RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 04-Jul-2021 15:49:43 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMI3/2_msa/Q6ZMI3_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMI3/3_mltree/Q6ZMI3 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMI3/2_msa/Q6ZMI3_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 41 sites WARNING: Sequences tr_F1NBS7_F1NBS7_CHICK_9031 and tr_G1N4A0_G1N4A0_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NBS7_F1NBS7_CHICK_9031 and tr_A0A226MS99_A0A226MS99_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NBS7_F1NBS7_CHICK_9031 and tr_A0A226PKI1_A0A226PKI1_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_G1N637_G1N637_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_H0Z6H8_H0Z6H8_TAEGU_59729 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_U3JG49_U3JG49_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_U3IQ19_U3IQ19_ANAPL_8839 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A151MFU1_A0A151MFU1_ALLMI_8496 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A0Q3PQM7_A0A0Q3PQM7_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A091F9S6_A0A091F9S6_CORBR_85066 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A091JG19_A0A091JG19_EGRGA_188379 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A093SM45_A0A093SM45_9PASS_328815 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A091VTL0_A0A091VTL0_NIPNI_128390 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A087R4Q6_A0A087R4Q6_APTFO_9233 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A093JB84_A0A093JB84_STRCA_441894 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A091XVL2_A0A091XVL2_OPIHO_30419 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A099ZKC3_A0A099ZKC3_TINGU_94827 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A091GJF4_A0A091GJF4_9AVES_55661 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A0A0B119_A0A0A0B119_CHAVO_50402 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A2I0M3M4_A0A2I0M3M4_COLLI_8932 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A1U7S3P9_A0A1U7S3P9_ALLSI_38654 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A1V4J5Y9_A0A1V4J5Y9_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A218V6G4_A0A218V6G4_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A226NMR4_A0A226NMR4_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q9IAK4_NOE1_CHICK_9031 and tr_A0A226P9C4_A0A226P9C4_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q02788_CO6A2_MOUSE_10090 and tr_F7CGV8_F7CGV8_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q02788_CO6A2_MOUSE_10090 and tr_F1LNH3_F1LNH3_RAT_10116 are exactly identical! WARNING: Sequences sp_Q02788_CO6A2_MOUSE_10090 and sp_P12110_CO6A2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q02788_CO6A2_MOUSE_10090 and tr_G5C7V8_G5C7V8_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q02788_CO6A2_MOUSE_10090 and tr_A0A1S3GK41_A0A1S3GK41_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q02788_CO6A2_MOUSE_10090 and tr_A0A2R9A7P8_A0A2R9A7P8_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q02788_CO6A2_MOUSE_10090 and tr_A0A2Y9Q511_A0A2Y9Q511_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q02788_CO6A2_MOUSE_10090 and tr_A0A2Y9FH40_A0A2Y9FH40_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q4ZJN1_C1QT9_MOUSE_10090 and tr_D3ZJ76_D3ZJ76_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_M3YSX6_M3YSX6_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2I3HU47_A0A2I3HU47_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_G1PBQ6_G1PBQ6_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_G3QT74_G3QT74_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_H2NXH6_H2NXH6_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_G1SMC5_G1SMC5_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_F1P6C4_F1P6C4_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2I3T087_A0A2I3T087_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and sp_Q568Y7_NOE2_RAT_10116 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A287D1T6_A0A287D1T6_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_H0X2N5_H0X2N5_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_H0W3G4_H0W3G4_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and sp_O95897_NOE2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A1D5QCB9_A0A1D5QCB9_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_G5B357_G5B357_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_G3TDJ6_G3TDJ6_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2R8MGZ3_A0A2R8MGZ3_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_F1S3G6_F1S3G6_PIG_9823 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_G1M0Y6_G1M0Y6_AILME_9646 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_F1MTJ5_F1MTJ5_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_L5L3M9_L5L3M9_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2I2UM22_A0A2I2UM22_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2I3NA02_A0A2I3NA02_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A0D9R5L3_A0A0D9R5L3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A1S3GMH7_A0A1S3GMH7_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A1U7TEU0_A0A1U7TEU0_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A1U7QT73_A0A1U7QT73_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2K5LIV9_A0A2K5LIV9_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2K6CHL5_A0A2K6CHL5_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2K5Z4G0_A0A2K5Z4G0_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2R9CHF1_A0A2R9CHF1_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2U4B6A4_A0A2U4B6A4_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2U3ZE95_A0A2U3ZE95_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2U3YAM1_A0A2U3YAM1_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2Y9DPB5_A0A2Y9DPB5_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2Y9L979_A0A2Y9L979_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2Y9M6P1_A0A2Y9M6P1_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A2Y9TJK8_A0A2Y9TJK8_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A384DHP4_A0A384DHP4_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q8BM13_NOE2_MOUSE_10090 and tr_A0A383Z1X4_A0A383Z1X4_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3XQU1_M3XQU1_MUSPF_9669 and tr_A0A2U3X2D1_A0A2U3X2D1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XQU1_M3XQU1_MUSPF_9669 and tr_A0A2U3YQ91_A0A2U3YQ91_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XQU1_M3XQU1_MUSPF_9669 and tr_A0A2Y9KRQ9_A0A2Y9KRQ9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y1J0_M3Y1J0_MUSPF_9669 and tr_A0A2U3XT40_A0A2U3XT40_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y1J0_M3Y1J0_MUSPF_9669 and tr_A0A2Y9IWP6_A0A2Y9IWP6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y8V8_M3Y8V8_MUSPF_9669 and tr_E2REW9_E2REW9_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y8V8_M3Y8V8_MUSPF_9669 and tr_G1LRH1_G1LRH1_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y8V8_M3Y8V8_MUSPF_9669 and tr_A0A384DB87_A0A384DB87_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YKV4_M3YKV4_MUSPF_9669 and tr_J9P3T0_J9P3T0_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YKV4_M3YKV4_MUSPF_9669 and tr_A0A2U3WNV9_A0A2U3WNV9_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YKV4_M3YKV4_MUSPF_9669 and tr_A0A2U3Y7J1_A0A2U3Y7J1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YKV4_M3YKV4_MUSPF_9669 and tr_A0A2Y9JE64_A0A2Y9JE64_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_G3IJL3_G3IJL3_CRIGR_10029 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_G3RJC5_G3RJC5_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_H2PTW9_H2PTW9_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_H2R1M0_H2R1M0_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and sp_Q62609_NOE1_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_I3ND57_I3ND57_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_H0WUT4_H0WUT4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and sp_Q99784_NOE1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_F6V489_F6V489_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_A0A2R8PE66_A0A2R8PE66_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_G7PR72_G7PR72_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_A0A2I3LPX1_A0A2I3LPX1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_A0A0D9RSW3_A0A0D9RSW3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_A0A1S3G7W4_A0A1S3G7W4_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_A0A1U7R415_A0A1U7R415_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_A0A2K5NHM1_A0A2K5NHM1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_A0A2K6BQR2_A0A2K6BQR2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_A0A2K5YAU1_A0A2K5YAU1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GMX9_A0A2I3GMX9_NOMLE_61853 and tr_A0A2R9BNE9_A0A2R9BNE9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QSI7_G1QSI7_NOMLE_61853 and tr_G3SKQ7_G3SKQ7_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QSI7_G1QSI7_NOMLE_61853 and tr_H2QT85_H2QT85_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_G1PEQ6_G1PEQ6_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_G3QLN5_G3QLN5_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_H2NN84_H2NN84_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_H2Q9F6_H2Q9F6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and sp_Q6ZMI3_GLDN_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_G7MXB1_G7MXB1_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_F7I4Y9_F7I4Y9_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_F1RYN3_F1RYN3_PIG_9823 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_E1BN05_E1BN05_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_A0A096NM35_A0A096NM35_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_A0A0D9RFS6_A0A0D9RFS6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_A0A1U7ULY5_A0A1U7ULY5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_A0A2K5LAH5_A0A2K5LAH5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_A0A2K6DRY5_A0A2K6DRY5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_A0A2K5YW99_A0A2K5YW99_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_A0A2R9A457_A0A2R9A457_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1R3I4_G1R3I4_NOMLE_61853 and tr_A0A2Y9IR92_A0A2Y9IR92_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1RJF0_G1RJF0_NOMLE_61853 and tr_G3QJ50_G3QJ50_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RJF0_G1RJF0_NOMLE_61853 and tr_H2P914_H2P914_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RJF0_G1RJF0_NOMLE_61853 and tr_H2QJP2_H2QJP2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RJF0_G1RJF0_NOMLE_61853 and sp_P12111_CO6A3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RJF0_G1RJF0_NOMLE_61853 and tr_F7AG99_F7AG99_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RJF0_G1RJF0_NOMLE_61853 and tr_A0A2K6CRS0_A0A2K6CRS0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RJF0_G1RJF0_NOMLE_61853 and tr_A0A2K5Y9T7_A0A2K5Y9T7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RSZ2_G1RSZ2_NOMLE_61853 and tr_H2NJE7_H2NJE7_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2YM85_A0A2I2YM85_GORGO_9595 and tr_H2Q7A6_H2Q7A6_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YM85_A0A2I2YM85_GORGO_9595 and sp_P0C862_C1T9A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QM74_G3QM74_GORGO_9595 and tr_H0WRA1_H0WRA1_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G3RHS7_G3RHS7_GORGO_9595 and sp_Q9UEW3_MARCO_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PBX1_H2PBX1_PONAB_9601 and tr_A0A2I3S1X9_A0A2I3S1X9_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2PBX1_H2PBX1_PONAB_9601 and sp_A6NHN0_OTOL1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PBX1_H2PBX1_PONAB_9601 and tr_A0A2R9AGT0_A0A2R9AGT0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1MSI1_G1MSI1_MELGA_9103 and tr_U3HZP3_U3HZP3_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1MSI1_G1MSI1_MELGA_9103 and tr_A0A099Z044_A0A099Z044_TINGU_94827 are exactly identical! WARNING: Sequences tr_G1MSQ6_G1MSQ6_MELGA_9103 and tr_A0A087R9G2_A0A087R9G2_APTFO_9233 are exactly identical! WARNING: Sequences tr_G3USK9_G3USK9_MELGA_9103 and tr_A0A226N306_A0A226N306_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1TMJ7_G1TMJ7_RABIT_9986 and tr_H0X9N4_H0X9N4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A0R3P5J4_A0A0R3P5J4_DROPS_46245 and tr_B4H066_B4H066_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A2I3TET7_A0A2I3TET7_PANTR_9598 and tr_A0A2R9BMI0_A0A2R9BMI0_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6ZCY5_F6ZCY5_ORNAN_9258 and tr_G3THR5_G3THR5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F6ZCY5_F6ZCY5_ORNAN_9258 and tr_A0A3Q0DE37_A0A3Q0DE37_TARSY_1868482 are exactly identical! WARNING: Sequences tr_F6ZCY5_F6ZCY5_ORNAN_9258 and tr_A0A2Y9G1E5_A0A2Y9G1E5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F6XID5_F6XID5_MONDO_13616 and tr_G3WAD0_G3WAD0_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7EDF9_F7EDF9_MONDO_13616 and tr_G3WZT5_G3WZT5_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5P879_W5P879_SHEEP_9940 and tr_A0A2U4B1B6_A0A2U4B1B6_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5P879_W5P879_SHEEP_9940 and tr_A0A2Y9NT78_A0A2Y9NT78_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5P879_W5P879_SHEEP_9940 and tr_A0A2Y9ESX8_A0A2Y9ESX8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5P879_W5P879_SHEEP_9940 and