RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 08-Jul-2021 00:20:31 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6UB99/2_msa/Q6UB99_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6UB99/3_mltree/Q6UB99 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6UB99/2_msa/Q6UB99_trimmed_msa.fasta [00:00:00] Loaded alignment with 956 taxa and 79 sites WARNING: Sequences tr_E2A135_E2A135_CAMFO_104421 and tr_E2AIJ1_E2AIJ1_CAMFO_104421 are exactly identical! WARNING: Sequences tr_B8JLP7_B8JLP7_DANRE_7955 and tr_A0A2D0T909_A0A2D0T909_ICTPU_7998 are exactly identical! WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_G1NAA1_G1NAA1_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_U3IK58_U3IK58_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A091JN73_A0A091JN73_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A093HDV8_A0A093HDV8_STRCA_441894 are exactly identical! WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A0A0A3H5_A0A0A0A3H5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A2I0MXN5_A0A2I0MXN5_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A1V4J919_A0A1V4J919_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A226NGD6_A0A226NGD6_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1BXQ1_E1BXQ1_CHICK_9031 and tr_A0A226P1U1_A0A226P1U1_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_G1N7A2_G1N7A2_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_K7G9F1_K7G9F1_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_H0ZBW2_H0ZBW2_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_U3JKN7_U3JKN7_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_U3I7N9_U3I7N9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A151P4R3_A0A151P4R3_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A0Q3MCI5_A0A0Q3MCI5_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A091EZN0_A0A091EZN0_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A091JL90_A0A091JL90_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A093SN16_A0A093SN16_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A091USF9_A0A091USF9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A087QQ48_A0A087QQ48_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A093HTG7_A0A093HTG7_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A091XEA7_A0A091XEA7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A099YXH9_A0A099YXH9_TINGU_94827 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A091G969_A0A091G969_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A0A0ASG2_A0A0A0ASG2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A2I0LLX1_A0A2I0LLX1_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A093GU87_A0A093GU87_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A091HIF2_A0A091HIF2_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A1U8D7W8_A0A1U8D7W8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A1V4K1J4_A0A1V4K1J4_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A218USD3_A0A218USD3_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A226NC66_A0A226NC66_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NXK5_F1NXK5_CHICK_9031 and tr_A0A226PEB1_A0A226PEB1_COLVI_9014 are exactly identical! WARNING: Sequences sp_A2AQH4_BCORL_MOUSE_10090 and tr_G3H3X4_G3H3X4_CRIGR_10029 are exactly identical! WARNING: Sequences sp_A2AQH4_BCORL_MOUSE_10090 and tr_F1LYC7_F1LYC7_RAT_10116 are exactly identical! WARNING: Sequences sp_A2AQH4_BCORL_MOUSE_10090 and tr_A0A3Q0D2F3_A0A3Q0D2F3_MESAU_10036 are exactly identical! WARNING: Sequences sp_E9Q4F7_ANR11_MOUSE_10090 and tr_D3ZSU6_D3ZSU6_RAT_10116 are exactly identical! WARNING: Sequences sp_E9Q4F7_ANR11_MOUSE_10090 and tr_A0A1S3GT55_A0A1S3GT55_DIPOR_10020 are exactly identical! WARNING: Sequences sp_E9Q4F7_ANR11_MOUSE_10090 and tr_A0A1U8BV00_A0A1U8BV00_MESAU_10036 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_M3Y008_M3Y008_MUSPF_9669 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G1R5J4_G1R5J4_NOMLE_61853 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G1PBX6_G1PBX6_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G3HZ26_G3HZ26_CRIGR_10029 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G3SDW9_G3SDW9_GORGO_9595 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_H2NVV6_H2NVV6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G1TYL7_G1TYL7_RABIT_9986 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_E2QVN0_E2QVN0_CANLF_9615 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_K7CPS3_K7CPS3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_F7BT39_F7BT39_MONDO_13616 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_F7BFZ6_F7BFZ6_HORSE_9796 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_W5NS66_W5NS66_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_I3N149_I3N149_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_H0Y0A3_H0Y0A3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and sp_Q6UB98_ANR12_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G3T5S5_G3T5S5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G3VQW0_G3VQW0_SARHA_9305 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_U3EHI1_U3EHI1_CALJA_9483 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_F1SM99_F1SM99_PIG_9823 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_D2H765_D2H765_AILME_9646 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_G7PWD8_G7PWD8_MACFA_9541 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_E1BKN6_E1BKN6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_L5K4Q0_L5K4Q0_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A337S763_A0A337S763_FELCA_9685 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A096N7Y0_A0A096N7Y0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A0D9RYA1_A0A0D9RYA1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A1S3GU99_A0A1S3GU99_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2K5MD58_A0A2K5MD58_CERAT_9531 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2K6CNP3_A0A2K6CNP3_MACNE_9545 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2K5Z7H5_A0A2K5Z7H5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2R9ABR7_A0A2R9ABR7_PANPA_9597 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2U4A5H0_A0A2U4A5H0_TURTR_9739 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2U3WXT2_A0A2U3WXT2_ODORO_9708 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2U3YFH8_A0A2U3YFH8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2Y9E290_A0A2Y9E290_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2Y9LBM1_A0A2Y9LBM1_DELLE_9749 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A2Y9F494_A0A2Y9F494_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A384C0F8_A0A384C0F8_URSMA_29073 are exactly identical! WARNING: Sequences tr_G5E893_G5E893_MOUSE_10090 and tr_A0A384B9P3_A0A384B9P3_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q6NZL6_TONSL_MOUSE_10090 and tr_G3RZ20_G3RZ20_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q6NZL6_TONSL_MOUSE_10090 and sp_D4A615_TONSL_RAT_10116 are exactly identical! WARNING: Sequences sp_Q6NZL6_TONSL_MOUSE_10090 and tr_G5C5S3_G5C5S3_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q8CGN4_BCOR_MOUSE_10090 and tr_D4A2J9_D4A2J9_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2I2Z394_A0A2I2Z394_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_H2PG36_H2PG36_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_G1SLI1_G1SLI1_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_F1Q0W4_F1Q0W4_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_K7AZ13_K7AZ13_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_F6UKP1_F6UKP1_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_I3MM70_I3MM70_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_H0WP61_H0WP61_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and