RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 23:23:52 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/2_msa/Q6NSW7_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/2_msa/Q6NSW7_trimmed_msa.fasta [00:00:00] Loaded alignment with 1000 taxa and 63 sites WARNING: Sequences tr_B4QA29_B4QA29_DROSI_7240 and sp_Q04787_BSH_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QA29_B4QA29_DROSI_7240 and tr_B4I5Z9_B4I5Z9_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QA29_B4QA29_DROSI_7240 and tr_A0A1W4VK89_A0A1W4VK89_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and sp_P20009_DLL_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_B4J4C5_B4J4C5_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_B4IH92_B4IH92_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_A0A0R3NNK2_A0A0R3NNK2_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_K7IUX7_K7IUX7_NASVI_7425 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_A0A087ZMZ9_A0A087ZMZ9_APIME_7460 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_A0A158NCY4_A0A158NCY4_ATTCE_12957 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_Q7PTF4_Q7PTF4_ANOGA_7165 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_B4MPA7_B4MPA7_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_B3MC35_B3MC35_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_B4GIC8_B4GIC8_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_B4KTK2_B4KTK2_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_A0A0L0BPR6_A0A0L0BPR6_LUCCU_7375 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_A0A3Q0J0V4_A0A3Q0J0V4_DIACI_121845 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_A0A0M4EKJ2_A0A0M4EKJ2_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_A0A1W4UMZ4_A0A1W4UMZ4_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_A0A1W4XKR1_A0A1W4XKR1_AGRPL_224129 are exactly identical! WARNING: Sequences tr_B4R6N6_B4R6N6_DROSI_7240 and sp_Q24255_BARH1_DROME_7227 are exactly identical! WARNING: Sequences tr_B4R6N6_B4R6N6_DROSI_7240 and tr_B4IF10_B4IF10_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4R6N6_B4R6N6_DROSI_7240 and tr_B5DM45_B5DM45_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4R6N6_B4R6N6_DROSI_7240 and tr_B4MSD5_B4MSD5_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4R6N6_B4R6N6_DROSI_7240 and tr_B3MW33_B3MW33_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4R6N6_B4R6N6_DROSI_7240 and tr_B4GYB3_B4GYB3_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4R6N6_B4R6N6_DROSI_7240 and tr_B4M1G5_B4M1G5_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4R6N6_B4R6N6_DROSI_7240 and tr_B4L2L9_B4L2L9_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4R6N6_B4R6N6_DROSI_7240 and tr_A0A0L0C0E6_A0A0L0C0E6_LUCCU_7375 are exactly identical! WARNING: Sequences tr_B4R6N6_B4R6N6_DROSI_7240 and tr_A0A0M4EP21_A0A0M4EP21_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4R6N6_B4R6N6_DROSI_7240 and tr_A0A1W4VJC5_A0A1W4VJC5_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4R7F4_B4R7F4_DROSI_7240 and sp_P22808_VND_DROME_7227 are exactly identical! WARNING: Sequences tr_B4R7F4_B4R7F4_DROSI_7240 and tr_B4JN60_B4JN60_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4R7F4_B4R7F4_DROSI_7240 and tr_B4I934_B4I934_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4R7F4_B4R7F4_DROSI_7240 and tr_Q29I54_Q29I54_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4R7F4_B4R7F4_DROSI_7240 and tr_B4N261_B4N261_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4R7F4_B4R7F4_DROSI_7240 and tr_B3MYA4_B3MYA4_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4R7F4_B4R7F4_DROSI_7240 and tr_B4HAA5_B4HAA5_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4R7F4_B4R7F4_DROSI_7240 and tr_B4M2J7_B4M2J7_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4R7F4_B4R7F4_DROSI_7240 and tr_B4L4L5_B4L4L5_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4R7F4_B4R7F4_DROSI_7240 and tr_A0A0L0BW72_A0A0L0BW72_LUCCU_7375 are exactly identical! WARNING: Sequences tr_B4R7F4_B4R7F4_DROSI_7240 and tr_A0A0M4F8R5_A0A0M4F8R5_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4R7F4_B4R7F4_DROSI_7240 and tr_A0A1W4UVN0_A0A1W4UVN0_DROFC_30025 are exactly identical! WARNING: Sequences tr_E9GRR4_E9GRR4_DAPPU_6669 and tr_A0A164K1J9_A0A164K1J9_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E2AJI3_E2AJI3_CAMFO_104421 and tr_A0A088AD11_A0A088AD11_APIME_7460 are exactly identical! WARNING: Sequences tr_E2AJI3_E2AJI3_CAMFO_104421 and tr_A0A158NHH7_A0A158NHH7_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AJI3_E2AJI3_CAMFO_104421 and tr_F4WVP6_F4WVP6_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AJI3_E2AJI3_CAMFO_104421 and tr_E2BHI8_E2BHI8_HARSA_610380 are exactly identical! WARNING: Sequences tr_E2AJI3_E2AJI3_CAMFO_104421 and tr_A0A026WQ85_A0A026WQ85_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2AJI3_E2AJI3_CAMFO_104421 and tr_A0A0M8ZSE7_A0A0M8ZSE7_9HYME_166423 are exactly identical! WARNING: Sequences tr_E2AJI3_E2AJI3_CAMFO_104421 and tr_A0A0L7QWW7_A0A0L7QWW7_9HYME_597456 are exactly identical! WARNING: Sequences tr_E2AJI3_E2AJI3_CAMFO_104421 and tr_A0A154PGP9_A0A154PGP9_9HYME_178035 are exactly identical! WARNING: Sequences tr_E2AJI3_E2AJI3_CAMFO_104421 and tr_A0A195E2Z1_A0A195E2Z1_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2AJI3_E2AJI3_CAMFO_104421 and tr_A0A195AV40_A0A195AV40_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2AJI3_E2AJI3_CAMFO_104421 and tr_A0A195FX46_A0A195FX46_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2AJI3_E2AJI3_CAMFO_104421 and tr_A0A2A3EKZ5_A0A2A3EKZ5_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_F1NVB2_F1NVB2_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and sp_O93367_TLX3_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and sp_O55144_TLX3_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_M3YN57_M3YN57_MUSPF_9669 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_H2LG46_H2LG46_ORYLA_8090 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_H2PHC5_H2PHC5_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_G1KRB3_G1KRB3_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_G1SEB9_G1SEB9_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_E2RTA8_E2RTA8_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_H2QS00_H2QS00_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_F7EJY9_F7EJY9_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_F7CEH9_F7CEH9_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_G3V6M6_G3V6M6_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A3B5Q588_A0A3B5Q588_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_I3JBS3_I3JBS3_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_I3NAR5_I3NAR5_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_H0XN07_H0XN07_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A286XL40_A0A286XL40_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and sp_O43711_TLX3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_H3D6F3_H3D6F3_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_G3Q178_G3Q178_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_G5E7G2_G5E7G2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_G3VY91_G3VY91_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A2R8P1M7_A0A2R8P1M7_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_F1RRY1_F1RRY1_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_G1LB88_G1LB88_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_F1MTI8_F1MTI8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_L5L1R4_L5L1R4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A2I2V1A4_A0A2I2V1A4_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A087XKS9_A0A087XKS9_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A096NCH0_A0A096NCH0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A0D9RBH5_A0A0D9RBH5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A0Q3P171_A0A0Q3P171_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A1U7QE71_A0A1U7QE71_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A2I4B4L5_A0A2I4B4L5_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A226NBW6_A0A226NBW6_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A226PBK5_A0A226PBK5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A2K5N5C3_A0A2K5N5C3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A2K6DPH6_A0A2K6DPH6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A2U3VC04_A0A2U3VC04_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A2U3XVM9_A0A2U3XVM9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A2U9C6H5_A0A2U9C6H5_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A2Y9DBH9_A0A2Y9DBH9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A2Y9IKU6_A0A2Y9IKU6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A2Y9Q658_A0A2Y9Q658_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A2Y9FTG1_A0A2Y9FTG1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A0G2KH34_A0A0G2KH34_DANRE_7955 