW spr round 4 (radius: 5) [16:09:24 -13355.868539] SLOW spr round 5 (radius: 5) [16:10:24 -13355.711087] SLOW spr round 6 (radius: 5) [16:11:23 -13355.710146] SLOW spr round 7 (radius: 10) [16:12:25 -13355.710033] SLOW spr round 8 (radius: 15) [16:13:39 -13354.733891] SLOW spr round 9 (radius: 5) [16:14:50 -13353.680645] SLOW spr round 10 (radius: 5) [16:15:55 -13353.679873] SLOW spr round 11 (radius: 10) [16:16:58 -13352.821194] SLOW spr round 12 (radius: 5) [16:18:05 -13352.820289] SLOW spr round 13 (radius: 10) [16:19:08 -13352.820242] SLOW spr round 14 (radius: 15) [16:20:21 -13352.116196] SLOW spr round 15 (radius: 5) [16:21:31 -13352.010739] SLOW spr round 16 (radius: 5) [16:22:35 -13352.010694] SLOW spr round 17 (radius: 10) [16:23:38 -13352.010690] SLOW spr round 18 (radius: 15) [16:24:51 -13352.010686] SLOW spr round 19 (radius: 20) [16:26:17 -13282.075286] SLOW spr round 20 (radius: 5) [16:27:30 -13272.601782] SLOW spr round 21 (radius: 5) [16:28:36 -13267.990676] SLOW spr round 22 (radius: 5) [16:29:39 -13267.088181] SLOW spr round 23 (radius: 5) [16:30:38 -13267.084979] SLOW spr round 24 (radius: 10) [16:31:40 -13267.084269] SLOW spr round 25 (radius: 15) [16:32:53 -13266.296443] SLOW spr round 26 (radius: 5) [16:34:05 -13261.076274] SLOW spr round 27 (radius: 5) [16:35:11 -13260.286028] SLOW spr round 28 (radius: 5) [16:36:12 -13260.141749] SLOW spr round 29 (radius: 5) [16:37:11 -13260.139733] SLOW spr round 30 (radius: 10) [16:38:13 -13260.139202] SLOW spr round 31 (radius: 15) [16:39:27 -13260.139025] SLOW spr round 32 (radius: 20) [16:40:52 -13258.962377] SLOW spr round 33 (radius: 5) [16:42:05 -13258.286119] SLOW spr round 34 (radius: 5) [16:43:10 -13258.285175] SLOW spr round 35 (radius: 10) [16:44:13 -13258.285019] SLOW spr round 36 (radius: 15) [16:45:26 -13258.284975] SLOW spr round 37 (radius: 20) [16:46:51 -13258.284957] SLOW spr round 38 (radius: 25) [16:48:29 -13254.297510] SLOW spr round 39 (radius: 5) [16:49:42 -13233.055301] SLOW spr round 40 (radius: 5) [16:50:48 -13233.054306] SLOW spr round 41 (radius: 10) [16:51:50 -13233.054302] SLOW spr round 42 (radius: 15) [16:53:02 -13233.054299] SLOW spr round 43 (radius: 20) [16:54:25 -13233.054295] SLOW spr round 44 (radius: 25) [16:56:00 -13233.054292] Model parameter optimization (eps = 0.100000) [16:56:03] ML tree search #17, logLikelihood: -13232.974113 [16:56:03 -69725.993461] Initial branch length optimization [16:56:04 -54434.180066] Model parameter optimization (eps = 10.000000) [16:56:21 -53880.363692] AUTODETECT spr round 1 (radius: 5) [16:57:21 -36118.848847] AUTODETECT spr round 2 (radius: 10) [16:58:28 -25330.422645] AUTODETECT spr round 3 (radius: 15) [16:59:42 -19044.551818] AUTODETECT spr round 4 (radius: 20) [17:00:53 -16615.166634] AUTODETECT spr round 5 (radius: 25) [17:02:09 -15824.282112] SPR radius for FAST iterations: 25 (autodetect) [17:02:09 -15824.282112] Model parameter optimization (eps = 3.000000) [17:02:22 -15800.643851] FAST spr round 1 (radius: 25) [17:03:30 -13429.256254] FAST spr round 2 (radius: 25) [17:04:30 -13016.917117] FAST spr round 3 (radius: 25) [17:05:29 -12992.440001] FAST spr round 4 (radius: 25) [17:06:27 -12988.872497] FAST spr round 5 (radius: 25) [17:07:24 -12965.158943] FAST spr round 6 (radius: 25) [17:08:22 -12942.759077] FAST spr round 7 (radius: 25) [17:09:19 -12940.837751] FAST spr round 8 (radius: 25) [17:10:16 -12939.477841] FAST spr round 9 (radius: 25) [17:11:11 -12939.475818] Model parameter optimization (eps = 1.000000) [17:11:23 -12935.508880] SLOW spr round 1 (radius: 5) [17:12:25 -12930.420685] SLOW spr round 2 (radius: 5) [17:13:26 -12930.358535] SLOW spr round 3 (radius: 10) [17:14:28 -12930.319890] SLOW spr round 4 (radius: 15) [17:15:43 -12920.437186] SLOW spr round 5 (radius: 5) [17:16:55 -12916.930814] SLOW spr round 6 (radius: 5) [17:18:00 -12915.741427] SLOW spr round 7 (radius: 5) [17:19:03 -12915.687036] SLOW spr round 8 (radius: 10) [17:20:05 -12915.686868] SLOW spr round 9 (radius: 15) [17:21:20 -12914.828514] SLOW spr round 10 (radius: 5) [17:22:32 -12902.016129] SLOW spr round 11 (radius: 5) [17:23:36 -12902.016058] SLOW spr round 12 (radius: 10) [17:24:40 -12895.121492] SLOW spr round 13 (radius: 5) [17:25:47 -12895.120623] SLOW spr round 14 (radius: 10) [17:26:52 -12894.818022] SLOW spr round 15 (radius: 5) [17:27:58 -12894.817623] SLOW spr round 16 (radius: 10) [17:29:01 -12894.817345] SLOW spr round 17 (radius: 15) [17:30:15 -12894.817143] SLOW spr round 18 (radius: 20) [17:31:42 -12860.482292] SLOW spr round 19 (radius: 5) [17:32:55 -12775.292853] SLOW spr round 20 (radius: 5) [17:34:02 -12773.952859] SLOW spr round 21 (radius: 5) [17:35:03 -12773.952185] SLOW spr round 22 (radius: 10) [17:36:06 -12773.952165] SLOW spr round 23 (radius: 15) [17:37:21 -12773.952157] SLOW spr round 24 (radius: 20) [17:38:47 -12772.938645] SLOW spr round 25 (radius: 5) [17:39:58 -12772.643264] SLOW spr round 26 (radius: 5) [17:41:03 -12772.643259] SLOW spr round 27 (radius: 10) [17:42:07 -12772.643254] SLOW spr round 28 (radius: 15) [17:43:22 -12772.643249] SLOW spr round 29 (radius: 20) [17:44:49 -12772.643245] SLOW spr round 30 (radius: 25) [17:46:25 -12767.058220] SLOW spr round 31 (radius: 5) [17:47:38 -12764.113732] SLOW spr round 32 (radius: 5) [17:48:43 -12764.111353] SLOW spr round 33 (radius: 10) [17:49:47 -12764.111310] SLOW spr round 34 (radius: 15) [17:51:01 -12764.111305] SLOW spr round 35 (radius: 20) [17:52:27 -12763.842163] SLOW spr round 36 (radius: 5) [17:53:37 -12763.842126] SLOW spr round 37 (radius: 10) [17:54:44 -12763.842121] SLOW spr round 38 (radius: 15) [17:55:57 -12763.842116] SLOW spr round 39 (radius: 20) [17:57:23 -12763.842112] SLOW spr round 40 (radius: 25) [17:58:57 -12762.228132] SLOW spr round 41 (radius: 5) [18:00:08 -12762.228120] SLOW spr round 42 (radius: 10) [18:01:16 -12762.228115] SLOW spr round 43 (radius: 15) [18:02:29 -12762.228110] SLOW spr round 44 (radius: 20) [18:03:55 -12762.228106] SLOW spr round 45 (radius: 25) [18:05:28 -12762.228101] Model parameter optimization (eps = 0.100000) [18:05:33] ML tree search #18, logLikelihood: -12762.082094 [18:05:34 -69658.367013] Initial branch length optimization [18:05:35 -54407.683432] Model parameter optimization (eps = 10.000000) [18:05:53 -53774.974318] AUTODETECT spr round 1 (radius: 5) [18:06:52 -35233.469148] AUTODETECT spr round 2 (radius: 10) [18:07:58 -25541.679693] AUTODETECT spr round 3 (radius: 15) [18:09:09 -20193.930675] AUTODETECT spr round 4 (radius: 20) [18:10:22 -18043.409279] AUTODETECT spr round 5 (radius: 25) [18:11:39 -17040.594849] SPR radius for FAST iterations: 25 (autodetect) [18:11:39 -17040.594849] Model parameter optimization (eps = 3.000000) [18:11:55 -17006.305836] FAST spr round 1 (radius: 25) [18:13:06 -14503.044840] FAST spr round 2 (radius: 25) [18:14:09 -14374.825132] FAST spr round 3 (radius: 25) [18:15:10 -14287.817926] FAST spr round 4 (radius: 25) [18:16:10 -14274.026868] FAST spr round 5 (radius: 25) [18:17:07 -14274.021815] Model parameter optimization (eps = 1.000000) [18:17:11 -14273.107607] SLOW spr round 1 (radius: 5) [18:18:14 -14266.780750] SLOW spr round 2 (radius: 