sp_Q9BQI6_SLF1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_F7CZP2_F7CZP2_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_G3TFP4_G3TFP4_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_F1RNW0_F1RNW0_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_G1LMR0_G1LMR0_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_G7P7Y5_G7P7Y5_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_L5KL67_L5KL67_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_M3XBF4_M3XBF4_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A096MV07_A0A096MV07_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A0D9RQ16_A0A0D9RQ16_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A1S3WM07_A0A1S3WM07_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2K5P771_A0A2K5P771_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2K6DWI4_A0A2K6DWI4_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2K5YGL6_A0A2K5YGL6_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2R9CP52_A0A2R9CP52_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2U4AWT0_A0A2U4AWT0_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2U3X4F2_A0A2U3X4F2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2Y9QUV9_A0A2Y9QUV9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2Y9JHR5_A0A2Y9JHR5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2Y9PND6_A0A2Y9PND6_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A2Y9EL96_A0A2Y9EL96_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A384CW74_A0A384CW74_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XYM8_M3XYM8_MUSPF_9669 and tr_A0A384BCS7_A0A384BCS7_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Y4D3_M3Y4D3_MUSPF_9669 and tr_A0A2Y9JEH0_A0A2Y9JEH0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_G1SJ80_G1SJ80_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_J9PAS0_J9PAS0_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_G1L2M0_G1L2M0_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_A0A2U3ZDJ5_A0A2U3ZDJ5_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_A0A2U3YN86_A0A2U3YN86_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_A0A2Y9K1X3_A0A2Y9K1X3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y859_M3Y859_MUSPF_9669 and tr_A0A384D2R8_A0A384D2R8_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y8V1_M3Y8V1_MUSPF_9669 and tr_A0A2U3W009_A0A2U3W009_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y8V1_M3Y8V1_MUSPF_9669 and tr_A0A2Y9IKP2_A0A2Y9IKP2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_G1QL55_G1QL55_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_G3GSG2_G3GSG2_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_G3RG00_G3RG00_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_H2PVB6_H2PVB6_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_G1TCX2_G1TCX2_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_E2RME7_E2RME7_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_K7CY39_K7CY39_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_W5NSC7_W5NSC7_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_H0WUU9_H0WUU9_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_H0V1W3_H0V1W3_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and sp_Q6W2J9_BCOR_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_F7BB89_F7BB89_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_G3TDA0_G3TDA0_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_F7I844_F7I844_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_F1RXQ4_F1RXQ4_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_D2GWV8_D2GWV8_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_G7Q2I7_G7Q2I7_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_G3X8E4_G3X8E4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_L5K8P4_L5K8P4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A2I2UGM1_A0A2I2UGM1_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A096N4A9_A0A096N4A9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A091DB30_A0A091DB30_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A0D9RNG3_A0A0D9RNG3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A1S2ZLF1_A0A1S2ZLF1_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A1S3G1N8_A0A1S3G1N8_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A1U7SZH2_A0A1U7SZH2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A1U7QTL1_A0A1U7QTL1_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A2K5MHN3_A0A2K5MHN3_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A2K6B3Y7_A0A2K6B3Y7_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A2K5XWI4_A0A2K5XWI4_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A2R8ZUV0_A0A2R8ZUV0_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A2U3ZG21_A0A2U3ZG21_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A2U3XQ96_A0A2U3XQ96_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A2Y9R7E8_A0A2Y9R7E8_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A2Y9K1H7_A0A2Y9K1H7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A2Y9M3T0_A0A2Y9M3T0_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A2Y9S7Q6_A0A2Y9S7Q6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YMF6_M3YMF6_MUSPF_9669 and tr_A0A383ZYQ6_A0A383ZYQ6_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_H2PWR4_H2PWR4_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_F1PS62_F1PS62_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_W5Q0X7_W5Q0X7_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_H0XX72_H0XX72_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_H0W6P6_H0W6P6_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_G3U9F0_G3U9F0_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_F1RTH5_F1RTH5_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_G1M8Y0_G1M8Y0_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_G7Q3N6_G7Q3N6_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_F1MML3_F1MML3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A2I2U5H3_A0A2I2U5H3_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A0D9R6N9_A0A0D9R6N9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A1S3FC06_A0A1S3FC06_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A3Q0DUA7_A0A3Q0DUA7_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A2K5NXK5_A0A2K5NXK5_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A2K6BNV8_A0A2K6BNV8_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A2U3ZFK7_A0A2U3ZFK7_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A2U3XV14_A0A2U3XV14_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A2Y9R6C3_A0A2Y9R6C3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A2Y9M825_A0A2Y9M825_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A2Y9EIL4_A0A2Y9EIL4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A384CYM8_A0A384CYM8_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z167_M3Z167_MUSPF_9669 and tr_A0A384A127_A0A384A127_BALAS_310752 are exactly identical! WARNING: Sequences tr_Q8IQI3_Q8IQI3_DROME_7227 and tr_B4HG57_B4HG57_DROSE_7238 are exactly identical! WARNING: Sequences tr_H2LM92_H2LM92_ORYLA_8090 and tr_A0A2D0Q5P0_A0A2D0Q5P0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_H2LM92_H2LM92_ORYLA_8090 and tr_A0A2D0Q6U2_A0A2D0Q6U2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2I3GK91_A0A2I3GK91_NOMLE_61853 and tr_G3RLJ3_G3RLJ3_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R6G7_G1R6G7_NOMLE_61853 and tr_H2P8H9_H2P8H9_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1PD74_G1PD74_MYOLU_59463 and tr_F6QF72_F6QF72_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_H2NRT8_H2NRT8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_F6R3W2_F6R3W2_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_W5PWW5_W5PWW5_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_I3N9D7_I3N9D7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_H0XN25_H0XN25_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and