RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 13-Jul-2021 22:27:39 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMB0/2_msa/Q6ZMB0_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMB0/3_mltree/Q6ZMB0 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMB0/2_msa/Q6ZMB0_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 320 sites

WARNING: Sequences tr_E1C4T5_E1C4T5_CHICK_9031 and tr_G1NRV5_G1NRV5_MELGA_9103 are exactly identical!
WARNING: Sequences tr_E1C4T5_E1C4T5_CHICK_9031 and tr_A0A226NNB8_A0A226NNB8_CALSU_9009 are exactly identical!
WARNING: Sequences tr_E1C4T5_E1C4T5_CHICK_9031 and tr_A0A226NZL2_A0A226NZL2_COLVI_9014 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_G1SBH9_G1SBH9_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_G3HUD9_G3HUD9_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and sp_Q7JK24_B3GT1_GORGO_9595 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_H2P7Q5_H2P7Q5_PONAB_9601 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_F1PGN6_F1PGN6_CANLF_9615 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and sp_Q7JK26_B3GT1_PANTR_9598 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_D3ZPD8_D3ZPD8_RAT_10116 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A286XVX9_A0A286XVX9_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and sp_Q9Y5Z6_B3GT1_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_F7DET1_F7DET1_MACMU_9544 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_F7H9D4_F7H9D4_CALJA_9483 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A287B819_A0A287B819_PIG_9823 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_G7PKQ8_G7PKQ8_MACFA_9541 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_L5K2D4_L5K2D4_PTEAL_9402 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A096NBK0_A0A096NBK0_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A0D9SBD5_A0A0D9SBD5_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A1U7T3R8_A0A1U7T3R8_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A1U7RA13_A0A1U7RA13_MESAU_10036 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A2K5KTG1_A0A2K5KTG1_CERAT_9531 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A2K6AM01_A0A2K6AM01_MACNE_9545 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A2K5XKM4_A0A2K5XKM4_MANLE_9568 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and sp_Q7JK25_B3GT1_PANPA_9597 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A2U3V6G2_A0A2U3V6G2_TURTR_9739 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A2U3VPC5_A0A2U3VPC5_ODORO_9708 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A2Y9J708_A0A2Y9J708_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A2Y9F107_A0A2Y9F107_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A384BT06_A0A384BT06_URSMA_29073 are exactly identical!
WARNING: Sequences sp_O54904_B3GT1_MOUSE_10090 and tr_A0A384A7K5_A0A384A7K5_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A2I2YLJ1_A0A2I2YLJ1_GORGO_9595 and tr_K7AXR1_K7AXR1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2YLJ1_A0A2I2YLJ1_GORGO_9595 and sp_Q9BYG0_B3GN5_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RQS7_G3RQS7_GORGO_9595 and tr_H2QHZ0_H2QHZ0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RQS7_G3RQS7_GORGO_9595 and sp_Q9NY97_B3GN2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RQS7_G3RQS7_GORGO_9595 and tr_A0A2R8ZMJ8_A0A2R8ZMJ8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2Q740_H2Q740_PANTR_9598 and tr_A0A2R9BTS2_A0A2R9BTS2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2RCH0_H2RCH0_PANTR_9598 and tr_A0A2R8Z8A3_A0A2R8Z8A3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_W5P4J6_W5P4J6_SHEEP_9940 and tr_Q3T0R9_Q3T0R9_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_Q7Z7M8_B3GN8_HUMAN_9606 and tr_A0A2R8ZUE2_A0A2R8ZUE2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F6W1X2_F6W1X2_MACMU_9544 and tr_A0A0D9SC12_A0A0D9SC12_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F6W1X2_F6W1X2_MACMU_9544 and tr_A0A2K5L4T6_A0A2K5L4T6_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6W1X2_F6W1X2_MACMU_9544 and tr_A0A2K5XQM1_A0A2K5XQM1_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6Z1M9_F6Z1M9_MACMU_9544 and tr_G7PXN7_G7PXN7_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7AT08_F7AT08_MACMU_9544 and tr_G7PMA7_G7PMA7_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7AT08_F7AT08_MACMU_9544 and tr_A0A096N903_A0A096N903_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7AT08_F7AT08_MACMU_9544 and tr_A0A2K5KQ09_A0A2K5KQ09_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F7AT08_F7AT08_MACMU_9544 and tr_A0A2K5XFM8_A0A2K5XFM8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7EYE7_F7EYE7_MACMU_9544 and tr_A0A2K6CMD1_A0A2K6CMD1_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7HQE6_F7HQE6_MACMU_9544 and tr_G7PKA0_G7PKA0_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7HQE6_F7HQE6_MACMU_9544 and tr_A0A0D9R2W6_A0A0D9R2W6_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G7NQ42_G7NQ42_MACMU_9544 and tr_A0A2K6AQC6_A0A2K6AQC6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H0ZB14_H0ZB14_TAEGU_59729 and tr_A0A218UKY9_A0A218UKY9_9PASE_299123 are exactly identical!
WARNING: Sequences tr_G7PJ80_G7PJ80_MACFA_9541 and tr_A0A096N2K3_A0A096N2K3_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G7PJ80_G7PJ80_MACFA_9541 and tr_A0A0D9S4V7_A0A0D9S4V7_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_U3KJH2_U3KJH2_FICAL_59894 and tr_A0A091EQ37_A0A091EQ37_CORBR_85066 are exactly identical!
WARNING: Sequences tr_U3HYV9_U3HYV9_ANAPL_8839 and tr_A0A091JCI3_A0A091JCI3_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_U3HYV9_U3HYV9_ANAPL_8839 and tr_A0A087QTL8_A0A087QTL8_APTFO_9233 are exactly identical!
WARNING: Sequences tr_U3HYV9_U3HYV9_ANAPL_8839 and tr_A0A093GSW8_A0A093GSW8_STRCA_441894 are exactly identical!
WARNING: Sequences tr_U3HYV9_U3HYV9_ANAPL_8839 and tr_A0A2I0MIS5_A0A2I0MIS5_COLLI_8932 are exactly identical!
WARNING: Sequences tr_U3HYV9_U3HYV9_ANAPL_8839 and tr_A0A1V4K6B2_A0A1V4K6B2_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A087YRX8_A0A087YRX8_POEFO_48698 and tr_A0A087YRX9_A0A087YRX9_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A091UUG1_A0A091UUG1_NIPNI_128390 and tr_A0A0A0A3M6_A0A0A0A3M6_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A1S3KL20_A0A1S3KL20_SALSA_8030 and tr_A0A060XX09_A0A060XX09_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A2D0Q7B5_A0A2D0Q7B5_ICTPU_7998 and tr_A0A2D0Q8B4_A0A2D0Q8B4_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0R1L9_A0A2D0R1L9_ICTPU_7998 and tr_A0A2D0R3Q8_A0A2D0R3Q8_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2U4A515_A0A2U4A515_TURTR_9739 and tr_A0A2Y9NPT6_A0A2Y9NPT6_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2Y9F7U2_A0A2Y9F7U2_PHYCD_9755 and tr_A0A384AVQ9_A0A384AVQ9_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 68

