RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 17:43:46 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6VB84/2_msa/Q6VB84_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6VB84/3_mltree/Q6VB84.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6VB84/4_raxmlng_ancestral/Q6VB84 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626101026 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6VB84/2_msa/Q6VB84_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 417 sites WARNING: Sequences tr_B4QI21_B4QI21_DROSI_7240 and tr_B4I8C7_B4I8C7_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QYR8_B4QYR8_DROSI_7240 and tr_B4IH17_B4IH17_DROSE_7238 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_M3Z6V5_M3Z6V5_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_G1RLU0_G1RLU0_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_G3GRN3_G3GRN3_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_E2R277_E2R277_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_H2Q9J4_H2Q9J4_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_F6WWP4_F6WWP4_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_I3NDG9_I3NDG9_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_H0XYS0_H0XYS0_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and sp_Q99853_FOXB1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_F7D628_F7D628_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_F7DU19_F7DU19_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A287ANN5_A0A287ANN5_PIG_9823 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_D2HLR1_D2HLR1_AILME_9646 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_E1B7H0_E1B7H0_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_L5K224_L5K224_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_M3XBW1_M3XBW1_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A096NEC7_A0A096NEC7_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A0D9SEE6_A0A0D9SEE6_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A1U7SN79_A0A1U7SN79_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A3Q0D0R3_A0A3Q0D0R3_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A2K5L201_A0A2K5L201_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A2K6AW98_A0A2K6AW98_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A2Y9K7L1_A0A2Y9K7L1_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A2Y9NVG0_A0A2Y9NVG0_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A2Y9FBI2_A0A2Y9FBI2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G3R1I1_G3R1I1_GORGO_9595 and tr_A0A096NKI7_A0A096NKI7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_Q28X48_Q28X48_DROPS_46245 and tr_B4H512_B4H512_DROPE_7234 are exactly identical! WARNING: Sequences tr_H2R911_H2R911_PANTR_9598 and tr_A0A0D9SAF3_A0A0D9SAF3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2R911_H2R911_PANTR_9598 and tr_A0A2K5KYE5_A0A2K5KYE5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A3B5QXG1_A0A3B5QXG1_XIPMA_8083 and tr_A0A087YBY6_A0A087YBY6_POEFO_48698 are exactly identical! WARNING: Sequences tr_H9J6F9_H9J6F9_BOMMO_7091 and sp_Q17241_SGF1_BOMMO_7091 are exactly identical! WARNING: Sequences tr_A0A158NCG0_A0A158NCG0_ATTCE_12957 and tr_A0A195BXA0_A0A195BXA0_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158ND77_A0A158ND77_ATTCE_12957 and tr_A0A195B0T4_A0A195B0T4_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NJ79_A0A158NJ79_ATTCE_12957 and tr_F4WCG9_F4WCG9_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NJ79_A0A158NJ79_ATTCE_12957 and tr_A0A195B6K2_A0A195B6K2_9HYME_520822 are exactly identical! WARNING: Sequences sp_Q99958_FOXC2_HUMAN_9606 and tr_F7D313_F7D313_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q99958_FOXC2_HUMAN_9606 and tr_A0A0D9SAX6_A0A0D9SAX6_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q99958_FOXC2_HUMAN_9606 and tr_A0A2K6CY95_A0A2K6CY95_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6YN08_F6YN08_MACMU_9544 and tr_A0A0D9SAF9_A0A0D9SAF9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6YN08_F6YN08_MACMU_9544 and tr_A0A2K6B269_A0A2K6B269_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0Z4R5_H0Z4R5_TAEGU_59729 and tr_A0A1V4JDA3_A0A1V4JDA3_PATFA_372326 are exactly identical! WARNING: Sequences tr_F4WX03_F4WX03_ACREC_103372 and tr_A0A151JRJ5_A0A151JRJ5_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A096NSE8_A0A096NSE8_PAPAN_9555 and tr_A0A0D9SAG0_A0A0D9SAG0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096NSE8_A0A096NSE8_PAPAN_9555 and tr_A0A2K5NVF9_A0A2K5NVF9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9RV20_A0A0D9RV20_CHLSB_60711 and