and tr_A0A383Z960_A0A383Z960_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2R8QHC0_A0A2R8QHC0_DANRE_7955 and tr_A0A1D5PST1_A0A1D5PST1_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A2R8QHC0_A0A2R8QHC0_DANRE_7955 and tr_H9H049_H9H049_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A2R8QHC0_A0A2R8QHC0_DANRE_7955 and tr_H2T8D0_H2T8D0_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A2R8QHC0_A0A2R8QHC0_DANRE_7955 and tr_H3D699_H3D699_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A2R8QHC0_A0A2R8QHC0_DANRE_7955 and tr_A0A0P7U4L0_A0A0P7U4L0_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A2R8QHC0_A0A2R8QHC0_DANRE_7955 and tr_A0A1S3RSP2_A0A1S3RSP2_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8QHC0_A0A2R8QHC0_DANRE_7955 and tr_A0A1S3ST32_A0A1S3ST32_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8QHC0_A0A2R8QHC0_DANRE_7955 and tr_A0A060WQJ5_A0A060WQJ5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2R8QHC0_A0A2R8QHC0_DANRE_7955 and tr_A0A060XVX1_A0A060XVX1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2R8QHC0_A0A2R8QHC0_DANRE_7955 and tr_A0A226MNF8_A0A226MNF8_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1QSY0_F1QSY0_DANRE_7955 and tr_A0A3B1IN35_A0A3B1IN35_ASTMX_7994 are exactly identical! WARNING: Sequences tr_F1QSY0_F1QSY0_DANRE_7955 and tr_A0A0P7W0P1_A0A0P7W0P1_9TELE_113540 are exactly identical! WARNING: Sequences tr_F1QSY0_F1QSY0_DANRE_7955 and tr_A0A1S3KZ13_A0A1S3KZ13_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1QSY0_F1QSY0_DANRE_7955 and tr_A0A1S3RI89_A0A1S3RI89_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1QSY0_F1QSY0_DANRE_7955 and tr_A0A060VW77_A0A060VW77_ONCMY_8022 are exactly identical! WARNING: Sequences tr_F1QSY0_F1QSY0_DANRE_7955 and tr_A0A060XRL2_A0A060XRL2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_F1QSY0_F1QSY0_DANRE_7955 and tr_A0A218UFU2_A0A218UFU2_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1QSY0_F1QSY0_DANRE_7955 and tr_A0A2D0SD69_A0A2D0SD69_ICTPU_7998 are exactly identical! WARNING: Sequences sp_P50576_DLX5A_DANRE_7955 and tr_W5MYQ6_W5MYQ6_LEPOC_7918 are exactly identical! WARNING: Sequences sp_P50576_DLX5A_DANRE_7955 and tr_A0A1S3M4Z9_A0A1S3M4Z9_SALSA_8030 are exactly identical! WARNING: Sequences sp_P50576_DLX5A_DANRE_7955 and tr_A0A060YC75_A0A060YC75_ONCMY_8022 are exactly identical! WARNING: Sequences sp_P50576_DLX5A_DANRE_7955 and tr_A0A2D0PVS2_A0A2D0PVS2_ICTPU_7998 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_H2LGQ4_H2LGQ4_ORYLA_8090 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_G1KDM1_G1KDM1_ANOCA_28377 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_M4AKJ7_M4AKJ7_XIPMA_8083 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_I3KVA6_I3KVA6_ORENI_8128 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_H2UZF1_H2UZF1_TAKRU_31033 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_K7F7R0_K7F7R0_PELSI_13735 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_G3P633_G3P633_GASAC_69293 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_U3IGE6_U3IGE6_ANAPL_8839 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_W5N6Z5_W5N6Z5_LEPOC_7918 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A087Y7B5_A0A087Y7B5_POEFO_48698 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A0P7YLH9_A0A0P7YLH9_9TELE_113540 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A151P5T4_A0A151P5T4_ALLMI_8496 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A0Q3U2G4_A0A0Q3U2G4_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A091FQB9_A0A091FQB9_9AVES_55661 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A2I0LNW7_A0A2I0LNW7_COLLI_8932 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A093G7N5_A0A093G7N5_DRYPU_118200 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A1S3NFR3_A0A1S3NFR3_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_B5X7Z9_B5X7Z9_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A1L8ES65_A0A1L8ES65_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A1U7RSU1_A0A1U7RSU1_ALLSI_38654 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A1V4JSA8_A0A1V4JSA8_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A2I4AJ98_A0A2I4AJ98_9TELE_52670 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A060Z3C6_A0A060Z3C6_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A218UHD5_A0A218UHD5_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A226MKY6_A0A226MKY6_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q01702_DLX3B_DANRE_7955 and tr_A0A2U9CLJ2_A0A2U9CLJ2_SCOMX_52904 are exactly identical! WARNING: Sequences sp_Q01703_MSXC_DANRE_7955 and tr_A0A3B5Q3V6_A0A3B5Q3V6_XIPMA_8083 are exactly identical! WARNING: Sequences sp_Q01703_MSXC_DANRE_7955 and tr_I3KH78_I3KH78_ORENI_8128 are exactly identical! WARNING: Sequences sp_Q01703_MSXC_DANRE_7955 and tr_H2T0X9_H2T0X9_TAKRU_31033 are exactly identical! WARNING: Sequences sp_Q01703_MSXC_DANRE_7955 and tr_H2TD75_H2TD75_TAKRU_31033 are exactly identical! WARNING: Sequences sp_Q01703_MSXC_DANRE_7955 and tr_H3CZ05_H3CZ05_TETNG_99883 are exactly identical! WARNING: Sequences sp_Q01703_MSXC_DANRE_7955 and tr_W5M9W1_W5M9W1_LEPOC_7918 are exactly identical! WARNING: Sequences sp_Q01703_MSXC_DANRE_7955 and tr_A0A0P7U8T3_A0A0P7U8T3_9TELE_113540 are exactly identical! WARNING: Sequences sp_Q01703_MSXC_DANRE_7955 and tr_A0A2D0QP67_A0A2D0QP67_ICTPU_7998 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and sp_Q6RFL5_BSH_CHICK_9031 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and sp_Q810B3_BSH_MOUSE_10090 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_M3Y354_M3Y354_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A3B3HB99_A0A3B3HB99_ORYLA_8090 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_G1R766_G1R766_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_G1PX86_G1PX86_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_G3QU78_G3QU78_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_G1SI27_G1SI27_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_E2R0R6_E2R0R6_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_H2Q4Z9_H2Q4Z9_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_F7DC81_F7DC81_MONDO_13616 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_F6RU38_F6RU38_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_W5NPH2_W5NPH2_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_D4A5F6_D4A5F6_RAT_10116 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_M3ZH93_M3ZH93_XIPMA_8083 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_I3JAU7_I3JAU7_ORENI_8128 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_I3NDB2_I3NDB2_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_H0XBA7_H0XBA7_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_H2RYM3_H2RYM3_TAKRU_31033 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_H0UXW7_H0UXW7_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and sp_Q3C1V8_BSH_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_G5BS01_G5BS01_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_H3CT60_H3CT60_TETNG_99883 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_G3Q9L7_G3Q9L7_GASAC_69293 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_G3TDR4_G3TDR4_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_F7IBW0_F7IBW0_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_F1S9Q4_F1S9Q4_PIG_9823 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_H3A024_H3A024_LATCH_7897 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_G1LP77_G1LP77_AILME_9646 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_G7PPC9_G7PPC9_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_E1BAF5_E1BAF5_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_L5JT80_L5JT80_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_M3W5J1_M3W5J1_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_U3JTH6_U3JTH6_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_W5ME06_W5ME06_LEPOC_7918 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A087XV04_A0A087XV04_POEFO_48698 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A096NYE2_A0A096NYE2_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A0D9S439_A0A0D9S439_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A0P7Z503_A0A0P7Z503_9TELE_113540 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A151NQA9_A0A151NQA9_ALLMI_8496 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A0Q3Q4X4_A0A0Q3Q4X4_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A091WK62_A0A091WK62_NIPNI_128390 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A091FX20_A0A091FX20_9AVES_55661 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A091HII7_A0A091HII7_CALAN_9244 