sp_Q6UB99_ANR11_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_F7H0T3_F7H0T3_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_G5API6_G5API6_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_G3UAA2_G3UAA2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_F7HHX0_F7HHX0_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A286ZRF8_A0A286ZRF8_PIG_9823 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_E1BAT5_E1BAT5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_L5JNK4_L5JNK4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A096MZ63_A0A096MZ63_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A091DIB2_A0A091DIB2_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A0D9S2V2_A0A0D9S2V2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A1S3A963_A0A1S3A963_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A1U7TT26_A0A1U7TT26_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A2K5MUS2_A0A2K5MUS2_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A2K6CLH8_A0A2K6CLH8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A2K5XYL5_A0A2K5XYL5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A2R9AHV0_A0A2R9AHV0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A2Y9R1Q1_A0A2Y9R1Q1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A2Y9P8I3_A0A2Y9P8I3_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A2Y9SQC5_A0A2Y9SQC5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1PUP0_G1PUP0_MYOLU_59463 and tr_A0A383ZBQ0_A0A383ZBQ0_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3HWL4_G3HWL4_CRIGR_10029 and tr_H2PRH2_H2PRH2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3HWL4_G3HWL4_CRIGR_10029 and tr_A0A2I3S9H1_A0A2I3S9H1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3HWL4_G3HWL4_CRIGR_10029 and sp_Q96HA7_TONSL_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3HWL4_G3HWL4_CRIGR_10029 and tr_F7G3K0_F7G3K0_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3HWL4_G3HWL4_CRIGR_10029 and tr_G7PDA7_G7PDA7_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3HWL4_G3HWL4_CRIGR_10029 and tr_A0A096NE10_A0A096NE10_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3HWL4_G3HWL4_CRIGR_10029 and tr_A0A0D9R7L8_A0A0D9R7L8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3HWL4_G3HWL4_CRIGR_10029 and tr_A0A2K5MJU8_A0A2K5MJU8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3HWL4_G3HWL4_CRIGR_10029 and tr_A0A2K6CM78_A0A2K6CM78_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3HWL4_G3HWL4_CRIGR_10029 and tr_A0A2K6A5A3_A0A2K6A5A3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3HWL4_G3HWL4_CRIGR_10029 and tr_A0A2R9B4Q7_A0A2R9B4Q7_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2Y830_A0A2I2Y830_GORGO_9595 and tr_A0A2I3SEM0_A0A2I3SEM0_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Y830_A0A2I2Y830_GORGO_9595 and sp_Q99728_BARD1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Y830_A0A2I2Y830_GORGO_9595 and tr_A0A2R9CGG0_A0A2R9CGG0_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2Y830_A0A2I2Y830_GORGO_9595 and tr_A0A2U4BMU3_A0A2U4BMU3_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2I2Y830_A0A2I2Y830_GORGO_9595 and tr_A0A2Y9DL88_A0A2Y9DL88_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2I2Y830_A0A2I2Y830_GORGO_9595 and tr_A0A2Y9MM33_A0A2Y9MM33_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2I2Y830_A0A2I2Y830_GORGO_9595 and tr_A0A2Y9F6B8_A0A2Y9F6B8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2I2Y830_A0A2I2Y830_GORGO_9595 and tr_A0A384AL56_A0A384AL56_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1MST7_G1MST7_MELGA_9103 and tr_U3IZE8_U3IZE8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1MST7_G1MST7_MELGA_9103 and tr_A0A151P7T8_A0A151P7T8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_G1MST7_G1MST7_MELGA_9103 and tr_A0A2I0LLN1_A0A2I0LLN1_COLLI_8932 are exactly identical! WARNING: Sequences tr_G1MST7_G1MST7_MELGA_9103 and tr_A0A3Q0GYK3_A0A3Q0GYK3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G1MST7_G1MST7_MELGA_9103 and tr_A0A1V4KQA8_A0A1V4KQA8_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_F6UI01_F6UI01_MONDO_13616 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_K7G927_K7G927_PELSI_13735 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_G3WB93_G3WB93_SARHA_9305 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_A0A151NU29_A0A151NU29_ALLMI_8496 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_A0A091JE72_A0A091JE72_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_A0A087R9C3_A0A087R9C3_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_A0A093K9Q8_A0A093K9Q8_STRCA_441894 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_A0A0A0AR57_A0A0A0AR57_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_A0A2I0M5P7_A0A2I0M5P7_COLLI_8932 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_A0A093G554_A0A093G554_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_A0A1U8DFU2_A0A1U8DFU2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_A0A1V4JCA4_A0A1V4JCA4_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_A0A226NMZ0_A0A226NMZ0_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1NP48_G1NP48_MELGA_9103 and tr_A0A226PK45_A0A226PK45_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q2M0K4_Q2M0K4_DROPS_46245 and tr_B4GRI2_B4GRI2_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q2M112_Q2M112_DROPS_46245 and tr_B4GQT7_B4GQT7_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2RN92_E2RN92_CANLF_9615 and tr_I3LJX9_I3LJX9_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A2I3TU62_A0A2I3TU62_PANTR_9598 and sp_Q8N7Z5_ANR31_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3TU62_A0A2I3TU62_PANTR_9598 and tr_A0A2R9ATN9_A0A2R9ATN9_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6Q1Y5_F6Q1Y5_ORNAN_9258 and tr_F7ECT5_F7ECT5_MONDO_13616 are exactly identical! WARNING: Sequences tr_F6Q1Y5_F6Q1Y5_ORNAN_9258 and tr_A0A286XYU8_A0A286XYU8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_F6Q1Y5_F6Q1Y5_ORNAN_9258 and tr_G3WN13_G3WN13_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6SBT2_F6SBT2_ORNAN_9258 and tr_G5C060_G5C060_HETGA_10181 are exactly identical! WARNING: Sequences tr_F6SBT2_F6SBT2_ORNAN_9258 and tr_K7FFC0_K7FFC0_PELSI_13735 are exactly identical! WARNING: Sequences tr_F6SBT2_F6SBT2_ORNAN_9258 and tr_A0A091D7L0_A0A091D7L0_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F6SBT2_F6SBT2_ORNAN_9258 and tr_A0A2Y9IRM7_A0A2Y9IRM7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F7CDC2_F7CDC2_MONDO_13616 and tr_G3X3C8_G3X3C8_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7CDC2_F7CDC2_MONDO_13616 and tr_G1M710_G1M710_AILME_9646 are exactly identical! WARNING: Sequences tr_F7CDC2_F7CDC2_MONDO_13616 and tr_M3WLN7_M3WLN7_FELCA_9685 are exactly identical! WARNING: Sequences tr_F7CDC2_F7CDC2_MONDO_13616 and tr_A0A091DCR0_A0A091DCR0_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F7CDC2_F7CDC2_MONDO_13616 and tr_A0A3Q0HAC7_A0A3Q0HAC7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F7CDC2_F7CDC2_MONDO_13616 and tr_A0A218UWQ9_A0A218UWQ9_9PASE_299123 are exactly identical! WARNING: Sequences tr_F7DQV8_F7DQV8_MONDO_13616 and tr_G3W710_G3W710_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5PUZ0_W5PUZ0_SHEEP_9940 and sp_Q0P5G1_TONSL_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PUZ0_W5PUZ0_SHEEP_9940 and tr_L5KJB5_L5KJB5_PTEAL_9402 are exactly identical! WARNING: Sequences tr_W5PUZ0_W5PUZ0_SHEEP_9940 and tr_M3WKL8_M3WKL8_FELCA_9685 are exactly identical! WARNING: Sequences tr_W5QDA6_W5QDA6_SHEEP_9940 and tr_F1MAV4_F1MAV4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_D3ZCH1_D3ZCH1_RAT_10116 and tr_D3ZGR5_D3ZGR5_RAT_10116 are exactly identical! WARNING: Sequences tr_D3ZCH1_D3ZCH1_RAT_10116 and tr_A0A3Q0D2G6_A0A3Q0D2G6_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A3B5QCJ5_A0A3B5QCJ5_XIPMA_8083 and tr_A0A087XIM4_A0A087XIM4_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QVP8_A0A3B5QVP8_XIPMA_8083 and