RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 01-Jul-2021 00:43:04 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6R6M4/2_msa/Q6R6M4_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6R6M4/3_mltree/Q6R6M4 --seed 2 --threads 5 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6R6M4/2_msa/Q6R6M4_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 259 sites WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_G1P126_G1P126_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_G1SM95_G1SM95_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_E2RHU7_E2RHU7_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_F6YEW5_F6YEW5_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_W5NUP8_W5NUP8_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_A0A287CYA0_A0A287CYA0_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and sp_E1B9W9_UBP42_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_L5L1D0_L5L1D0_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_A0A1S2ZVA3_A0A1S2ZVA3_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_A0A1S3FSM0_A0A1S3FSM0_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_A0A2U3VHD3_A0A2U3VHD3_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_A0A2Y9G0K0_A0A2Y9G0K0_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_A0A2Y9JAX8_A0A2Y9JAX8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YYR4_M3YYR4_MUSPF_9669 and tr_A0A384CNZ4_A0A384CNZ4_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1QK88_G1QK88_NOMLE_61853 and tr_G3RH78_G3RH78_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QK88_G1QK88_NOMLE_61853 and tr_H2PLF4_H2PLF4_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QK88_G1QK88_NOMLE_61853 and tr_A0A2I3RP02_A0A2I3RP02_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QK88_G1QK88_NOMLE_61853 and sp_Q9H9J4_UBP42_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QK88_G1QK88_NOMLE_61853 and tr_F7EGJ9_F7EGJ9_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QK88_G1QK88_NOMLE_61853 and tr_A0A096N817_A0A096N817_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QK88_G1QK88_NOMLE_61853 and tr_A0A0D9RYQ6_A0A0D9RYQ6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QK88_G1QK88_NOMLE_61853 and tr_A0A2K5MZY7_A0A2K5MZY7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QK88_G1QK88_NOMLE_61853 and tr_A0A2K6D1T0_A0A2K6D1T0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QK88_G1QK88_NOMLE_61853 and tr_A0A2R9A8W9_A0A2R9A8W9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3H3E7_G3H3E7_CRIGR_10029 and tr_A0A3Q0CPT5_A0A3Q0CPT5_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3RHX2_G3RHX2_GORGO_9595 and tr_K7ALA5_K7ALA5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RHX2_G3RHX2_GORGO_9595 and sp_Q9P275_UBP36_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RHX2_G3RHX2_GORGO_9595 and tr_A0A2R9A6E3_A0A2R9A6E3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8Y212_A0A2J8Y212_PONAB_9601 and tr_H9EXL0_H9EXL0_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2J8Y212_A0A2J8Y212_PONAB_9601 and tr_A0A096NT88_A0A096NT88_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2J8Y212_A0A2J8Y212_PONAB_9601 and tr_A0A0D9S483_A0A0D9S483_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2J8Y212_A0A2J8Y212_PONAB_9601 and tr_A0A2K5NX51_A0A2K5NX51_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2J8Y212_A0A2J8Y212_PONAB_9601 and tr_A0A2K6CGC7_A0A2K6CGC7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2J8Y212_A0A2J8Y212_PONAB_9601 