tr_A0A384AI67_A0A384AI67_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A3B5QHA5_A0A3B5QHA5_XIPMA_8083 and tr_A0A087XKG0_A0A087XKG0_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QPD7_A0A3B5QPD7_XIPMA_8083 and tr_A0A2I4CNM9_A0A2I4CNM9_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A3B5QSY9_A0A3B5QSY9_XIPMA_8083 and tr_A0A087Y2U8_A0A087Y2U8_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5R3V6_A0A3B5R3V6_XIPMA_8083 and tr_A0A087X9L0_A0A087X9L0_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5R3V6_A0A3B5R3V6_XIPMA_8083 and tr_A0A2U9BPN5_A0A2U9BPN5_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A158NU63_A0A158NU63_ATTCE_12957 and tr_A0A151I4K6_A0A151I4K6_9HYME_520822 are exactly identical! WARNING: Sequences tr_I3M9T1_I3M9T1_ICTTR_43179 and tr_A0A1S3ENN0_A0A1S3ENN0_DIPOR_10020 are exactly identical! WARNING: Sequences tr_H2UFP4_H2UFP4_TAKRU_31033 and tr_H3CS59_H3CS59_TETNG_99883 are exactly identical! WARNING: Sequences tr_H0W0L9_H0W0L9_CAVPO_10141 and tr_G5B8J0_G5B8J0_HETGA_10181 are exactly identical! WARNING: Sequences tr_H0W0L9_H0W0L9_CAVPO_10141 and tr_A0A091CQS4_A0A091CQS4_FUKDA_885580 are exactly identical! WARNING: Sequences sp_A6NMZ7_CO6A6_HUMAN_9606 and tr_A0A1D5RDG7_A0A1D5RDG7_MACMU_9544 are exactly identical! WARNING: Sequences sp_A6NMZ7_CO6A6_HUMAN_9606 and tr_G7NY04_G7NY04_MACFA_9541 are exactly identical! WARNING: Sequences sp_A6NMZ7_CO6A6_HUMAN_9606 and tr_A0A096N9M9_A0A096N9M9_PAPAN_9555 are exactly identical! WARNING: Sequences sp_A6NMZ7_CO6A6_HUMAN_9606 and tr_A0A2K5XYG8_A0A2K5XYG8_MANLE_9568 are exactly identical! WARNING: Sequences sp_A6NMZ7_CO6A6_HUMAN_9606 and tr_A0A2R9BJ46_A0A2R9BJ46_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6UGC1_F6UGC1_MACMU_9544 and tr_A0A0D9RCU7_A0A0D9RCU7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6UGC1_F6UGC1_MACMU_9544 and tr_A0A2K6E5E8_A0A2K6E5E8_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6XD59_F6XD59_MACMU_9544 and tr_F1MKG2_F1MKG2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F6XD59_F6XD59_MACMU_9544 and tr_A0A096NI97_A0A096NI97_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6XD59_F6XD59_MACMU_9544 and tr_A0A0D9R4H0_A0A0D9R4H0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6XD59_F6XD59_MACMU_9544 and tr_A0A2K5NK39_A0A2K5NK39_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6XD59_F6XD59_MACMU_9544 and tr_A0A2K6CKR7_A0A2K6CKR7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6XD59_F6XD59_MACMU_9544 and tr_A0A2K5XKZ9_A0A2K5XKZ9_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7FPW3_F7FPW3_MACMU_9544 and tr_A0A0D9RIU4_A0A0D9RIU4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7FPW3_F7FPW3_MACMU_9544 and tr_A0A2K5MIM6_A0A2K5MIM6_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7FPW3_F7FPW3_MACMU_9544 and tr_A0A2K6B809_A0A2K6B809_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7FPW3_F7FPW3_MACMU_9544 and tr_A0A2K5YA30_A0A2K5YA30_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7FYZ2_F7FYZ2_MACMU_9544 and tr_A0A2K5M5S7_A0A2K5M5S7_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7FYZ2_F7FYZ2_MACMU_9544 and tr_A0A2K6CSK8_A0A2K6CSK8_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7FYZ2_F7FYZ2_MACMU_9544 and tr_A0A2K5ZT07_A0A2K5ZT07_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7H069_F7H069_MACMU_9544 and tr_A0A0D9RCT6_A0A0D9RCT6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7H069_F7H069_MACMU_9544 and tr_A0A2K6BUT8_A0A2K6BUT8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3PW76_G3PW76_GASAC_69293 and tr_A0A2I4BU94_A0A2I4BU94_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A1B8YAC8_A0A1B8YAC8_XENTR_8364 and tr_A4IHX8_A4IHX8_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A1B8YAC8_A0A1B8YAC8_XENTR_8364 and tr_A0A1L8F153_A0A1L8F153_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1B8YAC8_A0A1B8YAC8_XENTR_8364 and tr_A0A1L8F647_A0A1L8F647_XENLA_8355 are exactly identical! WARNING: Sequences tr_G1L445_G1L445_AILME_9646 and tr_A0A384DMT7_A0A384DMT7_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LDU4_G1LDU4_AILME_9646 and tr_A0A384DS66_A0A384DS66_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LDX5_G1LDX5_AILME_9646 and tr_A0A384DJ23_A0A384DJ23_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LVY1_G1LVY1_AILME_9646 and tr_A0A384DLM5_A0A384DLM5_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1MI33_G1MI33_AILME_9646 and tr_M3W1Y6_M3W1Y6_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1MI33_G1MI33_AILME_9646 and tr_A0A2U3W276_A0A2U3W276_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1MI33_G1MI33_AILME_9646 and tr_A0A2U3YL46_A0A2U3YL46_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1MI33_G1MI33_AILME_9646 and tr_A0A2Y9J3K0_A0A2Y9J3K0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_U3ID88_U3ID88_ANAPL_8839 and tr_A0A093GEJ3_A0A093GEJ3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2I3N198_A0A2I3N198_PAPAN_9555 and tr_A0A0D9RZL4_A0A0D9RZL4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3N198_A0A2I3N198_PAPAN_9555 and tr_A0A2K5M607_A0A2K5M607_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3N198_A0A2I3N198_PAPAN_9555 and tr_A0A2K6E0R1_A0A2K6E0R1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A151M040_A0A151M040_ALLMI_8496 and tr_A0A1U8DGE3_A0A1U8DGE3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MR48_A0A151MR48_ALLMI_8496 and tr_A0A1U8DW70_A0A1U8DW70_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N9S6_A0A151N9S6_ALLMI_8496 and tr_A0A1U7RLC9_A0A1U7RLC9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NBA8_A0A151NBA8_ALLMI_8496 and tr_A0A1U8D4X7_A0A1U8D4X7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151P2R2_A0A151P2R2_ALLMI_8496 and tr_A0A1U7SXW4_A0A1U7SXW4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151PDF4_A0A151PDF4_ALLMI_8496 and tr_A0A1U7SA41_A0A1U7SA41_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3PTK9_A0A0Q3PTK9_AMAAE_12930 and tr_A0A091IY83_A0A091IY83_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A0Q3PTK9_A0A0Q3PTK9_AMAAE_12930 and tr_A0A091V7H5_A0A091V7H5_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A0Q3PTK9_A0A0Q3PTK9_AMAAE_12930 and tr_A0A2I0LL63_A0A2I0LL63_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A0Q3PTK9_A0A0Q3PTK9_AMAAE_12930 and tr_A0A1V4L0R0_A0A1V4L0R0_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A091JHZ5_A0A091JHZ5_EGRGA_188379 and tr_A0A091VHS0_A0A091VHS0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JHZ5_A0A091JHZ5_EGRGA_188379 and tr_A0A087QWN3_A0A087QWN3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JHZ5_A0A091JHZ5_EGRGA_188379 and tr_A0A093HSP7_A0A093HSP7_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091JHZ5_A0A091JHZ5_EGRGA_188379 and tr_A0A0A0AK53_A0A0A0AK53_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JHZ5_A0A091JHZ5_EGRGA_188379 and tr_A0A091HT82_A0A091HT82_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091UQC8_A0A091UQC8_NIPNI_128390 and tr_A0A0A0AT46_A0A0A0AT46_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091UQC8_A0A091UQC8_NIPNI_128390 and tr_A0A2I0MCV2_A0A2I0MCV2_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A2I0MDA3_A0A2I0MDA3_COLLI_8932 and tr_A0A1V4JE67_A0A1V4JE67_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MGA0_A0A2I0MGA0_COLLI_8932 and tr_A0A1V4K5X3_A0A1V4K5X3_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A151WYK8_A0A151WYK8_9HYME_64791 and tr_A0A195CWR9_A0A195CWR9_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A195DNC4_A0A195DNC4_9HYME_471704 and tr_A0A195BNA1_A0A195BNA1_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A195DNC4_A0A195DNC4_9HYME_471704 and tr_A0A195EYZ1_A0A195EYZ1_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1S3PIX7_A0A1S3PIX7_SALSA_8030 and tr_A0A1S3PIZ1_A0A1S3PIZ1_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3PL33_A0A1S3PL33_SALSA_8030 and tr_A0A060WVR1_A0A060WVR1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3QU53_A0A1S3QU53_SALSA_8030 and tr_A0A060YR01_A0A060YR01_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1L8EPE2_A0A1L8EPE2_XENLA_8355 and tr_A0A1L8EWI9_A0A1L8EWI9_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1U8CA51_A0A1U8CA51_MESAU_10036 and sp_Q9JMH4_COHA1_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A3Q0CQZ0_A0A3Q0CQZ0_MESAU_10036 and tr_D0G6X2_D0G6X2_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A226MT48_A0A226MT48_CALSU_9009 and tr_A0A226PJX0_A0A226PJX0_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MTY1_A0A226MTY1_CALSU_9009 and tr_A0A226PPF8_A0A226PPF8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226N6L0_A0A226N6L0_CALSU_9009 and tr_A0A226NTM4_A0A226NTM4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0QP39_A0A2D0QP39_ICTPU_7998 and tr_A0A2D0QQS3_A0A2D0QQS3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QP39_A0A2D0QP39_ICTPU_7998 and tr_A0A2D0QRG5_A0A2D0QRG5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QT15_A0A2D0QT15_ICTPU_7998 and tr_A0A2D0QTC6_A0A2D0QTC6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5KM30_A0A2K5KM30_CERAT_9531 and tr_A0A2K5YW92_A0A2K5YW92_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U3V601_A0A2U3V601_TURTR_9739 and tr_A0A2Y9NFH1_A0A2Y9NFH1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V601_A0A2U3V601_TURTR_9739 and tr_A0A383YN56_A0A383YN56_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4B1X8_A0A2U4B1X8_TURTR_9739 and tr_A0A2Y9MMD5_A0A2Y9MMD5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B1X8_A0A2U4B1X8_TURTR_9739 and tr_A0A383Z5L9_A0A383Z5L9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3WJY7_A0A2U3WJY7_ODORO_9708 and tr_A0A2U3YHD9_A0A2U3YHD9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3YRY2_A0A2U3YRY2_LEPWE_9713 and tr_A0A2Y9IWV7_A0A2Y9IWV7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2Y9MP76_A0A2Y9MP76_DELLE_9749 and tr_A0A2Y9F4S9_A0A2Y9F4S9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9NMA3_A0A2Y9NMA3_DELLE_9749 and tr_A0A2Y9S3J2_A0A2Y9S3J2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9NMA3_A0A2Y9NMA3_DELLE_9749 and tr_A0A384B4D8_A0A384B4D8_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9Q568_A0A2Y9Q568_DELLE_9749 and tr_A0A383ZC41_A0A383ZC41_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9FDK6_A0A2Y9FDK6_PHYCD_9755 and tr_A0A383YW70_A0A383YW70_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 249 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMI3/3_mltree/Q6ZMI3.raxml.reduced.phy Alignment comprises 1 partitions and 41 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 41 / 41 Gaps: 5.55 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMI3/3_mltree/Q6ZMI3.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 41 / 3280 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -76915.580427] Initial branch length optimization [00:00:01 -63312.955427] Model parameter optimization (eps = 10.000000) [00:00:11 -63047.340974] AUTODETECT spr round 1 (radius: 5) [00:01:21 -44591.735371] AUTODETECT spr round 2 (radius: 10) [00:02:40 -35322.094369] AUTODETECT spr round 3 (radius: 15) [00:04:07 -31350.094248] AUTODETECT spr round 4 (radius: 20) [00:05:41 -26933.032705] AUTODETECT spr round 5 (radius: 25) [00:07:17 -24304.400565] SPR radius for FAST iterations: 25 (autodetect) [00:07:17 -24304.400565] Model parameter optimization (eps = 3.000000) [00:07:27 -24273.795951] FAST spr round 1 (radius: 25) [00:08:53 -20350.281797] FAST spr round 2 (radius: 25) [00:10:08 -20032.901783] FAST spr round 3 (radius: 25) [00:11:17 -20001.750031] FAST spr round 4 (radius: 25) [00:12:24 -19999.611720] FAST spr round 5 (radius: 25) [00:13:29 -19995.730952] FAST spr round 6 (radius: 25) [00:14:33 -19995.728972] Model parameter optimization (eps = 1.000000) [00:14:40 -19992.805312] SLOW spr round 1 (radius: 5) [00:15:54 -19979.917053] SLOW spr round 2 (radius: 5) [00:17:07 -19979.914723] SLOW spr round 3 (radius: 10) [00:18:22 -19972.511014] SLOW spr round 4 (radius: 5) [00:19:47 -19964.963583] SLOW spr round 5 (radius: 5) [00:21:04 -19964.849008] SLOW spr round 6 (radius: 5) [00:22:19 -19964.848976] SLOW spr round 7 (radius: 10) [00:23:32 -19964.848916] SLOW spr round 8 (radius: 15) [00:25:04 -19954.704103] SLOW spr round 9 (radius: 5) [00:26:32 -19951.300329] SLOW spr round 10 (radius: 5) [00:27:52 -19949.605756] SLOW spr round 11 (radius: 5) [00:29:09 -19948.176834] SLOW spr round 12 (radius: 5) [00:30:21 -19948.174181] SLOW spr round 13 (radius: 10) [00:31:35 -19946.519250] SLOW spr round 14 (radius: 5) [00:32:59 -19945.235436] SLOW spr round 15 (radius: 5) [00:34:15 -19945.233843] SLOW spr round 16 (radius: 10) [00:35:29 -19941.226954] SLOW spr round 17 (radius: 5) [00:36:51 -19941.226929] SLOW spr round 18 (radius: 10) [00:38:08 -19941.226920] SLOW spr round 19 (radius: 15) [00:39:37 -19930.385730] SLOW spr round 20 (radius: 5) [00:41:02 -19925.265747] SLOW spr round 21 (radius: 5) [00:42:20 -19925.263849] SLOW spr round 22 (radius: 10) [00:43:36 -19925.263005] SLOW spr round 23 (radius: 15) [00:45:04 -19925.262637] SLOW spr round 24 (radius: 20) [00:46:48 -19923.331710] SLOW spr round 25 (radius: 5) [00:48:17 -19912.097991] SLOW spr round 26 (radius: 5) [00:49:38 -19909.388181] SLOW spr round 27 (radius: 5) [00:50:52 -19909.388135] SLOW spr round 28 (radius: 10) [00:52:07 -19900.341204] SLOW spr round 29 (radius: 5) [00:53:31 -19898.500979] SLOW spr round 30 (radius: 5) [00:54:48 -19898.177835] SLOW spr round 31 (radius: 5) [00:56:02 -19898.175853] SLOW spr round 32 (radius: 10) [00:57:15 -19898.175523] SLOW spr round 33 (radius: 15) [00:58:45 -19898.175438] SLOW spr round 34 (radius: 20) [01:00:32 -19897.975574] SLOW spr round 35 (radius: 5) [01:01:57 -19897.975349] SLOW spr round 36 (radius: 10) [01:03:17 -19897.975330] SLOW spr round 37 (radius: 15) [01:04:45 -19897.452847] SLOW spr round 38 (radius: 5) [01:06:10 -19897.443639] SLOW spr round 39 (radius: 10) [01:07:29 -19897.443624] SLOW spr round 40 (radius: 15) [01:08:56 -19897.443621] SLOW spr round 41 (radius: 20) [01:10:44 -19897.382138] SLOW spr round 42 (radius: 25) [01:12:49 -19760.067905] SLOW spr round 43 (radius: 5) [01:14:19 -19703.160595] SLOW spr round 44 (radius: 5) [01:15:41 -19695.447648] SLOW spr round 45 (radius: 5) [01:16:58 -19690.864085] SLOW spr round 46 (radius: 5) [01:18:12 -19689.953800] SLOW spr round 47 (radius: 5) [01:19:24 -19689.953667] SLOW spr round 48 (radius: 10) [01:20:38 -19679.998760] SLOW spr round 49 (radius: 5) [01:22:02 -19678.284502] SLOW spr round 50 (radius: 5) [01:23:18 -19678.284004] SLOW spr round 51 (radius: 10) [01:24:33 -19678.283931] SLOW spr round 52 (radius: 15) [01:26:02 -19666.823317] SLOW spr round 53 (radius: 5) [01:27:28 -19666.823312] SLOW spr round 54 (radius: 10) [01:28:50 -19666.823311] SLOW spr round 55 (radius: 15) [01:30:19 -19666.823310] SLOW spr round 56 (radius: 20) [01:32:08 -19664.999992] SLOW spr round 57 (radius: 5) [01:33:36 -19664.022588] SLOW spr round 58 (radius: 5) [01:34:55 -19664.022561] SLOW spr round 59 (radius: 10) [01:36:11 -19664.022561] SLOW spr round 60 (radius: 15) [01:37:41 -19664.022561] SLOW spr round 61 (radius: 20) [01:39:28 -19664.022561] SLOW spr round 62 (radius: 25) [01:41:26 -19662.155068] SLOW spr round 63 (radius: 5) [01:42:54 -19662.153424] SLOW spr round 64 (radius: 10) [01:44:16 -19662.153424] SLOW spr round 65 (radius: 15) [01:45:44 -19662.153424] SLOW spr round 66 (radius: 20) [01:47:30 -19662.153424] SLOW spr round 67 (radius: 25) [01:49:27 -19662.153424] Model parameter optimization (eps = 0.100000) [01:49:31] ML tree search #1, logLikelihood: -19662.012393 [01:49:31 -76358.331196] Initial branch length optimization [01:49:32 -62956.348127] Model parameter optimization (eps = 10.000000) [01:49:49 -62701.516877] AUTODETECT spr round 1 (radius: 5) [01:51:00 -45477.172048] AUTODETECT spr round 2 (radius: 10) [01:52:20 -34711.566792] AUTODETECT spr round 3 (radius: 15) [01:53:47 -29179.018177] AUTODETECT spr round 4 (radius: 20) [01:55:16 -26772.236479] AUTODETECT spr round 5 (radius: 25) [01:56:50 -25234.331021] SPR radius for FAST iterations: 25 (autodetect) [01:56:50 -25234.331021] Model parameter optimization (eps = 3.000000) [01:56:57 -25168.806065] FAST spr round 1 (radius: 25) [01:58:20 -21795.740250] FAST spr round 2 (radius: 25) [01:59:32 -21127.034842] FAST spr round 3 (radius: 25) [02:00:41 -21019.318663] FAST spr round 4 (radius: 25) [02:01:50 -21007.063676] FAST spr round 5 (radius: 25) [02:02:56 -21001.664475] FAST spr round 6 (radius: 25) [02:04:02 -21001.325021] FAST spr round 7 (radius: 25) [02:05:06 -21001.324979] Model parameter optimization (eps = 1.000000) [02:05:12 -21000.996273] SLOW spr round 1 (radius: 5) [02:06:27 -20989.855051] SLOW spr round 2 (radius: 5) [02:07:43 -20989.229200] SLOW spr round 3 (radius: 5) [02:08:57 -20989.032769] SLOW spr round 4 (radius: 5) [02:10:10 -20989.031549] SLOW spr round 5 (radius: 10) [02:11:24 -20987.254995] SLOW spr round 6 (radius: 5) [02:12:48 -20986.702964] SLOW spr round 7 (radius: 5) [02:14:07 -20986.702330] SLOW spr round 8 (radius: 10) [02:15:22 -20986.701960] SLOW spr round 9 (radius: 15) [02:16:52 -20983.832174] SLOW spr round 10 (radius: 5) [02:18:20 -20982.313512] SLOW spr round 11 (radius: 5) [02:19:40 -20982.313027] SLOW spr round 12 (radius: 10) [02:20:55 -20982.312729] SLOW spr round 13 (radius: 15) [02:22:23 -20982.312515] SLOW spr round 14 (radius: 20) [02:24:06 -20973.253571] SLOW spr round 15 (radius: 5) [02:25:34 -20972.335983] SLOW spr round 16 (radius: 5) [02:26:55 -20972.334618] SLOW spr round 17 (radius: 10) [02:28:12 -20965.334787] SLOW spr round 18 (radius: 5) [02:29:36 -20912.342487] SLOW spr round 19 (radius: 5) [02:30:57 -20912.341620] SLOW spr round 20 (radius: 10) [02:32:12 -20912.341570] SLOW spr round 21 (radius: 15) [02:33:41 -20912.341547] SLOW spr round 22 (radius: 20) [02:35:23 -20912.341526] SLOW spr round 23 (radius: 25) [02:37:16 -20752.155271] SLOW spr round 24 (radius: 5) [02:38:46 -20672.183398] SLOW spr round 25 (radius: 5) [02:40:07 -20664.922912] SLOW spr round 26 (radius: 5) [02:41:23 -20664.767378] SLOW spr round 27 (radius: 5) [02:42:37 -20664.767311] SLOW spr round 28 (radius: 10) [02:43:51 -20664.767293] SLOW spr round 29 (radius: 15) [02:45:19 -20662.511527] SLOW spr round 30 (radius: 5) [02:46:45 -20660.008471] SLOW spr round 31 (radius: 5) [02:48:04 -20660.007966] SLOW spr round 32 (radius: 10) [02:49:20 -20659.275467] SLOW spr round 33 (radius: 5) [02:50:43 -20659.243224] SLOW spr round 34 (radius: 10) [02:51:59 -20659.242874] SLOW spr round 35 (radius: 15) [02:53:26 -20659.242806] SLOW spr round 36 (radius: 20) [02:55:13 -20655.500244] SLOW spr round 37 (radius: 5) [02:56:42 -20651.932372] SLOW spr round 38 (radius: 5) [02:58:02 -20650.960401] SLOW spr round 39 (radius: 5) [02:59:19 -20650.959155] SLOW spr round 40 (radius: 10) [03:00:35 -20649.945575] SLOW spr round 41 (radius: 5) [03:02:00 -20649.942698] SLOW spr round 42 (radius: 10) [03:03:17 -20649.942265] SLOW spr round 43 (radius: 15) [03:04:48 -20646.277295] SLOW spr round 44 (radius: 5) [03:06:16 -20644.576994] SLOW spr round 45 (radius: 5) [03:07:36 -20644.569915] SLOW spr round 46 (radius: 10) [03:08:52 -20644.568783] SLOW spr round 47 (radius: 15) [03:10:22 -20642.330010] SLOW spr round 48 (radius: 5) [03:11:48 -20642.329971] SLOW spr round 49 (radius: 10) [03:13:08 -20642.329971] SLOW spr round 50 (radius: 15) [03:14:36 -20642.329971] SLOW spr round 51 (radius: 20) [03:16:27 -20594.514854] SLOW spr round 52 (radius: 5) [03:17:56 -20582.835093] SLOW spr round 53 (radius: 5) [03:19:15 -20582.833318] SLOW spr round 54 (radius: 10) [03:20:31 -20582.832183] SLOW spr round 55 (radius: 15) [03:22:00 -20582.442525] SLOW spr round 56 (radius: 5) [03:23:25 -20582.442028] SLOW spr round 57 (radius: 10) [03:24:44 -20582.441847] SLOW spr round 58 (radius: 15) [03:26:12 -20582.441760] SLOW spr round 59 (radius: 20) [03:28:00 -20582.441712] SLOW spr round 60 (radius: 25) [03:29:59 -20578.998722] SLOW spr round 61 (radius: 5) [03:31:27 -20578.974810] SLOW spr round 62 (radius: 10) [03:32:49 -20577.962211] SLOW spr round 63 (radius: 5) [03:34:14 -20577.866324] SLOW spr round 64 (radius: 10) [03:35:33 -20577.865456] SLOW spr round 65 (radius: 15) [03:37:04 -20577.865136] SLOW spr round 66 (radius: 20) [03:38:53 -20577.864880] SLOW spr round 67 (radius: 25) [03:40:53 -20577.864542] Model parameter optimization (eps = 0.100000) [03:40:57] ML tree search #2, logLikelihood: -20577.859277 [03:40:57 -76783.770503] Initial branch length optimization [03:40:58 -63429.868058] Model parameter optimization (eps = 10.000000) [03:41:12 -63145.522626] AUTODETECT spr round 1 (radius: 5) [03:42:25 -45308.344167] AUTODETECT spr round 2 (radius: 10) [03:43:47 -35773.866354] AUTODETECT spr round 3 (radius: 15) [03:45:18 -30025.016705] AUTODETECT spr round 4 (radius: 20) [03:46:51 -27232.663164] AUTODETECT spr round 5 (radius: 25) [03:48:31 -25381.489484] SPR radius for FAST iterations: 25 (autodetect) [03:48:31 -25381.489484] Model parameter optimization (eps = 3.000000) [03:48:42 -25337.846176] FAST spr round 1 (radius: 25) [03:50:11 -21427.344936] FAST spr round 2 (radius: 25) [03:51:28 -20912.289792] FAST spr round 3 (radius: 25) [03:52:40 -20689.358605] FAST spr round 4 (radius: 25) [03:53:49 -20566.592626] FAST spr round 5 (radius: 25) [03:54:58 -20431.136895] FAST spr round 6 (radius: 25) [03:56:07 -20394.413090] FAST spr round 7 (radius: 25) [03:57:15 -20388.390119] FAST spr round 8 (radius: 25) [03:58:20 -20388.390073] Model parameter optimization (eps = 1.000000) [03:58:28 -20385.674556] SLOW spr round 1 (radius: 5) [03:59:43 -20375.998287] SLOW spr round 2 (radius: 5) [04:00:58 -20373.487852] SLOW spr round 3 (radius: 5) [04:02:14 -20373.485263] SLOW spr round 4 (radius: 10) [04:03:29 -20373.449588] SLOW spr round 5 (radius: 15) [04:05:04 -20227.584625] SLOW spr round 6 (radius: 5) [04:06:34 -20210.415937] SLOW spr round 7 (radius: 5) [04:07:56 -20209.263138] SLOW spr round 8 (radius: 5) [04:09:14 -20209.263075] SLOW spr round 9 (radius: 10) [04:10:30 -20209.263062] SLOW spr round 10 (radius: 15) [04:11:59 -20209.263052] SLOW spr round 11 (radius: 20) [04:13:37 -20207.451375] SLOW spr round 12 (radius: 5) [04:15:04 -20207.445616] SLOW spr round 13 (radius: 10) [04:16:23 -20207.443561] SLOW spr round 14 (radius: 15) [04:17:51 -20207.132486] SLOW spr round 15 (radius: 5) [04:19:17 -20201.595522] SLOW spr round 16 (radius: 5) [04:20:36 -20200.486171] SLOW spr round 17 (radius: 5) [04:21:51 -20200.485775] SLOW spr round 18 (radius: 10) [04:23:05 -20200.485478] SLOW spr round 19 (radius: 15) [04:24:33 -20198.207875] SLOW spr round 20 (radius: 5) [04:25:58 -20197.865921] SLOW spr round 21 (radius: 5) [04:27:17 -20197.865834] SLOW spr round 22 (radius: 10) [04:28:31 -20197.865821] SLOW spr round 23 (radius: 15) [04:29:58 -20197.865817] SLOW spr round 24 (radius: 20) [04:31:36 -20197.865815] SLOW spr round 25 (radius: 25) [04:33:28 -20152.002094] SLOW spr round 26 (radius: 5) [04:34:59 -20129.978338] SLOW spr round 27 (radius: 5) [04:36:21 -20122.805699] SLOW spr round 28 (radius: 5) [04:37:40 -20023.213128] SLOW spr round 29 (radius: 5) [04:38:56 -19955.455339] SLOW spr round 30 (radius: 5) [04:40:11 -19847.824384] SLOW spr round 31 (radius: 5) [04:41:24 -19839.918159] SLOW spr round 32 (radius: 5) [04:42:36 -19838.203087] SLOW spr round 33 (radius: 5) [04:43:49 -19836.528546] SLOW spr round 34 (radius: 5) [04:45:00 -19836.526225] SLOW spr round 35 (radius: 10) [04:46:14 -19820.454875] SLOW spr round 36 (radius: 5) [04:47:39 -19814.555529] SLOW spr round 37 (radius: 5) [04:48:56 -19814.555098] SLOW spr round 38 (radius: 10) [04:50:11 -19795.803469] SLOW spr round 39 (radius: 5) [04:51:35 -19759.118624] SLOW spr round 40 (radius: 5) [04:52:54 -19742.065033] SLOW spr round 41 (radius: 5) [04:54:10 -19740.396508] SLOW spr round 42 (radius: 5) [04:55:22 -19740.396486] SLOW spr round 43 (radius: 10) [04:56:35 -19740.396485] SLOW spr round 44 (radius: 15) [04:58:09 -19717.269850] SLOW spr round 45 (radius: 5) [04:59:37 -19678.551347] SLOW spr round 46 (radius: 5) [05:00:56 -19676.340798] SLOW spr round 47 (radius: 5) [05:02:11 -19676.339239] SLOW spr round 48 (radius: 10) [05:03:24 -19676.338972] SLOW spr round 49 (radius: 15) [05:04:57 -19676.338839] SLOW spr round 50 (radius: 20) [05:06:44 -19624.757009] SLOW spr round 51 (radius: 5) [05:08:14 -19611.426345] SLOW spr round 52 (radius: 5) [05:09:34 -19611.378436] SLOW spr round 53 (radius: 10) [05:10:50 -19611.376603] SLOW spr round 54 (radius: 15) [05:12:22 -19611.375214] SLOW spr round 55 (radius: 20) [05:14:08 -19611.373891] SLOW spr round 56 (radius: 25) [05:16:08 -19570.489772] SLOW spr round 57 (radius: 5) [05:17:38 -19562.842176] SLOW spr round 58 (radius: 5) [05:19:01 -19557.786458] SLOW spr round 59 (radius: 5) [05:20:17 -19557.786440] SLOW spr round 60 (radius: 10) [05:21:32 -19557.786426] SLOW spr round 61 (radius: 15) [05:23:04 -19557.786417] SLOW spr round 62 (radius: 20) [05:24:50 -19557.786410] SLOW spr round 63 (radius: 25) [05:26:48 -19553.916594] SLOW spr round 64 (radius: 5) [05:28:16 -19553.828104] SLOW spr round 65 (radius: 10) [05:29:37 -19553.827732] SLOW spr round 66 (radius: 15) [05:31:07 -19553.827653] SLOW spr round 67 (radius: 20) [05:32:53 -19553.827632] SLOW spr round 68 (radius: 25) [05:34:50 -19553.341731] SLOW spr round 69 (radius: 5) [05:36:19 -19549.236249] SLOW spr round 70 (radius: 5) [05:37:40 -19549.235757] SLOW spr round 71 (radius: 10) [05:38:55 -19549.235741] SLOW spr round 72 (radius: 15) [05:40:25 -19548.487045] SLOW spr round 73 (radius: 5) [05:41:50 -19548.486920] SLOW spr round 74 (radius: 10) [05:43:08 -19548.486917] SLOW spr round 75 (radius: 15) [05:44:37 -19547.752273] SLOW spr round 76 (radius: 5) [05:46:03 -19545.835888] SLOW spr round 77 (radius: 5) [05:47:21 -19545.835787] SLOW spr round 78 (radius: 10) [05:48:36 -19545.835787] SLOW spr round 79 (radius: 15) [05:50:08 -19545.835787] SLOW spr round 80 (radius: 20) [05:51:53 -19545.835787] SLOW spr round 81 (radius: 25) [05:53:51 -19545.835787] Model parameter optimization (eps = 0.100000) [05:53:55] ML tree search #3, logLikelihood: -19545.808087 [05:53:55 -77166.440834] Initial branch length optimization [05:53:56 -63621.955286] Model parameter optimization (eps = 10.000000) [05:54:09 -63377.809776] AUTODETECT spr round 1 (radius: 5) [05:55:23 -45445.360216] AUTODETECT spr round 2 (radius: 10) [05:56:44 -35782.399834] AUTODETECT spr round 3 (radius: 15) [05:58:14 -30832.304682] AUTODETECT spr round 4 (radius: 20) [05:59:55 -27340.383516] AUTODETECT spr round 5 (radius: 25) [06:01:48 -24410.143475] SPR radius for FAST iterations: 25 (autodetect) [06:01:48 -24410.143475] Model parameter optimization (eps = 3.000000) [06:01:55 -24392.113814] FAST spr round 1 (radius: 25) [06:03:26 -20105.760179] FAST spr round 2 (radius: 25) [06:04:41 -19729.168549] FAST spr round 3 (radius: 25) [06:05:52 -19653.950724] FAST spr round 4 (radius: 25) [06:07:01 -19652.431787] FAST spr round 5 (radius: 25) [06:08:07 -19652.419985] Model parameter optimization (eps = 1.000000) [06:08:14 -19649.356965] SLOW spr round 1 (radius: 5) [06:09:30 -19641.903987] SLOW spr round 2 (radius: 5) [06:10:46 -19641.399737] SLOW spr round 3 (radius: 5) [06:12:00 -19641.399203] SLOW spr round 4 (radius: 10) [06:13:15 -19640.673245] SLOW spr round 5 (radius: 5) [06:14:42 -19640.672692] SLOW spr round 6 (radius: 10) [06:16:06 -19636.124381] SLOW spr round 7 (radius: 5) [06:17:32 -19635.224544] SLOW spr round 8 (radius: 5) [06:18:51 -19635.223793] SLOW spr round 9 (radius: 10) [06:20:09 -19635.223726] SLOW spr round 10 (radius: 15) [06:21:42 -19629.247934] SLOW spr round 11 (radius: 5) [06:23:15 -19628.868885] SLOW spr round 12 (radius: 5) [06:24:38 -19628.868404] SLOW spr round 13 (radius: 10) [06:25:57 -19623.928703] SLOW spr round 14 (radius: 5) [06:27:25 -19623.182740] SLOW spr round 15 (radius: 5) [06:28:43 -19623.182488] SLOW spr round 16 (radius: 10) [06:30:00 -19623.182464] SLOW spr round 17 (radius: 15) [06:31:30 -19623.182450] SLOW spr round 18 (radius: 20) [06:33:13 -19616.910049] SLOW spr round 19 (radius: 5) [06:34:44 -19612.788323] SLOW spr round 20 (radius: 5) [06:36:06 -19612.746552] SLOW spr round 21 (radius: 10) [06:37:22 -19612.743365] SLOW spr round 22 (radius: 15) [06:38:52 -19609.278774] SLOW spr round 23 (radius: 5) [06:40:22 -19606.592238] SLOW spr round 24 (radius: 5) [06:41:43 -19606.592033] SLOW spr round 25 (radius: 10) [06:42:59 -19606.212612] SLOW spr round 26 (radius: 5) [06:44:23 -19606.212610] SLOW spr round 27 (radius: 10) [06:45:40 -19606.212609] SLOW spr round 28 (radius: 15) [06:47:09 -19606.212608] SLOW spr round 29 (radius: 20) [06:48:52 -19606.212606] SLOW spr round 30 (radius: 25) [06:50:42 -19606.212605] Model parameter optimization (eps = 0.100000) [06:50:46] ML tree search #4, logLikelihood: -19606.079403 [06:50:46 -76431.639123] Initial branch length optimization [06:50:48 -63219.724112] Model parameter optimization (eps = 10.000000) [06:51:08 -62819.578689] AUTODETECT spr round 1 (radius: 5) [06:52:18 -45043.563351] AUTODETECT spr round 2 (radius: 10) [06:53:37 -34967.341662] AUTODETECT spr round 3 (radius: 15) [06:55:01 -28858.705794] AUTODETECT spr round 4 (radius: 20) [06:56:38 -25816.300448] AUTODETECT spr round 5 (radius: 25) [06:58:15 -24618.184801] SPR radius for FAST iterations: 25 (autodetect) [06:58:15 -24618.184801] Model parameter optimization (eps = 3.000000) [06:58:25 -24593.491573] FAST spr round 1 (radius: 25) [06:59:57 -21242.881115] FAST spr round 2 (radius: 25) [07:01:14 -20599.111005] FAST spr round 3 (radius: 25) [07:02:27 -20170.923415] FAST spr round 4 (radius: 25) [07:03:39 -20062.480821] FAST spr round 5 (radius: 25) [07:04:48 -20061.354738] FAST spr round 6 (radius: 25) [07:05:56 -20061.354354] Model parameter optimization (eps = 1.000000) [07:06:00 -20060.621797] SLOW spr round 1 (radius: 5) [07:07:20 -20051.421601] SLOW spr round 2 (radius: 5) [07:08:40 -20047.303654] SLOW spr round 3 (radius: 5) [07:09:57 -20047.302642] SLOW spr round 4 (radius: 10) [07:11:19 -20042.808006] SLOW spr round 5 (radius: 5) [07:12:56 -20040.120026] SLOW spr round 6 (radius: 5) [07:14:23 -20039.141088] SLOW spr round 7 (radius: 5) [07:15:43 -20039.139423] SLOW spr round 8 (radius: 10) [07:17:02 -20034.136181] SLOW spr round 9 (radius: 5) [07:18:35 -20033.344591] SLOW spr round 10 (radius: 5) [07:19:59 -20033.343896] SLOW spr round 11 (radius: 10) [07:21:18 -20033.343891] SLOW spr round 12 (radius: 15) [07:22:59 -20031.924611] SLOW spr round 13 (radius: 5) [07:24:34 -20031.924430] SLOW spr round 14 (radius: 10) [07:26:00 -20031.447544] SLOW spr round 15 (radius: 5) [07:27:31 -20031.051995] SLOW spr round 16 (radius: 5) [07:28:54 -20031.050573] SLOW spr round 17 (radius: 10) [07:30:14 -20031.050488] SLOW spr round 18 (radius: 15) [07:31:53 -20031.050480] SLOW spr round 19 (radius: 20) [07:33:56 -19882.005043] SLOW spr round 20 (radius: 5) [07:35:40 -19778.888286] SLOW spr round 21 (radius: 5) [07:37:14 -19773.577605] SLOW spr round 22 (radius: 5) [07:38:38 -19773.318152] SLOW spr round 23 (radius: 5) [07:39:58 -19773.315859] SLOW spr round 24 (radius: 10) [07:41:18 -19773.315245] SLOW spr round 25 (radius: 15) [07:43:06 -19771.882811] SLOW spr round 26 (radius: 5) [07:44:47 -19770.355538] SLOW spr round 27 (radius: 5) [07:46:17 -19770.355309] SLOW spr round 28 (radius: 10) [07:47:41 -19770.355305] SLOW spr round 29 (radius: 15) [07:49:26 -19770.355305] SLOW spr round 30 (radius: 20) [07:51:36 -19763.049698] SLOW spr round 31 (radius: 5) [07:53:17 -19755.292646] SLOW spr round 32 (radius: 5) [07:54:48 -19755.292646] SLOW spr round 33 (radius: 10) [07:56:11 -19755.292646] SLOW spr round 34 (radius: 15) [07:57:56 -19755.141310] SLOW spr round 35 (radius: 5) [07:59:35 -19755.141310] SLOW spr round 36 (radius: 10) [08:01:04 -19755.141310] SLOW spr round 37 (radius: 15) [08:02:47 -19755.141310] SLOW spr round 38 (radius: 20) [08:04:56 -19755.065576] SLOW spr round 39 (radius: 25) [08:07:34 -19740.094298] SLOW spr round 40 (radius: 5) [08:09:17 -19739.318100] SLOW spr round 41 (radius: 5) [08:10:47 -19739.318016] SLOW spr round 42 (radius: 10) [08:12:11 -19723.839729] SLOW spr round 43 (radius: 5) [08:13:48 -19722.760489] SLOW spr round 44 (radius: 5) [08:15:15 -19722.223608] SLOW spr round 45 (radius: 5) [08:16:36 -19722.223558] SLOW spr round 46 (radius: 10) [08:17:56 -19722.223558] SLOW spr round 47 (radius: 15) [08:19:41 -19720.742876] SLOW spr round 48 (radius: 5) [08:21:20 -19720.742628] SLOW spr round 49 (radius: 10) [08:22:47 -19720.742621] SLOW spr round 50 (radius: 15) [08:24:28 -19720.742621] SLOW spr round 51 (radius: 20) [08:26:39 -19720.742621] SLOW spr round 52 (radius: 25) [08:29:15 -19720.742621] Model parameter optimization (eps = 0.100000) [08:29:19] ML tree search #5, logLikelihood: -19720.655863 [08:29:19 -77109.060189] Initial branch length optimization [08:29:20 -63488.730186] Model parameter optimization (eps = 10.000000) [08:29:33 -63198.164353] AUTODETECT spr round 1 (radius: 5) [08:30:44 -44890.268930] AUTODETECT spr round 2 (radius: 10) [08:32:03 -34001.047298] AUTODETECT spr round 3 (radius: 15) [08:33:28 -30409.254410] AUTODETECT spr round 4 (radius: 20) [08:34:58 -27569.121719] AUTODETECT spr round 5 (radius: 25) [08:36:38 -26277.009453] SPR radius for FAST iterations: 25 (autodetect) [08:36:38 -26277.009453] Model parameter optimization (eps = 3.000000) [08:36:45 -26216.930123] FAST spr round 1 (radius: 25) [08:38:15 -21369.544468] FAST spr round 2 (radius: 25) [08:39:29 -20281.915328] FAST spr round 3 (radius: 25) [08:40:39 -19767.191776] FAST spr round 4 (radius: 25) [08:41:46 -19626.812127] FAST spr round 5 (radius: 25) [08:42:53 -19581.630708] FAST spr round 6 (radius: 25) [08:43:57 -19579.038320] FAST spr round 7 (radius: 25) [08:45:01 -19577.299346] FAST spr round 8 (radius: 25) [08:46:04 -19577.299340] Model parameter optimization (eps = 1.000000) [08:46:10 -19575.920397] SLOW spr round 1 (radius: 5) [08:47:24 -19569.862523] SLOW spr round 2 (radius: 5) [08:48:37 -19569.265202] SLOW spr round 3 (radius: 5) [08:49:49 -19568.590949] SLOW spr round 4 (radius: 5) [08:51:00 -19568.590037] SLOW spr round 5 (radius: 10) [08:52:13 -19568.565048] SLOW spr round 6 (radius: 15) [08:53:44 -19564.195289] SLOW spr round 7 (radius: 5) [08:55:08 -19563.101935] SLOW spr round 8 (radius: 5) [08:56:26 -19563.101670] SLOW spr round 9 (radius: 10) [08:57:40 -19562.700831] SLOW spr round 10 (radius: 5) [08:59:02 -19562.700634] SLOW spr round 11 (radius: 10) [09:00:18 -19562.700455] SLOW spr round 12 (radius: 15) [09:01:45 -19562.700286] SLOW spr round 13 (radius: 20) [09:03:27 -19549.608164] SLOW spr round 14 (radius: 5) [09:04:54 -19548.205136] SLOW spr round 15 (radius: 5) [09:06:13 -19548.204965] SLOW spr round 16 (radius: 10) [09:07:29 -19548.204785] SLOW spr round 17 (radius: 15) [09:08:59 -19548.204592] SLOW spr round 18 (radius: 20) [09:10:44 -19548.204381] SLOW spr round 19 (radius: 25) [09:12:37 -19548.204148] Model parameter optimization (eps = 0.100000) [09:12:43] ML tree search #6, logLikelihood: -19548.098588 [09:12:43 -77037.645012] Initial branch length optimization [09:12:44 -63559.378869] Model parameter optimization (eps = 10.000000) [09:13:01 -63235.260360] AUTODETECT spr round 1 (radius: 5) [09:14:13 -44518.302106] AUTODETECT spr round 2 (radius: 10) [09:15:34 -34599.437907] AUTODETECT spr round 3 (radius: 15) [09:17:07 -30255.009354] AUTODETECT spr round 4 (radius: 20) [09:18:43 -27174.368187] AUTODETECT spr round 5 (radius: 25) [09:20:32 -25677.281875] SPR radius for FAST iterations: 25 (autodetect) [09:20:32 -25677.281875] Model parameter optimization (eps = 3.000000) [09:20:43 -25634.470595] FAST spr round 1 (radius: 25) [09:22:12 -21649.883059] FAST spr round 2 (radius: 25) [09:23:27 -21287.417290] FAST spr round 3 (radius: 25) [09:24:38 -21260.647243] FAST spr round 4 (radius: 25) [09:25:46 -21196.696943] FAST spr round 5 (radius: 25) [09:26:52 -21196.695129] Model parameter optimization (eps = 1.000000) [09:27:00 -21195.073718] SLOW spr round 1 (radius: 5) [09:28:15 -21178.970508] SLOW spr round 2 (radius: 5) [09:29:29 -21178.393079] SLOW spr round 3 (radius: 5) [09:30:41 -21178.392901] SLOW spr round 4 (radius: 10) [09:31:57 -21169.567391] SLOW spr round 5 (radius: 5) [09:33:24 -21161.345947] SLOW spr round 6 (radius: 5) [09:34:43 -21161.125382] SLOW spr round 7 (radius: 5) [09:36:00 -21160.540736] SLOW spr round 8 (radius: 5) [09:37:16 -21160.540569] SLOW spr round 9 (radius: 10) [09:38:32 -21160.540559] SLOW spr round 10 (radius: 15) [09:40:13 -21077.023167] SLOW spr round 11 (radius: 5) [09:41:43 -21062.282284] SLOW spr round 12 (radius: 5) [09:43:07 -21021.010628] SLOW spr round 13 (radius: 5) [09:44:25 -20925.805753] SLOW spr round 14 (radius: 5) [09:45:40 -20920.522817] SLOW spr round 15 (radius: 5) [09:46:53 -20919.726454] SLOW spr round 16 (radius: 5) [09:48:04 -20919.725568] SLOW spr round 17 (radius: 10) [09:49:19 -20908.094130] SLOW spr round 18 (radius: 5) [09:50:42 -20907.517368] SLOW spr round 19 (radius: 5) [09:51:58 -20907.517224] SLOW spr round 20 (radius: 10) [09:53:14 -20903.479385] SLOW spr round 21 (radius: 5) [09:54:36 -20903.478739] SLOW spr round 22 (radius: 10) [09:55:53 -20903.250673] SLOW spr round 23 (radius: 5) [09:57:15 -20903.250513] SLOW spr round 24 (radius: 10) [09:58:32 -20903.250447] SLOW spr round 25 (radius: 15) [10:00:05 -20864.367281] SLOW spr round 26 (radius: 5) [10:01:33 -20846.143608] SLOW spr round 27 (radius: 5) [10:02:52 -20845.430634] SLOW spr round 28 (radius: 5) [10:04:06 -20845.429750] SLOW spr round 29 (radius: 10) [10:05:20 -20845.429727] SLOW spr round 30 (radius: 15) [10:06:53 -20845.429688] SLOW spr round 31 (radius: 20) [10:08:47 -20840.561550] SLOW spr round 32 (radius: 5) [10:10:13 -20840.561438] SLOW spr round 33 (radius: 10) [10:11:33 -20837.767618] SLOW spr round 34 (radius: 5) [10:12:54 -20836.786330] SLOW spr round 35 (radius: 5) [10:14:10 -20836.785866] SLOW spr round 36 (radius: 10) [10:15:24 -20836.785839] SLOW spr round 37 (radius: 15) [10:16:56 -20836.785837] SLOW spr round 38 (radius: 20) [10:18:49 -20836.785837] SLOW spr round 39 (radius: 25) [10:21:04 -20819.353404] SLOW spr round 40 (radius: 5) [10:22:32 -20819.351122] SLOW spr round 41 (radius: 10) [10:23:53 -20817.144319] SLOW spr round 42 (radius: 5) [10:25:14 -20817.143714] SLOW spr round 43 (radius: 10) [10:26:30 -20815.636659] SLOW spr round 44 (radius: 5) [10:27:52 -20815.087116] SLOW spr round 45 (radius: 5) [10:29:08 -20815.087102] SLOW spr round 46 (radius: 10) [10:30:21 -20815.087102] SLOW spr round 47 (radius: 15) [10:31:54 -20815.087102] SLOW spr round 48 (radius: 20) [10:33:48 -20815.087102] SLOW spr round 49 (radius: 25) [10:36:04 -20813.961224] SLOW spr round 50 (radius: 5) [10:37:33 -20812.195916] SLOW spr round 51 (radius: 5) [10:38:55 -20810.685089] SLOW spr round 52 (radius: 5) [10:40:10 -20810.293283] SLOW spr round 53 (radius: 5) [10:41:24 -20808.919206] SLOW spr round 54 (radius: 5) [10:42:36 -20808.918939] SLOW spr round 55 (radius: 10) [10:43:48 -20808.918927] SLOW spr round 56 (radius: 15) [10:45:23 -20808.918926] SLOW spr round 57 (radius: 20) [10:47:21 -20372.326187] SLOW spr round 58 (radius: 5) [10:48:49 -20073.333388] SLOW spr round 59 (radius: 5) [10:50:09 -20013.324811] SLOW spr round 60 (radius: 5) [10:51:25 -20008.160073] SLOW spr round 61 (radius: 5) [10:52:38 -20008.159298] SLOW spr round 62 (radius: 10) [10:53:50 -20008.158757] SLOW spr round 63 (radius: 15) [10:55:19 -20002.431934] SLOW spr round 64 (radius: 5) [10:56:43 -20001.604334] SLOW spr round 65 (radius: 5) [10:58:01 -20001.303766] SLOW spr round 66 (radius: 5) [10:59:14 -20001.303428] SLOW spr round 67 (radius: 10) [11:00:26 -20000.085054] SLOW spr round 68 (radius: 5) [11:01:48 -19999.795089] SLOW spr round 69 (radius: 5) [11:03:04 -19999.794326] SLOW spr round 70 (radius: 10) [11:04:17 -19999.794176] SLOW spr round 71 (radius: 15) [11:05:45 -19999.794105] SLOW spr round 72 (radius: 20) [11:07:27 -19996.992477] SLOW spr round 73 (radius: 5) [11:08:52 -19995.700931] SLOW spr round 74 (radius: 5) [11:10:11 -19995.700683] SLOW spr round 75 (radius: 10) [11:11:25 -19995.700669] SLOW spr round 76 (radius: 15) [11:12:51 -19995.700661] SLOW spr round 77 (radius: 20) [11:14:32 -19995.700655] SLOW spr round 78 (radius: 25) [11:16:28 -19992.274618] SLOW spr round 79 (radius: 5) [11:17:58 -19991.278533] SLOW spr round 80 (radius: 5) [11:19:18 -19990.802825] SLOW spr round 81 (radius: 5) [11:20:35 -19990.427803] SLOW spr round 82 (radius: 5) [11:21:48 -19990.427678] SLOW spr round 83 (radius: 10) [11:23:00 -19990.427616] SLOW spr round 