tr_I3KQ69_I3KQ69_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5QVP8_A0A3B5QVP8_XIPMA_8083 and tr_H2T5I0_H2T5I0_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B5QVP8_A0A3B5QVP8_XIPMA_8083 and tr_H3DBL2_H3DBL2_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B5QVP8_A0A3B5QVP8_XIPMA_8083 and tr_G3PWJ6_G3PWJ6_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A3B5QVP8_A0A3B5QVP8_XIPMA_8083 and tr_A0A087X9P3_A0A087X9P3_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QVP8_A0A3B5QVP8_XIPMA_8083 and tr_A0A2I4C6G3_A0A2I4C6G3_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A3B5QVP8_A0A3B5QVP8_XIPMA_8083 and tr_A0A2U9BIJ4_A0A2U9BIJ4_SCOMX_52904 are exactly identical! WARNING: Sequences tr_M3ZJE2_M3ZJE2_XIPMA_8083 and tr_H2TSA4_H2TSA4_TAKRU_31033 are exactly identical! WARNING: Sequences tr_M3ZJE2_M3ZJE2_XIPMA_8083 and tr_H3D6S4_H3D6S4_TETNG_99883 are exactly identical! WARNING: Sequences tr_M3ZJE2_M3ZJE2_XIPMA_8083 and tr_G3Q0P0_G3Q0P0_GASAC_69293 are exactly identical! WARNING: Sequences tr_M3ZJE2_M3ZJE2_XIPMA_8083 and tr_G3SUY2_G3SUY2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3ZJE2_M3ZJE2_XIPMA_8083 and tr_F6UWD2_F6UWD2_XENTR_8364 are exactly identical! WARNING: Sequences tr_M3ZJE2_M3ZJE2_XIPMA_8083 and tr_A0A096LQB1_A0A096LQB1_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZJE2_M3ZJE2_XIPMA_8083 and tr_A0A1S3LTJ3_A0A1S3LTJ3_SALSA_8030 are exactly identical! WARNING: Sequences tr_M3ZJE2_M3ZJE2_XIPMA_8083 and tr_A0A1L8HN28_A0A1L8HN28_XENLA_8355 are exactly identical! WARNING: Sequences tr_M3ZJE2_M3ZJE2_XIPMA_8083 and tr_A0A2I4AQT7_A0A2I4AQT7_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A087ZUZ6_A0A087ZUZ6_APIME_7460 and tr_A0A2A3E7F5_A0A2A3E7F5_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NI06_A0A158NI06_ATTCE_12957 and tr_A0A195AX32_A0A195AX32_9HYME_520822 are exactly identical! WARNING: Sequences tr_I3J4J0_I3J4J0_ORENI_8128 and tr_A0A3B5K5Y5_A0A3B5K5Y5_TAKRU_31033 are exactly identical! WARNING: Sequences tr_I3J4J0_I3J4J0_ORENI_8128 and tr_G3PRZ2_G3PRZ2_GASAC_69293 are exactly identical! WARNING: Sequences tr_I3J4J0_I3J4J0_ORENI_8128 and tr_A0A3B1JVT0_A0A3B1JVT0_ASTMX_7994 are exactly identical! WARNING: Sequences tr_I3J4J0_I3J4J0_ORENI_8128 and tr_A0A2U9BCR8_A0A2U9BCR8_SCOMX_52904 are exactly identical! WARNING: Sequences tr_I3NEX3_I3NEX3_ICTTR_43179 and tr_A0A1S3WHU6_A0A1S3WHU6_ERIEU_9365 are exactly identical! WARNING: Sequences tr_H0V4G9_H0V4G9_CAVPO_10141 and tr_G5BU37_G5BU37_HETGA_10181 are exactly identical! WARNING: Sequences tr_H0V4G9_H0V4G9_CAVPO_10141 and tr_A0A091D9R8_A0A091D9R8_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A158Q1Y0_A0A158Q1Y0_BRUMA_6279 and tr_A0A0N4TWC1_A0A0N4TWC1_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A158Q1Y0_A0A158Q1Y0_BRUMA_6279 and tr_A0A0R3QLR2_A0A0R3QLR2_9BILA_42155 are exactly identical! WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_G7PLD1_G7PLD1_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_L5L2F9_L5L2F9_PTEAL_9402 are exactly identical! WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_A0A096MZC3_A0A096MZC3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_A0A0D9RAF5_A0A0D9RAF5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_A0A2K5NU25_A0A2K5NU25_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_A0A2K6DQ03_A0A2K6DQ03_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6U4Z0_F6U4Z0_MACMU_9544 and tr_A0A2K5YGX9_A0A2K5YGX9_MANLE_9568 are exactly identical! WARNING: Sequences tr_Q7Q6V5_Q7Q6V5_ANOGA_7165 and tr_A0A084WKI1_A0A084WKI1_ANOSI_74873 are exactly identical! WARNING: Sequences tr_G3SLX6_G3SLX6_LOXAF_9785 and tr_M3WD26_M3WD26_FELCA_9685 are exactly identical! WARNING: Sequences tr_H0Z8E1_H0Z8E1_TAEGU_59729 and tr_U3JFR0_U3JFR0_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0Z8E1_H0Z8E1_TAEGU_59729 and tr_A0A091J294_A0A091J294_CALAN_9244 are exactly identical! WARNING: Sequences tr_H0Z8E1_H0Z8E1_TAEGU_59729 and tr_A0A218VCQ5_A0A218VCQ5_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZHU8_H0ZHU8_TAEGU_59729 and tr_U3JV49_U3JV49_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZHU8_H0ZHU8_TAEGU_59729 and tr_A0A093FX55_A0A093FX55_DRYPU_118200 are exactly identical! WARNING: Sequences tr_H0ZHU8_H0ZHU8_TAEGU_59729 and tr_A0A091HQP6_A0A091HQP6_CALAN_9244 are exactly identical! WARNING: Sequences tr_H0ZHU8_H0ZHU8_TAEGU_59729 and tr_A0A218UTT8_A0A218UTT8_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1B8Y4C9_A0A1B8Y4C9_XENTR_8364 and tr_F7DQ36_F7DQ36_XENTR_8364 are exactly identical! WARNING: Sequences tr_F6URR9_F6URR9_XENTR_8364 and tr_A0A1L8HF45_A0A1L8HF45_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7A2Z7_F7A2Z7_XENTR_8364 and tr_A0A1L8GEN1_A0A1L8GEN1_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7A2Z7_F7A2Z7_XENTR_8364 and tr_A0A2I4ASR3_A0A2I4ASR3_9TELE_52670 are exactly identical! WARNING: Sequences tr_B4LGR6_B4LGR6_DROVI_7244 and tr_B4L0Z7_B4L0Z7_DROMO_7230 are exactly identical! WARNING: Sequences tr_Q16EZ1_Q16EZ1_AEDAE_7159 and tr_Q16GN0_Q16GN0_AEDAE_7159 are exactly identical! WARNING: Sequences tr_G1LAW6_G1LAW6_AILME_9646 and tr_A0A384C1W2_A0A384C1W2_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LGD9_G1LGD9_AILME_9646 and tr_A0A384BIC6_A0A384BIC6_URSMA_29073 are exactly identical! WARNING: Sequences tr_B3RVJ8_B3RVJ8_TRIAD_10228 and tr_A0A369SJE8_A0A369SJE8_9METZ_287889 are exactly identical! WARNING: Sequences tr_G8F452_G8F452_MACFA_9541 and tr_A0A2I3LNF3_A0A2I3LNF3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G8F452_G8F452_MACFA_9541 and tr_A0A2K6D3Z7_A0A2K6D3Z7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G8F452_G8F452_MACFA_9541 and tr_A0A2K5ZFE7_A0A2K5ZFE7_MANLE_9568 are exactly identical! WARNING: Sequences sp_A6QR20_SLF1_BOVIN_9913 and tr_F1MM85_F1MM85_BOVIN_9913 are exactly identical! WARNING: Sequences tr_S2KAF3_S2KAF3_MUCC1_1220926 and tr_A0A0C9MLT7_A0A0C9MLT7_9FUNG_91626 are exactly identical! WARNING: Sequences tr_A0A2K6W5C8_A0A2K6W5C8_ONCVO_6282 and tr_A0A182EKF8_A0A182EKF8_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0A1NKR3_A0A0A1NKR3_9FUNG_58291 and tr_A0A0A1PGA0_A0A0A1PGA0_9FUNG_58291 are exactly identical! WARNING: Sequences tr_A0A0A1NKR3_A0A0A1NKR3_9FUNG_58291 and tr_A0A367K1J0_A0A367K1J0_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0A1NKR3_A0A0A1NKR3_9FUNG_58291 and tr_A0A367KCF0_A0A367KCF0_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0A1NLI6_A0A0A1NLI6_9FUNG_58291 and tr_A0A0A1P5J4_A0A0A1P5J4_9FUNG_58291 are exactly identical! WARNING: Sequences tr_A0A0A1NLI6_A0A0A1NLI6_9FUNG_58291 and tr_A0A367JIV5_A0A367JIV5_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0A1NLI6_A0A0A1NLI6_9FUNG_58291 and tr_A0A367KBE4_A0A367KBE4_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A151NER2_A0A151NER2_ALLMI_8496 and tr_A0A1U7RTI3_A0A1U7RTI3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151PHY5_A0A151PHY5_ALLMI_8496 and tr_A0A1U7RSY2_A0A1U7RSY2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1S3GZA8_A0A1S3GZA8_LINUN_7574 and tr_A0A1S3IFL1_A0A1S3IFL1_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3HJF7_A0A1S3HJF7_LINUN_7574 and tr_A0A1S3HUI3_A0A1S3HUI3_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3I0Y6_A0A1S3I0Y6_LINUN_7574 and tr_A0A1S3I268_A0A1S3I268_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3KUE2_A0A1S3KUE2_SALSA_8030 and tr_A0A1S3PTD8_A0A1S3PTD8_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3KUE2_A0A1S3KUE2_SALSA_8030 and tr_A0A060XMM1_A0A060XMM1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3KUE2_A0A1S3KUE2_SALSA_8030 and tr_A0A060XVQ7_A0A060XVQ7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1R1WZD7_A0A1R1WZD7_9FUNG_133412 and tr_A0A1R1YAA1_A0A1R1YAA1_9FUNG_133412 are exactly identical! WARNING: Sequences tr_A0A2D0PL67_A0A2D0PL67_ICTPU_7998 and tr_A0A2D0PLA3_A0A2D0PLA3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PL67_A0A2D0PL67_ICTPU_7998 and tr_A0A2D0PMY1_A0A2D0PMY1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SB47_A0A2D0SB47_ICTPU_7998 and tr_W5UIQ2_W5UIQ2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4CM94_A0A2U4CM94_TURTR_9739 and tr_A0A2Y9M0U1_A0A2Y9M0U1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CM94_A0A2U4CM94_TURTR_9739 and tr_A0A383YVJ9_A0A383YVJ9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3VZ33_A0A2U3VZ33_ODORO_9708 and tr_A0A2U3YS07_A0A2U3YS07_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 362 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6UB99/3_mltree/Q6UB99.raxml.reduced.phy Alignment comprises 1 partitions and 79 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 79 / 79 Gaps: 3.88 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6UB99/3_mltree/Q6UB99.