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A1S3A402_A0A1S3A402_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A1S3ELZ1_A0A1S3ELZ1_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A1S3LP52_A0A1S3LP52_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A1S3RLD3_A0A1S3RLD3_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A1U7TM22_A0A1U7TM22_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A1U7QMV6_A0A1U7QMV6_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A1V4J7A0_A0A1V4J7A0_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A060VTQ7_A0A060VTQ7_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A060X0X4_A0A060X0X4_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A218UEQ0_A0A218UEQ0_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A226NEH6_A0A226NEH6_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A226PP52_A0A226PP52_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A2K5NJV4_A0A2K5NJV4_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A2K6DHS6_A0A2K6DHS6_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A2K5ZB60_A0A2K5ZB60_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A2R9C627_A0A2R9C627_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A2U4BVR5_A0A2U4BVR5_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A2U3WVT3_A0A2U3WVT3_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A2U3YIA5_A0A2U3YIA5_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A2Y9G1I3_A0A2Y9G1I3_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A2Y9KGN0_A0A2Y9KGN0_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A2Y9MFR8_A0A2Y9MFR8_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q6R3Q6_BSH_DANRE_7955 and tr_A0A2Y9FRD4_A0A2Y9FRD4_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q98876_DLX2B_DANRE_7955 and tr_H2V8C6_H2V8C6_TAKRU_31033 are exactly identical! WARNING: Sequences sp_Q98876_DLX2B_DANRE_7955 and tr_H3DHR4_H3DHR4_TETNG_99883 are exactly identical! WARNING: Sequences sp_Q98876_DLX2B_DANRE_7955 and tr_Q0PJT7_Q0PJT7_ASTMX_7994 are exactly identical! WARNING: Sequences sp_Q98876_DLX2B_DANRE_7955 and tr_W5JZ05_W5JZ05_ASTMX_7994 are exactly identical! WARNING: Sequences sp_Q98876_DLX2B_DANRE_7955 and tr_A0A2D0Q3P5_A0A2D0Q3P5_ICTPU_7998 are exactly identical! WARNING: Sequences sp_Q98876_DLX2B_DANRE_7955 and tr_A0A2D0R3F4_A0A2D0R3F4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and sp_P63157_BARH1_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_M3YM78_M3YM78_MUSPF_9669 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_G1RQV8_G1RQV8_NOMLE_61853 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_G3QZ20_G3QZ20_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_C3Z546_C3Z546_BRAFL_7739 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_H2PTS1_H2PTS1_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_G1TRU2_G1TRU2_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_E2QSL9_E2QSL9_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A2J8NAK0_A0A2J8NAK0_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_F6PNM9_F6PNM9_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_F6W4G4_F6W4G4_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_W5P7K8_W5P7K8_SHEEP_9940 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and sp_P63156_BARH1_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_I3NBW7_I3NBW7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_H0WP37_H0WP37_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_H0W932_H0W932_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and sp_Q9BZE3_BARH1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_G5AT43_G5AT43_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_G3TF12_G3TF12_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_G3X3G7_G3X3G7_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_F6U1C3_F6U1C3_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_F1S0T9_F1S0T9_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_H3ADE4_H3ADE4_LATCH_7897 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_G7PRA3_G7PRA3_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_E1B9T6_E1B9T6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_L5K7G5_L5K7G5_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_M3W741_M3W741_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_U3JFH5_U3JFH5_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_W5MEG0_W5MEG0_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A096P0E1_A0A096P0E1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A0D9RR12_A0A0D9RR12_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A091GMS9_A0A091GMS9_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A091HS67_A0A091HS67_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A1S3A1Q4_A0A1S3A1Q4_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A1L8F6A7_A0A1L8F6A7_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A1U7U5I0_A0A1U7U5I0_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A1V4J675_A0A1V4J675_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A218V661_A0A218V661_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A226NNY5_A0A226NNY5_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A226P0E4_A0A226P0E4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A2K5LG79_A0A2K5LG79_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A2K6E700_A0A2K6E700_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A2K5XR01_A0A2K5XR01_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A2R9AHX1_A0A2R9AHX1_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A2U4A555_A0A2U4A555_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A2U3VD22_A0A2U3VD22_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A2U3YK34_A0A2U3YK34_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A2Y9DJN5_A0A2Y9DJN5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A2Y9JDE4_A0A2Y9JDE4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A2Y9NJ17_A0A2Y9NJ17_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A2Y9S9V3_A0A2Y9S9V3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A1D5PMT7_A0A1D5PMT7_CHICK_9031 and tr_A0A384B672_A0A384B672_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A1D5PW02_A0A1D5PW02_CHICK_9031 and tr_K7F384_K7F384_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5PW02_A0A1D5PW02_CHICK_9031 and tr_H0Z716_H0Z716_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5PW02_A0A1D5PW02_CHICK_9031 and tr_A0A3B1JSK7_A0A3B1JSK7_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A1D5PW02_A0A1D5PW02_CHICK_9031 and tr_A0A0Q3MID6_A0A0Q3MID6_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5PW02_A0A1D5PW02_CHICK_9031 and tr_A0A218VEN0_A0A218VEN0_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PW02_A0A1D5PW02_CHICK_9031 and tr_A0A226MHL4_A0A226MHL4_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PW02_A0A1D5PW02_CHICK_9031 and tr_A0A226PN76_A0A226PN76_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PW02_A0A1D5PW02_CHICK_9031 and tr_A0A2D0RY51_A0A2D0RY51_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1I7Q452_A0A1I7Q452_CHICK_9031 and sp_A7Y7W3_NANOG_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A1I7Q452_A0A1I7Q452_CHICK_9031 and tr_G1NME2_G1NME2_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1I7Q452_A0A1I7Q452_CHICK_9031 and tr_A0A226MLX4_A0A226MLX4_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1I7Q452_A0A1I7Q452_CHICK_9031 and tr_A0A226NY12_A0A226NY12_COLVI_9014 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and sp_Q03358_MSX2_MOUSE_10090 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_M3YMM2_M3YMM2_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_H2MQB9_H2MQB9_ORYLA_8090 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_G1QI88_G1QI88_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_G1PVZ3_G1PVZ3_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_G3H1A6_G3H1A6_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and sp_A1YF16_MSX2_GORGO_9595 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_G1MX89_G1MX89_MELGA_9103 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_G1KQK2_G1KQK2_ANOCA_28377 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and sp_Q9GK08_MSX2_CANLF_9615 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_K7D1L0_K7D1L0_PANTR_9598 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_F6WWM9_F6WWM9_MONDO_13616 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_F7AIQ4_F7AIQ4_HORSE_9796 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and sp_P52953_MSX2_RAT_10116 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A3B5Q3L0_A0A3B5Q3L0_XIPMA_8083 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_I3KTK3_I3KTK3_ORENI_8128 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_I3LWJ7_I3LWJ7_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_H0XS39_H0XS39_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_H2RYV9_H2RYV9_TAKRU_31033 