RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 18:12:26 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6XPR3/2_msa/Q6XPR3_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6XPR3/3_mltree/Q6XPR3.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6XPR3/4_raxmlng_ancestral/Q6XPR3 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626102746 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6XPR3/2_msa/Q6XPR3_nogap_msa.fasta [00:00:00] Loaded alignment with 728 taxa and 784 sites WARNING: Sequences tr_A0A1D5PJJ4_A0A1D5PJJ4_CHICK_9031 and tr_A0A2I0LLS9_A0A2I0LLS9_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PJJ4_A0A1D5PJJ4_CHICK_9031 and tr_A0A1V4JZG4_A0A1V4JZG4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PJJ4_A0A1D5PJJ4_CHICK_9031 and tr_A0A226MEW3_A0A226MEW3_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PJJ4_A0A1D5PJJ4_CHICK_9031 and tr_A0A226NI21_A0A226NI21_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1C251_E1C251_CHICK_9031 and tr_G1MRY2_G1MRY2_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C251_E1C251_CHICK_9031 and tr_A0A226N1K0_A0A226N1K0_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C251_E1C251_CHICK_9031 and tr_A0A226P850_A0A226P850_COLVI_9014 are exactly identical! WARNING: Sequences sp_P27003_S10AA_CHICK_9031 and tr_G1NK73_G1NK73_MELGA_9103 are exactly identical! WARNING: Sequences sp_P27003_S10AA_CHICK_9031 and tr_A0A226MES4_A0A226MES4_CALSU_9009 are exactly identical! WARNING: Sequences sp_P27003_S10AA_CHICK_9031 and tr_A0A226NUS8_A0A226NUS8_COLVI_9014 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_W5NRD4_W5NRD4_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_I3LX39_I3LX39_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A286XNC8_A0A286XNC8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and sp_P02639_S10A1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_M3XA34_M3XA34_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A2U3W4T9_A0A2U3W4T9_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A2U3YWQ1_A0A2U3YWQ1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A2Y9IHF9_A0A2Y9IHF9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A2Y9MD03_A0A2Y9MD03_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A2Y9FVI4_A0A2Y9FVI4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YA96_M3YA96_MUSPF_9669 and tr_A0A383ZU35_A0A383ZU35_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_G3RL51_G3RL51_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_I6L539_I6L539_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and sp_Q5RC36_S10A1_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_H2Q035_H2Q035_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and sp_P23297_S10A1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_F7HGE0_F7HGE0_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_F6QF56_F6QF56_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_G7NUH2_G7NUH2_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_A0A096NYU6_A0A096NYU6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_A0A0D9S5N2_A0A0D9S5N2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_A0A2K5NH83_A0A2K5NH83_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_A0A2K6DJR8_A0A2K6DJR8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_A0A2K5Y2G8_A0A2K5Y2G8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RHH7_G1RHH7_NOMLE_61853 and tr_A0A2R9BUH5_A0A2R9BUH5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_H2N5T7_H2N5T7_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and sp_Q6SQH4_S10AA_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_H2Q001_H2Q001_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_W5QIU9_W5QIU9_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_I3N1Z2_I3N1Z2_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and sp_P60903_S10AA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and sp_P62504_S10AA_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_G3T711_G3T711_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_G3WV01_G3WV01_SARHA_9305 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_F7FGI3_F7FGI3_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_F2Z5M2_F2Z5M2_PIG_9823 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_G7NTU2_G7NTU2_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and sp_P60902_S10AA_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_A0A096MSI7_A0A096MSI7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_A0A0D9S5R0_A0A0D9S5R0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_A0A1U7U2W8_A0A1U7U2W8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_A0A2K5KUS4_A0A2K5KUS4_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_A0A2K6C8P3_A0A2K6C8P3_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_A0A2K5XGX7_A0A2K5XGX7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_A0A2R9BHV8_A0A2R9BHV8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_A0A2U4A278_A0A2U4A278_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_A0A2Y9L6K7_A0A2Y9L6K7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1RRP8_G1RRP8_NOMLE_61853 and tr_A0A2Y9FGV5_A0A2Y9FGV5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1Q9C5_G1Q9C5_MYOLU_59463 and tr_A0A1U7T1U2_A0A1U7T1U2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3H328_G3H328_CRIGR_10029 and tr_A0A1U7Q6F1_A0A1U7Q6F1_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3HC24_G3HC24_CRIGR_10029 and