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 956 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 79 / 6320 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -122665.436441] Initial branch length optimization [00:00:02 -100743.554170] Model parameter optimization (eps = 10.000000) [00:00:54 -100274.163275] AUTODETECT spr round 1 (radius: 5) [00:02:38 -66191.766530] AUTODETECT spr round 2 (radius: 10) [00:04:31 -49935.543610] AUTODETECT spr round 3 (radius: 15) [00:06:37 -40144.166611] AUTODETECT spr round 4 (radius: 20) [00:08:57 -36001.263135] AUTODETECT spr round 5 (radius: 25) [00:11:35 -33932.311215] SPR radius for FAST iterations: 25 (autodetect) [00:11:35 -33932.311215] Model parameter optimization (eps = 3.000000) [00:11:53 -33877.362658] FAST spr round 1 (radius: 25) [00:13:55 -29744.505551] FAST spr round 2 (radius: 25) [00:15:32 -29364.986592] FAST spr round 3 (radius: 25) [00:17:00 -29204.839977] FAST spr round 4 (radius: 25) [00:18:26 -29162.149496] FAST spr round 5 (radius: 25) [00:19:50 -29162.029793] FAST spr round 6 (radius: 25) [00:21:15 -29162.015981] Model parameter optimization (eps = 1.000000) [00:21:23 -29161.299958] SLOW spr round 1 (radius: 5) [00:22:57 -29153.232511] SLOW spr round 2 (radius: 5) [00:24:32 -29145.429797] SLOW spr round 3 (radius: 5) [00:26:00 -29145.429332] SLOW spr round 4 (radius: 10) [00:27:37 -29143.954142] SLOW spr round 5 (radius: 5) [00:29:25 -29143.837325] SLOW spr round 6 (radius: 5) [00:31:04 -29143.836841] SLOW spr round 7 (radius: 10) [00:32:41 -29143.524213] SLOW spr round 8 (radius: 5) [00:34:29 -29143.524176] SLOW spr round 9 (radius: 10) [00:36:13 -29142.846571] SLOW spr round 10 (radius: 5) [00:38:01 -29142.788086] SLOW spr round 11 (radius: 10) [00:39:44 -29142.788004] SLOW spr round 12 (radius: 15) [00:41:51 -29142.788004] SLOW spr round 13 (radius: 20) [00:44:32 -29140.000451] SLOW spr round 14 (radius: 5) [00:46:26 -29139.998248] SLOW spr round 15 (radius: 10) [00:48:16 -29138.093324] SLOW spr round 16 (radius: 5) [00:50:02 -29138.093077] SLOW spr round 17 (radius: 10) [00:51:45 -29138.093057] SLOW spr round 18 (radius: 15) [00:53:55 -29138.093056] SLOW spr round 19 (radius: 20) [00:56:41 -29138.093056] SLOW spr round 20 (radius: 25) [01:00:09 -29021.987306] SLOW spr round 21 (radius: 5) [01:02:15 -29020.999650] SLOW spr round 22 (radius: 5) [01:04:08 -29018.090608] SLOW spr round 23 (radius: 5) [01:05:55 -29016.460983] SLOW spr round 24 (radius: 5) [01:07:30 -29016.350772] SLOW spr round 25 (radius: 5) [01:09:04 -29016.350509] SLOW spr round 26 (radius: 10) [01:10:42 -29016.350500] SLOW spr round 27 (radius: 15) [01:12:53 -29016.350500] SLOW spr round 28 (radius: 20) [01:15:39 -29016.350500] SLOW spr round 29 (radius: 25) [01:18:05] [worker #1] ML tree search #2, logLikelihood: -28793.158315 [01:18:58 -29016.350500] Model parameter optimization (eps = 0.100000) [01:19:06] [worker #0] ML tree search #1, logLikelihood: -29015.937917 [01:19:06 -122915.899710] Initial branch length optimization [01:19:09 -101186.210119] Model parameter optimization (eps = 10.000000) [01:19:40 -100865.439347] AUTODETECT spr round 1 (radius: 5) [01:21:29 -66764.246688] AUTODETECT spr round 2 (radius: 10) [01:23:30 -48310.811233] AUTODETECT spr round 3 (radius: 15) [01:25:31 -39497.279159] AUTODETECT spr round 4 (radius: 20) [01:27:52 -35167.659121] AUTODETECT spr round 5 (radius: 25) [01:30:45 -33567.727465] SPR radius for FAST iterations: 25 (autodetect) [01:30:45 -33567.727465] Model parameter optimization (eps = 3.000000) [01:31:09 -33484.691447] FAST spr round 1 (radius: 25) [01:33:11 -29744.502262] FAST spr round 2 (radius: 25) [01:34:58 -28971.509220] FAST spr round 3 (radius: 25) [01:36:30 -28932.063473] FAST spr round 4 (radius: 25) [01:37:59 -28930.505287] FAST spr round 5 (radius: 25) [01:39:23 -28929.957313] FAST spr round 6 (radius: 25) [01:40:51 -28929.956822] Model parameter optimization (eps = 1.000000) [01:41:05 -28926.686440] SLOW spr round 1 (radius: 5) [01:42:44 -28920.806360] SLOW spr round 2 (radius: 5) [01:44:23 -28917.063775] SLOW spr round 3 (radius: 5) [01:46:00 -28917.063077] SLOW spr round 4 (radius: 10) [01:47:42 -28913.396088] SLOW spr round 5 (radius: 5) [01:49:34 -28910.905254] SLOW spr round 6 (radius: 5) [01:51:18 -28908.335574] SLOW spr round 7 (radius: 5) [01:52:55 -28907.718385] SLOW spr round 8 (radius: 5) [01:54:33 -28895.579408] SLOW spr round 9 (radius: 5) [01:56:11 -28895.035228] SLOW spr round 10 (radius: 5) [01:57:48 -28895.034178] SLOW spr round 11 (radius: 10) [01:59:32 -28895.033876] SLOW spr round 12 (radius: 15) [02:01:46 -28894.285765] SLOW spr round 13 (radius: 5) [02:03:47 -28894.284963] SLOW spr round 14 (radius: 10) [02:05:42 -28893.972200] SLOW spr round 15 (radius: 5) [02:07:36 -28893.972145] SLOW spr round 16 (radius: 10) [02:09:24 -28893.972103] SLOW spr round 17 (radius: 15) [02:11:33 -28893.972051] SLOW spr round 18 (radius: 20) [02:14:21 -28893.671429] SLOW spr round 19 (radius: 5) [02:16:17 -28893.671182] SLOW spr round 20 (radius: 10) [02:18:06 -28893.671151] SLOW spr round 21 (radius: 15) [02:20:07 -28893.671145] SLOW spr round 22 (radius: 20) [02:22:55 -28893.671144] SLOW spr round 23 (radius: 25) [02:26:42 -28877.061852] SLOW spr round 24 (radius: 5) [02:28:41 -28876.648676] SLOW spr round 25 (radius: 5) [02:30:28 -28876.648672] SLOW spr round 26 (radius: 10) [02:32:11 -28876.648672] SLOW spr round 27 (radius: 15) [02:34:18 -28876.123452] SLOW spr round 28 (radius: 5) [02:36:15 -28876.123450] SLOW spr round 29 (radius: 10) [02:38:05 -28876.123448] SLOW spr round 30 (radius: 15) [02:40:16 -28876.123446] SLOW spr round 31 (radius: 20) [02:43:18 -28876.123446] SLOW spr round 32 (radius: 25) [02:46:08] [worker #1] ML tree search #4, logLikelihood: -28815.145044 [02:47:20 -28876.123446] Model parameter optimization (eps = 0.100000) [02:47:32] [worker #0] ML tree search #3, logLikelihood: -28875.722208 [02:47:32 -122745.148960] Initial branch length optimization [02:47:35 -100694.086530] Model parameter optimization (eps = 10.000000) [02:48:14 -100330.903704] AUTODETECT spr round 1 (radius: 5) [02:50:03 -68536.548919] AUTODETECT spr round 2 (radius: 10) [02:52:05 -50381.158039] AUTODETECT spr round 3 (radius: 15) [02:54:13 -40806.485548] AUTODETECT spr round 4 (radius: 20) [02:56:26 -35168.619528] AUTODETECT spr round 5 (radius: 25) [02:58:59 -33688.111781] SPR radius for FAST iterations: 25 (autodetect) [02:58:59 -33688.111781] Model parameter optimization (eps = 3.000000) [02:59:22 -33625.968350] FAST spr round 1 (radius: 25) [03:01:26 -30099.749826] FAST spr round 2 (radius: 25) [03:03:18 -29714.325874] FAST spr round 3 (radius: 25) [03:04:59 -29304.376989] FAST spr round 4 (radius: 25) [03:06:41 -29199.908642] FAST spr round 5 (radius: 25) [03:08:19 -29192.990617] FAST spr round 6 (radius: 25) [03:09:52 -29191.066222] FAST spr round 7 (radius: 25) [03:11:20 -29188.809307] FAST spr round 8 (radius: 25) [03:12:46 -29188.806878] Model parameter optimization (eps = 