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_H2UVP9_H2UVP9_TAKRU_31033 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A286XWB9_A0A286XWB9_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and sp_P35548_MSX2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_G5CAV8_G5CAV8_HETGA_10181 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_K7FTX5_K7FTX5_PELSI_13735 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_G3P039_G3P039_GASAC_69293 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_G3SPH2_G3SPH2_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_G3W6H8_G3W6H8_SARHA_9305 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_F7I6A5_F7I6A5_CALJA_9483 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A287BCF4_A0A287BCF4_PIG_9823 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_D2H5G1_D2H5G1_AILME_9646 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and sp_Q0P5C3_MSX2_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_L5L102_L5L102_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2I2UYT3_A0A2I2UYT3_FELCA_9685 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_U3KJ26_U3KJ26_FICAL_59894 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_U3J365_U3J365_ANAPL_8839 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A096LW83_A0A096LW83_POEFO_48698 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A096MPZ2_A0A096MPZ2_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A091DV05_A0A091DV05_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A0D9RAW3_A0A0D9RAW3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A0N8JZY0_A0A0N8JZY0_9TELE_113540 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A151M6R3_A0A151M6R3_ALLMI_8496 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A0Q3MRG9_A0A0Q3MRG9_AMAAE_12930 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A091EGN9_A0A091EGN9_CORBR_85066 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A093QGA3_A0A093QGA3_9PASS_328815 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A091VNU8_A0A091VNU8_NIPNI_128390 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A087REN5_A0A087REN5_APTFO_9233 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A091WWZ4_A0A091WWZ4_OPIHO_30419 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A099ZCY5_A0A099ZCY5_TINGU_94827 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A091GJT5_A0A091GJT5_9AVES_55661 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A0A0A8L7_A0A0A0A8L7_CHAVO_50402 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2I0LSU0_A0A2I0LSU0_COLLI_8932 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A093GJR8_A0A093GJR8_DRYPU_118200 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A091IAY6_A0A091IAY6_CALAN_9244 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A1S2ZTS5_A0A1S2ZTS5_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A1S3F6H5_A0A1S3F6H5_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A1S3LAN2_A0A1S3LAN2_SALSA_8030 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A1S3P754_A0A1S3P754_SALSA_8030 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A1L8GV68_A0A1L8GV68_XENLA_8355 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A1L8HKV3_A0A1L8HKV3_XENLA_8355 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A1U7S3X5_A0A1U7S3X5_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A1U7Q3P7_A0A1U7Q3P7_MESAU_10036 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A1V4KUF6_A0A1V4KUF6_PATFA_372326 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2I4BBJ9_A0A2I4BBJ9_9TELE_52670 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A060W3V8_A0A060W3V8_ONCMY_8022 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A218UN27_A0A218UN27_9PASE_299123 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A226N1E5_A0A226N1E5_CALSU_9009 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A226PMP2_A0A226PMP2_COLVI_9014 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2K5L3T2_A0A2K5L3T2_CERAT_9531 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2K6CNH2_A0A2K6CNH2_MACNE_9545 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2K5YX74_A0A2K5YX74_MANLE_9568 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and sp_A1YG93_MSX2_PANPA_9597 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2U4C8E7_A0A2U4C8E7_TURTR_9739 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2U3WYK8_A0A2U3WYK8_ODORO_9708 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2U3Z8Q0_A0A2U3Z8Q0_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2U9BGK9_A0A2U9BGK9_SCOMX_52904 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2Y9DAT7_A0A2Y9DAT7_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2Y9IPQ5_A0A2Y9IPQ5_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2Y9PV86_A0A2Y9PV86_DELLE_9749 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A2Y9EW31_A0A2Y9EW31_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A384C6Y7_A0A384C6Y7_URSMA_29073 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A384ASM7_A0A384ASM7_BALAS_310752 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and sp_P70396_DLX5_MOUSE_10090 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_M3XQZ9_M3XQZ9_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_G1PZR3_G1PZR3_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_G3HBM6_G3HBM6_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_G3QP29_G3QP29_GORGO_9595 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_H2PMV1_H2PMV1_PONAB_9601 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_G1KQ78_G1KQ78_ANOCA_28377 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_G1SVH5_G1SVH5_RABIT_9986 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_E2RJY3_E2RJY3_CANLF_9615 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_H2QUZ2_H2QUZ2_PANTR_9598 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_F7ADI5_F7ADI5_ORNAN_9258 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_H9H6V5_H9H6V5_MONDO_13616 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_F7DY45_F7DY45_HORSE_9796 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_W5P312_W5P312_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and sp_P50575_DLX5_RAT_10116 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_I3M5K1_I3M5K1_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_H0Y094_H0Y094_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_H0UX25_H0UX25_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and sp_P56178_DLX5_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_G5BLD2_G5BLD2_HETGA_10181 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_K7F8I1_K7F8I1_PELSI_13735 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_G3TMF1_G3TMF1_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_G3VTT4_G3VTT4_SARHA_9305 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_U3CZY2_U3CZY2_CALJA_9483 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A287AIX4_A0A287AIX4_PIG_9823 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_G1LGA3_G1LGA3_AILME_9646 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_G7P1B2_G7P1B2_MACFA_9541 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_Q1RMR7_Q1RMR7_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_L5KLJ7_L5KLJ7_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A2I2UAL0_A0A2I2UAL0_FELCA_9685 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_U3J9I3_U3J9I3_ANAPL_8839 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A096MVX4_A0A096MVX4_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A091DM51_A0A091DM51_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A0D9RKQ7_A0A0D9RKQ7_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A151MQD8_A0A151MQD8_ALLMI_8496 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A0Q3T7U2_A0A0Q3T7U2_AMAAE_12930 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A091EGN3_A0A091EGN3_CORBR_85066 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A091GKI8_A0A091GKI8_9AVES_55661 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A2I0MR65_A0A2I0MR65_COLLI_8932 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A093GS46_A0A093GS46_DRYPU_118200 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A091HXT5_A0A091HXT5_CALAN_9244 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A1S3ABX2_A0A1S3ABX2_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A1S3GTM9_A0A1S3GTM9_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A1U7QNW3_A0A1U7QNW3_MESAU_10036 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A1V4KBX0_A0A1V4KBX0_PATFA_372326 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A218V8P3_A0A218V8P3_9PASE_299123 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A226NIX4_A0A226NIX4_CALSU_9009 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A226PXC7_A0A226PXC7_COLVI_9014 