84 (radius: 15) [11:24:30 -19990.266212] SLOW spr round 85 (radius: 5) [11:25:55 -19989.856652] SLOW spr round 86 (radius: 5) [11:27:13 -19989.856564] SLOW spr round 87 (radius: 10) [11:28:26 -19989.856502] SLOW spr round 88 (radius: 15) [11:29:55 -19989.856442] SLOW spr round 89 (radius: 20) [11:31:37 -19976.599803] SLOW spr round 90 (radius: 5) [11:33:04 -19975.603947] SLOW spr round 91 (radius: 5) [11:34:24 -19975.603875] SLOW spr round 92 (radius: 10) [11:35:38 -19975.603816] SLOW spr round 93 (radius: 15) [11:37:06 -19975.603757] SLOW spr round 94 (radius: 20) [11:38:48 -19975.603699] SLOW spr round 95 (radius: 25) [11:40:47 -19972.465582] SLOW spr round 96 (radius: 5) [11:42:15 -19972.431627] SLOW spr round 97 (radius: 10) [11:43:35 -19972.429965] SLOW spr round 98 (radius: 15) [11:45:02 -19972.429416] SLOW spr round 99 (radius: 20) [11:46:45 -19968.808127] SLOW spr round 100 (radius: 5) [11:48:11 -19968.808020] SLOW spr round 101 (radius: 10) [11:49:31 -19968.807958] SLOW spr round 102 (radius: 15) [11:50:58 -19968.807899] SLOW spr round 103 (radius: 20) [11:52:43 -19967.177330] SLOW spr round 104 (radius: 5) [11:54:09 -19966.527018] SLOW spr round 105 (radius: 5) [11:55:29 -19966.526280] SLOW spr round 106 (radius: 10) [11:56:43 -19966.526205] SLOW spr round 107 (radius: 15) [11:58:12 -19966.526147] SLOW spr round 108 (radius: 20) [11:59:56 -19966.526089] SLOW spr round 109 (radius: 25) [12:01:56 -19966.526032] Model parameter optimization (eps = 0.100000) [12:02:03] ML tree search #7, logLikelihood: -19965.228953 [12:02:03 -76483.246180] Initial branch length optimization [12:02:04 -62982.672784] Model parameter optimization (eps = 10.000000) [12:02:19 -62681.992776] AUTODETECT spr round 1 (radius: 5) [12:03:29 -44543.622371] AUTODETECT spr round 2 (radius: 10) [12:04:49 -34000.038326] AUTODETECT spr round 3 (radius: 15) [12:06:16 -28791.648391] AUTODETECT spr round 4 (radius: 20) [12:07:50 -25917.945896] AUTODETECT spr round 5 (radius: 25) [12:09:34 -23528.509233] SPR radius for FAST iterations: 25 (autodetect) [12:09:34 -23528.509233] Model parameter optimization (eps = 3.000000) [12:09:46 -23498.157293] FAST spr round 1 (radius: 25) [12:11:08 -19867.069002] FAST spr round 2 (radius: 25) [12:12:19 -19649.718729] FAST spr round 3 (radius: 25) [12:13:26 -19629.780331] FAST spr round 4 (radius: 25) [12:14:32 -19628.730689] FAST spr round 5 (radius: 25) [12:15:35 -19628.730037] Model parameter optimization (eps = 1.000000) [12:15:39 -19627.560961] SLOW spr round 1 (radius: 5) [12:16:53 -19618.300212] SLOW spr round 2 (radius: 5) [12:18:06 -19617.680611] SLOW spr round 3 (radius: 5) [12:19:18 -19616.028671] SLOW spr round 4 (radius: 5) [12:20:30 -19616.027799] SLOW spr round 5 (radius: 10) [12:21:43 -19614.797860] SLOW spr round 6 (radius: 5) [12:23:06 -19614.669996] SLOW spr round 7 (radius: 5) [12:24:22 -19614.669991] SLOW spr round 8 (radius: 10) [12:25:37 -19614.132165] SLOW spr round 9 (radius: 5) [12:26:59 -19614.132145] SLOW spr round 10 (radius: 10) [12:28:16 -19614.132145] SLOW spr round 11 (radius: 15) [12:29:44 -19609.729722] SLOW spr round 12 (radius: 5) [12:31:10 -19609.729180] SLOW spr round 13 (radius: 10) [12:32:29 -19609.337927] SLOW spr round 14 (radius: 5) [12:33:50 -19609.136734] SLOW spr round 15 (radius: 5) [12:35:07 -19609.135815] SLOW spr round 16 (radius: 10) [12:36:22 -19609.135754] SLOW spr round 17 (radius: 15) [12:37:54 -19609.135750] SLOW spr round 18 (radius: 20) [12:39:41 -19607.289161] SLOW spr round 19 (radius: 5) [12:41:09 -19606.802357] SLOW spr round 20 (radius: 5) [12:42:30 -19606.802159] SLOW spr round 21 (radius: 10) [12:43:46 -19606.802158] SLOW spr round 22 (radius: 15) [12:45:15 -19606.802135] SLOW spr round 23 (radius: 20) [12:47:01 -19605.867040] SLOW spr round 24 (radius: 5) [12:48:28 -19605.865225] SLOW spr round 25 (radius: 10) [12:49:50 -19605.865162] SLOW spr round 26 (radius: 15) [12:51:18 -19605.865160] SLOW spr round 27 (radius: 20) [12:53:04 -19605.865159] SLOW spr round 28 (radius: 25) [12:55:01 -19604.090199] SLOW spr round 29 (radius: 5) [12:56:28 -19604.090121] SLOW spr round 30 (radius: 10) [12:57:49 -19604.090118] SLOW spr round 31 (radius: 15) [12:59:17 -19604.090118] SLOW spr round 32 (radius: 20) [13:01:02 -19603.561245] SLOW spr round 33 (radius: 5) [13:02:28 -19602.668036] SLOW spr round 34 (radius: 5) [13:03:48 -19602.667301] SLOW spr round 35 (radius: 10) [13:05:04 -19602.667298] SLOW spr round 36 (radius: 15) [13:06:34 -19602.667298] SLOW spr round 37 (radius: 20) [13:08:20 -19602.667298] SLOW spr round 38 (radius: 25) [13:10:20 -19602.667298] Model parameter optimization (eps = 0.100000) [13:10:28] ML tree search #8, logLikelihood: -19602.381350 [13:10:28 -76650.878903] Initial branch length optimization [13:10:29 -63178.005766] Model parameter optimization (eps = 10.000000) [13:10:39 -62903.420377] AUTODETECT spr round 1 (radius: 5) [13:11:53 -45279.558227] AUTODETECT spr round 2 (radius: 10) [13:13:12 -34696.679713] AUTODETECT spr round 3 (radius: 15) [13:14:46 -29061.562657] AUTODETECT spr round 4 (radius: 20) [13:16:21 -26896.807820] AUTODETECT spr round 5 (radius: 25) [13:17:59 -24996.594716] SPR radius for FAST iterations: 25 (autodetect) [13:17:59 -24996.594716] Model parameter optimization (eps = 3.000000) [13:18:10 -24973.629932] FAST spr round 1 (radius: 25) [13:19:40 -21171.364194] FAST spr round 2 (radius: 25) [13:20:54 -20533.068571] FAST spr round 3 (radius: 25) [13:22:05 -20073.929536] FAST spr round 4 (radius: 25) [13:23:14 -19850.797861] FAST spr round 5 (radius: 25) [13:24:23 -19802.434265] FAST spr round 6 (radius: 25) [13:25:29 -19801.161570] FAST spr round 7 (radius: 25) [13:26:35 -19801.160650] Model parameter optimization (eps = 1.000000) [13:26:41 -19788.640312] SLOW spr round 1 (radius: 5) [13:27:56 -19781.619685] SLOW spr round 2 (radius: 5) [13:29:11 -19779.948134] SLOW spr round 3 (radius: 5) [13:30:25 -19778.447146] SLOW spr round 4 (radius: 5) [13:31:39 -19777.789396] SLOW spr round 5 (radius: 5) [13:32:52 -19777.788528] SLOW spr round 6 (radius: 10) [13:34:10 -19770.827079] SLOW spr round 7 (radius: 5) [13:35:37 -19770.612218] SLOW spr round 8 (radius: 5) [13:36:57 -19770.610436] SLOW spr round 9 (radius: 10) [13:38:14 -19770.124542] SLOW spr round 10 (radius: 5) [13:39:40 -19768.697838] SLOW spr round 11 (radius: 5) [13:40:58 -19767.611613] SLOW spr round 12 (radius: 5) [13:42:12 -19767.594456] SLOW spr round 13 (radius: 10) [13:43:25 -19767.594406] SLOW spr round 14 (radius: 15) [13:44:56 -19755.223290] SLOW spr round 15 (radius: 5) [13:46:22 -19752.133115] SLOW spr round 16 (radius: 5) [13:47:40 -19752.133006] SLOW spr round 17 (radius: 10) [13:48:55 -19750.409888] SLOW spr round 18 (radius: 5) [13:50:17 -19748.669233] SLOW spr round 19 (radius: 5) [13:51:34 -19748.669021] SLOW spr round 20 (radius: 10) [13:52:47 -19748.669021] SLOW spr round 21 (radius: 15) [13:54:16 -19748.669019] SLOW spr round 22 (radius: 20) [13:55:59 -19724.006976] SLOW spr round 23 (radius: 5) [13:57:28 -19715.578459] SLOW spr round 24 (radius: 5) [13:58:48 -19714.585206] SLOW spr round 25 (radius: 5) [14:00:03 -19714.584819] SLOW spr round 26 (radius: 10) [14:01:16 -19714.230568] SLOW spr round 27 (radius: 5) [14:02:38 -19714.230510] SLOW spr round 28 (radius: 10) [14:03:55 -19714.230509] SLOW spr round 29 (radius: 15) [14:05:23 -19714.230509] SLOW spr round 30 (radius: 20) [14:07:05 -19711.863200] SLOW spr round 31 (radius: 5) [14:08:31 -19711.858399] SLOW spr round 32 (radius: 10) [14:09:51 -19711.857837] SLOW spr round 33 (radius: 15) [14:11:19 -19711.857775] SLOW spr round 34 (radius: 20) [14:13:00 -19711.857768] SLOW spr round 35 (radius: 25) [14:14:49 -19707.297655] SLOW spr round 36 (radius: 5) [14:16:17 -19705.254568] SLOW spr round 37 (radius: 5) [14:17:37 -19705.254030] SLOW spr round 38 (radius: 10) [14:18:52 -19705.253875] SLOW spr round 39 (radius: 15) [14:20:21 -19705.253810] SLOW spr round 40 (radius: 20) [14:22:03 -19705.253782] SLOW spr round 41 (radius: 25) [14:23:53 -19705.253770] Model parameter optimization (eps = 0.100000) [14:23:59] ML tree search #9, logLikelihood: -19704.160573 [14:23:59 -77168.379772] Initial branch length optimization [14:24:00 -63741.331546] Model parameter optimization (eps = 10.000000) [14:24:19 -63433.036312] AUTODETECT spr round 1 (radius: 5) [14:25:30 -45059.352537] AUTODETECT spr round 2 (radius: 10) [14:26:49 -34197.734938] AUTODETECT spr round 3 (radius: 15) [14:28:16 -29277.294704] AUTODETECT spr round 4 (radius: 20) [14:29:50 -26642.230642] AUTODETECT spr round 5 (radius: 25) [14:31:28 -25041.112162] SPR radius for FAST iterations: 25 (autodetect) [14:31:28 -25041.112162] Model parameter optimization (eps = 3.000000) [14:31:40 -25011.206056] FAST spr round 1 (radius: 25) [14:33:03 -21243.545791] FAST spr round 2 (radius: 25) [14:34:15 -20844.219219] FAST spr round 3 (radius: 25) [14:35:25 -20785.729293] FAST spr round 4 (radius: 25) [14:36:32 -20782.332144] FAST spr round 5 (radius: 25) [14:37:39 -20779.730087] FAST spr round 6 (radius: 25) [14:38:44 -20779.728710] Model parameter optimization (eps = 1.000000) [14:38:54 -20771.573791] SLOW spr round 1 (radius: 5) [14:40:09 -20759.534053] SLOW spr round 2 (radius: 5) [14:41:24 -20759.500795] SLOW spr round 3 (radius: 10) [14:42:41 -20759.283111] SLOW spr round 4 (radius: 5) [14:44:09 -20759.282527] SLOW spr round 5 (radius: 10) [14:45:29 -20759.282125] SLOW spr round 6 (radius: 15) [14:47:00 -20756.153607] SLOW spr round 7 (radius: 5) [14:48:29 -20750.762311] SLOW spr round 8 (radius: 5) [14:49:50 -20750.476314] SLOW spr round 9 (radius: 5) [14:51:07 -20750.476186] SLOW spr round 10 (radius: 10) [14:52:23 -20750.476140] SLOW spr round 11 (radius: 15) [14:53:54 -20744.800724] SLOW spr round 12 (radius: 5) [14:55:22 -20744.796666] SLOW spr round 13 (radius: 10) [14:56:42 -20744.796502] SLOW spr round 14 (radius: 15) [14:58:10 -20744.796464] SLOW spr round 15 (radius: 20) [14:59:51 -20738.525498] SLOW spr round 16 (radius: 5) [15:01:19 -20738.222635] SLOW spr round 17 (radius: 5) [15:02:39 -20738.222483] SLOW spr round 18 (radius: 10) [15:03:55 -20738.198151] SLOW spr round 19 (radius: 15) [15:05:22 -20738.198146] SLOW spr round 20 (radius: 20) [15:07:00 -20737.717010] SLOW spr round 21 (radius: 5) [15:08:27 -20737.717005] SLOW spr round 22 (radius: 10) [15:09:46 -20737.717004] SLOW spr round 23 (radius: 15) [15:11:12 -20737.717004] SLOW spr round 24 (radius: 20) [15:12:51 -20737.294137] SLOW spr round 25 (radius: 5) [15:14:19 -20735.839677] SLOW spr round 26 (radius: 5) [15:15:41 -20735.838638] SLOW spr round 27 (radius: 10) [15:16:58 -20735.838621] SLOW spr round 28 (radius: 15) [15:18:28 -20735.838620] SLOW spr round 29 (radius: 20) [15:20:07 -20735.770626] SLOW spr round 30 (radius: 25) [15:21:55 -20733.889707] SLOW spr round 31 (radius: 5) [15:23:27 -20725.454503] SLOW spr round 32 (radius: 5) [15:24:50 -20724.634501] SLOW spr round 33 (radius: 5) [15:26:07 -20724.633307] SLOW spr round 34 (radius: 10) [15:27:21 -20724.633191] SLOW spr round 35 (radius: 15) [15:28:51 -20724.633180] SLOW spr round 36 (radius: 20) [15:30:29 -20724.633179] SLOW spr round 37 (radius: 25) [15:32:17 -20724.633178] Model parameter optimization (eps = 0.100000) [15:32:24] ML tree search #10, logLikelihood: -20724.300244 [15:32:24 -76914.578937] Initial branch length optimization [15:32:25 -63643.509757] Model parameter optimization (eps = 10.000000) [15:32:36 -63347.138475] AUTODETECT spr round 1 (radius: 5) [15:33:48 -45573.035932] AUTODETECT spr round 2 (radius: 10) [15:35:08 -34546.504930] AUTODETECT spr round 3 (radius: 15) [15:36:36 -30419.440668] AUTODETECT spr round 4 (radius: 20) [15:38:03 -27124.195619] AUTODETECT spr round 5 (radius: 25) [15:39:40 -25264.645291] SPR radius for FAST iterations: 25 (autodetect) [15:39:40 -25264.645291] Model parameter optimization (eps = 3.000000) [15:39:49 -25214.027540] FAST spr round 1 (radius: 25) [15:41:14 -22144.690858] FAST spr round 2 (radius: 25) [15:42:27 -21784.076751] FAST spr round 3 (radius: 25) [15:43:38 -21493.596444] FAST spr round 4 (radius: 25) [15:44:51 -20961.217012] FAST spr round 5 (radius: 25) [15:46:02 -20734.281460] FAST spr round 6 (radius: 25) [15:47:12 -20546.218282] FAST spr round 7 (radius: 25) [15:48:20 -20337.932507] FAST spr round 8 (radius: 25) [15:49:27 -20318.159854] FAST spr round 9 (radius: 25) [15:50:32 -20318.159559] Model parameter optimization (eps = 1.000000) [15:50:35 -20317.416419] SLOW spr round 1 (radius: 5) [15:51:48 -20312.337591] SLOW spr round 2 (radius: 5) [15:53:00 -20311.354109] SLOW spr round 3 (radius: 5) [15:54:12 -20310.729677] SLOW spr round 4 (radius: 5) [15:55:23 -20307.437738] SLOW spr round 5 (radius: 5) [15:56:34 -20307.436298] SLOW spr round 6 (radius: 10) [15:57:48 -20305.971195] SLOW spr round 7 (radius: 5) [15:59:13 -20303.657287] SLOW spr round 8 (radius: 5) [16:00:30 -20303.656665] SLOW spr round 9 (radius: 10) [16:01:45 -20263.246546] SLOW spr round 10 (radius: 5) [16:03:12 -20089.526994] SLOW spr round 11 (radius: 5) [16:04:31 -20066.975444] SLOW spr round 12 (radius: 5) [16:05:47 -20039.987612] SLOW spr round 13 (radius: 5) [16:06:59 -20031.201440] SLOW spr round 14 (radius: 5) [16:08:09 -20031.201440] SLOW spr round 15 (radius: 10) [16:09:23 -19938.062838] SLOW spr round 16 (radius: 5) [16:10:48 -19933.577685] SLOW spr round 17 (radius: 5) [16:12:04 -19933.490560] SLOW spr round 18 (radius: 10) [16:13:19 -19931.975857] SLOW spr round 19 (radius: 5) [16:14:42 -19893.381954] SLOW spr round 20 (radius: 5) [16:16:00 -19891.523964] SLOW spr round 21 (radius: 5) [16:17:13 -19891.522758] SLOW spr round 22 (radius: 10) [16:18:25 -19891.522723] SLOW spr round 23 (radius: 15) [16:20:02 -19801.959503] SLOW spr round 24 (radius: 5) [16:21:29 -19727.739343] SLOW spr round 25 (radius: 5) [16:22:48 -19722.172764] SLOW spr round 26 (radius: 5) [16:24:01 -19722.172617] SLOW spr round 27 (radius: 10) [16:25:14 -19720.513000] SLOW spr round 28 (radius: 5) [16:26:35 -19720.512979] SLOW spr round 29 (radius: 10) [16:27:50 -19720.512978] SLOW spr round 30 (radius: 15) [16:29:19 -19717.975740] SLOW spr round 31 (radius: 5) [16:30:44 -19717.973634] SLOW spr round 32 (radius: 10) [16:32:02 -19717.972998] SLOW spr round 33 (radius: 15) [16:33:30 -19717.972833] SLOW spr round 34 (radius: 20) [16:35:27 -19681.962473] SLOW spr round 35 (radius: 5) [16:36:53 -19676.974381] SLOW spr round 36 (radius: 5) [16:38:12 -19676.915764] SLOW spr round 37 (radius: 10) [16:39:26 -19676.915643] SLOW spr round 38 (radius: 15) [16:40:54 -19676.915643] SLOW spr round 39 (radius: 20) [16:42:48 -19676.915643] SLOW spr round 40 (radius: 25) [16:45:09 -19657.030209] SLOW spr round 41 (radius: 5) [16:46:38 -19578.990438] SLOW spr round 42 (radius: 5) [16:48:01 -19459.947328] SLOW spr round 43 (radius: 5) [16:49:19 -19382.194644] SLOW spr round 44 (radius: 5) [16:50:31 -19379.170874] SLOW spr round 45 (radius: 5) [16:51:41 -19379.170784] SLOW spr round 46 (radius: 10) [16:52:53 -19374.426751] SLOW spr round 47 (radius: 5) [16:54:15 -19374.426721] SLOW spr round 48 (radius: 10) [16:55:31 -19371.529360] SLOW spr round 49 (radius: 5) [16:56:51 -19371.529206] SLOW spr round 50 (radius: 10) [16:58:07 -19371.529205] SLOW spr round 51 (radius: 15) [16:59:36 -19370.337744] SLOW spr round 52 (radius: 5) [17:01:01 -19370.337675] SLOW spr round 53 (radius: 10) [17:02:19 -19368.668253] SLOW spr round 54 (radius: 5) [17:03:39 -19368.668051] SLOW spr round 55 (radius: 10) [17:04:54 -19368.668050] SLOW spr round 56 (radius: 15) [17:06:22 -19368.668049] SLOW spr round 57 (radius: 20) [17:08:18 -19368.668049] SLOW spr round 58 (radius: 25) [17:10:40 -19367.562895] SLOW spr round 59 (radius: 5) [17:12:07 -19367.562260] SLOW spr round 60 (radius: 10) [17:13:27 -19367.562248] SLOW spr round 61 (radius: 15) [17:14:55 -19367.562248] SLOW spr round 62 (radius: 20) [17:16:52 -19367.561815] SLOW spr round 63 (radius: 25) [17:19:14 -19367.561815] Model parameter optimization (eps = 0.100000) [17:19:20] ML tree search #11, logLikelihood: -19367.176355 [17:19:20 -76869.668553] Initial branch length optimization [17:19:21 -63439.085907] Model parameter optimization (eps = 10.000000) [17:19:36 -63098.169681] AUTODETECT spr round 1 (radius: 5) [17:20:46 -44583.094299] AUTODETECT spr round 2 (radius: 10) [17:22:05 -35345.828279] AUTODETECT spr round 3 (radius: 15) [17:23:36 -30705.765598] AUTODETECT spr round 4 (radius: 20) [17:25:10 -28326.908120] AUTODETECT spr round 5 (radius: 25) [17:26:44 -27129.205002] SPR radius for FAST iterations: 25 (autodetect) [17:26:44 -27129.205002] Model parameter optimization (eps = 3.000000) [17:26:58 -27112.656687] FAST spr round 1 (radius: 25) [17:28:29 -22700.836576] FAST spr round 2 (radius: 25) [17:29:45 -21492.750154] FAST spr round 3 (radius: 25) [17:30:56 -21172.462133] FAST spr round 4 (radius: 25) [17:32:05 -21050.322426] FAST spr round 5 (radius: 25) [17:33:12 -21049.004912] FAST spr round 6 (radius: 25) [17:34:17 -21049.004455] Model parameter optimization (eps = 1.000000) [17:34:26 -21043.609236] SLOW spr round 1 (radius: 5) [17:35:41 -21036.076444] SLOW spr round 2 (radius: 5) [17:36:56 -21033.399747] SLOW spr round 3 (radius: 5) [17:38:09 -21033.398337] SLOW spr round 4 (radius: 10) [17:39:24 -21031.076207] SLOW spr round 5 (radius: 5) [17:40:51 -21028.087756] SLOW spr round 6 (radius: 5) [17:42:10 -21027.818551] SLOW spr round 7 (radius: 5) [17:43:26 -21027.817774] SLOW spr round 8 (radius: 10) [17:44:40 -21027.817687] SLOW spr round 9 (radius: 15) [17:46:17 -20947.421743] SLOW spr round 10 (radius: 5) [17:47:48 -20732.331402] SLOW spr round 11 (radius: 5) [17:49:12 -20661.420763] SLOW spr round 12 (radius: 5) [17:50:32 -20635.828380] SLOW spr round 13 (radius: 5) [17:51:49 -20633.443080] SLOW spr round 14 (radius: 5) [17:53:03 -20633.397335] SLOW spr round 15 (radius: 10) [17:54:21 -20617.501641] SLOW spr round 16 (radius: 5) [17:55:49 -20613.640916] SLOW spr round 17 (radius: 5) [17:57:10 -20613.640161] SLOW spr round 18 (radius: 10) [17:58:26 -20610.374449] SLOW spr round 19 (radius: 5) [17:59:53 -20608.840885] SLOW spr round 20 (radius: 5) [18:01:11 -20608.840513] SLOW spr round 21 (radius: 10) [18:02:26 -20608.840414] SLOW spr round 22 (radius: 15) [18:03:57 -20602.633653] SLOW spr round 23 (radius: 5) [18:05:25 -20602.633613] SLOW spr round 24 (radius: 10) [18:06:44 -20602.477457] SLOW spr round 25 (radius: 5) [18:08:07 -20602.477446] SLOW spr round 26 (radius: 10) [18:09:24 -20602.477437] SLOW spr round 27 (radius: 15) [18:10:52 -20602.477429] SLOW spr round 28 (radius: 20) [18:12:39 -20594.010748] SLOW spr round 29 (radius: 5) [18:14:10 -20583.200561] SLOW spr round 30 (radius: 5) [18:15:32 -20582.303812] SLOW spr round 31 (radius: 5) [18:16:49 -20581.995616] SLOW spr round 32 (radius: 5) [18:18:03 -20581.993080] SLOW spr round 33 (radius: 10) [18:19:17 -20574.542325] SLOW spr round 34 (radius: 5) [18:20:44 -20521.185352] SLOW spr round 35 (radius: 5) [18:22:02 -20521.183864] SLOW spr round 36 (radius: 10) [18:23:18 -20521.183770] SLOW spr round 37 (radius: 15) [18:24:48 -20521.183766] SLOW spr round 38 (radius: 20) [18:26:35 -20466.114242] SLOW spr round 39 (radius: 5) [18:28:06 -20462.275519] SLOW spr round 40 (radius: 5) [18:29:26 -20462.275497] SLOW spr round 41 (radius: 10) [18:30:42 -20462.275497] SLOW spr round 42 (radius: 15) [18:32:12 -20462.275497] SLOW spr round 43 (radius: 20) [18:34:00 -20462.275497] SLOW spr round 44 (radius: 25) [18:36:02 -20458.270876] SLOW spr round 45 (radius: 5) [18:37:33 -20457.795029] SLOW spr round 46 (radius: 5) [18:38:54 -20457.769575] SLOW spr round 47 (radius: 10) [18:40:10 -20456.626702] SLOW spr round 48 (radius: 5) [18:41:34 -20456.626146] SLOW spr round 49 (radius: 10) [18:42:52 -20456.626145] SLOW spr round 50 (radius: 15) [18:44:21 -20456.626144] SLOW spr round 51 (radius: 20) [18:46:09 -20456.626144] SLOW spr round 52 (radius: 25) [18:48:16 -20364.572623] SLOW spr round 53 (radius: 5) [18:49:48 -20297.398121] SLOW spr round 54 (radius: 5) [18:51:13 -20276.390523] SLOW spr round 55 (radius: 5) [18:52:34 -20257.649511] SLOW spr round 56 (radius: 5) [18:53:51 -20254.788888] SLOW spr round 57 (radius: 5) [18:55:05 -20254.788221] SLOW spr round 58 (radius: 10) [18:56:20 -20250.432454] SLOW spr round 59 (radius: 5) [18:57:48 -20250.069821] SLOW spr round 60 (radius: 5) [18:59:08 -20250.069783] SLOW spr round 61 (radius: 10) [19:00:26 -20250.069778] SLOW spr round 62 (radius: 15) [19:02:00 -20237.200075] SLOW spr round 63 (radius: 5) [19:03:32 -20220.309410] SLOW spr round 64 (radius: 5) [19:04:55 -20196.706082] SLOW spr round 65 (radius: 5) [19:06:12 -20196.706082] SLOW spr round 66 (radius: 10) [19:07:28 -20196.706082] SLOW spr round 67 (radius: 15) [19:09:00 -20196.706082] SLOW spr round 68 (radius: 20) [19:10:51 -20189.972613] SLOW spr round 69 (radius: 5) [19:12:23 -20189.971854] SLOW spr round 70 (radius: 10) [19:13:45 -20189.971747] SLOW spr round 71 (radius: 15) [19:15:14 -20189.971728] SLOW spr round 72 (radius: 20) [19:17:03 -20189.829017] SLOW spr round 73 (radius: 5) [19:18:34 -20189.828410] SLOW spr round 74 (radius: 10) [19:19:56 -20189.114870] SLOW spr round 75 (radius: 5) [19:21:21 -20189.111957] SLOW spr round 76 (radius: 10) [19:22:38 -20188.288785] SLOW spr round 77 (radius: 5) [19:24:04 -20188.288777] SLOW spr round 78 (radius: 10) [19:25:23 -20188.288776] SLOW spr round 79 (radius: 15) [19:26:53 -20188.288776] SLOW spr round 80 (radius: 20) [19:28:44 -20188.288776] SLOW spr round 81 (radius: 25) [19:30:47 -20185.669600] SLOW spr round 82 (radius: 5) [19:32:20 -20185.669591] SLOW spr round 83 (radius: 10) [19:33:44 -20185.669591] SLOW spr round 84 (radius: 15) [19:35:15 -20183.731012] SLOW spr round 85 (radius: 5) [19:36:46 -20183.731012] SLOW spr round 86 (radius: 10) [19:38:08 -20183.731012] SLOW spr round 87 (radius: 15) [19:39:38 -20183.731012] SLOW spr round 88 (radius: 20) [19:41:29 -20183.731012] SLOW spr round 89 (radius: 25) [19:43:32 -20183.731012] Model parameter optimization (eps = 0.100000) [19:43:38] ML tree search #12, logLikelihood: -20182.639939 [19:43:38 -77451.144387] Initial branch length optimization [19:43:39 -63473.946863] Model parameter optimization (eps = 10.000000) [19:43:49 -63212.954564] AUTODETECT spr round 1 (radius: 5) [19:45:01 -45337.007001] AUTODETECT spr round 2 (radius: 10) [19:46:21 -35120.825026] AUTODETECT spr round 3 (radius: 15) [19:47:51 -30544.029209] AUTODETECT spr round 4 (radius: 20) [19:49:24 -27922.249060] AUTODETECT spr round 5 (radius: 25) [19:51:07 -25962.873881] SPR radius for FAST iterations: 25 (autodetect) [19:51:07 -25962.873881] Model parameter optimization (eps = 3.000000) [19:51:16 -25907.176346] FAST spr round 1 (radius: 25) [19:52:46 -21212.979914] FAST spr round 2 (radius: 25) [19:53:59 -20681.738357] FAST spr round 3 (radius: 25) [19:55:10 -20631.303597] FAST spr round 4 (radius: 25) [19:56:19 -20620.880403] FAST spr round 5 (radius: 25) [19:57:26 -20619.693703] FAST spr round 6 (radius: 25) [19:58:31 -20619.693660] Model parameter optimization (eps = 1.000000) [19:58:39 -20617.591580] SLOW spr round 1 (radius: 5) [19:59:53 -20610.745658] SLOW spr round 2 (radius: 5) [20:01:06 -20607.501764] SLOW spr round 3 (radius: 5) [20:02:19 -20607.496008] SLOW spr round 4 (radius: 10) [20:03:33 -20604.394484] SLOW spr round 5 (radius: 5) [20:04:57 -20603.017833] SLOW spr round 6 (radius: 5) [20:06:15 -20603.004300] SLOW spr round 7 (radius: 10) [20:07:30 -20602.934009] SLOW spr round 8 (radius: 15) [20:09:06 -20456.998845] SLOW spr round 9 (radius: 5) [20:10:34 -20370.940466] SLOW spr round 10 (radius: 5) [20:11:54 -20368.602776] SLOW spr round 11 (radius: 5) [20:13:09 -20368.600632] SLOW spr round 12 (radius: 10) [20:14:23 -20365.690661] SLOW spr round 13 (radius: 5) [20:15:48 -20360.975855] SLOW spr round 14 (radius: 5) [20:17:06 -20360.126943] SLOW spr round 15 (radius: 5) [20:18:21 -20360.126638] SLOW spr round 16 (radius: 10) [20:19:35 -20360.126560] SLOW spr round 17 (radius: 15) [20:21:06 -20360.101048] SLOW spr round 18 (radius: 20) [20:22:52 -20308.632692] SLOW spr round 19 (radius: 5) [20:24:21 -20153.730256] SLOW spr round 20 (radius: 5) [20:25:43 -20143.308871] SLOW spr round 21 (radius: 5) [20:27:00 -20140.935996] SLOW spr round 22 (radius: 5) [20:28:13 -20140.921169] SLOW spr round 23 (radius: 10) [20:29:27 -20140.917491] SLOW spr round 24 (radius: 15) [20:30:57 -20140.652741] SLOW spr round 25 (radius: 5) [20:32:22 -20140.651963] SLOW spr round 26 (radius: 10) [20:33:41 -20140.651935] SLOW spr round 27 (radius: 15) [20:35:09 -20140.651932] SLOW spr round 28 (radius: 20) [20:36:52 -20140.651931] SLOW spr round 29 (radius: 25) [20:38:52 -19936.350945] SLOW spr round 30 (radius: 5) [20:40:23 -19814.140132] SLOW spr round 31 (radius: 5) [20:41:45 -19786.243167] SLOW spr round 32 (radius: 5) [20:43:04 -19728.218162] SLOW spr round 33 (radius: 5) [20:44:18 -19718.254549] SLOW spr round 34 (radius: 5) [20:45:31 -19718.254496] SLOW spr round 35 (radius: 10) [20:46:44 -19667.593675] SLOW spr round 36 (radius: 5) [20:48:08 -19667.592896] SLOW spr round 37 (radius: 10) [20:49:25 -19666.071298] SLOW spr round 38 (radius: 5) [20:50:47 -19666.070521] SLOW spr round 39 (radius: 10) [20:52:04 -19666.070508] SLOW spr round 40 (radius: 15) [20:53:32 -19666.070508] SLOW spr round 41 (radius: 20) [20:55:16 -19664.606139] SLOW spr round 42 (radius: 5) [20:56:43 -19653.823788] SLOW spr round 43 (radius: 5) [20:58:04 -19653.404964] SLOW spr round 44 (radius: 5) [20:59:19 -19653.404613] SLOW spr round 45 (radius: 10) [21:00:33 -19653.404488] SLOW spr round 46 (radius: 15) [21:02:02 -19653.404487] SLOW spr round 47 (radius: 20) [21:03:45 -19653.404487] SLOW spr round 48 (radius: 25) [21:05:39 -19651.050845] SLOW spr round 49 (radius: 5) [21:07:06 -19651.050781] SLOW spr round 50 (radius: 10) [21:08:26 -19651.050766] SLOW spr round 51 (radius: 15) [21:09:54 -19651.050762] SLOW spr round 52 (radius: 20) [21:11:37 -19651.050761] SLOW spr round 53 (radius: 25) [21:13:31 -19649.221117] SLOW spr round 54 (radius: 5) [21:15:00 -19634.745856] SLOW spr round 55 (radius: 5) [21:16:23 -19525.151163] SLOW spr round 56 (radius: 5) [21:17:42 -19448.003052] SLOW spr round 57 (radius: 5) [21:18:57 -19444.958410] SLOW spr round 58 (radius: 5) [21:20:11 -19441.685902] SLOW spr round 59 (radius: 5) [21:21:25 -19406.267835] SLOW spr round 60 (radius: 5) [21:22:39 -19405.660899] SLOW spr round 61 (radius: 5) [21:23:57 -19396.973541] SLOW spr round 62 (radius: 5) [21:25:08 -19396.972264] SLOW spr round 63 (radius: 10) [21:26:21 -19396.972093] SLOW spr round 64 (radius: 15) [21:27:52 -19396.128965] SLOW spr round 65 (radius: 5) [21:29:17 -19396.128525] SLOW spr round 66 (radius: 10) [21:30:35 -19396.128351] SLOW spr round 67 (radius: 15) [21:32:03 -19396.128351] SLOW spr round 68 (radius: 20) [21:33:52 -19396.128350] SLOW spr round 69 (radius: 25) [21:35:56 -19391.753268] SLOW spr round 70 (radius: 5) [21:37:25 -19370.885367] SLOW spr round 71 (radius: 5) [21:38:46 -19366.119931] SLOW spr round 72 (radius: 