5) [18:19:15 -14266.764183] SLOW spr round 3 (radius: 10) [18:20:18 -14266.246969] SLOW spr round 4 (radius: 5) [18:21:26 -14265.737006] SLOW spr round 5 (radius: 5) [18:22:30 -14265.736917] SLOW spr round 6 (radius: 10) [18:23:33 -14265.736832] SLOW spr round 7 (radius: 15) [18:24:45 -14260.639137] SLOW spr round 8 (radius: 5) [18:25:56 -14260.216398] SLOW spr round 9 (radius: 5) [18:27:01 -14260.216152] SLOW spr round 10 (radius: 10) [18:28:04 -14260.216100] SLOW spr round 11 (radius: 15) [18:29:16 -14251.566075] SLOW spr round 12 (radius: 5) [18:30:28 -14247.815986] SLOW spr round 13 (radius: 5) [18:31:35 -14237.473957] SLOW spr round 14 (radius: 5) [18:32:38 -14237.473793] SLOW spr round 15 (radius: 10) [18:33:41 -14237.473788] SLOW spr round 16 (radius: 15) [18:34:53 -14237.473788] SLOW spr round 17 (radius: 20) [18:36:13 -14237.473787] SLOW spr round 18 (radius: 25) [18:37:36 -14235.619458] SLOW spr round 19 (radius: 5) [18:38:51 -14183.603180] SLOW spr round 20 (radius: 5) [18:39:59 -14173.601085] SLOW spr round 21 (radius: 5) [18:41:01 -14173.600189] SLOW spr round 22 (radius: 10) [18:42:04 -14173.600095] SLOW spr round 23 (radius: 15) [18:43:15 -14173.600084] SLOW spr round 24 (radius: 20) [18:44:37 -14169.615123] SLOW spr round 25 (radius: 5) [18:45:50 -14167.912109] SLOW spr round 26 (radius: 5) [18:46:56 -14167.634369] SLOW spr round 27 (radius: 5) [18:47:58 -14167.634268] SLOW spr round 28 (radius: 10) [18:49:03 -14165.280104] SLOW spr round 29 (radius: 5) [18:50:12 -14165.247868] SLOW spr round 30 (radius: 10) [18:51:17 -14164.980650] SLOW spr round 31 (radius: 5) [18:52:25 -14164.980133] SLOW spr round 32 (radius: 10) [18:53:30 -14164.980072] SLOW spr round 33 (radius: 15) [18:54:43 -14162.964266] SLOW spr round 34 (radius: 5) [18:55:53 -14162.578556] SLOW spr round 35 (radius: 5) [18:56:59 -14162.330363] SLOW spr round 36 (radius: 5) [18:58:01 -14160.738953] SLOW spr round 37 (radius: 5) [18:59:01 -14160.738804] SLOW spr round 38 (radius: 10) [19:00:04 -14160.738799] SLOW spr round 39 (radius: 15) [19:01:17 -14160.738798] SLOW spr round 40 (radius: 20) [19:02:40 -14158.595898] SLOW spr round 41 (radius: 5) [19:03:51 -14158.595898] SLOW spr round 42 (radius: 10) [19:04:58 -14158.595897] SLOW spr round 43 (radius: 15) [19:06:10 -14158.595897] SLOW spr round 44 (radius: 20) [19:07:34 -14158.595897] SLOW spr round 45 (radius: 25) [19:09:01 -14158.595896] Model parameter optimization (eps = 0.100000) [19:09:11] ML tree search #19, logLikelihood: -14156.995342 [19:09:11 -69260.775799] Initial branch length optimization [19:09:12 -53974.505559] Model parameter optimization (eps = 10.000000) [19:09:29 -53292.514025] AUTODETECT spr round 1 (radius: 5) [19:10:29 -35785.034164] AUTODETECT spr round 2 (radius: 10) [19:11:35 -26293.234095] AUTODETECT spr round 3 (radius: 15) [19:12:47 -21494.607779] AUTODETECT spr round 4 (radius: 20) [19:13:58 -19230.765856] AUTODETECT spr round 5 (radius: 25) [19:15:16 -18209.408373] SPR radius for FAST iterations: 25 (autodetect) [19:15:16 -18209.408373] Model parameter optimization (eps = 3.000000) [19:15:33 -18145.182770] FAST spr round 1 (radius: 25) [19:16:40 -14721.376797] FAST spr round 2 (radius: 25) [19:17:41 -13843.843732] FAST spr round 3 (radius: 25) [19:18:39 -13341.828026] FAST spr round 4 (radius: 25) [19:19:37 -13185.851631] FAST spr round 5 (radius: 25) [19:20:35 -13023.409140] FAST spr round 6 (radius: 25) [19:21:31 -13019.260147] FAST spr round 7 (radius: 25) [19:22:26 -13019.258806] Model parameter optimization (eps = 1.000000) [19:22:33 -13017.966158] SLOW spr