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A2K6AZP3_A0A2K6AZP3_MACNE_9545 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A2K5ZBD4_A0A2K5ZBD4_MANLE_9568 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A2R9ALQ5_A0A2R9ALQ5_PANPA_9597 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A2U4AQR7_A0A2U4AQR7_TURTR_9739 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A2U3WMJ8_A0A2U3WMJ8_ODORO_9708 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A2U3XXX5_A0A2U3XXX5_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A2Y9E353_A0A2Y9E353_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A2Y9JHN2_A0A2Y9JHN2_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A2Y9PFK2_A0A2Y9PFK2_DELLE_9749 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A2Y9F6U1_A0A2Y9F6U1_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A384BQJ5_A0A384BQJ5_URSMA_29073 are exactly identical! WARNING: Sequences sp_P50577_DLX5_CHICK_9031 and tr_A0A383YPY9_A0A383YPY9_BALAS_310752 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_M3Y039_M3Y039_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_G1PQ60_G1PQ60_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_G3HD72_G3HD72_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_G1TFK9_G1TFK9_RABIT_9986 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_J9NWE8_J9NWE8_CANLF_9615 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_F6YB75_F6YB75_HORSE_9796 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_W5PJ83_W5PJ83_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_D3ZM81_D3ZM81_RAT_10116 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_G3TPU4_G3TPU4_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_F1SHT1_F1SHT1_PIG_9823 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_M3X946_M3X946_FELCA_9685 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_A0A1S3WGF1_A0A1S3WGF1_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_A0A1S3FU97_A0A1S3FU97_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_A0A2U4ALW2_A0A2U4ALW2_TURTR_9739 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_A0A2U3VQF2_A0A2U3VQF2_ODORO_9708 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_A0A2U3XNN4_A0A2U3XNN4_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_A0A2Y9R8V7_A0A2Y9R8V7_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_A0A2Y9JCM5_A0A2Y9JCM5_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P02831_HXA3_MOUSE_10090 and tr_A0A2Y9PAD0_A0A2Y9PAD0_DELLE_9749 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_H2NVH5_H2NVH5_PONAB_9601 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_G1TIA7_G1TIA7_RABIT_9986 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A2I3RED6_A0A2I3RED6_PANTR_9598 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_F6TX65_F6TX65_HORSE_9796 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_F7FL39_F7FL39_RAT_10116 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_H0XIN9_H0XIN9_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and sp_P14651_HXB3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A1D5QLF7_A0A1D5QLF7_MACMU_9544 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_G5C4M0_G5C4M0_HETGA_10181 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_F7DL62_F7DL62_CALJA_9483 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_F1RWG6_F1RWG6_PIG_9823 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A5PKI4_A5PKI4_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_M3W5V0_M3W5V0_FELCA_9685 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A2I3NDR6_A0A2I3NDR6_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A0D9S3S1_A0A0D9S3S1_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A1S3A688_A0A1S3A688_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A1S3GXE8_A0A1S3GXE8_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A1U7T5E0_A0A1U7T5E0_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A1U7QYU5_A0A1U7QYU5_MESAU_10036 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A2K5LMF8_A0A2K5LMF8_CERAT_9531 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A2K6BZL1_A0A2K6BZL1_MACNE_9545 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A2K5XSF4_A0A2K5XSF4_MANLE_9568 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A2R9AT25_A0A2R9AT25_PANPA_9597 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A2U3VAC1_A0A2U3VAC1_TURTR_9739 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A2U3VK54_A0A2U3VK54_ODORO_9708 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A2Y9DNN5_A0A2Y9DNN5_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A2Y9JWX2_A0A2Y9JWX2_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A2Y9LVH7_A0A2Y9LVH7_DELLE_9749 are exactly identical! WARNING: Sequences sp_P09026_HXB3_MOUSE_10090 and tr_A0A2Y9T6S2_A0A2Y9T6S2_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P43345_TLX1_MOUSE_10090 and tr_G3WJ06_G3WJ06_SARHA_9305 are exactly identical! WARNING: Sequences sp_P43345_TLX1_MOUSE_10090 and tr_A0A1S3F8Q4_A0A1S3F8Q4_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P43345_TLX1_MOUSE_10090 and tr_A0A2U3XI70_A0A2U3XI70_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P43345_TLX1_MOUSE_10090 and tr_A0A2Y9D926_A0A2Y9D926_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P43345_TLX1_MOUSE_10090 and tr_A0A384AJT5_A0A384AJT5_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_M3YVE3_M3YVE3_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_G1QSR5_G1QSR5_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_G1P8X7_G1P8X7_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_G3HJQ7_G3HJQ7_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_G3RG95_G3RG95_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_H2NVL9_H2NVL9_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_G1STW6_G1STW6_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_E2RRW2_E2RRW2_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_H2QDE2_H2QDE2_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_F7G4K2_F7G4K2_MONDO_13616 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_F7DMX0_F7DMX0_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_D4ADD0_D4ADD0_RAT_10116 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_I3MF87_I3MF87_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_H0WRE5_H0WRE5_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_H0W328_H0W328_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and sp_O60479_DLX3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_F7HLW6_F7HLW6_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_G5C4I4_G5C4I4_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_G3WFN9_G3WFN9_SARHA_9305 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_F6REF2_F6REF2_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_F1RSH8_F1RSH8_PIG_9823 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_G7PU96_G7PU96_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A2VDN3_A2VDN3_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_L5JQL2_L5JQL2_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A337SQF0_A0A337SQF0_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A096P463_A0A096P463_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A091DV29_A0A091DV29_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A0D9QYS6_A0A0D9QYS6_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A1S2ZWI8_A0A1S2ZWI8_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A1S3GVC9_A0A1S3GVC9_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A1U7QKL4_A0A1U7QKL4_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A2D0SBY6_A0A2D0SBY6_ICTPU_7998 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A2K5P1P0_A0A2K5P1P0_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A2K6BS88_A0A2K6BS88_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A2K5XSM1_A0A2K5XSM1_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A2R8Z7N5_A0A2R8Z7N5_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A2U3VJY0_A0A2U3VJY0_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A2Y9DNL4_A0A2Y9DNL4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A2Y9JWY5_A0A2Y9JWY5_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A2Y9M8P0_A0A2Y9M8P0_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A2Y9TAA3_A0A2Y9TAA3_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q64205_DLX3_MOUSE_10090 and tr_A0A383ZNJ6_A0A383ZNJ6_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_H2NVL7_H2NVL7_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_J9NVU3_J9NVU3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_H2QDE1_H2QDE1_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_H0WRE3_H0WRE3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and