1.000000) [03:12:59 -29185.043930] SLOW spr round 1 (radius: 5) [03:14:36 -29178.857270] SLOW spr round 2 (radius: 5) [03:16:13 -29176.871476] SLOW spr round 3 (radius: 5) [03:17:47 -29176.871225] SLOW spr round 4 (radius: 10) [03:19:26 -29176.871148] SLOW spr round 5 (radius: 15) [03:21:52 -29154.466687] SLOW spr round 6 (radius: 5) [03:23:58 -29142.762590] SLOW spr round 7 (radius: 5) [03:25:58 -29141.461401] SLOW spr round 8 (radius: 5) [03:27:37 -29141.411794] SLOW spr round 9 (radius: 10) [03:29:18 -29141.099095] SLOW spr round 10 (radius: 5) [03:31:09 -29141.099042] SLOW spr round 11 (radius: 10) [03:32:53 -29134.509850] SLOW spr round 12 (radius: 5) [03:34:42 -29133.558051] SLOW spr round 13 (radius: 5) [03:36:20 -29133.557991] SLOW spr round 14 (radius: 10) [03:37:58 -29131.439811] SLOW spr round 15 (radius: 5) [03:39:46 -29131.439760] SLOW spr round 16 (radius: 10) [03:41:28 -29131.439707] SLOW spr round 17 (radius: 15) [03:43:33 -29131.439657] SLOW spr round 18 (radius: 20) [03:46:15 -29129.650906] SLOW spr round 19 (radius: 5) [03:48:10 -29129.650559] SLOW spr round 20 (radius: 10) [03:49:58 -29129.650506] SLOW spr round 21 (radius: 15) [03:52:01 -29129.650455] SLOW spr round 22 (radius: 20) [03:54:42 -29129.650405] SLOW spr round 23 (radius: 25) [03:58:00 -29060.153982] SLOW spr round 24 (radius: 5) [04:00:02 -29002.282472] SLOW spr round 25 (radius: 5) [04:01:51 -28988.029862] SLOW spr round 26 (radius: 5) [04:03:30 -28986.921348] SLOW spr round 27 (radius: 5) [04:05:03 -28986.920179] SLOW spr round 28 (radius: 10) [04:06:39 -28983.562573] SLOW spr round 29 (radius: 5) [04:08:30 -28982.500872] SLOW spr round 30 (radius: 5) [04:10:09 -28982.134296] SLOW spr round 31 (radius: 5) [04:11:44 -28982.134226] SLOW spr round 32 (radius: 10) [04:13:19 -28982.134223] SLOW spr round 33 (radius: 15) [04:15:24 -28980.490749] SLOW spr round 34 (radius: 5) [04:17:15 -28980.490735] SLOW spr round 35 (radius: 10) [04:18:58 -28980.490735] SLOW spr round 36 (radius: 15) [04:20:58 -28980.490735] SLOW spr round 37 (radius: 20) [04:23:35 -28979.727578] SLOW spr round 38 (radius: 5) [04:24:58] [worker #1] ML tree search #6, logLikelihood: -28775.896286 [04:25:28 -28979.720918] SLOW spr round 39 (radius: 10) [04:27:15 -28979.719804] SLOW spr round 40 (radius: 15) [04:29:14 -28979.719605] SLOW spr round 41 (radius: 20) [04:31:48 -28979.719569] SLOW spr round 42 (radius: 25) [04:34:55 -28975.629711] SLOW spr round 43 (radius: 5) [04:36:52 -28975.629102] SLOW spr round 44 (radius: 10) [04:38:45 -28960.401867] SLOW spr round 45 (radius: 5) [04:40:32 -28960.025158] SLOW spr round 46 (radius: 5) [04:42:10 -28960.024640] SLOW spr round 47 (radius: 10) [04:43:47 -28960.024525] SLOW spr round 48 (radius: 15) [04:45:52 -28960.024492] SLOW spr round 49 (radius: 20) [04:48:29 -28960.024483] SLOW spr round 50 (radius: 25) [04:51:39 -28960.024480] Model parameter optimization (eps = 0.100000) [04:51:47] [worker #0] ML tree search #5, logLikelihood: -28959.282718 [04:51:47 -122961.304615] Initial branch length optimization [04:51:50 -100800.109542] Model parameter optimization (eps = 10.000000) [04:52:19 -100473.527778] AUTODETECT spr round 1 (radius: 5) [04:54:01 -68676.312811] AUTODETECT spr round 2 (radius: 10) [04:55:57 -50712.697423] AUTODETECT spr round 3 (radius: 15) [04:58:00 -42572.129420] AUTODETECT spr round 4 (radius: 20) [05:00:14 -37131.804732] AUTODETECT spr round 5 (radius: 25) [05:02:50 -35078.881698] SPR radius for FAST iterations: 25 (autodetect) [05:02:50 -35078.881698] Model parameter optimization (eps = 3.000000) [05:03:10 -35050.442448] FAST spr round 1 (radius: 25) [05:05:14 -29670.241151] FAST spr round 2 (radius: 25) [05:06:52 -29063.767969] FAST spr round 3 (radius: 25) [05:08:22 -28943.824436] FAST spr round 4 (radius: 25) [05:09:46 -28935.938387] FAST spr round 5 (radius: 25) [05:11:10 -28935.881457] Model parameter optimization (eps = 1.000000) [05:11:23 -28925.253170] SLOW spr round 1 (radius: 5) [05:12:56 -28826.934655] SLOW spr round 2 (radius: 5) [05:14:27 -28822.885600] SLOW spr round 3 (radius: 5) [05:16:01 -28822.884639] SLOW spr round 4 (radius: 10) [05:17:39 -28803.309757] SLOW spr round 5 (radius: 5) [05:19:30 -28797.598165] SLOW spr round 6 (radius: 5) [05:21:12 -28797.597924] SLOW spr round 7 (radius: 10) [05:22:53 -28797.454963] SLOW spr round 8 (radius: 5) [05:24:40 -28797.285334] SLOW spr round 9 (radius: 5) [05:26:17 -28797.285322] SLOW spr round 10 (radius: 10) [05:27:52 -28797.285320] SLOW spr round 11 (radius: 15) [05:29:57 -28787.193582] SLOW spr round 12 (radius: 5) [05:31:53 -28779.496574] SLOW spr round 13 (radius: 5) [05:33:34 -28776.242666] SLOW spr round 14 (radius: 5) [05:35:08 -28776.242354] SLOW spr round 15 (radius: 10) [05:36:43 -28776.242334] SLOW spr round 16 (radius: 15) [05:38:46 -28773.994936] SLOW spr round 17 (radius: 5) [05:40:39 -28773.820501] SLOW spr round 18 (radius: 5) [05:42:18 -28773.819881] SLOW spr round 19 (radius: 10) [05:43:53 -28773.819874] SLOW spr round 20 (radius: 15) [05:45:49 -28773.819874] SLOW spr round 21 (radius: 20) [05:48:12 -28772.581853] SLOW spr round 22 (radius: 5) [05:50:04 -28772.581794] SLOW spr round 23 (radius: 10) [05:51:49 -28772.581793] SLOW spr round 24 (radius: 15) [05:53:44 -28772.581792] SLOW spr round 25 (radius: 20) [05:56:08 -28772.581792] SLOW spr round 26 (radius: 25) [05:58:57 -28772.581792] Model parameter optimization (eps = 0.100000) [05:59:06] [worker #1] ML tree search #8, logLikelihood: -28817.651517 [05:59:07] [worker #0] ML tree search #7, logLikelihood: -28772.018467 [05:59:07 -122793.318965] Initial branch length optimization [05:59:10 -100631.690376] Model parameter optimization (eps = 10.000000) [05:59:38 -100278.047532] AUTODETECT spr round 1 (radius: 5) [06:01:20 -66403.427831] AUTODETECT spr round 2 (radius: 10) [06:03:12 -49693.243486] AUTODETECT spr round 3 (radius: 15) [06:05:13 -39920.311840] AUTODETECT spr round 4 (radius: 20) [06:07:44 -35132.755248] AUTODETECT spr round 5 (radius: 25) [06:10:05 -33671.169114] SPR radius for FAST iterations: 25 (autodetect) [06:10:05 -33671.169114] Model parameter optimization (eps = 3.000000) [06:10:21 -33635.859070] FAST spr round 1 (radius: 25) [06:12:16 -29366.743348] FAST spr round 2 (radius: 25) [06:13:56 -29081.774259] FAST spr round 3 (radius: 25) [06:15:25 -28985.084623] FAST spr round 4 (radius: 25) [06:16:49 -28971.274444] FAST spr round 5 (radius: 25) [06:18:10 -28965.176205] FAST spr round 6 (radius: 25) [06:19:29 -28963.413586] FAST spr round 7 (radius: 25) [06:20:47 -28963.413374] Model parameter optimization (eps = 1.000000) [06:20:57 -28961.260772] SLOW spr round 1 (radius: 5) [06:22:26 -28953.575501] SLOW spr round 2 (radius: 5) [06:23:56 -28951.324653] SLOW spr round 3 (radius: 5) [06:25:27 -28951.179432] SLOW spr round 4 (radius: 5) [06:26:58 -28951.179391] SLOW spr round 5 (radius: 10) [06:28:31 -28951.011995] SLOW spr round 6 (radius: 5) [06:30:23 -28946.636163] SLOW spr round 7 (radius: 5) [06:32:06 -28942.646489] SLOW spr round 8 (radius: 5) [06:33:43 -28941.214885] SLOW spr round 9 (radius: 5) [06:35:15 -28941.214854] SLOW spr round 10 (radius: 10) [06:36:51 -28941.214846] SLOW spr round 11 (radius: 15) [06:38:58 -28922.192459] SLOW spr round 12 (radius: 5) [06:40:54 -28919.784556] SLOW spr round 13 (radius: 5) [06:42:37 -28919.784481] SLOW spr round 14 (radius: 10) [06:44:17 -28919.134158] SLOW spr round 15 (radius: 5) [06:46:03 -28919.105190] SLOW spr round 16 (radius: 10) [06:47:43 -28919.104885] SLOW spr round 17 (radius: 15) [06:49:46 -28919.104842] SLOW spr round 18 (radius: 20) [06:52:33 -28912.407686] SLOW spr round 19 (radius: 5) [06:54:28 -28911.722441] SLOW spr round 20 (radius: 5) [06:56:12 -28911.705698] SLOW spr round 21 (radius: 10) [06:57:53 -28907.598835] SLOW spr round 22 (radius: 5) [06:59:40 -28907.170982] SLOW spr