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMB0/3_mltree/Q6ZMB0.raxml.reduced.phy

Alignment comprises 1 partitions and 320 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 320 / 320
Gaps: 6.90 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMB0/3_mltree/Q6ZMB0.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 320 / 25600
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -603764.679000] Initial branch length optimization
[00:00:11 -511096.895412] Model parameter optimization (eps = 10.000000)
[00:01:11 -510464.556172] AUTODETECT spr round 1 (radius: 5)
[00:05:44 -331816.899846] AUTODETECT spr round 2 (radius: 10)
[00:10:45 -244806.111132] AUTODETECT spr round 3 (radius: 15)
[00:16:16 -212698.546231] AUTODETECT spr round 4 (radius: 20)
[00:23:10 -196432.901581] AUTODETECT spr round 5 (radius: 25)
[00:32:12 -181751.206182] SPR radius for FAST iterations: 25 (autodetect)
[00:32:12 -181751.206182] Model parameter optimization (eps = 3.000000)
[00:32:48 -181536.055572] FAST spr round 1 (radius: 25)
[00:37:53 -151976.090013] FAST spr round 2 (radius: 25)
[00:41:33 -150503.442748] FAST spr round 3 (radius: 25)
[00:44:37 -150378.893869] FAST spr round 4 (radius: 25)
[00:47:34 -150354.554916] FAST spr round 5 (radius: 25)
[00:50:17 -150351.610965] FAST spr round 6 (radius: 25)
[00:52:53 -150351.610957] Model parameter optimization (eps = 1.000000)
[00:53:04 -150350.860937] SLOW spr round 1 (radius: 5)
[00:56:43 -150320.112530] SLOW spr round 2 (radius: 5)
[01:00:19 -150308.973766] SLOW spr round 3 (radius: 5)
[01:03:48 -150306.108858] SLOW spr round 4 (radius: 5)
[01:07:19 -150304.769368] SLOW spr round 5 (radius: 5)
[01:10:46 -150304.769292] SLOW spr round 6 (radius: 10)
[01:14:31 -150288.625470] SLOW spr round 7 (radius: 5)
[01:19:08 -150288.625389] SLOW spr round 8 (radius: 10)
[01:22:58 -150288.625389] SLOW spr round 9 (radius: 15)
[01:28:29 -150288.625389] SLOW spr round 10 (radius: 20)
[01:36:16] [worker #2] ML tree search #3, logLikelihood: -150291.076094
[01:36:52] [worker #1] ML tree search #2, logLikelihood: -150287.651820
[01:38:20 -150288.625389] SLOW spr round 11 (radius: 25)
[01:50:26] [worker #3] ML tree search #4, logLikelihood: -150283.563239
[01:50:56 -150288.625389] Model parameter optimization (eps = 0.100000)