sp_Q92988_DLX4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_G3TBC8_G3TBC8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_L5JQF4_L5JQF4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_A0A096P462_A0A096P462_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_A0A0D9QYS4_A0A0D9QYS4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_A0A1U7U0A3_A0A1U7U0A3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_A0A2K5MP13_A0A2K5MP13_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_A0A2K6CMA9_A0A2K6CMA9_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_A0A2K5Y6R4_A0A2K5Y6R4_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_A0A2R9C8V4_A0A2R9C8V4_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_A0A2U3VJW8_A0A2U3VJW8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_A0A2U3YYU3_A0A2U3YYU3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_A0A2Y9JX20_A0A2Y9JX20_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_A0A2Y9FQE7_A0A2Y9FQE7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YVE0_M3YVE0_MUSPF_9669 and tr_A0A383ZN06_A0A383ZN06_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YZ67_M3YZ67_MUSPF_9669 and tr_G1MF94_G1MF94_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YZ67_M3YZ67_MUSPF_9669 and tr_D3U663_D3U663_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YZ67_M3YZ67_MUSPF_9669 and tr_A0A2U3Y3X4_A0A2U3Y3X4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YZ67_M3YZ67_MUSPF_9669 and tr_A0A2Y9KW02_A0A2Y9KW02_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YZ67_M3YZ67_MUSPF_9669 and tr_A0A384BHS5_A0A384BHS5_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A3B3HAR4_A0A3B3HAR4_ORYLA_8090 and tr_A0A087Y8Y5_A0A087Y8Y5_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2LIB1_H2LIB1_ORYLA_8090 and tr_I3JXC6_I3JXC6_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2LIB1_H2LIB1_ORYLA_8090 and tr_A0A087XHA0_A0A087XHA0_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2LIB1_H2LIB1_ORYLA_8090 and tr_A0A2I4BG37_A0A2I4BG37_9TELE_52670 are exactly identical! WARNING: Sequences tr_B4JR73_B4JR73_DROGR_7222 and tr_Q29K03_Q29K03_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4JR73_B4JR73_DROGR_7222 and tr_B4MW94_B4MW94_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4JR73_B4JR73_DROGR_7222 and tr_B3ML61_B3ML61_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4JR73_B4JR73_DROGR_7222 and tr_B4GKW3_B4GKW3_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4JR73_B4JR73_DROGR_7222 and tr_B4LVG9_B4LVG9_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4JR73_B4JR73_DROGR_7222 and tr_B4KHW4_B4KHW4_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4JR73_B4JR73_DROGR_7222 and tr_A0A0M3QUA2_A0A0M3QUA2_DROBS_30019 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and tr_G1RYL3_G1RYL3_NOMLE_61853 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and tr_A0A2I2Z6U9_A0A2I2Z6U9_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and tr_G3RDK5_G3RDK5_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and tr_G3S4N9_G3S4N9_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and tr_H2NGD6_H2NGD6_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and tr_A0A2I3TBA5_A0A2I3TBA5_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and sp_A2T763_NANG2_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and sp_Q3LTE0_NANOG_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and sp_Q6NSW7_NANP8_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and sp_Q8N7R0_NANG2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and sp_Q9H9S0_NANOG_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and tr_A0A2R8MID8_A0A2R8MID8_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and tr_F7I8S8_F7I8S8_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and tr_A0A2R8ZE61_A0A2R8ZE61_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and tr_A0A2R9CD75_A0A2R9CD75_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3GUI6_A0A2I3GUI6_NOMLE_61853 and sp_A1YG92_NANG2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1Q4M5_G1Q4M5_MYOLU_59463 and tr_G1QF41_G1QF41_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G3SJ95_G3SJ95_GORGO_9595 and tr_A0A2I3S9B2_A0A2I3S9B2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SJ95_G3SJ95_GORGO_9595 and tr_A0A2R9A7W4_A0A2R9A7W4_PANPA_9597 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_E2R5E5_E2R5E5_CANLF_9615 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_K7G459_K7G459_PELSI_13735 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_G3WVN9_G3WVN9_SARHA_9305 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_H0ZDG6_H0ZDG6_TAEGU_59729 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_Q66JE3_Q66JE3_XENTR_8364 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_G1M303_G1M303_AILME_9646 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_G7PKU1_G7PKU1_MACFA_9541 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_L5K2G5_L5K2G5_PTEAL_9402 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_U3JH54_U3JH54_FICAL_59894 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_A0A091CVC1_A0A091CVC1_FUKDA_885580 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_A0A151M011_A0A151M011_ALLMI_8496 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_A0A1S3A028_A0A1S3A028_ERIEU_9365 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_A0A1S3G7D0_A0A1S3G7D0_DIPOR_10020 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_A0A1V4K6I8_A0A1V4K6I8_PATFA_372326 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_A0A226PD57_A0A226PD57_COLVI_9014 are exactly identical! WARNING: Sequences tr_H9GMY7_H9GMY7_ANOCA_28377 and tr_A0A2Y9J7G9_A0A2Y9J7G9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q19937_Q19937_CAEEL_6239 and tr_G0NQX9_G0NQX9_CAEBE_135651 are exactly identical! WARNING: Sequences tr_Q19937_Q19937_CAEEL_6239 and tr_E3LQU1_E3LQU1_CAERE_31234 are exactly identical! WARNING: Sequences tr_Q19937_Q19937_CAEEL_6239 and tr_A8XCL0_A8XCL0_CAEBR_6238 are exactly identical! WARNING: Sequences tr_Q19937_Q19937_CAEEL_6239 and tr_A0A1I7TV46_A0A1I7TV46_9PELO_1561998 are exactly identical! WARNING: Sequences tr_Q19937_Q19937_CAEEL_6239 and tr_A0A261BPH2_A0A261BPH2_9PELO_1503980 are exactly identical! WARNING: Sequences tr_Q19937_Q19937_CAEEL_6239 and tr_A0A2G5UZU0_A0A2G5UZU0_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A0A2I3TMA6_A0A2I3TMA6_PANTR_9598 and tr_A0A2R9BWK3_A0A2R9BWK3_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6PXN9_F6PXN9_HORSE_9796 and tr_A0A287BJ14_A0A287BJ14_PIG_9823 are exactly identical! WARNING: Sequences tr_B0X098_B0X098_CULQU_7176 and tr_Q7PVF1_Q7PVF1_ANOGA_7165 are exactly identical! WARNING: Sequences tr_B0X098_B0X098_CULQU_7176 and tr_Q172Z6_Q172Z6_AEDAE_7159 are exactly identical! WARNING: Sequences tr_B0X098_B0X098_CULQU_7176 and tr_A0A084W6P0_A0A084W6P0_ANOSI_74873 are exactly identical! WARNING: Sequences tr_B0X098_B0X098_CULQU_7176 and tr_A0A1J1JAW3_A0A1J1JAW3_9DIPT_568069 are exactly identical! WARNING: Sequences tr_W5NVZ4_W5NVZ4_SHEEP_9940 and sp_Q4JM65_NANOG_BOVIN_9913 are exactly identical! WARNING: Sequences tr_I3JGX1_I3JGX1_ORENI_8128 and tr_H3D0R5_H3D0R5_TETNG_99883 are exactly identical! WARNING: Sequences tr_I3JGX1_I3JGX1_ORENI_8128 and tr_G3NN49_G3NN49_GASAC_69293 are exactly identical! WARNING: Sequences tr_I3JGX1_I3JGX1_ORENI_8128 and tr_A0A2I4C4E0_A0A2I4C4E0_9TELE_52670 are exactly identical! WARNING: Sequences tr_I3JGX1_I3JGX1_ORENI_8128 and tr_A0A2U9CRF1_A0A2U9CRF1_SCOMX_52904 are exactly identical! WARNING: Sequences tr_I3JGX5_I3JGX5_ORENI_8128 and tr_A0A2I4C4D7_A0A2I4C4D7_9TELE_52670 are exactly identical! WARNING: Sequences tr_I3JGX5_I3JGX5_ORENI_8128 and tr_A0A2U9CR45_A0A2U9CR45_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A3B5JZL9_A0A3B5JZL9_TAKRU_31033 and tr_A0A286XFM2_A0A286XFM2_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A3B5JZL9_A0A3B5JZL9_TAKRU_31033 and tr_G3NMF3_G3NMF3_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A3B5JZL9_A0A3B5JZL9_TAKRU_31033 and tr_H2ZXS6_H2ZXS6_LATCH_7897 are exactly identical! WARNING: Sequences tr_A0A3B5JZL9_A0A3B5JZL9_TAKRU_31033 and tr_L5K032_L5K032_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A3B5JZL9_A0A3B5JZL9_TAKRU_31033 and tr_A0A151M053_A0A151M053_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A2H2IPE3_A0A2H2IPE3_CAEJA_281687 and tr_K7HL85_K7HL85_CAEJA_281687 are exactly identical! WARNING: Sequences tr_A0A0K0JBL2_A0A0K0JBL2_BRUMA_6279 and tr_A0A044QJM2_A0A044QJM2_ONCVO_6282 are exactly identical! WARNING: Sequences tr_A0A0K0JBL2_A0A0K0JBL2_BRUMA_6279 and tr_A0A0N4TZH5_A0A0N4TZH5_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0JBL2_A0A0K0JBL2_BRUMA_6279 and tr_A0A0R3QP33_A0A0R3QP33_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A0K0JBL2_A0A0K0JBL2_BRUMA_6279 and tr_A0A182ES95_A0A182ES95_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A1D5QIR7_A0A1D5QIR7_MACMU_9544 and