and tr_A0A2K6AH76_A0A2K6AH76_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6RHR0_F6RHR0_MONDO_13616 and tr_G3WX67_G3WX67_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6Z9K0_F6Z9K0_MONDO_13616 and tr_G3WIV2_G3WIV2_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A3B5R4B0_A0A3B5R4B0_XIPMA_8083 and tr_A0A096LSL6_A0A096LSL6_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2TV46_H2TV46_TAKRU_31033 and tr_H3CWM9_H3CWM9_TETNG_99883 are exactly identical! WARNING: Sequences tr_H0VPD4_H0VPD4_CAVPO_10141 and tr_A0A091D2V2_A0A091D2V2_FUKDA_885580 are exactly identical! WARNING: Sequences sp_C9JLJ4_U17LD_HUMAN_9606 and sp_D6RBQ6_U17LH_HUMAN_9606 are exactly identical! WARNING: Sequences sp_C9JPN9_UL17C_HUMAN_9606 and sp_D6R901_U17LL_HUMAN_9606 are exactly identical! WARNING: Sequences sp_C9JVI0_U17LB_HUMAN_9606 and sp_D6R9N7_U17LI_HUMAN_9606 are exactly identical! WARNING: Sequences sp_C9JVI0_U17LB_HUMAN_9606 and sp_D6RCP7_U17LJ_HUMAN_9606 are exactly identical! WARNING: Sequences sp_D6RA61_U17LM_HUMAN_9606 and sp_Q6QN14_U17L6_HUMAN_9606 are exactly identical! WARNING: Sequences sp_D6RJB6_U17LK_HUMAN_9606 and sp_Q0WX57_U17LO_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A0E0G470_A0A0E0G470_ORYNI_4536 and tr_B8AEX1_B8AEX1_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0G470_A0A0E0G470_ORYNI_4536 and tr_I1NYX5_I1NYX5_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0G470_A0A0E0G470_ORYNI_4536 and tr_A0A0E0NCB1_A0A0E0NCB1_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0G470_A0A0E0G470_ORYNI_4536 and tr_A0A0D3F2Z6_A0A0D3F2Z6_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0G470_A0A0E0G470_ORYNI_4536 and tr_A0A0D9YPT2_A0A0D9YPT2_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0G470_A0A0E0G470_ORYNI_4536 and tr_Q0E2F9_Q0E2F9_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0HLU9_A0A0E0HLU9_ORYNI_4536 and tr_B8B3I9_B8B3I9_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0HLU9_A0A0E0HLU9_ORYNI_4536 and tr_I1Q034_I1Q034_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0HLU9_A0A0E0HLU9_ORYNI_4536 and tr_A0A0E0DY01_A0A0E0DY01_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0HLU9_A0A0E0HLU9_ORYNI_4536 and tr_A0A0E0PUD1_A0A0E0PUD1_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0HLU9_A0A0E0HLU9_ORYNI_4536 and tr_A0A0E0A5Y5_A0A0E0A5Y5_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0HLU9_A0A0E0HLU9_ORYNI_4536 and tr_A0A0E0L8P5_A0A0E0L8P5_ORYPU_4537 are exactly identical! WARNING: Sequences tr_A0A0E0HLU9_A0A0E0HLU9_ORYNI_4536 and tr_A0A0P0WT89_A0A0P0WT89_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0IDE5_A0A0E0IDE5_ORYNI_4536 and tr_I1QJH5_I1QJH5_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0IDE5_A0A0E0IDE5_ORYNI_4536 and tr_A0A0E0QKA9_A0A0E0QKA9_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0IDE5_A0A0E0IDE5_ORYNI_4536 and tr_A0A0D3H1D6_A0A0D3H1D6_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0IDE5_A0A0E0IDE5_ORYNI_4536 and tr_A0A0E0AWM8_A0A0E0AWM8_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0IDE5_A0A0E0IDE5_ORYNI_4536 and tr_Q6ZJC2_Q6ZJC2_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A1D5QFX6_A0A1D5QFX6_MACMU_9544 and tr_A0A1D5QSN3_A0A1D5QSN3_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A1D5QFX6_A0A1D5QFX6_MACMU_9544 and tr_A0A1D5R652_A0A1D5R652_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A1D5QFX6_A0A1D5QFX6_MACMU_9544 and