[01:51:05] [worker #0] ML tree search #1, logLikelihood: -150288.567904

[01:51:06 -604351.292906] Initial branch length optimization
[01:51:13 -510460.470255] Model parameter optimization (eps = 10.000000)
[01:51:42] [worker #4] ML tree search #5, logLikelihood: -150289.209010
[01:52:23 -509820.469950] AUTODETECT spr round 1 (radius: 5)
[01:57:03 -329067.707053] AUTODETECT spr round 2 (radius: 10)
[02:02:16 -244261.609317] AUTODETECT spr round 3 (radius: 15)
[02:07:43 -209152.285562] AUTODETECT spr round 4 (radius: 20)
[02:13:45 -190919.862184] AUTODETECT spr round 5 (radius: 25)
[02:20:32 -180961.752441] SPR radius for FAST iterations: 25 (autodetect)
[02:20:32 -180961.752441] Model parameter optimization (eps = 3.000000)
[02:21:15 -180866.413437] FAST spr round 1 (radius: 25)
[02:26:42 -152074.984971] FAST spr round 2 (radius: 25)
[02:30:24 -150578.859281] FAST spr round 3 (radius: 25)
[02:33:33 -150391.926291] FAST spr round 4 (radius: 25)
[02:36:32 -150358.578000] FAST spr round 5 (radius: 25)
[02:39:21 -150339.263248] FAST spr round 6 (radius: 25)
[02:42:01 -150335.370415] FAST spr round 7 (radius: 25)
[02:44:37 -150335.370387] Model parameter optimization (eps = 1.000000)
[02:45:07 -150319.963557] SLOW spr round 1 (radius: 5)
[02:48:50 -150297.905220] SLOW spr round 2 (radius: 5)
[02:52:23 -150293.722052] SLOW spr round 3 (radius: 5)
[02:55:53 -150293.266619] SLOW spr round 4 (radius: 5)
[02:59:20 -150293.266616] SLOW spr round 5 (radius: 10)
[03:02:50 -150292.215729] SLOW spr round 6 (radius: 5)
[03:07:28 -150292.215404] SLOW spr round 7 (radius: 10)
[03:10:47] [worker #2] ML tree search #8, logLikelihood: -150288.437193
[03:11:18 -150292.215398] SLOW spr round 8 (radius: 15)
[03:16:55 -150292.215398] SLOW spr round 9 (radius: 20)
[03:25:44] [worker #3] ML tree search #9, logLikelihood: -150289.280347
[03:27:07 -150292.215398] SLOW spr round 10 (radius: 25)
[03:28:55] [worker #4] ML tree search #10, logLikelihood: -150277.796760
[03:40:21 -150292.215398] Model parameter optimization (eps = 0.100000)

[03:40:31] [worker #0] ML tree search #6, logLikelihood: -150292.194208

[03:40:31 -605421.483375] Initial branch length optimization
[03:40:43 -509910.591168] Model parameter optimization (eps = 10.000000)
[03:41:48 -509386.517071] AUTODETECT spr round 1 (radius: 5)
[03:44:19] [worker #1] ML tree search #7, logLikelihood: -151372.425695
[03:46:30 -337723.097150] AUTODETECT spr round 2 (radius: 10)
[03:51:39 -253844.619008] AUTODETECT spr round 3 (radius: 15)
[03:57:08 -205273.904939] AUTODETECT spr round 4 (radius: 20)
[04:03:04 -188607.884507] AUTODETECT spr round 5 (radius: 25)
[04:10:54 -180970.948287] SPR radius for FAST iterations: 25 (autodetect)
[04:10:54 -180970.948287] Model parameter optimization (eps = 3.000000)
[04:11:33 -180783.612622] FAST spr round 1 (radius: 25)
[04:16:41 -151842.397613] FAST spr round 2 (radius: 25)
[04:20:30 -150484.649266] FAST spr round 3 (radius: 25)
[04:23:43 -150346.980837] FAST spr round 4 (radius: 25)
[04:26:43 -150337.471067] FAST spr round 5 (radius: 25)
[04:29:32 -150326.635555] FAST spr round 6 (radius: 25)
[04:32:16 -150326.635475] Model parameter optimization (eps = 1.000000)
[04:32:40 -150319.825268] SLOW spr round 1 (radius: 5)
[04:36:27 -150289.936609] SLOW spr round 2 (radius: 5)
[04:40:05 -150287.389861] SLOW spr round 3 (radius: 5)
[04:43:41 -150287.389844] SLOW spr round 4 (radius: 10)
[04:47:17 -150287.389842] SLOW spr round 5 (radius: 15)
[04:53:06 -150286.927789] SLOW spr round 6 (radius: 5)
[04:58:07 -150286.927735] SLOW spr round 7 (radius: 10)
[05:02:20 -150286.927734] SLOW spr round 8 (radius: 15)
[05:04:48] [worker #4] ML tree search #15, logLikelihood: -150306.668847
[05:07:46 -150286.927733] SLOW spr round 9 (radius: 20)
[05:12:32] [worker #3] ML tree search #14, logLikelihood: -150279.063620
[05:17:35 -150286.927732] SLOW spr round 10 (radius: 25)
[05:30:06 -150285.061794] SLOW spr round 11 (radius: 5)
[05:30:31] [worker #2] ML tree search #13, logLikelihood: -150301.859579
[05:35:14 -150283.230747] SLOW spr round 12 (radius: 5)
[05:39:32 -150283.230601] SLOW spr round 13 (radius: 10)
[05:43:17 -150283.230598] SLOW spr round 14 (radius: 15)
[05:48:52 -150283.230597] SLOW spr round 15 (radius: 20)
[05:58:29 -150283.230596] SLOW spr round 16 (radius: 25)
[05:59:52] [worker #1] ML tree search #12, logLikelihood: -150310.229204
[06:10:55 -150283.230595] Model parameter optimization (eps = 0.100000)