tr_A0A2I3M1P0_A0A2I3M1P0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5QIR7_A0A1D5QIR7_MACMU_9544 and tr_A0A2K6E639_A0A2K6E639_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GQZ2_F7GQZ2_MACMU_9544 and tr_A0A0D9RBP1_A0A0D9RBP1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7GQZ2_F7GQZ2_MACMU_9544 and tr_A0A0D9SC89_A0A0D9SC89_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G5BPN0_G5BPN0_HETGA_10181 and tr_A0A091CRZ7_A0A091CRZ7_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A7UTE6_A7UTE6_ANOGA_7165 and tr_Q16YQ0_Q16YQ0_AEDAE_7159 are exactly identical! WARNING: Sequences tr_A0A212F600_A0A212F600_DANPL_278856 and tr_A0A2A4JLY4_A0A2A4JLY4_HELVI_7102 are exactly identical! WARNING: Sequences tr_H0ZSB9_H0ZSB9_TAEGU_59729 and tr_A0A218ULD1_A0A218ULD1_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1B8XWD1_A0A1B8XWD1_XENTR_8364 and tr_F7AK05_F7AK05_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A1B8Y7E5_A0A1B8Y7E5_XENTR_8364 and tr_Q6GLH9_Q6GLH9_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A1B8Y7E5_A0A1B8Y7E5_XENTR_8364 and tr_A0A1L8FVV2_A0A1L8FVV2_XENLA_8355 are exactly identical! WARNING: Sequences tr_A4IIF9_A4IIF9_XENTR_8364 and tr_A0A3B1JNL2_A0A3B1JNL2_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A4IIF9_A4IIF9_XENTR_8364 and tr_A0A1L8FG03_A0A1L8FG03_XENLA_8355 are exactly identical! WARNING: Sequences tr_A4IIF9_A4IIF9_XENTR_8364 and tr_A0A1L8FLC4_A0A1L8FLC4_XENLA_8355 are exactly identical! WARNING: Sequences tr_G7PJQ0_G7PJQ0_MACFA_9541 and tr_A0A2K5ZJR4_A0A2K5ZJR4_MANLE_9568 are exactly identical! WARNING: Sequences tr_U3JUF9_U3JUF9_FICAL_59894 and tr_A0A218VDI4_A0A218VDI4_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3JXQ9_U3JXQ9_FICAL_59894 and tr_A0A091FEL8_A0A091FEL8_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A091CYT7_A0A091CYT7_FUKDA_885580 and tr_A0A2Y9E4E3_A0A2Y9E4E3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A151P6F3_A0A151P6F3_ALLMI_8496 and tr_A0A1U7SLL4_A0A1U7SLL4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151P6G6_A0A151P6G6_ALLMI_8496 and tr_A0A1U7SIZ2_A0A1U7SIZ2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0R3RGX2_A0A0R3RGX2_9BILA_1147741 and tr_A0A1I7VL58_A0A1I7VL58_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A091IVH9_A0A091IVH9_EGRGA_188379 and tr_A0A087QNJ2_A0A087QNJ2_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IVH9_A0A091IVH9_EGRGA_188379 and tr_A0A093G5R0_A0A093G5R0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091IVH9_A0A091IVH9_EGRGA_188379 and tr_A0A091IL22_A0A091IL22_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091IZ35_A0A091IZ35_EGRGA_188379 and tr_A0A087QNJ3_A0A087QNJ3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IZ35_A0A091IZ35_EGRGA_188379 and tr_A0A0A0A2P1_A0A0A0A2P1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091WBB6_A0A091WBB6_NIPNI_128390 and tr_A0A093I1J4_A0A093I1J4_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091WBB6_A0A091WBB6_NIPNI_128390 and tr_A0A091G7P7_A0A091G7P7_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091WBB6_A0A091WBB6_NIPNI_128390 and tr_A0A099ZYD2_A0A099ZYD2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A093HTY5_A0A093HTY5_STRCA_441894 and tr_A0A099Z698_A0A099Z698_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A087UN18_A0A087UN18_9ARAC_407821 and tr_A0A2J7PEG6_A0A2J7PEG6_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A087UN18_A0A087UN18_9ARAC_407821 and tr_A0A2P8Y8M8_A0A2P8Y8M8_BLAGE_6973 are exactly identical! WARNING: Sequences tr_A0A0V0SCE0_A0A0V0SCE0_9BILA_6336 and tr_A0A0V1CJ86_A0A0V1CJ86_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0SCE0_A0A0V0SCE0_9BILA_6336 and tr_A0A0V0X4J8_A0A0V0X4J8_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0SCE0_A0A0V0SCE0_9BILA_6336 and tr_A0A0V0V3W5_A0A0V0V3W5_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0SCE0_A0A0V0SCE0_9BILA_6336 and tr_A0A0V1KYZ2_A0A0V1KYZ2_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0SCE0_A0A0V0SCE0_9BILA_6336 and tr_A0A0V0ZH64_A0A0V0ZH64_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0SCE0_A0A0V0SCE0_9BILA_6336 and tr_A0A0V0XUG4_A0A0V0XUG4_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A0V0SCE0_A0A0V0SCE0_9BILA_6336 and tr_A0A0V1MKY9_A0A0V1MKY9_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0SCE0_A0A0V0SCE0_9BILA_6336 and tr_A0A0V1PD59_A0A0V1PD59_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0SCE0_A0A0V0SCE0_9BILA_6336 and tr_A0A0V1H019_A0A0V1H019_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V0SCE0_A0A0V0SCE0_9BILA_6336 and tr_A0A0V0TLT0_A0A0V0TLT0_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A2R2MMV0_A0A2R2MMV0_LINUN_7574 and tr_A0A2R2MMV8_A0A2R2MMV8_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3NIF8_A0A1S3NIF8_SALSA_8030 and tr_A0A060Y0P6_A0A060Y0P6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B5X679_B5X679_SALSA_8030 and tr_A0A060XRC9_A0A060XRC9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MU60_A0A226MU60_CALSU_9009 and tr_A0A226P406_A0A226P406_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NIL0_A0A226NIL0_CALSU_9009 and tr_A0A226P5Z2_A0A226P5Z2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0Q0U9_A0A2D0Q0U9_ICTPU_7998 and tr_A0A2D0Q1X4_A0A2D0Q1X4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0Q0U9_A0A2D0Q0U9_ICTPU_7998 and tr_A0A2D0Q417_A0A2D0Q417_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4AL15_A0A2U4AL15_TURTR_9739 and tr_A0A2Y9NE47_A0A2Y9NE47_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AL15_A0A2U4AL15_TURTR_9739 and tr_A0A2Y9NTL9_A0A2Y9NTL9_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AL15_A0A2U4AL15_TURTR_9739 and tr_A0A384BA60_A0A384BA60_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 683 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7.raxml.reduced.phy Alignment comprises 1 partitions and 63 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 63 / 63 Gaps: 0.51 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1000 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 63 / 5040 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -89081.302793] Initial branch length optimization [00:00:02 -73073.007356] Model parameter optimization (eps = 10.000000) [00:00:22 -72761.379142] AUTODETECT spr round 1 (radius: 5) [00:01:48 -35789.148810] AUTODETECT spr round 2 (radius: 10) [00:03:15 -21577.882645] AUTODETECT spr round 3 (radius: 15) [00:04:45 -15345.268817] AUTODETECT spr round 4 (radius: 20) [00:06:28 -11977.504123] AUTODETECT spr round 5 (radius: 25) [00:08:11 -9982.838910] SPR radius for FAST iterations: 25 (autodetect) [00:08:11 -9982.838910] Model parameter optimization (eps = 3.000000) [00:08:34 -9938.653200] FAST spr round 1 (radius: 25) [00:09:59 -7730.843846] FAST spr round 2 (radius: 25) [00:11:17 -7634.378206] FAST spr round 3 (radius: 25) [00:12:35 -7620.124682] FAST spr round 4 (radius: 25) [00:13:51 -7617.121378] FAST spr round 5 (radius: 25) [00:15:06 -7617.121299] Model parameter optimization (eps = 1.000000) [00:15:19 -7610.699362] SLOW spr round 1 (radius: 5) [00:16:35 -7609.057141] SLOW spr round 2 (radius: 5) [00:17:52 -7608.745463] SLOW spr round 3 (radius: 5) [00:19:07 -7608.745297] SLOW spr round 4 (radius: 10) [00:20:30 -7607.023046] SLOW spr round 5 (radius: 5) [00:22:01 -7605.585824] SLOW spr round 6 (radius: 5) [00:23:22 -7605.123880] SLOW spr round 7 (radius: 5) [00:24:38 -7605.122805] SLOW spr round 8 (radius: 10) [00:25:59 -7605.122690] SLOW spr round 9 (radius: 15) [00:27:27 -7602.011525] SLOW spr round 10 (radius: 5) [00:28:51 -7599.013067] SLOW spr round 11 (radius: 5) [00:30:07 -7599.013064] SLOW spr round 12 (radius: 10) [00:31:27 -7599.013064] SLOW spr round 13 (radius: 15) [00:32:53 -7599.013064] SLOW spr round 14 (radius: 20) [00:34:28 -7598.798168] SLOW spr round 15 (radius: 5) [00:35:52 -7598.798024] SLOW spr round 16 (radius: 10) [00:37:14 -7595.183144] SLOW spr round 17 (radius: 5) [00:38:31 -7595.183070] SLOW spr round 18 (radius: 10) [00:39:50 -7595.183068] SLOW spr round 19 (radius: 15) [00:41:15 -7594.830790] SLOW spr round 20 (radius: 5) [00:42:37 -7594.830538] SLOW spr round 21 (radius: 10) [00:43:56 -7594.830535] SLOW spr round 22 (radius: 15) [00:45:21 -7594.830535] SLOW spr round 23 (radius: 20) [00:46:56 -7594.830535] SLOW spr round 24 (radius: 25) [00:48:48 -7592.794333] SLOW spr round 25 (radius: 5) [00:50:13 -7592.794331] SLOW spr round 26 (radius: 10) [00:51:36 -7592.794330] SLOW spr round 27 (radius: 15) [00:53:02 -7591.231693] SLOW spr round 28 (radius: 5) [00:54:24 -7591.231255] SLOW spr round 29 (radius: 10) [00:55:45 -7591.231239] SLOW spr round 30 (radius: 15) [00:57:11 -7591.231239] SLOW spr round 31 (radius: 20) [00:58:46 -7591.231239] SLOW spr round 32 (radius: 25) [01:00:38 -7591.231239] Model parameter optimization (eps = 0.100000) [01:00:47] ML tree