tr_F6QBN6_F6QBN6_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A1D5QFX6_A0A1D5QFX6_MACMU_9544 and tr_H9H5K3_H9H5K3_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2K1WU33_A0A2K1WU33_POPTR_3694 and tr_A0A2K1WU49_A0A2K1WU49_POPTR_3694 are exactly identical! WARNING: Sequences tr_A2YFR5_A2YFR5_ORYSI_39946 and tr_A0A0E0E4K6_A0A0E0E4K6_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A2YFR5_A2YFR5_ORYSI_39946 and tr_A0A0D3GJE7_A0A0D3GJE7_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A2YFR5_A2YFR5_ORYSI_39946 and tr_A0A0E0ACP6_A0A0E0ACP6_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A2YFR5_A2YFR5_ORYSI_39946 and tr_Q0DAG6_Q0DAG6_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B8AZU2_B8AZU2_ORYSI_39946 and tr_I1QKR8_I1QKR8_ORYGL_4538 are exactly identical! WARNING: Sequences tr_B8AZU2_B8AZU2_ORYSI_39946 and tr_A0A0D3G9M5_A0A0D3G9M5_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_F4PE09_F4PE09_BATDJ_684364 and tr_A0A177WI39_A0A177WI39_BATDE_403673 are exactly identical! WARNING: Sequences tr_I1P547_I1P547_ORYGL_4538 and tr_A0A0E0NM39_A0A0E0NM39_ORYRU_4529 are exactly identical! WARNING: Sequences tr_I1P547_I1P547_ORYGL_4538 and tr_A0A0D3FBK1_A0A0D3FBK1_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1P547_I1P547_ORYGL_4538 and tr_A0A0D9YZL6_A0A0D9YZL6_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_H0ZEU5_H0ZEU5_TAEGU_59729 and tr_U3KHT7_U3KHT7_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZEU5_H0ZEU5_TAEGU_59729 and tr_A0A091FBE5_A0A091FBE5_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZEU5_H0ZEU5_TAEGU_59729 and tr_A0A093SP50_A0A093SP50_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZEU5_H0ZEU5_TAEGU_59729 and tr_A0A218V8A6_A0A218V8A6_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A286ZPC1_A0A286ZPC1_PIG_9823 and tr_I3LKE8_I3LKE8_PIG_9823 are exactly identical! WARNING: Sequences tr_B3RPT1_B3RPT1_TRIAD_10228 and tr_A0A369SEF8_A0A369SEF8_9METZ_287889 are exactly identical! WARNING: Sequences tr_M4DV57_M4DV57_BRARP_51351 and tr_A0A078H289_A0A078H289_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4EB44_M4EB44_BRARP_51351 and tr_A0A078JF74_A0A078JF74_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4EB44_M4EB44_BRARP_51351 and tr_V4MTG6_V4MTG6_EUTSA_72664 are exactly identical! WARNING: Sequences tr_M4EB44_M4EB44_BRARP_51351 and tr_A0A0D3CAY3_A0A0D3CAY3_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4EEX9_M4EEX9_BRARP_51351 and tr_A0A0D3CK94_A0A0D3CK94_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4ETE9_M4ETE9_BRARP_51351 and tr_A0A078G199_A0A078G199_BRANA_3708 are exactly identical! WARNING: Sequences tr_M7Z4N7_M7Z4N7_TRIUA_4572 and tr_A0A3B6RJ72_A0A3B6RJ72_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M7ZAL0_M7ZAL0_TRIUA_4572 and tr_A0A3B6RND4_A0A3B6RND4_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M7ZAL0_M7ZAL0_TRIUA_4572 and tr_A0A3B6TR31_A0A3B6TR31_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M8A3R4_M8A3R4_TRIUA_4572 and tr_A0A3B6PNB1_A0A3B6PNB1_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M8A3R4_M8A3R4_TRIUA_4572 and tr_A0A3B6QGX2_A0A3B6QGX2_WHEAT_4565 are exactly identical! WARNING: Sequences tr_T1L905_T1L905_TRIUA_4572 and tr_A0A3B6NVL4_A0A3B6NVL4_WHEAT_4565 are exactly identical! WARNING: Sequences tr_V2XR93_V2XR93_MONRO_1381753 and tr_A0A0W0GAQ5_A0A0W0GAQ5_9AGAR_221103 are exactly identical! WARNING: Sequences tr_A0A067DCI7_A0A067DCI7_CITSI_2711 and