round 23 (radius: 5) [07:01:18 -28907.170833] SLOW spr round 24 (radius: 10) [07:02:52 -28906.154046] SLOW spr round 25 (radius: 5) [07:04:41 -28906.153538] SLOW spr round 26 (radius: 10) [07:06:20 -28906.153453] SLOW spr round 27 (radius: 15) [07:08:23 -28904.133953] SLOW spr round 28 (radius: 5) [07:10:20 -28894.284845] SLOW spr round 29 (radius: 5) [07:12:06 -28893.610701] SLOW spr round 30 (radius: 5) [07:13:41 -28893.610637] SLOW spr round 31 (radius: 10) [07:15:17 -28893.610630] SLOW spr round 32 (radius: 15) [07:17:18 -28893.610627] SLOW spr round 33 (radius: 20) [07:19:51 -28893.610626] SLOW spr round 34 (radius: 25) [07:22:57 -28893.610626] Model parameter optimization (eps = 0.100000) [07:23:11] [worker #0] ML tree search #9, logLikelihood: -28893.207494 [07:23:11 -122659.916029] Initial branch length optimization [07:23:14 -100303.954762] Model parameter optimization (eps = 10.000000) [07:23:42 -99951.495331] AUTODETECT spr round 1 (radius: 5) [07:25:25 -66129.119026] AUTODETECT spr round 2 (radius: 10) [07:27:15 -51032.478091] AUTODETECT spr round 3 (radius: 15) [07:29:11 -42545.751790] AUTODETECT spr round 4 (radius: 20) [07:31:19 -37513.415342] AUTODETECT spr round 5 (radius: 25) [07:33:08] [worker #1] ML tree search #10, logLikelihood: -28950.201853 [07:33:45 -36091.949177] SPR radius for FAST iterations: 25 (autodetect) [07:33:45 -36091.949177] Model parameter optimization (eps = 3.000000) [07:34:05 -36071.319874] FAST spr round 1 (radius: 25) [07:36:08 -30893.416033] FAST spr round 2 (radius: 25) [07:37:51 -29413.620094] FAST spr round 3 (radius: 25) [07:39:21 -29264.126792] FAST spr round 4 (radius: 25) [07:40:48 -29250.800107] FAST spr round 5 (radius: 25) [07:42:08 -29250.794614] Model parameter optimization (eps = 1.000000) [07:42:19 -29243.388769] SLOW spr round 1 (radius: 5) [07:43:50 -29235.367344] SLOW spr round 2 (radius: 5) [07:45:21 -29231.348257] SLOW spr round 3 (radius: 5) [07:46:53 -29230.875038] SLOW spr round 4 (radius: 5) [07:48:26 -29230.874348] SLOW spr round 5 (radius: 10) [07:50:02 -29229.030000] SLOW spr round 6 (radius: 5) [07:51:51 -29228.338474] SLOW spr round 7 (radius: 5) [07:53:30 -29228.338382] SLOW spr round 8 (radius: 10) [07:55:08 -29228.248411] SLOW spr round 9 (radius: 15) [07:57:09 -29227.290217] SLOW spr round 10 (radius: 5) [07:59:02 -29227.068141] SLOW spr round 11 (radius: 5) [08:00:43 -29226.946924] SLOW spr round 12 (radius: 5) [08:02:15 -29226.946837] SLOW spr round 13 (radius: 10) [08:03:52 -29226.946768] SLOW spr round 14 (radius: 15) [08:05:54 -29226.946756] SLOW spr round 15 (radius: 20) [08:08:26 -29226.946756] SLOW spr round 16 (radius: 25) [08:11:31 -29226.750522] SLOW spr round 17 (radius: 5) [08:13:26 -29213.220994] SLOW spr round 18 (radius: 5) [08:15:08 -29213.220923] SLOW spr round 19 (radius: 10) [08:16:46 -29213.220840] SLOW spr round 20 (radius: 15) [08:18:45 -29213.220775] SLOW spr round 21 (radius: 20) [08:21:22 -29213.220712] SLOW spr round 22 (radius: 25) [08:24:28 -29213.220650] Model parameter optimization (eps = 0.100000) [08:24:33] [worker #0] ML tree search #11, logLikelihood: -29213.212509 [08:24:33 -123327.233248] Initial branch length optimization [08:24:35 -101174.171347] Model parameter optimization (eps = 10.000000) [08:25:09 -100816.436561] AUTODETECT spr round 1 (radius: 5) [08:26:52 -68780.532086] AUTODETECT spr round 2 (radius: 10) [08:28:46 -51063.329061] AUTODETECT spr round 3 (radius: 15) [08:30:48 -43496.788466] AUTODETECT spr round 4 (radius: 20) [08:33:06 -39103.120715] AUTODETECT spr round 5 (radius: 25) [08:35:50 -35226.120305] SPR radius for FAST iterations: 25 (autodetect) [08:35:50 -35226.120305] Model parameter optimization (eps = 3.000000) [08:36:09 -35192.381760] FAST spr round 1 (radius: 25) [08:37:25] [worker #1] ML tree search #12, logLikelihood: -28776.386164 [08:38:07 -29715.118254] FAST spr round 2 (radius: 25) [08:39:48 -29282.036524] FAST spr round 3 (radius: 25) [08:41:19 -29071.898032] FAST spr round 4 (radius: 25) [08:42:47 -29065.114873] FAST spr round 5 (radius: 25) [08:44:14 -29062.155564] FAST spr round 6 (radius: 25) [08:45:41 -29060.119475] FAST spr round 7 (radius: 25) [08:47:08 -29060.118414] Model parameter optimization (eps = 1.000000) [08:47:24 -29057.945400] SLOW spr round 1 (radius: 5) [08:49:00 -29055.945776] SLOW spr round 2 (radius: 5) [08:50:35 -29054.067130] SLOW spr round 3 (radius: 5) [08:52:12 -29050.808039] SLOW spr round 4 (radius: 5) [08:53:49 -29049.920419] SLOW spr round 5 (radius: 5) [08:55:27 -29048.209154] SLOW spr round 6 (radius: 5) [08:57:02 -29048.208258] SLOW spr round 7 (radius: 10) [08:58:46 -29030.267709] SLOW spr round 8 (radius: 5) [09:00:41 -29027.704648] SLOW spr round 9 (radius: 5) [09:02:29 -29027.704308] SLOW spr round 10 (radius: 10) [09:04:10 -29027.219010] SLOW spr round 11 (radius: 5) [09:06:05 -29027.218957] SLOW spr round 12 (radius: 10) [09:07:52 -29020.333190] SLOW spr round 13 (radius: 5) [09:09:46 -29018.375448] SLOW spr round 14 (radius: 5) [09:11:34 -29013.986480] SLOW spr round 15 (radius: 5) [09:13:14 -29011.888711] SLOW spr round 16 (radius: 5) [09:14:53 -29008.938387] SLOW spr round 17 (radius: 5) [09:16:26 -29008.938116] SLOW spr round 18 (radius: 10) [09:18:03 -29008.938108] SLOW spr round 19 (radius: 15) [09:20:10 -29008.775321] SLOW spr round 20 (radius: 5) [09:22:05 -29008.775318] SLOW spr round 21 (radius: 10) [09:23:53 -29008.625498] SLOW spr round 22 (radius: 5) [09:25:41 -29008.625498] SLOW spr round 23 (radius: 10) [09:27:24 -29008.625498] SLOW spr round 24 (radius: 15) [09:29:27 -29008.625498] SLOW spr round 25 (radius: 20) [09:32:03 -29008.625498] SLOW spr round 26 (radius: 25) [09:35:01 -29007.891481] SLOW spr round 27 (radius: 5) [09:36:58 -29007.888977] SLOW spr round 28 (radius: 10) [09:38:46 -29007.888943] SLOW spr round 29 (radius: 15) [09:40:50 -29007.888942] SLOW spr round 30 (radius: 20) [09:43:26 -29007.888942] SLOW spr round 31 (radius: 25) [09:46:23 -29007.888942] Model parameter optimization (eps = 0.100000) [09:46:31] [worker #0] ML tree search #13, logLikelihood: -29007.364144 [09:46:31 -122693.482481] Initial branch length optimization [09:46:34 -100529.247691] Model parameter optimization (eps = 10.000000) [09:47:03 -100149.700490] AUTODETECT spr round 1 (radius: 5) [09:48:48 -68050.955615] AUTODETECT spr round 2 (radius: 10) [09:50:16] [worker #1] ML tree search #14, logLikelihood: -28944.882076 [09:50:42 -49531.811969] AUTODETECT spr round 3 (radius: 15) [09:52:38 -41477.984265] AUTODETECT spr round 4 (radius: 20) [09:54:53 -37809.225327] AUTODETECT spr round 5 (radius: 25) [09:57:41 -34521.499849] SPR radius for FAST iterations: 25 (autodetect) [09:57:41 -34521.499849] Model parameter optimization (eps = 3.000000) [09:57:59 -34477.532156] FAST spr round 1 (radius: 25) [10:00:02 -29338.407692] FAST spr round 2 (radius: 25) [10:01:44 -28921.077493] FAST spr round 3 (radius: 25) [10:03:14 -28865.236270] FAST spr round 4 (radius: 25) [10:04:39 -28842.928239] FAST spr round 5 (radius: 25) [10:06:01 -28822.518476] FAST spr round 6 (radius: 25) [10:07:22 -28822.480290] Model parameter optimization (eps = 1.000000) [10:07:30 -28820.836750] SLOW spr round 1 (radius: 5) [10:09:03 -28812.826588] SLOW spr round 2 (radius: 5) [10:10:37 -28806.159147] SLOW spr round 3 (radius: 5) [10:12:11 -28804.989617] SLOW spr round 4 (radius: 5) [10:13:50 -28804.834939] SLOW spr round 5 (radius: 5) [10:15:28 -28804.834807] SLOW spr round 6 (radius: 10) [10:17:09 -28804.834773] SLOW spr round 7 (radius: 15) [10:19:20 -28797.187623] SLOW spr round 8 (radius: 5) [10:21:20 -28796.075110] SLOW spr round 9 (radius: 5) [10:23:07 -28795.575462] SLOW spr round 10 (radius: 5) [10:24:47 -28795.575337] SLOW spr round 11 (radius: 10) [10:26:26 -28795.427257] SLOW spr round 12 (radius: 5) [10:28:14 -28795.262745] SLOW spr round 