[06:11:18] [worker #0] ML tree search #11, logLikelihood: -150283.127999

[06:11:18 -602891.534379] Initial branch length optimization
[06:11:31 -509382.085111] Model parameter optimization (eps = 10.000000)
[06:12:34 -508774.710117] AUTODETECT spr round 1 (radius: 5)
[06:17:06 -334985.057049] AUTODETECT spr round 2 (radius: 10)
[06:22:19 -234234.557024] AUTODETECT spr round 3 (radius: 15)
[06:27:54 -203351.087999] AUTODETECT spr round 4 (radius: 20)
[06:34:36 -177794.711674] AUTODETECT spr round 5 (radius: 25)
[06:41:06 -175223.046245] SPR radius for FAST iterations: 25 (autodetect)
[06:41:06 -175223.046245] Model parameter optimization (eps = 3.000000)
[06:41:43 -175091.893008] FAST spr round 1 (radius: 25)
[06:46:39 -151538.210088] FAST spr round 2 (radius: 25)
[06:49:23] [worker #4] ML tree search #20, logLikelihood: -150721.685993
[06:49:56 -150451.811855] FAST spr round 3 (radius: 25)
[06:53:01 -150349.394314] FAST spr round 4 (radius: 25)
[06:55:52 -150337.347348] FAST spr round 5 (radius: 25)
[06:58:33 -150337.347304] Model parameter optimization (eps = 1.000000)
[06:59:04 -150331.052162] SLOW spr round 1 (radius: 5)
[07:02:54 -150287.340728] SLOW spr round 2 (radius: 5)
[07:06:32 -150278.272001] SLOW spr round 3 (radius: 5)
[07:10:01 -150278.271588] SLOW spr round 4 (radius: 10)
[07:11:52] [worker #3] ML tree search #19, logLikelihood: -150275.081058
[07:13:41 -150269.774209] SLOW spr round 5 (radius: 5)
[07:18:22 -150268.303897] SLOW spr round 6 (radius: 5)
[07:22:24 -150268.303892] SLOW spr round 7 (radius: 10)
[07:26:02 -150268.303892] SLOW spr round 8 (radius: 15)
[07:31:41 -150268.303892] SLOW spr round 9 (radius: 20)
[07:41:17 -150268.303892] SLOW spr round 10 (radius: 25)
[07:41:59] [worker #1] ML tree search #17, logLikelihood: -150284.176510
[07:53:42 -150268.303892] Model parameter optimization (eps = 0.100000)

[07:53:49] [worker #0] ML tree search #16, logLikelihood: -150268.283009

[08:33:25] [worker #2] ML tree search #18, logLikelihood: -150278.550615

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.114102,0.215624) (0.286971,0.336184) (0.320479,1.037526) (0.278448,1.962366) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -150268.283009

AIC score: 304546.566019 / AICc score: 8348606.566019 / BIC score: 312102.049615
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=320).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMB0/3_mltree/Q6ZMB0.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMB0/3_mltree/Q6ZMB0.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMB0/3_mltree/Q6ZMB0.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6ZMB0/3_mltree/Q6ZMB0.raxml.log

Analysis started: 13-Jul-2021 22:27:39 / finished: 14-Jul-2021 07:01:05

Elapsed time: 30805.559 seconds