tr_V4S2V2_V4S2V2_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067DCI7_A0A067DCI7_CITSI_2711 and tr_A0A2H5PZQ8_A0A2H5PZQ8_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067E5X4_A0A067E5X4_CITSI_2711 and tr_A0A2H5PU41_A0A2H5PU41_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067E5X4_A0A067E5X4_CITSI_2711 and tr_A0A2H5PU58_A0A2H5PU58_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067EWB3_A0A067EWB3_CITSI_2711 and tr_V4U207_V4U207_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A2I3M2Z1_A0A2I3M2Z1_PAPAN_9555 and tr_A0A2I3MCF0_A0A2I3MCF0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3M2Z1_A0A2I3M2Z1_PAPAN_9555 and tr_A0A2I3NF51_A0A2I3NF51_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A0D2RBZ9_A0A0D2RBZ9_GOSRA_29730 and tr_A0A1U8JTB7_A0A1U8JTB7_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2RUQ2_A0A0D2RUQ2_GOSRA_29730 and tr_A0A1U8JMK2_A0A1U8JMK2_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2S7U9_A0A0D2S7U9_GOSRA_29730 and tr_A0A1U8MTR6_A0A1U8MTR6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2U8C9_A0A0D2U8C9_GOSRA_29730 and tr_A0A1U8N0C2_A0A1U8N0C2_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A151N1K6_A0A151N1K6_ALLMI_8496 and tr_A0A1U8DCT3_A0A1U8DCT3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091JJ38_A0A091JJ38_EGRGA_188379 and tr_A0A091V8Z2_A0A091V8Z2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JJ38_A0A091JJ38_EGRGA_188379 and tr_A0A087RFS6_A0A087RFS6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JJ38_A0A091JJ38_EGRGA_188379 and tr_A0A091GC45_A0A091GC45_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0V1DGS7_A0A0V1DGS7_TRIBR_45882 and tr_A0A0V0UXV3_A0A0V0UXV3_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DGS7_A0A0V1DGS7_TRIBR_45882 and tr_A0A0V1A5U1_A0A0V1A5U1_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1DGS7_A0A0V1DGS7_TRIBR_45882 and tr_A0A0V1P0B6_A0A0V1P0B6_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1DGS7_A0A0V1DGS7_TRIBR_45882 and tr_A0A0V0U1S9_A0A0V0U1S9_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1MP16_A0A0V1MP16_9BILA_268474 and tr_A0A0V1HFV5_A0A0V1HFV5_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3X2R2_A0A1S3X2R2_TOBAC_4097 and tr_A0A1S4BFN6_A0A1S4BFN6_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S3X2R2_A0A1S3X2R2_TOBAC_4097 and tr_A0A1U7WUW4_A0A1U7WUW4_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3Z1S6_A0A1S3Z1S6_TOBAC_4097 and tr_A0A1U7WC27_A0A1U7WC27_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3ZT29_A0A1S3ZT29_TOBAC_4097 and tr_A0A1U7W257_A0A1U7W257_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4CLX9_A0A1S4CLX9_TOBAC_4097 and tr_A0A314L583_A0A314L583_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4CLX9_A0A1S4CLX9_TOBAC_4097 and tr_A0A1U7V562_A0A1U7V562_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3Q733_A0A1S3Q733_SALSA_8030 and tr_A0A060X5E0_A0A060X5E0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3S0X9_A0A1S3S0X9_SALSA_8030 and tr_A0A2U9CQX1_A0A2U9CQX1_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A1S3U892_A0A1S3U892_VIGRR_3916 and tr_A0A3Q0EZL5_A0A3Q0EZL5_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A1U8J545_A0A1U8J545_GOSHI_3635 and tr_A0A1U8J5W3_A0A1U8J5W3_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A226MLW9_A0A226MLW9_CALSU_9009 and tr_A0A226PTH7_A0A226PTH7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0SQ21_A0A2D0SQ21_ICTPU_7998 and tr_W5UDA6_W5UDA6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1U8EZL0_A0A1U8EZL0_CAPAN_4072 