tr_A0A2K5LFZ4_A0A2K5LFZ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0L0BYY6_A0A0L0BYY6_LUCCU_7375 and tr_A0A0L0CEH8_A0A0L0CEH8_LUCCU_7375 are exactly identical! WARNING: Sequences tr_A0A091EBU0_A0A091EBU0_CORBR_85066 and tr_A0A093QDW4_A0A093QDW4_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EBU0_A0A091EBU0_CORBR_85066 and tr_A0A091GA95_A0A091GA95_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091EYS4_A0A091EYS4_CORBR_85066 and tr_A0A091FMZ2_A0A091FMZ2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A091VHA2_A0A091VHA2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A087REH7_A0A087REH7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A093H7J9_A0A093H7J9_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A091WEI1_A0A091WEI1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A099Z6V4_A0A099Z6V4_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A0A0A5B6_A0A0A0A5B6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A093GHH4_A0A093GHH4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A091IYN4_A0A091IYN4_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091J102_A0A091J102_EGRGA_188379 and tr_A0A091G702_A0A091G702_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091J102_A0A091J102_EGRGA_188379 and tr_A0A091IFM1_A0A091IFM1_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0N1IAY8_A0A0N1IAY8_PAPMA_76193 and tr_A0A194PQL6_A0A194PQL6_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A194RKV3_A0A194RKV3_PAPMA_76193 and tr_A0A194QDB4_A0A194QDB4_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A091USI2_A0A091USI2_NIPNI_128390 and tr_A0A087QY64_A0A087QY64_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A087RIH7_A0A087RIH7_APTFO_9233 and tr_A0A099Z6E4_A0A099Z6E4_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A087RIH7_A0A087RIH7_APTFO_9233 and tr_A0A093G9H0_A0A093G9H0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A087RIH7_A0A087RIH7_APTFO_9233 and tr_A0A091HK86_A0A091HK86_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V1CZ04_A0A0V1CZ04_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V0WXU4_A0A0V0WXU4_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V0ZXJ4_A0A0V0ZXJ4_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V1NSS3_A0A0V1NSS3_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V0U6A9_A0A0V0U6A9_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1S3LX54_A0A1S3LX54_SALSA_8030 and tr_A0A060Y253_A0A060Y253_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MSD7_A0A226MSD7_CALSU_9009 and tr_A0A226PG57_A0A226PG57_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MSM9_A0A226MSM9_CALSU_9009 and tr_A0A226PPN8_A0A226PPN8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NF86_A0A226NF86_CALSU_9009 and tr_A0A226PPX5_A0A226PPX5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0SWT4_A0A2D0SWT4_ICTPU_7998 and tr_A0A2D0SWU4_A0A2D0SWU4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4AVE9_A0A2U4AVE9_TURTR_9739 and tr_A0A2Y9LBM3_A0A2Y9LBM3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3WEA6_A0A2U3WEA6_ODORO_9708 and tr_A0A2U3YUG8_A0A2U3YUG8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3WI61_A0A2U3WI61_ODORO_9708 and tr_A0A2U3XKB5_A0A2U3XKB5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9NCP2_A0A2Y9NCP2_DELLE_9749 and tr_A0A2Y9SAG7_A0A2Y9SAG7_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 81 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6VB84/4_raxmlng_ancestral/Q6VB84.raxml.reduced.phy Alignment comprises 1 partitions and 417 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 417 Gaps: 50.31 % Invariant sites: 2.88 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6VB84/4_raxmlng_ancestral/Q6VB84.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6VB84/3_mltree/Q6VB84.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 105 / 8400 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -236286.364081 [00:00:00 -236286.364081] Initial branch length optimization [00:00:02 -124452.360330] Model parameter optimization (eps = 0.100000) [00:02:56] Tree #1, final logLikelihood: -124079.804665 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.126364,0.039352) (0.090988,0.069966) (0.107259,0.495374) (0.675390,1.385168) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6VB84/4_raxmlng_ancestral/Q6VB84.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6VB84/4_raxmlng_ancestral/Q6VB84.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6VB84/4_raxmlng_ancestral/Q6VB84.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q6VB84/4_raxmlng_ancestral/Q6VB84.raxml.log Analysis started: 12-Jul-2021 17:43:46 / finished: 12-Jul-2021 17:46:47 Elapsed time: 180.766 seconds