round 1 (radius: 5) [19:23:34 -13015.991190] SLOW spr round 2 (radius: 5) [19:24:34 -13013.401636] SLOW spr round 3 (radius: 5) [19:25:34 -13013.401630] SLOW spr round 4 (radius: 10) [19:26:39 -12876.496953] SLOW spr round 5 (radius: 5) [19:27:48 -12697.477127] SLOW spr round 6 (radius: 5) [19:28:52 -12578.054255] SLOW spr round 7 (radius: 5) [19:29:53 -12576.271339] SLOW spr round 8 (radius: 5) [19:30:54 -12576.147586] SLOW spr round 9 (radius: 5) [19:31:54 -12576.147149] SLOW spr round 10 (radius: 10) [19:32:56 -12574.817806] SLOW spr round 11 (radius: 5) [19:34:02 -12572.461672] SLOW spr round 12 (radius: 5) [19:35:04 -12572.461615] SLOW spr round 13 (radius: 10) [19:36:06 -12567.602346] SLOW spr round 14 (radius: 5) [19:37:13 -12566.792932] SLOW spr round 15 (radius: 5) [19:38:15 -12566.792480] SLOW spr round 16 (radius: 10) [19:39:16 -12566.792471] SLOW spr round 17 (radius: 15) [19:40:30 -12516.550522] SLOW spr round 18 (radius: 5) [19:41:41 -12368.336425] SLOW spr round 19 (radius: 5) [19:42:46 -12361.592854] SLOW spr round 20 (radius: 5) [19:43:48 -12361.484286] SLOW spr round 21 (radius: 5) [19:44:49 -12359.866988] SLOW spr round 22 (radius: 5) [19:45:49 -12359.787770] SLOW spr round 23 (radius: 10) [19:46:51 -12358.685276] SLOW spr round 24 (radius: 5) [19:47:58 -12358.685265] SLOW spr round 25 (radius: 10) [19:49:02 -12344.205015] SLOW spr round 26 (radius: 5) [19:50:09 -12336.509979] SLOW spr round 27 (radius: 5) [19:51:11 -12336.378327] SLOW spr round 28 (radius: 5) [19:52:11 -12336.373702] SLOW spr round 29 (radius: 10) [19:53:12 -12336.373678] SLOW spr round 30 (radius: 15) [19:54:25 -12335.185221] SLOW spr round 31 (radius: 5) [19:55:34 -12335.185147] SLOW spr round 32 (radius: 10) [19:56:40 -12335.185123] SLOW spr round 33 (radius: 15) [19:57:52 -12335.185105] SLOW spr round 34 (radius: 20) [19:59:17 -12309.935383] SLOW spr round 35 (radius: 5) [20:00:27 -12308.564998] SLOW spr round 36 (radius: 5) [20:01:32 -12308.564916] SLOW spr round 37 (radius: 10) [20:02:34 -12308.564914] SLOW spr round 38 (radius: 15) [20:03:46 -12308.564914] SLOW spr round 39 (radius: 20) [20:05:09 -12308.560440] SLOW spr round 40 (radius: 25) [20:06:38 -12306.244554] SLOW spr round 41 (radius: 5) [20:07:50 -12305.193359] SLOW spr round 42 (radius: 5) [20:08:55 -12305.192976] SLOW spr round 43 (radius: 10) [20:09:57 -12305.192960] SLOW spr round 44 (radius: 15) [20:11:09 -12305.192957] SLOW spr round 45 (radius: 20) [20:12:33 -12305.192955] SLOW spr round 46 (radius: 25) [20:14:03 -12305.192953] Model parameter optimization (eps = 0.100000) [20:14:11] ML tree search #20, logLikelihood: -12304.279403 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.176288,0.443872) (0.235634,0.346320) (0.441037,1.197605) (0.147040,2.121578) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -12101.144593 AIC score: 28064.289185 / AICc score: 7489448.289185 / BIC score: 31011.691358 Free parameters (model + branch lengths): 1931 WARNING: Number of free parameters (K=1931) is larger than alignment size (n=34). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 1 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/3_mltree/Q6ZMN7.raxml.bestTreeCollapsed Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/3_mltree/Q6ZMN7.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/3_mltree/Q6ZMN7.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/3_mltree/Q6ZMN7.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMN7/3_mltree/Q6ZMN7.raxml.log Analysis started: 10-Jul-2021 06:53:48 / finished: 11-Jul-2021 03:08:00 Elapsed time: 72851.955 seconds