5) [21:40:01 -19366.119757] SLOW spr round 73 (radius: 10) [21:41:15 -19366.119746] SLOW spr round 74 (radius: 15) [21:42:44 -19366.119746] SLOW spr round 75 (radius: 20) [21:44:31 -19366.119746] SLOW spr round 76 (radius: 25) [21:46:34 -19366.119746] Model parameter optimization (eps = 0.100000) [21:46:41] ML tree search #13, logLikelihood: -19364.991543 [21:46:41 -76590.758809] Initial branch length optimization [21:46:43 -63247.458262] Model parameter optimization (eps = 10.000000) [21:46:57 -62941.403585] AUTODETECT spr round 1 (radius: 5) [21:48:09 -45918.561728] AUTODETECT spr round 2 (radius: 10) [21:49:28 -35418.942267] AUTODETECT spr round 3 (radius: 15) [21:50:59 -29444.858493] AUTODETECT spr round 4 (radius: 20) [21:52:31 -27378.379062] AUTODETECT spr round 5 (radius: 25) [21:54:04 -26572.609435] SPR radius for FAST iterations: 25 (autodetect) [21:54:04 -26572.609435] Model parameter optimization (eps = 3.000000) [21:54:20 -26536.324092] FAST spr round 1 (radius: 25) [21:55:43 -22016.660581] FAST spr round 2 (radius: 25) [21:56:56 -21231.847182] FAST spr round 3 (radius: 25) [21:58:04 -20628.959734] FAST spr round 4 (radius: 25) [21:59:11 -20411.654089] FAST spr round 5 (radius: 25) [22:00:17 -20368.388000] FAST spr round 6 (radius: 25) [22:01:24 -20360.973503] FAST spr round 7 (radius: 25) [22:02:28 -20360.776049] FAST spr round 8 (radius: 25) [22:03:32 -20360.729225] Model parameter optimization (eps = 1.000000) [22:03:45 -20355.319822] SLOW spr round 1 (radius: 5) [22:04:58 -20343.657668] SLOW spr round 2 (radius: 5) [22:06:11 -20341.143977] SLOW spr round 3 (radius: 5) [22:07:22 -20341.128716] SLOW spr round 4 (radius: 10) [22:08:35 -20339.359820] SLOW spr round 5 (radius: 5) [22:10:01 -20335.686956] SLOW spr round 6 (radius: 5) [22:11:19 -20335.506804] SLOW spr round 7 (radius: 5) [22:12:33 -20335.505899] SLOW spr round 8 (radius: 10) [22:13:47 -20334.772989] SLOW spr round 9 (radius: 5) [22:15:09 -20334.772963] SLOW spr round 10 (radius: 10) [22:16:27 -20330.528914] SLOW spr round 11 (radius: 5) [22:17:51 -20328.020116] SLOW spr round 12 (radius: 5) [22:19:08 -20328.019899] SLOW spr round 13 (radius: 10) [22:20:23 -20328.019890] SLOW spr round 14 (radius: 15) [22:21:55 -20324.240762] SLOW spr round 15 (radius: 5) [22:23:22 -20322.741068] SLOW spr round 16 (radius: 5) [22:24:41 -20322.530157] SLOW spr round 17 (radius: 5) [22:25:56 -20322.528810] SLOW spr round 18 (radius: 10) [22:27:09 -20317.105221] SLOW spr round 19 (radius: 5) [22:28:32 -20315.920967] SLOW spr round 20 (radius: 5) [22:29:50 -20315.851826] SLOW spr round 21 (radius: 10) [22:31:04 -20315.850585] SLOW spr round 22 (radius: 15) [22:32:36 -20314.896343] SLOW spr round 23 (radius: 5) [22:34:02 -20313.002380] SLOW spr round 24 (radius: 5) [22:35:21 -20313.002377] SLOW spr round 25 (radius: 10) [22:36:36 -20313.002376] SLOW spr round 26 (radius: 15) [22:38:09 -20313.002376] SLOW spr round 27 (radius: 20) [22:40:04 -20197.401494] SLOW spr round 28 (radius: 5) [22:41:36 -20146.157733] SLOW spr round 29 (radius: 5) [22:42:59 -20140.899118] SLOW spr round 30 (radius: 5) [22:44:17 -20140.090195] SLOW spr round 31 (radius: 5) [22:45:30 -20140.089978] SLOW spr round 32 (radius: 10) [22:46:44 -20140.089958] SLOW spr round 33 (radius: 15) [22:48:18 -20140.089955] SLOW spr round 34 (radius: 20) [22:50:07 -20140.089955] SLOW spr round 35 (radius: 25) [22:52:22 -19835.556737] SLOW spr round 36 (radius: 5) [22:53:54 -19587.632370] SLOW spr round 37 (radius: 5) [22:55:19 -19435.906168] SLOW spr round 38 (radius: 5) [22:56:38 -19390.582311] SLOW spr round 39 (radius: 5) [22:57:54 -19365.400795] SLOW spr round 40 (radius: 5) [22:59:08 -19364.546186] SLOW spr round 41 (radius: 5) [23:00:19 -19364.545998] SLOW spr round 42 (radius: 10) [23:01:32 -19360.085361] SLOW spr round 43 (radius: 5) [23:02:56 -19358.324167] SLOW spr round 44 (radius: 5) [23:04:14 -19358.322542] SLOW spr round 45 (radius: 10) [23:05:28 -19358.322474] SLOW spr round 46 (radius: 15) [23:07:01 -19336.468589] SLOW spr round 47 (radius: 5) [23:08:27 -19335.863735] SLOW spr round 48 (radius: 5) [23:09:45 -19335.863404] SLOW spr round 49 (radius: 10) [23:11:00 -19335.863393] SLOW spr round 50 (radius: 15) [23:12:31 -19335.863392] SLOW spr round 51 (radius: 20) [23:14:21 -19334.056240] SLOW spr round 52 (radius: 5) [23:15:50 -19333.009344] SLOW spr round 53 (radius: 5) [23:17:08 -19333.009294] SLOW spr round 54 (radius: 10) [23:18:25 -19333.009294] SLOW spr round 55 (radius: 15) [23:19:59 -19333.009294] SLOW spr round 56 (radius: 20) [23:21:50 -19333.009294] SLOW spr round 57 (radius: 25) [23:24:01 -19333.009294] Model parameter optimization (eps = 0.100000) [23:24:07] ML tree search #14, logLikelihood: -19332.252663 [23:24:07 -76599.074553] Initial branch length optimization [23:24:09 -62776.932501] Model parameter optimization (eps = 10.000000) [23:24:23 -62531.253200] AUTODETECT spr round 1 (radius: 5) [23:25:37 -45627.721679] AUTODETECT spr round 2 (radius: 10) [23:26:59 -35852.466113] AUTODETECT spr round 3 (radius: 15) [23:28:32 -31169.120679] AUTODETECT spr round 4 (radius: 20) [23:30:00 -26648.532350] AUTODETECT spr round 5 (radius: 25) [23:31:32 -25509.611683] SPR radius for FAST iterations: 25 (autodetect) [23:31:32 -25509.611683] Model parameter optimization (eps = 3.000000) [23:31:40 -25443.850389] FAST spr round 1 (radius: 25) [23:33:01 -21635.583419] FAST spr round 2 (radius: 25) [23:34:15 -20678.748824] FAST spr round 3 (radius: 25) [23:35:25 -20363.143124] FAST spr round 4 (radius: 25) [23:36:35 -20130.652289] FAST spr round 5 (radius: 25) [23:37:45 -19947.368516] FAST spr round 6 (radius: 25) [23:38:51 -19931.425315] FAST spr round 7 (radius: 25) [23:39:56 -19928.491311] FAST spr round 8 (radius: 25) [23:41:00 -19928.490943] Model parameter optimization (eps = 1.000000) [23:41:07 -19924.799460] SLOW spr round 1 (radius: 5) [23:42:21 -19920.217749] SLOW spr round 2 (radius: 5) [23:43:36 -19918.275937] SLOW spr round 3 (radius: 5) [23:44:50 -19917.139540] SLOW spr round 4 (radius: 5) [23:46:03 -19917.136608] SLOW spr round 5 (radius: 10) [23:47:17 -19906.261010] SLOW spr round 6 (radius: 5) [23:48:41 -19905.156394] SLOW spr round 7 (radius: 5) [23:50:00 -19905.156083] SLOW spr round 8 (radius: 10) [23:51:17 -19904.439827] SLOW spr round 9 (radius: 5) [23:52:41 -19904.421960] SLOW spr round 10 (radius: 10) [23:53:59 -19904.378432] SLOW spr round 11 (radius: 15) [23:55:28 -19903.319312] SLOW spr round 12 (radius: 5) [23:56:54 -19903.319275] SLOW spr round 13 (radius: 10) [23:58:13 -19902.116205] SLOW spr round 14 (radius: 5) [23:59:36 -19847.730246] SLOW spr round 15 (radius: 5) [24:00:53 -19843.208293] SLOW spr round 16 (radius: 5) [24:02:08 -19841.991037] SLOW spr round 17 (radius: 5) [24:03:20 -19841.989728] SLOW spr round 18 (radius: 10) [24:04:32 -19841.697459] SLOW spr round 19 (radius: 5) [24:05:53 -19841.697405] SLOW spr round 20 (radius: 10) [24:07:10 -19841.697405] SLOW spr round 21 (radius: 15) [24:08:36 -19841.697404] SLOW spr round 22 (radius: 20) [24:10:18 -19841.697404] SLOW spr round 23 (radius: 25) [24:12:10 -19826.262950] SLOW spr round 24 (radius: 5) [24:13:39 -19803.871655] SLOW spr round 25 (radius: 5) [24:15:00 -19803.266557] SLOW spr round 26 (radius: 5) [24:16:17 -19802.896800] SLOW spr round 27 (radius: 5) [24:17:30 -19802.896205] SLOW spr round 28 (radius: 10) [24:18:43 -19802.896170] SLOW spr round 29 (radius: 15) [24:20:10 -19802.896166] SLOW spr round 30 (radius: 20) [24:21:51 -19802.896166] SLOW spr round 31 (radius: 25) [24:23:41 -19799.782012] SLOW spr round 32 (radius: 5) [24:25:09 -19799.537119] SLOW spr round 33 (radius: 5) [24:26:28 -19799.537056] SLOW spr round 34 (radius: 10) [24:27:43 -19799.537052] SLOW spr round 35 (radius: 15) [24:29:09 -19799.537052] SLOW spr round 36 (radius: 20) [24:30:52 -19782.425395] SLOW spr round 37 (radius: 5) [24:32:21 -19749.612320] SLOW spr round 38 (radius: 5) [24:33:40 -19749.298973] SLOW spr round 39 (radius: 5) [24:34:55 -19749.298596] SLOW spr round 40 (radius: 10) [24:36:08 -19749.298590] SLOW spr round 41 (radius: 15) [24:37:35 -19749.298590] SLOW spr round 42 (radius: 20) [24:39:17 -19747.875301] SLOW spr round 43 (radius: 5) [24:40:44 -19747.875010] SLOW spr round 44 (radius: 10) [24:42:03 -19747.875009] SLOW spr round 45 (radius: 15) [24:43:29 -19747.875009] SLOW spr round 46 (radius: 20) [24:45:12 -19747.875009] SLOW spr round 47 (radius: 25) [24:47:02 -19747.875009] Model parameter optimization (eps = 0.100000) [24:47:04] ML tree search #15, logLikelihood: -19747.790431 [24:47:04 -76578.164674] Initial branch length optimization [24:47:06 -63199.175462] Model parameter optimization (eps = 10.000000) [24:47:16 -62932.515126] AUTODETECT spr round 1 (radius: 5) [24:48:28 -43752.286545] AUTODETECT spr round 2 (radius: 10) [24:49:46 -33977.411347] AUTODETECT spr round 3 (radius: 15) [24:51:14 -29532.937042] AUTODETECT spr round 4 (radius: 20) [24:52:45 -27043.642776] AUTODETECT spr round 5 (radius: 25) [24:54:31 -24911.311504] SPR radius for FAST iterations: 25 (autodetect) [24:54:31 -24911.311504] Model parameter optimization (eps = 3.000000) [24:54:45 -24888.565985] FAST spr round 1 (radius: 25) [24:56:15 -20571.143429] FAST spr round 2 (radius: 25) [24:57:30 -20190.358082] FAST spr round 3 (radius: 25) [24:58:38 -20128.855606] FAST spr round 4 (radius: 25) [24:59:45 -20123.138712] FAST spr round 5 (radius: 25) [25:00:51 -20121.059405] FAST spr round 6 (radius: 25) [25:01:56 -20120.635497] FAST spr round 7 (radius: 25) [25:03:00 -20120.634571] Model parameter optimization (eps = 1.000000) [25:03:08 -20106.651970] SLOW spr round 1 (radius: 5) [25:04:20 -20095.717260] SLOW spr round 2 (radius: 5) [25:05:34 -20091.717021] SLOW spr round 3 (radius: 5) [25:06:47 -20091.017840] SLOW spr round 4 (radius: 5) [25:08:00 -20091.017645] SLOW spr round 5 (radius: 10) [25:09:16 -20086.867975] SLOW spr round 6 (radius: 5) [25:10:41 -20085.564779] SLOW spr round 7 (radius: 5) [25:11:59 -20085.241112] SLOW spr round 8 (radius: 5) [25:13:12 -20085.240769] SLOW spr round 9 (radius: 10) [25:14:27 -20085.063726] SLOW spr round 10 (radius: 5) [25:15:50 -20085.063306] SLOW spr round 11 (radius: 10) [25:17:08 -20085.063260] SLOW spr round 12 (radius: 15) [25:18:37 -20084.622608] SLOW spr round 13 (radius: 5) [25:20:03 -20084.622595] SLOW spr round 14 (radius: 10) [25:21:23 -20084.622584] SLOW spr round 15 (radius: 15) [25:22:51 -20084.622571] SLOW spr round 16 (radius: 20) [25:24:40 -20076.484731] SLOW spr round 17 (radius: 5) [25:26:09 -20017.702630] SLOW spr round 18 (radius: 5) [25:27:30 -20013.095081] SLOW spr round 19 (radius: 5) [25:28:47 -20013.094011] SLOW spr round 20 (radius: 10) [25:30:01 -20013.093228] SLOW spr round 21 (radius: 15) [25:31:31 -20013.092625] SLOW spr round 22 (radius: 20) [25:33:18 -20013.092152] SLOW spr round 23 (radius: 25) [25:35:20 -20012.077154] SLOW spr round 24 (radius: 5) [25:36:48 -20012.075814] SLOW spr round 25 (radius: 10) [25:38:10 -20012.075541] SLOW spr round 26 (radius: 15) [25:39:38 -20012.075390] SLOW spr round 27 (radius: 20) [25:41:26 -20012.075277] SLOW spr round 28 (radius: 25) [25:43:28 -20012.075189] Model parameter optimization (eps = 0.100000) [25:43:34] ML tree search #16, logLikelihood: -20011.898165 [25:43:34 -76891.097011] Initial branch length optimization [25:43:35 -63576.029478] Model parameter optimization (eps = 10.000000) [25:43:54 -63214.954587] AUTODETECT spr round 1 (radius: 5) [25:45:05 -44250.109746] AUTODETECT spr round 2 (radius: 10) [25:46:23 -34380.084566] AUTODETECT spr round 3 (radius: 15) [25:47:50 -28332.301416] AUTODETECT spr round 4 (radius: 20) [25:49:21 -26395.064991] AUTODETECT spr round 5 (radius: 25) [25:50:56 -24443.591859] SPR radius for FAST iterations: 25 (autodetect) [25:50:56 -24443.591859] Model parameter optimization (eps = 3.000000) [25:51:08 -24417.439499] FAST spr round 1 (radius: 25) [25:52:39 -20941.493853] FAST spr round 2 (radius: 25) [25:53:53 -20061.360903] FAST spr round 3 (radius: 25) [25:55:04 -19902.017424] FAST spr round 4 (radius: 25) [25:56:13 -19895.279821] FAST spr round 5 (radius: 25) [25:57:21 -19895.279299] Model parameter optimization (eps = 1.000000) [25:57:26 -19895.129869] SLOW spr round 1 (radius: 5) [25:58:44 -19890.695128] SLOW spr round 2 (radius: 5) [26:00:01 -19889.612758] SLOW spr round 3 (radius: 5) [26:01:17 -19889.585175] SLOW spr round 4 (radius: 10) [26:02:36 -19889.354637] SLOW spr round 5 (radius: 5) [26:04:06 -19888.884930] SLOW spr round 6 (radius: 5) [26:05:28 -19888.883933] SLOW spr round 7 (radius: 10) [26:06:46 -19888.657090] SLOW spr round 8 (radius: 5) [26:08:13 -19888.656466] SLOW spr round 9 (radius: 10) [26:09:34 -19888.394345] SLOW spr round 10 (radius: 5) [26:11:00 -19888.394312] SLOW spr round 11 (radius: 10) [26:12:21 -19888.394295] SLOW spr round 12 (radius: 15) [26:13:54 -19874.990461] SLOW spr round 13 (radius: 5) [26:15:29 -19857.635943] SLOW spr round 14 (radius: 5) [26:16:55 -19844.341970] SLOW spr round 15 (radius: 5) [26:18:15 -19844.334705] SLOW spr round 16 (radius: 10) [26:19:33 -19843.449820] SLOW spr round 17 (radius: 5) [26:21:04 -19836.847134] SLOW spr round 18 (radius: 5) [26:22:27 -19836.845793] SLOW spr round 19 (radius: 10) [26:23:45 -19836.845753] SLOW spr round 20 (radius: 15) [26:25:17 -19836.845751] SLOW spr round 21 (radius: 20) [26:27:03 -19836.415284] SLOW spr round 22 (radius: 5) [26:28:36 -19836.415282] SLOW spr round 23 (radius: 10) [26:30:01 -19836.415282] SLOW spr round 24 (radius: 15) [26:31:32 -19836.415281] SLOW spr round 25 (radius: 20) [26:33:19 -19836.415280] SLOW spr round 26 (radius: 25) [26:35:14 -19829.530180] SLOW spr round 27 (radius: 5) [26:36:53 -19825.163542] SLOW spr round 28 (radius: 5) [26:38:25 -19752.323046] SLOW spr round 29 (radius: 5) [26:39:50 -19750.530250] SLOW spr round 30 (radius: 5) [26:41:11 -19748.688392] SLOW spr round 31 (radius: 5) [26:42:29 -19748.688147] SLOW spr round 32 (radius: 10) [26:43:46 -19748.688144] SLOW spr round 33 (radius: 15) [26:45:28 -19748.599166] SLOW spr round 34 (radius: 20) [26:47:31 -19748.598287] SLOW spr round 35 (radius: 25) [26:49:45 -19747.855675] SLOW spr round 36 (radius: 5) [26:51:25 -19747.232944] SLOW spr round 37 (radius: 5) [26:52:53 -19747.232925] SLOW spr round 38 (radius: 10) [26:54:17 -19747.232902] SLOW spr round 39 (radius: 15) [26:55:58 -19740.027713] SLOW spr round 40 (radius: 5) [26:57:39 -19723.107203] SLOW spr round 41 (radius: 5) [26:59:12 -19692.638339] SLOW spr round 42 (radius: 5) [27:00:38 -19678.471446] SLOW spr round 43 (radius: 5) [27:01:59 -19678.471415] SLOW spr round 44 (radius: 10) [27:03:21 -19678.471411] SLOW spr round 45 (radius: 15) [27:05:09 -19676.877882] SLOW spr round 46 (radius: 5) [27:06:51 -19676.875043] SLOW spr round 47 (radius: 10) [27:08:24 -19676.874879] SLOW spr round 48 (radius: 15) [27:10:09 -19676.874860] SLOW spr round 49 (radius: 20) [27:12:22 -19675.497423] SLOW spr round 50 (radius: 5) [27:14:07 -19675.048918] SLOW spr round 51 (radius: 5) [27:15:38 -19675.048752] SLOW spr round 52 (radius: 10) [27:17:03 -19675.048737] SLOW spr round 53 (radius: 15) [27:18:46 -19675.048736] SLOW spr round 54 (radius: 20) [27:20:58 -19675.048735] SLOW spr round 55 (radius: 25) [27:23:24 -19675.048735] Model parameter optimization (eps = 0.100000) [27:23:29] ML tree search #17, logLikelihood: -19674.996449 [27:23:29 -76105.688167] Initial branch length optimization [27:23:30 -62562.768302] Model parameter optimization (eps = 10.000000) [27:23:43 -62297.191158] AUTODETECT spr round 1 (radius: 5) [27:24:55 -45475.808100] AUTODETECT spr round 2 (radius: 10) [27:26:15 -35014.053170] AUTODETECT spr round 3 (radius: 15) [27:27:43 -29113.135677] AUTODETECT spr round 4 (radius: 20) [27:29:25 -25707.392563] AUTODETECT spr round 5 (radius: 25) [27:31:15 -23893.314154] SPR radius for FAST iterations: 25 (autodetect) [27:31:15 -23893.314154] Model parameter optimization (eps = 3.000000) [27:31:29 -23870.233384] FAST spr round 1 (radius: 25) [27:32:58 -20799.346044] FAST spr round 2 (radius: 25) [27:34:14 -20412.031587] FAST spr round 3 (radius: 25) [27:35:28 -20171.176597] FAST spr round 4 (radius: 25) [27:36:37 -20144.622871] FAST spr round 5 (radius: 25) [27:37:45 -20144.621177] Model parameter optimization (eps = 1.000000) [27:37:54 -20142.425515] SLOW spr round 1 (radius: 5) [27:39:11 -20134.021072] SLOW spr round 2 (radius: 5) [27:40:25 -20133.228575] SLOW spr round 3 (radius: 5) [27:41:39 -20132.063683] SLOW spr round 4 (radius: 5) [27:42:52 -20132.063472] SLOW spr round 5 (radius: 10) [27:44:06 -20131.906605] SLOW spr round 6 (radius: 5) [27:45:32 -20131.414903] SLOW spr round 7 (radius: 5) [27:46:52 -20131.414886] SLOW spr round 8 (radius: 10) [27:48:08 -20131.414880] SLOW spr round 9 (radius: 15) [27:49:42 -20120.521116] SLOW spr round 10 (radius: 5) [27:51:08 -20119.678784] SLOW spr round 11 (radius: 5) [27:52:27 -20119.676277] SLOW spr round 12 (radius: 10) [27:53:42 -20119.676042] SLOW spr round 13 (radius: 15) [27:55:12 -20119.676008] SLOW spr round 14 (radius: 20) [27:57:01 -20118.844904] SLOW spr round 15 (radius: 5) [27:58:28 -20118.836459] SLOW spr round 16 (radius: 10) [27:59:49 -20118.595046] SLOW spr round 17 (radius: 5) [28:01:11 -20118.594732] SLOW spr round 18 (radius: 10) [28:02:28 -20118.594726] SLOW spr round 19 (radius: 15) [28:03:58 -20118.594725] SLOW spr round 20 (radius: 20) [28:05:47 -20118.299222] SLOW spr round 21 (radius: 5) [28:07:14 -20118.299215] SLOW spr round 22 (radius: 10) [28:08:35 -20118.299214] SLOW spr round 23 (radius: 15) [28:10:04 -20118.299214] SLOW spr round 24 (radius: 20) [28:11:53 -20118.299213] SLOW spr round 25 (radius: 25) [28:14:01 -20072.475182] SLOW spr round 26 (radius: 5) [28:15:32 -19934.450486] SLOW spr round 27 (radius: 5) [28:16:55 -19916.184129] SLOW spr round 28 (radius: 5) [28:18:12 -19916.174308] SLOW spr round 29 (radius: 10) [28:19:26 -19915.669276] SLOW spr round 30 (radius: 5) [28:20:49 -19915.633726] SLOW spr round 31 (radius: 10) [28:22:06 -19915.633020] SLOW spr round 32 (radius: 15) [28:23:35 -19915.497776] SLOW spr round 33 (radius: 5) [28:25:01 -19914.550402] SLOW spr round 34 (radius: 5) [28:26:20 -19914.549067] SLOW spr round 35 (radius: 10) [28:27:36 -19914.548898] SLOW spr round 36 (radius: 15) [28:29:05 -19914.548875] SLOW spr round 37 (radius: 20) [28:30:52 -19914.548872] SLOW spr round 38 (radius: 25) [28:32:52 -19912.554284] SLOW spr round 39 (radius: 5) [28:34:21 -19912.238684] SLOW spr round 40 (radius: 5) [28:35:40 -19912.238666] SLOW spr round 41 (radius: 10) [28:36:56 -19909.919265] SLOW spr round 42 (radius: 5) [28:38:21 -19908.733117] SLOW spr round 43 (radius: 5) [28:39:38 -19908.326586] SLOW spr round 44 (radius: 5) [28:40:52 -19908.326274] SLOW spr round 45 (radius: 10) [28:42:05 -19908.326006] SLOW spr round 46 (radius: 15) [28:43:35 -19908.325776] SLOW spr round 47 (radius: 20) [28:45:21 -19908.325578] SLOW spr round 48 (radius: 25) [28:47:21 -19908.325407] Model parameter optimization (eps = 0.100000) [28:47:24] ML tree search #18, logLikelihood: -19908.258524 [28:47:24 -76949.753821] Initial branch length optimization [28:47:26 -63557.185462] Model parameter optimization (eps = 10.000000) [28:47:40 -63310.159081] AUTODETECT spr round 1 (radius: 5) [28:48:50 -45136.640986] AUTODETECT spr round 2 (radius: 10) [28:50:09 -33717.045313] AUTODETECT spr round 3 (radius: 15) [28:51:35 -28834.920589] AUTODETECT spr round 4 (radius: 20) [28:53:07 -27296.829880] AUTODETECT spr round 5 (radius: 25) [28:54:43 -25663.121320] SPR radius for FAST iterations: 25 (autodetect) [28:54:43 -25663.121320] Model parameter optimization (eps = 3.000000) [28:54:57 -25627.905491] FAST spr round 1 (radius: 25) [28:56:20 -21595.014466] FAST spr round 2 (radius: 25) [28:57:32 -20959.919321] FAST spr round 3 (radius: 25) [28:58:41 -20810.200735] FAST spr round 4 (radius: 25) [28:59:49 -20682.342031] FAST spr round 5 (radius: 25) [29:00:55 -20480.371636] FAST spr round 6 (radius: 25) [29:02:02 -20440.505775] FAST spr round 7 (radius: 25) [29:03:07 -20431.576121] FAST spr round 8 (radius: 25) [29:04:12 -20431.576070] Model parameter optimization (eps = 1.000000) [29:04:20 -20420.972593] SLOW spr round 1 (radius: 5) [29:05:33 -20412.561587] SLOW spr round 2 (radius: 5) [29:06:46 -20410.326887] SLOW spr round 3 (radius: 5) [29:07:59 -20409.931064] SLOW spr round 4 (radius: 5) [29:09:11 -20409.930731] SLOW spr round 5 (radius: 10) [29:10:25 -20407.172033] SLOW spr round 6 (radius: 5) [29:11:50 -20404.688828] SLOW spr round 7 (radius: 5) [29:13:09 -20399.313043] SLOW spr round 8 (radius: 5) [29:14:24 -20399.259195] SLOW spr round 9 (radius: 10) [29:15:38 -20398.937779] SLOW spr round 10 (radius: 5) [29:17:01 -20398.937768] SLOW spr round 11 (radius: 10) [29:18:20 -20398.128748] SLOW spr round 12 (radius: 5) [29:19:42 -20398.128740] SLOW spr round 13 (radius: 10) [29:20:59 -20398.128733] SLOW spr round 14 (radius: 15) [29:22:30 -20397.951703] SLOW spr round 15 (radius: 5) [29:23:57 -20397.951690] SLOW spr round 16 (radius: 10) [29:25:15 -20397.534600] SLOW spr round 17 (radius: 5) [29:26:37 -20397.534598] SLOW spr round 18 (radius: 10) [29:27:53 -20397.534598] SLOW spr round 19 (radius: 15) [29:29:24 -20397.534597] SLOW spr round 20 (radius: 20) [29:31:16 -20314.198976] SLOW spr round 21 (radius: 5) [29:32:46 -20291.588530] SLOW spr round 22 (radius: 5) [29:34:07 -20285.756684] SLOW spr round 23 (radius: 5) [29:35:22 -20283.542533] SLOW spr round 24 (radius: 5) [29:36:35 -20283.540625] SLOW spr round 25 (radius: 10) [29:37:48 -20283.540388] SLOW spr round 26 (radius: 15) [29:39:20 -20282.285693] SLOW spr round 27 (radius: 5) [29:40:45 -20282.285504] SLOW spr round 28 (radius: 10) [29:42:03 -20281.961823] SLOW spr round 29 (radius: 5) [29:43:25 -20281.961749] SLOW spr round 30 (radius: 10) [29:44:41 -20281.599573] SLOW spr round 31 (radius: 5) [29:46:04 -20281.411509] SLOW spr round 32 (radius: 5) [29:47:20 -20281.395210] SLOW spr round 33 (radius: 10) [29:48:34 -20281.395193] SLOW spr round 34 (radius: 15) [29:50:05 -20281.395192] SLOW spr round 35 (radius: 20) [29:51:54 -20274.148504] SLOW spr round 36 (radius: 5) [29:53:23 -20272.784349] SLOW spr round 37 (radius: 5) [29:54:43 -20272.200418] SLOW spr round 38 (radius: 5) [29:55:58 -20271.721811] SLOW spr round 39 (radius: 5) [29:57:10 -20271.721699] SLOW spr round 40 (radius: 10) [29:58:22 -20271.721696] SLOW spr round 41 (radius: 15) [29:59:55 -20271.721696] SLOW spr round 42 (radius: 20) [30:01:42 -20271.721696] SLOW spr round 43 (radius: 25) [30:03:43 -20257.108038] SLOW spr round 44 (radius: 5) [30:05:12 -20252.818820] SLOW spr round 45 (radius: 5) [30:06:32 -20250.487992] SLOW spr round 46 (radius: 5) [30:07:47 -20250.448486] SLOW spr round 47 (radius: 10) [30:08:59 -20250.448427] SLOW spr round 48 (radius: 15) [30:10:30 -20250.448419] SLOW spr round 49 (radius: 20) [30:12:15 -20250.448417] SLOW spr round 50 (radius: 25) [30:14:11 -20249.743276] SLOW spr round 51 (radius: 5) [30:15:37 -20249.742817] SLOW spr round 52 (radius: 10) [30:16:56 -20249.742785] SLOW spr round 53 (radius: 15) [30:18:24 -20249.742782] SLOW spr round 54 (radius: 20) [30:20:10 -20249.742781] SLOW spr round 55 (radius: 25) [30:22:07 -20249.742781] Model parameter optimization (eps = 0.100000) [30:22:12] ML tree search #19, logLikelihood: -20249.290738 [30:22:12 -76562.571723] Initial branch length optimization [30:22:13 -63563.605722] Model parameter optimization (eps = 10.000000) [30:22:24 -63269.441015] AUTODETECT spr round 1 (radius: 5) [30:23:35 -45749.196383] AUTODETECT spr round 2 (radius: 10) [30:24:54 -35449.381089] AUTODETECT spr round 3 (radius: 15) [30:26:25 -31199.496449] AUTODETECT spr round 4 (radius: 20) [30:28:03 -27505.022361] AUTODETECT spr round 5 (radius: 25) [30:29:47 -24920.552306] SPR radius for FAST iterations: 25 (autodetect) [30:29:47 -24920.552306] Model parameter optimization (eps = 3.000000) [30:29:57 -24861.019392] FAST spr round 1 (radius: 25) [30:31:24 -20362.740493] FAST spr round 2 (radius: 25) [30:32:37 -20059.633235] FAST spr round 3 (radius: 25) [30:33:46 -20023.589637] FAST spr round 4 (radius: 25) [30:34:52 -20013.726744] FAST spr round 5 (radius: 25) [30:35:56 -20013.342795] FAST spr round 6 (radius: 25) [30:37:00 -20013.342336] Model parameter optimization (eps = 1.000000) [30:37:07 -20008.873559] SLOW spr round 1 (radius: 5) [30:38:23 -20004.847417] SLOW spr round 2 (radius: 5) [30:39:36 -20004.493158] SLOW spr round 3 (radius: 5) [30:40:48 -20004.492937] SLOW spr round 4 (radius: 10) [30:42:02 -20001.805071] SLOW spr round 5 (radius: 5) [30:43:27 -20000.832940] SLOW spr round 6 (radius: 5) [30:44:45 -20000.832055] SLOW spr round 7 (radius: 10) [30:45:59 -20000.831935] SLOW spr round 8 (radius: 15) [30:47:27 -20000.099112] SLOW spr round 9 (radius: 5) [30:48:53 -20000.097854] SLOW spr round 10 (radius: 10) [30:50:12 -19999.542381] SLOW spr round 11 (radius: 5) [30:51:34 -19999.542274] SLOW spr round 12 (radius: 10) [30:52:50 -19999.542230] SLOW spr round 13 (radius: 15) [30:54:17 -19999.528267] SLOW spr round 14 (radius: 20) [30:56:03 -19984.783919] SLOW spr round 15 (radius: 5) [30:57:32 -19964.388643] SLOW spr round 16 (radius: 5) [30:58:54 -19962.481719] SLOW spr round 17 (radius: 5) [31:00:11 -19962.481678] SLOW spr round 18 (radius: 10) [31:01:27 -19960.195112] SLOW spr round 19 (radius: 5) [31:02:52 -19960.195024] SLOW spr round 20 (radius: 10) [31:04:10 -19960.194997] SLOW spr round 21 (radius: 15) [31:05:37 -19960.008892] SLOW spr round 22 (radius: 5) [31:07:04 -19959.300756] SLOW spr round 23 (radius: 5) [31:08:23 -19959.300701] SLOW spr round 24 (radius: 10) [31:09:38 -19959.300692] SLOW spr round 25 (radius: 15) [31:11:05 -19959.300688] SLOW spr round 26 (radius: 20) [31:12:47 -19959.300685] SLOW spr round 27 (radius: 25) [31:14:43 -19958.789795] SLOW spr round 28 (radius: 5) [31:16:10 -19958.789792] SLOW spr round 29 (radius: 10) [31:17:32 -19958.789790] SLOW spr round 30 (radius: 15) [31:18:59 -19958.789787] SLOW spr round 31 (radius: 20) [31:20:43 -19958.789785] SLOW spr round 32 (radius: 25) [31:22:41 -19958.789783] Model parameter optimization (eps = 0.100000) [31:22:46] ML tree search #20, logLikelihood: -19958.648604 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.044367,0.085997) (0.365649,0.858264) (0.146318,0.603576) (0.443667,1.338950) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -19332.252663 AIC score: 42674.505326 / AICc score: 8086734.505326 / BIC score: 46110.217320 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=41). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMI3/3_mltree/Q6ZMI3.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMI3/3_mltree/Q6ZMI3.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMI3/3_mltree/Q6ZMI3.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6ZMI3/3_mltree/Q6ZMI3.raxml.log Analysis started: 04-Jul-2021 15:49:43 / finished: 05-Jul-2021 23:12:30 Elapsed time: 112966.320 seconds Consumed energy: 6514.025 Wh (= 33 km in an electric car, or 163 km with an e-scooter!)