and tr_A0A2G3C292_A0A2G3C292_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A1U8HH33_A0A1U8HH33_CAPAN_4072 and tr_A0A2G3BXG1_A0A2G3BXG1_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G2YAL7_A0A2G2YAL7_CAPAN_4072 and tr_A0A2G3B4W9_A0A2G3B4W9_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2N5S3Q2_A0A2N5S3Q2_9BASI_200324 and tr_A0A2N5VWQ6_A0A2N5VWQ6_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A2U4AZ82_A0A2U4AZ82_TURTR_9739 and tr_A0A2Y9P8N5_A0A2Y9P8N5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BLT3_A0A2U4BLT3_TURTR_9739 and tr_A0A2Y9PPB4_A0A2Y9PPB4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BLT3_A0A2U4BLT3_TURTR_9739 and tr_A0A384AET0_A0A384AET0_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9SL61_A0A2Y9SL61_PHYCD_9755 and tr_A0A384AIC1_A0A384AIC1_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 137 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6R6M4/3_mltree/Q6R6M4.raxml.reduced.phy Alignment comprises 1 partitions and 259 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 259 / 259 Gaps: 1.24 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6R6M4/3_mltree/Q6R6M4.raxml.rba Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 259 / 20720 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -414014.197191] Initial branch length optimization [00:00:06 -353408.895196] Model parameter optimization (eps = 10.000000) [00:01:01 -352686.419262] AUTODETECT spr round 1 (radius: 5) [00:04:47 -233099.457076] AUTODETECT spr round 2 (radius: 10) [00:08:32 -178665.883171] AUTODETECT spr round 3 (radius: 15) [00:12:45 -136329.652771] AUTODETECT spr round 4 (radius: 20) [00:17:03 -120139.220022] AUTODETECT spr round 5 (radius: 25) [00:21:53 -118512.831610] SPR radius for FAST iterations: 25 (autodetect) [00:21:53 -118512.831610] Model parameter optimization (eps = 3.000000) [00:22:21 -118467.769685] FAST spr round 1 (radius: 25) [00:26:13 -99786.304383] FAST spr round 2 (radius: 25) [00:29:07 -98394.760595] FAST spr round 3 (radius: 25) [00:31:48 -98288.302661] FAST spr round 4 (radius: 25) [00:34:17 -98256.530237] FAST spr round 5 (radius: 25) [00:36:35 -98248.582681] FAST spr round 6 (radius: 25) [00:38:46 -98248.582661] Model parameter optimization (eps = 1.000000) [00:39:01 -98246.466105] SLOW spr round 1 (radius: 5) [00:42:09 -98207.573720] SLOW spr round 2 (radius: 5) [00:45:12 -98204.743747] SLOW spr round 3 (radius: 5) [00:48:14 -98204.588071] SLOW spr round 4 (radius: 5) [00:51:08 -98204.588049] SLOW spr round 5 (radius: 10) [00:54:07 -98202.720567] SLOW spr round 6 (radius: 5) [00:57:52 -98196.954548] SLOW spr round 7 (radius: 5) [01:01:08 -98192.712293] SLOW spr round 8 (radius: 5) [01:04:09 -98192.712263] SLOW spr round 9 (radius: 10) [01:07:04 -98192.712263] SLOW spr round 10 (radius: 15) [01:07:45] [worker #1] ML tree search #2, logLikelihood: -98196.621887 [01:11:28 -98192.712263] SLOW spr round 11 (radius: 20) [01:17:24 -98192.712263] SLOW spr round 12 (radius: 25) [01:25:45 -98192.712263] Model parameter optimization (eps = 0.100000) [01:25:52] [worker #0] ML tree search #1, logLikelihood: -98192.630024 [01:25:52 -410322.868827] Initial branch length optimization [01:25:59 -351012.377507] Model parameter optimization (eps = 10.000000) [01:26:48 -350230.779894] AUTODETECT spr round 1 (radius: 5) [01:30:25 -228167.046836] AUTODETECT spr round 2 (radius: 10) [01:34:10] [worker #3] ML tree search #4, logLikelihood: -98170.428203 [01:34:12 -167062.290398] AUTODETECT spr round 3 (radius: 15) [01:38:28 -136270.417030] AUTODETECT spr round 4 (radius: 20) [01:43:07 -124373.488636] AUTODETECT spr round 5 (radius: 25) [01:48:47 -119258.973798] SPR radius for FAST iterations: 25 (autodetect) [01:48:47 -119258.973798] Model parameter optimization (eps = 3.000000) [01:49:13 -119233.285109] FAST spr round 1 (radius: 25) [01:53:09 -99319.124691] FAST spr round 2 (radius: 25) [01:56:13 -98330.981063] FAST spr round 3 (radius: 25) [01:57:58] [worker #4] ML tree search #5, logLikelihood: -98177.461728 [01:59:00 -98233.003266] FAST spr round 4 (radius: 25) [02:01:22 -98224.357904] FAST spr round 5 (radius: 25) [02:01:41] [worker #2] ML tree search #3, logLikelihood: -98178.348145 [02:03:35 -98224.357548] Model parameter optimization (eps = 1.000000) [02:03:54 -98214.249461] SLOW spr round 1 (radius: 5) [02:07:12 -98179.086088] SLOW spr round 2 (radius: 5) [02:10:23 -98177.307787] SLOW spr round 3 (radius: 5) [02:13:27 -98173.803982] SLOW spr round 4 (radius: 5) [02:16:23 -98173.803916] SLOW spr round 5 (radius: 10) [02:19:20 -98170.377949] SLOW spr round 6 (radius: 5) [02:23:00 -98169.703252] SLOW spr round 7 (radius: 5) [02:26:13 -98169.703221] SLOW spr round 8 (radius: 10) [02:29:14 -98169.703221] SLOW spr round 9 (radius: 15) [02:33:37 -98169.703221] SLOW spr round 10 (radius: 20) [02:39:51 -98169.703221] SLOW spr round 11 (radius: 25) [02:46:17] [worker #1] ML tree search #7, logLikelihood: -98159.067797 [02:48:14 -98169.703221] Model parameter optimization (eps = 0.100000) [02:48:23] [worker #0] ML tree search #6, logLikelihood: -98169.671036 [02:48:23 -412803.985672] Initial branch length optimization [02:48:30 -353257.264620] Model parameter optimization (eps = 10.000000) [02:49:30 -352342.983862] AUTODETECT spr round 1 (radius: 5) [02:53:06 -236988.507015] AUTODETECT spr round 2 (radius: 10) [02:56:59 -169015.695056] AUTODETECT spr round 3 (radius: 15) [03:01:22 -136538.727220] AUTODETECT spr round 4 (radius: 20) [03:05:53 -120635.533135] AUTODETECT spr round 5 (radius: 25) [03:11:34 -117096.260062] SPR radius for FAST iterations: 25 (autodetect) [03:11:34 -117096.260062] Model parameter optimization (eps = 3.000000) [03:11:59 -117041.462044] FAST spr round 1 (radius: 25) [03:15:51 -98846.639872] FAST spr round 2 (radius: 25) [03:17:44] [worker #4] ML tree search #10, logLikelihood: -98181.791485 [03:18:49 -98342.028556] FAST spr round 3 (radius: 25) [03:21:23 -98276.195704] FAST spr round 4 (radius: 25) [03:23:44 -98256.745782] FAST spr round 5 (radius: 25) [03:25:55 -98256.745557] Model parameter optimization (eps = 1.000000) [03:26:03 -98256.417479] SLOW spr round 1 (radius: 5) [03:29:13 -98209.628317] SLOW spr round 2 (radius: 5) [03:32:16 -98200.363066] SLOW spr round 3 (radius: 5) [03:33:15] [worker #3] ML tree search #9, logLikelihood: -98196.874260 [03:35:18 -98196.059999] SLOW spr round 4 (radius: 5) [03:38:14 -98196.059809] SLOW spr round 5 (radius: 10) [03:41:07 -98194.587717] SLOW spr round 6 (radius: 5) [03:44:43] [worker #2] ML tree search #8, logLikelihood: -98192.130731 [03:44:45 -98194.056437] SLOW spr round 7 (radius: 5) [03:47:58 -98194.056122] SLOW spr round 8 (radius: 10) [03:50:58 -98194.055990] SLOW spr round 9 (radius: 15) [03:55:10 -98194.055882] SLOW spr round 10 (radius: 20) [04:00:36 -98194.055775] SLOW spr round 11 (radius: 25) [04:06:13] [worker #1] ML tree search #12, logLikelihood: -98193.724685 [04:08:02 -98194.055667] Model parameter optimization (eps = 0.100000) [04:08:16] [worker #0] ML tree search #11, logLikelihood: -98192.681088 [04:08:16 -411151.240675] Initial branch length optimization [04:08:24 -352603.904142] Model parameter optimization (eps = 10.000000) [04:09:15 -351817.947187] AUTODETECT spr round 1 (radius: 5) [04:12:53 -241087.850054] AUTODETECT spr round 2 (radius: 10) [04:16:47 -168384.647855] AUTODETECT spr round 3 (radius: 15) [04:20:57 -135712.867964] AUTODETECT spr round 4 (radius: 20) [04:25:30 -122381.078288] AUTODETECT spr round 5 (radius: 25) [04:30:33 -119409.016623] SPR radius for FAST iterations: 25 (autodetect) [04:30:33 -119409.016623] Model parameter optimization (eps = 3.000000) [04:30:58 -119372.421006] FAST spr round 1 (radius: 25) [04:34:51 -99282.687505] FAST spr round 2 (radius: 25) [04:37:40 -98343.811964] FAST spr round 3 (radius: 25) [04:40:12 -98259.454129] FAST spr round 4 (radius: 25) [04:42:32 -98253.521254] FAST spr round 5 (radius: 25) [04:44:46 -98248.320584] FAST spr round 6 (radius: 25) [04:46:54 -98248.320481] Model parameter optimization (eps = 1.000000) [04:47:12 -98239.366772] SLOW spr round 1 (radius: 5) [04:50:17 -98206.287610] SLOW spr round 2 (radius: 5) [04:53:17 -98200.725824] SLOW spr round 3 (radius: 5) [04:53:40] [worker #3] ML tree search #14, logLikelihood: -98181.319042 [04:55:01] [worker #4] ML tree search #15, logLikelihood: -98199.699093 [04:56:17 -98200.725357] SLOW spr round 4 (radius: 10) [04:59:11 -98198.229973] SLOW spr round 5 (radius: 5) [05:02:52 -98194.093403] SLOW spr round 6 (radius: 5) [05:03:07] [worker #2] ML tree search #13, logLikelihood: -98166.104047 [05:06:06 -98191.655413] SLOW spr round 7 (radius: 5) [05:09:07 -98191.655404] SLOW spr round 8 (radius: 10) [05:12:02 -98191.655404] SLOW spr round 9 (radius: 15) [05:16:21 -98191.655404] SLOW spr round 10 (radius: 20) [05:22:11 -98191.105770] SLOW spr round 11 (radius: 5) [05:26:08 -98191.105760] SLOW spr round 12 (radius: 10) [05:29:43 -98191.105760] SLOW spr round 13 (radius: 15) [05:33:47 -98191.105760] SLOW spr round 14 (radius: 20) [05:39:42 -98191.105760] SLOW spr round 15 (radius: 25) [05:47:40 -98191.105760] Model parameter optimization (eps = 0.100000) [05:47:49] [worker #0] ML tree search #16, logLikelihood: -98190.998781 [05:53:03] [worker #1] ML tree search #17, logLikelihood: -98163.760987 [06:20:58] [worker #2] ML tree search #18, logLikelihood: -98166.812671 [06:33:24] [worker #4] ML tree search #20, logLikelihood: -98188.848474 [06:58:45] [worker #3] ML tree search #19, logLikelihood: -98182.836521 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.194915,0.297916) (0.245430,0.451794) (0.282654,0.882900) (0.277001,2.099244) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -98159.067797 AIC score: 200328.135594 / AICc score: 8244388.135594 / BIC score: 207459.575858 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=259). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6R6M4/3_mltree/Q6R6M4.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6R6M4/3_mltree/Q6R6M4.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6R6M4/3_mltree/Q6R6M4.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6R6M4/3_mltree/Q6R6M4.raxml.log Analysis started: 01-Jul-2021 00:43:04 / finished: 01-Jul-2021 07:41:50 Elapsed time: 25126.033 seconds Consumed energy: 1963.308 Wh (= 10 km in an electric car, or 49 km with an e-scooter!)