13 (radius: 5) [10:29:53 -28795.262742] SLOW spr round 14 (radius: 10) [10:31:30 -28795.262732] SLOW spr round 15 (radius: 15) [10:31:36] [worker #1] ML tree search #16, logLikelihood: -28957.158896 [10:33:35 -28791.498937] SLOW spr round 16 (radius: 5) [10:35:29 -28791.498639] SLOW spr round 17 (radius: 10) [10:37:16 -28791.498600] SLOW spr round 18 (radius: 15) [10:39:16 -28791.498590] SLOW spr round 19 (radius: 20) [10:41:55 -28775.973776] SLOW spr round 20 (radius: 5) [10:43:53 -28775.973774] SLOW spr round 21 (radius: 10) [10:45:42 -28775.973763] SLOW spr round 22 (radius: 15) [10:47:40 -28775.973757] SLOW spr round 23 (radius: 20) [10:50:16 -28775.973757] SLOW spr round 24 (radius: 25) [10:53:26 -28772.564289] SLOW spr round 25 (radius: 5) [10:55:32 -28772.564131] SLOW spr round 26 (radius: 10) [10:57:37 -28772.564124] SLOW spr round 27 (radius: 15) [10:59:54 -28772.564120] SLOW spr round 28 (radius: 20) [11:02:31 -28772.564118] SLOW spr round 29 (radius: 25) [11:05:42 -28772.564117] Model parameter optimization (eps = 0.100000) [11:05:51] [worker #0] ML tree search #15, logLikelihood: -28770.729925 [11:05:51 -122133.037041] Initial branch length optimization [11:05:54 -100106.921966] Model parameter optimization (eps = 10.000000) [11:06:27 -99683.565974] AUTODETECT spr round 1 (radius: 5) [11:08:19 -66118.323295] AUTODETECT spr round 2 (radius: 10) [11:10:19 -49456.943018] AUTODETECT spr round 3 (radius: 15) [11:12:29 -38441.195652] AUTODETECT spr round 4 (radius: 20) [11:14:48 -34602.597346] AUTODETECT spr round 5 (radius: 25) [11:17:34 -33528.264087] SPR radius for FAST iterations: 25 (autodetect) [11:17:34 -33528.264087] Model parameter optimization (eps = 3.000000) [11:17:59 -33462.740182] FAST spr round 1 (radius: 25) [11:20:04 -29437.110079] FAST spr round 2 (radius: 25) [11:21:49 -29028.001525] FAST spr round 3 (radius: 25) [11:23:23 -28997.882309] FAST spr round 4 (radius: 25) [11:24:49 -28986.468185] FAST spr round 5 (radius: 25) [11:26:09 -28984.624529] FAST spr round 6 (radius: 25) [11:27:27 -28983.433073] FAST spr round 7 (radius: 25) [11:28:46 -28983.432387] Model parameter optimization (eps = 1.000000) [11:28:58 -28982.154571] SLOW spr round 1 (radius: 5) [11:30:28 -28881.190920] SLOW spr round 2 (radius: 5) [11:30:32] [worker #1] ML tree search #18, logLikelihood: -29028.112957 [11:31:57 -28881.085068] SLOW spr round 3 (radius: 5) [11:33:24 -28881.084876] SLOW spr round 4 (radius: 10) [11:34:57 -28879.159710] SLOW spr round 5 (radius: 5) [11:36:44 -28870.808569] SLOW spr round 6 (radius: 5) [11:38:20 -28869.782636] SLOW spr round 7 (radius: 5) [11:39:49 -28869.782592] SLOW spr round 8 (radius: 10) [11:41:21 -28869.782553] SLOW spr round 9 (radius: 15) [11:43:22 -28866.458519] SLOW spr round 10 (radius: 5) [11:45:11 -28866.457233] SLOW spr round 11 (radius: 10) [11:46:53 -28865.796689] SLOW spr round 12 (radius: 5) [11:48:35 -28865.542892] SLOW spr round 13 (radius: 5) [11:50:09 -28865.278522] SLOW spr round 14 (radius: 5) [11:51:38 -28865.251814] SLOW spr round 15 (radius: 10) [11:53:09 -28865.251798] SLOW spr round 16 (radius: 15) [11:55:10 -28865.251796] SLOW spr round 17 (radius: 20) [11:57:50 -28865.251796] SLOW spr round 18 (radius: 25) [12:01:00 -28862.125663] SLOW spr round 19 (radius: 5) [12:02:52 -28862.064937] SLOW spr round 20 (radius: 10) [12:04:37 -28862.064867] SLOW spr round 21 (radius: 15) [12:06:32 -28861.389269] SLOW spr round 22 (radius: 5) [12:08:23 -28861.389125] SLOW spr round 23 (radius: 10) [12:10:04 -28861.389118] SLOW spr round 24 (radius: 15) [12:12:01 -28861.389117] SLOW spr round 25 (radius: 20) [12:14:35 -28861.389117] SLOW spr round 26 (radius: 25) [12:17:31 -28861.389117] Model parameter optimization (eps = 0.100000) [12:17:35] [worker #0] ML tree search #17, logLikelihood: -28861.350746 [12:17:35 -123321.172480] Initial branch length optimization [12:17:38 -101335.056042] Model parameter optimization (eps = 10.000000) [12:18:11 -100986.625766] AUTODETECT spr round 1 (radius: 5) [12:19:56 -68836.453470] AUTODETECT spr round 2 (radius: 10) [12:21:51 -50557.803844] AUTODETECT spr round 3 (radius: 15) [12:23:49 -41287.880442] AUTODETECT spr round 4 (radius: 20) [12:25:54 -36839.082897] AUTODETECT spr round 5 (radius: 25) [12:28:24 -34629.818576] SPR radius for FAST iterations: 25 (autodetect) [12:28:24 -34629.818576] Model parameter optimization (eps = 3.000000) [12:28:51 -34564.288698] FAST spr round 1 (radius: 25) [12:30:53 -30505.657732] FAST spr round 2 (radius: 25) [12:32:36 -29792.330969] FAST spr round 3 (radius: 25) [12:34:11 -29457.944426] FAST spr round 4 (radius: 25) [12:35:42 -29142.631125] FAST spr round 5 (radius: 25) [12:37:08 -29126.422463] FAST spr round 6 (radius: 25) [12:38:32 -29124.399693] FAST spr round 7 (radius: 25) [12:39:57 -29124.399231] Model parameter optimization (eps = 1.000000) [12:40:08 -29121.691168] SLOW spr round 1 (radius: 5) [12:41:43 -28965.140488] SLOW spr round 2 (radius: 5) [12:43:19 -28962.309812] SLOW spr round 3 (radius: 5) [12:44:54 -28961.091562] SLOW spr round 4 (radius: 5) [12:46:22] [worker #1] ML tree search #20, logLikelihood: -28779.626041 [12:46:30 -28959.198624] SLOW spr round 5 (radius: 5) [12:48:03 -28959.197322] SLOW spr round 6 (radius: 10) [12:49:40 -28959.196904] SLOW spr round 7 (radius: 15) [12:51:51 -28958.240900] SLOW spr round 8 (radius: 5) [12:53:49 -28957.642805] SLOW spr round 9 (radius: 5) [12:55:33 -28956.908689] SLOW spr round 10 (radius: 5) [12:57:10 -28956.908553] SLOW spr round 11 (radius: 10) [12:58:49 -28955.334721] SLOW spr round 12 (radius: 5) [13:00:41 -28949.496673] SLOW spr round 13 (radius: 5) [13:02:22 -28949.496514] SLOW spr round 14 (radius: 10) [13:04:01 -28948.924782] SLOW spr round 15 (radius: 5) [13:05:52 -28948.924295] SLOW spr round 16 (radius: 10) [13:07:38 -28948.923802] SLOW spr round 17 (radius: 15) [13:09:49 -28948.923295] SLOW spr round 18 (radius: 20) [13:12:49 -28930.008457] SLOW spr round 19 (radius: 5) [13:14:49 -28929.497690] SLOW spr round 20 (radius: 5) [13:16:37 -28929.497316] SLOW spr round 21 (radius: 10) [13:18:20 -28929.150933] SLOW spr round 22 (radius: 5) [13:20:11 -28928.904368] SLOW spr round 23 (radius: 5) [13:21:52 -28928.904123] SLOW spr round 24 (radius: 10) [13:23:30 -28928.904102] SLOW spr round 25 (radius: 15) [13:25:44 -28928.904100] SLOW spr round 26 (radius: 20) [13:28:39 -28928.904100] SLOW spr round 27 (radius: 25) [13:32:11 -28928.365790] SLOW spr round 28 (radius: 5) [13:34:09 -28928.365789] SLOW spr round 29 (radius: 10) [13:36:03 -28926.704126] SLOW spr round 30 (radius: 5) [13:37:53 -28926.703708] SLOW spr round 31 (radius: 10) [13:39:36 -28926.703699] SLOW spr round 32 (radius: 15) [13:41:47 -28926.703699] SLOW spr round 33 (radius: 20) [13:44:45 -28926.703699] SLOW spr round 34 (radius: 25) [13:48:22 -28926.703699] Model parameter optimization (eps = 0.100000) [13:48:32] [worker #0] ML tree search #19, logLikelihood: -28926.555080 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.177090,0.429762) (0.277608,0.497005) (0.330136,0.938584) (0.215166,2.212525) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -28770.729925 AIC score: 61371.459849 / AICc score: 7399651.459849 / BIC score: 65908.952487 Free parameters (model + branch lengths): 1915 WARNING: Number of free parameters (K=1915) is larger than alignment size (n=79). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6UB99/3_mltree/Q6UB99.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6UB99/3_mltree/Q6UB99.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6UB99/3_mltree/Q6UB99.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6UB99/3_mltree/Q6UB99.raxml.log Analysis started: 08-Jul-2021 00:20:31 / finished: 08-Jul-2021 14:09:03 Elapsed time: 49712.665 seconds Consumed energy: 2826.215 Wh (= 14 km in an electric car, or 71 km with an e-scooter!)