tr_A0A1U7R3I4_A0A1U7R3I4_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3SGV1_G3SGV1_GORGO_9595 and tr_H2QP64_H2QP64_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SGV1_G3SGV1_GORGO_9595 and tr_A0A2R8ZMX9_A0A2R8ZMX9_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and sp_Q6YNR6_S100B_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and tr_F6RF49_F6RF49_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and sp_P04271_S100B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and tr_G1L2S1_G1L2S1_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and tr_A0A2I2UW07_A0A2I2UW07_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and tr_A0A2Y9FKI7_A0A2Y9FKI7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and tr_A0A384DNP5_A0A384DNP5_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2J8RC22_A0A2J8RC22_PONAB_9601 and tr_A0A383ZCB7_A0A383ZCB7_BALAS_310752 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and sp_P25815_S100P_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and tr_F6PWQ7_F6PWQ7_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and tr_A0A096NZC3_A0A096NZC3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and tr_A0A0D9RU76_A0A0D9RU76_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and tr_A0A2K5NID4_A0A2K5NID4_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and tr_A0A2K6DNK8_A0A2K6DNK8_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2PCU7_H2PCU7_PONAB_9601 and tr_A0A2K5XH25_A0A2K5XH25_MANLE_9568 are exactly identical! WARNING: Sequences tr_B8NAU1_B8NAU1_ASPFN_332952 and tr_A0A1S9DCW6_A0A1S9DCW6_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_J9NYC2_J9NYC2_CANLF_9615 and tr_A0A2U3ZJL2_A0A2U3ZJL2_ODORO_9708 are exactly identical! WARNING: Sequences tr_J9NYC2_J9NYC2_CANLF_9615 and tr_A0A2U3XAI3_A0A2U3XAI3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_W5PVB6_W5PVB6_SHEEP_9940 and tr_G7PWM2_G7PWM2_MACFA_9541 are exactly identical! WARNING: Sequences tr_W5PVB6_W5PVB6_SHEEP_9940 and tr_A0A0D9R407_A0A0D9R407_CHLSB_60711 are exactly identical! WARNING: Sequences tr_W5PVB6_W5PVB6_SHEEP_9940 and tr_A0A2U3VAA5_A0A2U3VAA5_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5PVB6_W5PVB6_SHEEP_9940 and tr_A0A2U3X2C1_A0A2U3X2C1_ODORO_9708 are exactly identical! WARNING: Sequences tr_W5PVB6_W5PVB6_SHEEP_9940 and tr_A0A2U3Z3M3_A0A2U3Z3M3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_W5PVB6_W5PVB6_SHEEP_9940 and tr_A0A2Y9Q578_A0A2Y9Q578_DELLE_9749 are exactly identical! WARNING: Sequences tr_I3MDN4_I3MDN4_ICTTR_43179 and tr_A0A286XTU0_A0A286XTU0_CAVPO_10141 are exactly identical! WARNING: Sequences tr_B5FXV2_B5FXV2_TAEGU_59729 and tr_U3KFS2_U3KFS2_FICAL_59894 are exactly identical! WARNING: Sequences tr_D2HBQ5_D2HBQ5_AILME_9646 and tr_A0A384CG76_A0A384CG76_URSMA_29073 are exactly identical! WARNING: Sequences tr_L5JWN7_L5JWN7_PTEAL_9402 and tr_M3WD86_M3WD86_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A091ILC5_A0A091ILC5_EGRGA_188379 and tr_A0A091VLU4_A0A091VLU4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091ILC5_A0A091ILC5_EGRGA_188379 and tr_A0A087QP91_A0A087QP91_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091V497_A0A091V497_NIPNI_128390 and tr_A0A087R9H8_A0A087R9H8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091V497_A0A091V497_NIPNI_128390 and tr_A0A091V676_A0A091V676_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091V497_A0A091V497_NIPNI_128390 and tr_A0A2I0LXI2_A0A2I0LXI2_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A091V497_A0A091V497_NIPNI_128390 and tr_A0A1V4L055_A0A1V4L055_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0M190_A0A2I0M190_COLLI_8932 and tr_A0A1V4L1H1_A0A1V4L1H1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3RWW0_A0A1S3RWW0_SALSA_8030 and tr_A0A060WZ60_A0A060WZ60_ONCMY_8022 are exactly identical! WARNING: Sequences tr_M4UZZ7_M4UZZ7_SALSA_8030 and tr_A0A060YVE5_A0A060YVE5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0QYR7_A0A2D0QYR7_ICTPU_7998 and tr_A0A2D0QYS7_A0A2D0QYS7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SZ10_A0A2D0SZ10_ICTPU_7998 and tr_A0A2D0SZ13_A0A2D0SZ13_ICTPU_7998 are exactly identical! WARNING: Duplicate sequences found: 102 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6XPR3/4_raxmlng_ancestral/Q6XPR3.raxml.reduced.phy Alignment comprises 1 partitions and 784 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 784 Gaps: 69.50 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6XPR3/4_raxmlng_ancestral/Q6XPR3.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6XPR3/3_mltree/Q6XPR3.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 196 / 15680 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -189454.504039 [00:00:00 -189454.504039] Initial branch length optimization [00:00:01 -164652.163218] Model parameter optimization (eps = 0.100000) [00:00:47] Tree #1, final logLikelihood: -163877.379095 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.075903,0.517500) (0.012153,0.441043) (0.152913,0.553576) (0.759031,1.147135) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6XPR3/4_raxmlng_ancestral/Q6XPR3.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6XPR3/4_raxmlng_ancestral/Q6XPR3.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6XPR3/4_raxmlng_ancestral/Q6XPR3.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6XPR3/4_raxmlng_ancestral/Q6XPR3.raxml.log Analysis started: 12-Jul-2021 18:12:26 / finished: 12-Jul-2021 18:13:18 Elapsed time: 52.364 seconds Consumed energy: 4.285 Wh