search #1, logLikelihood: -7591.128647 [01:00:47 -90455.325323] Initial branch length optimization [01:00:49 -74594.987518] Model parameter optimization (eps = 10.000000) [01:01:06 -74292.589797] AUTODETECT spr round 1 (radius: 5) [01:02:34 -33608.646750] AUTODETECT spr round 2 (radius: 10) [01:04:05 -20600.214847] AUTODETECT spr round 3 (radius: 15) [01:05:33 -15350.085891] AUTODETECT spr round 4 (radius: 20) [01:07:15 -12112.119173] AUTODETECT spr round 5 (radius: 25) [01:09:11 -10206.508994] SPR radius for FAST iterations: 25 (autodetect) [01:09:11 -10206.508994] Model parameter optimization (eps = 3.000000) [01:09:33 -10163.390053] FAST spr round 1 (radius: 25) [01:10:57 -7714.693297] FAST spr round 2 (radius: 25) [01:12:17 -7616.785364] FAST spr round 3 (radius: 25) [01:13:33 -7607.639038] FAST spr round 4 (radius: 25) [01:14:47 -7607.629136] Model parameter optimization (eps = 1.000000) [01:15:00 -7604.879574] SLOW spr round 1 (radius: 5) [01:16:16 -7603.153962] SLOW spr round 2 (radius: 5) [01:17:31 -7602.064744] SLOW spr round 3 (radius: 5) [01:18:47 -7602.061580] SLOW spr round 4 (radius: 10) [01:20:08 -7591.321834] SLOW spr round 5 (radius: 5) [01:21:29 -7588.550070] SLOW spr round 6 (radius: 5) [01:22:46 -7588.550014] SLOW spr round 7 (radius: 10) [01:24:06 -7588.549968] SLOW spr round 8 (radius: 15) [01:25:37 -7584.538704] SLOW spr round 9 (radius: 5) [01:27:01 -7584.153512] SLOW spr round 10 (radius: 5) [01:28:18 -7584.152039] SLOW spr round 11 (radius: 10) [01:29:38 -7584.083841] SLOW spr round 12 (radius: 15) [01:31:09 -7584.083754] SLOW spr round 13 (radius: 20) [01:32:53 -7584.083666] SLOW spr round 14 (radius: 25) [01:34:54 -7584.083663] Model parameter optimization (eps = 0.100000) [01:35:04] ML tree search #2, logLikelihood: -7583.819697 [01:35:04 -89537.443016] Initial branch length optimization [01:35:06 -74033.938287] Model parameter optimization (eps = 10.000000) [01:35:23 -73724.238166] AUTODETECT spr round 1 (radius: 5) [01:36:49 -33250.755637] AUTODETECT spr round 2 (radius: 10) [01:38:19 -19661.137291] AUTODETECT spr round 3 (radius: 15) [01:39:50 -13328.852743] AUTODETECT spr round 4 (radius: 20) [01:41:24 -10991.274127] AUTODETECT spr round 5 (radius: 25) [01:43:07 -10024.530928] SPR radius for FAST iterations: 25 (autodetect) [01:43:07 -10024.530928] Model parameter optimization (eps = 3.000000) [01:43:29 -9934.671249] FAST spr round 1 (radius: 25) [01:44:50 -7879.329040] FAST spr round 2 (radius: 25) [01:46:08 -7643.480878] FAST spr round 3 (radius: 25) [01:47:23 -7613.039653] FAST spr round 4 (radius: 25) [01:48:37 -7610.686977] FAST spr round 5 (radius: 25) [01:49:50 -7609.505577] FAST spr round 6 (radius: 25) [01:51:03 -7609.505568] Model parameter optimization (eps = 1.000000) [01:51:17 -7596.718416] SLOW spr round 1 (radius: 5) [01:52:32 -7596.553095] SLOW spr round 2 (radius: 5) [01:53:47 -7595.307971] SLOW spr round 3 (radius: 5) [01:55:02 -7595.306121] SLOW spr round 4 (radius: 10) [01:56:22 -7574.375899] SLOW spr round 5 (radius: 5) [01:57:42 -7569.008298] SLOW spr round 6 (radius: 5) [01:58:58 -7569.004222] SLOW spr round 7 (radius: 10) [02:00:18 -7564.466559] SLOW spr round 8 (radius: 5) [02:01:38 -7564.466307] SLOW spr round 9 (radius: 10) [02:02:59 -7564.466128] SLOW spr round 10 (radius: 15) [02:04:30 -7563.630262] SLOW spr round 11 (radius: 5) [02:05:54 -7563.574384] SLOW spr round 12 (radius: 10) [02:07:17 -7563.573670] SLOW spr round 13 (radius: 15) [02:08:46 -7563.573562] SLOW spr round 14 (radius: 20) [02:10:26 -7558.761383] SLOW spr round 15 (radius: 5) [02:11:54 -7550.934394] SLOW spr round 16 (radius: 5) [02:13:13 -7550.864993] SLOW spr round 17 (radius: 10) [02:14:33 -7550.864172] SLOW spr round 18 (radius: 15) [02:16:01 -7550.864136] SLOW spr round 19 (radius: 20) [02:17:39 -7550.864135] SLOW spr round 20 (radius: 25) [02:19:31 -7550.864135] Model parameter optimization (eps = 0.100000) [02:19:43] ML tree search #3, logLikelihood: -7548.333233 [02:19:43 -89261.506632] Initial branch length optimization [02:19:45 -73073.663041] Model parameter optimization (eps = 10.000000) [02:20:02 -72783.482854] AUTODETECT spr round 1 (radius: 5) [02:21:26 -36672.644801] AUTODETECT spr round 2 (radius: 10) [02:22:56 -21371.161061] AUTODETECT spr round 3 (radius: 15) [02:24:27 -15826.180767] AUTODETECT spr round 4 (radius: 20) [02:26:06 -12738.705014] AUTODETECT spr round 5 (radius: 25) [02:27:54 -10940.972835] SPR radius for FAST iterations: 25 (autodetect) [02:27:54 -10940.972835] Model parameter optimization (eps = 3.000000) [02:28:19 -10831.721738] FAST spr round 1 (radius: 25) [02:29:46 -8625.776826] FAST spr round 2 (radius: 25) [02:31:08 -8243.307110] FAST spr round 3 (radius: 25) [02:32:27 -8184.930336] FAST spr round 4 (radius: 25) [02:33:42 -8184.391415] FAST spr round 5 (radius: 25) [02:34:56 -8184.390822] Model parameter optimization (eps = 1.000000) [02:35:09 -8175.140378] SLOW spr round 1 (radius: 5) [02:36:26 -8172.168900] SLOW spr round 2 (radius: 5) [02:37:42 -8168.580693] SLOW spr round 3 (radius: 5) [02:38:58 -8168.354990] SLOW spr round 4 (radius: 5) [02:40:13 -8168.250108] SLOW spr round 5 (radius: 5) [02:41:28 -8168.249370] SLOW spr round 6 (radius: 10) [02:42:49 -8167.970854] SLOW spr round 7 (radius: 5) [02:44:09 -8165.451843] SLOW spr round 8 (radius: 5) [02:45:25 -8165.451666] SLOW spr round 9 (radius: 10) [02:46:45 -8165.451654] SLOW spr round 10 (radius: 15) [02:48:16 -8155.879288] SLOW spr round 11 (radius: 5) [02:49:41 -8155.807850] SLOW spr round 12 (radius: 10) [02:51:03 -8155.609923] SLOW spr round 13 (radius: 5) [02:52:22 -8155.609918] SLOW spr round 14 (radius: 10) [02:53:42 -8155.609918] SLOW spr round 15 (radius: 15) [02:55:12 -8155.609918] SLOW spr round 16 (radius: 20) [02:57:05 -8126.828046] SLOW spr round 17 (radius: 5) [02:58:35 -8034.394578] SLOW spr round 18 (radius: 5) [02:59:56 -8018.793971] SLOW spr round 19 (radius: 5) [03:01:13 -8015.916763] SLOW spr round 20 (radius: 5) [03:02:28 -8015.916230] SLOW spr round 21 (radius: 10) [03:03:48 -8015.916127] SLOW spr round 22 (radius: 15) [03:05:21 -7880.616934] SLOW spr round 23 (radius: 5) [03:06:48 -7849.401508] SLOW spr round 24 (radius: 5) [03:08:07 -7848.707935] SLOW spr round 25 (radius: 5) [03:09:24 -7848.574512] SLOW spr round 26 (radius: 5) [03:10:40 -7848.573290] SLOW spr round 27 (radius: 10) [03:12:00 -7847.943050] SLOW spr round 28 (radius: 5) [03:13:20 -7847.943050] SLOW spr round 29 (radius: 10) [03:14:40 -7847.943050] SLOW spr round 30 (radius: 15) [03:16:11 -7847.943050] SLOW spr round 31 (radius: 20) [03:18:02 -7728.691798] SLOW spr round 32 (radius: 5) [03:19:29 -7710.067750] SLOW spr round 33 (radius: 5) [03:20:49 -7707.965041] SLOW spr round 34 (radius: 5) [03:22:05 -7707.963372] SLOW spr round 35 (radius: 10) [03:23:23 -7707.963258] SLOW spr round 36 (radius: 15) [03:24:52 -7706.461724] SLOW spr round 37 (radius: 5) [03:26:17 -7616.870224] SLOW spr round 38 (radius: 5) [03:27:35 -7565.334757] SLOW spr round 39 (radius: 5) [03:28:51 -7564.774636] SLOW spr round 40 (radius: 5) [03:30:04 -7564.774574] SLOW spr round 41 (radius: 10) [03:31:22 -7564.774554] SLOW spr round 42 (radius: 15) [03:32:48 -7564.774553] SLOW spr round 43 (radius: 20) [03:34:28 -7564.774550] SLOW spr round 44 (radius: 25) [03:36:26 -7562.931480] SLOW spr round 45 (radius: 5) [03:37:50 -7562.931023] SLOW spr round 46 (radius: 10) [03:39:13 -7559.148773] SLOW spr round 47 (radius: 5) [03:40:31 -7557.623371] SLOW spr round 48 (radius: 5) [03:41:44 -7557.623294] SLOW spr round 49 (radius: 10) [03:43:02 -7557.623292] SLOW spr round 50 (radius: 15) [03:44:28 -7557.623292] SLOW spr round 51 (radius: 20) [03:46:08 -7557.623292] SLOW spr round 52 (radius: 25) [03:48:07 -7557.623292] Model parameter optimization (eps = 0.100000) [03:48:23] ML tree search #4, logLikelihood: -7553.421354 [03:48:24 -89906.321504] Initial branch length optimization [03:48:26 -74324.106732] Model parameter optimization (eps = 10.000000) [03:48:44 -74032.651544] AUTODETECT spr round 1 (radius: 5) [03:50:10 -35177.476686] AUTODETECT spr round 2 (radius: 10) [03:51:40 -19631.460589] AUTODETECT spr round 3 (radius: 15) [03:53:11 -13905.613450] AUTODETECT spr round 4 (radius: 20) [03:54:50 -10528.870198] AUTODETECT spr round 5 (radius: 25) [03:56:32 -9776.853989] SPR radius for FAST iterations: 25 (autodetect) [03:56:32 -9776.853989] Model parameter optimization (eps = 3.000000) [03:56:53 -9738.746209] FAST spr round 1 (radius: 25) [03:58:17 -8183.329419] FAST spr round 2 (radius: 25) [03:59:36 -8036.432709] FAST spr round 3 (radius: 25) [04:00:53 -8003.892753] FAST spr round 4 (radius: 25) [04:02:07 -8001.741234] FAST spr round 5 (radius: 25) [04:03:21 -8001.740828] Model parameter optimization (eps = 1.000000) [04:03:31 -8000.345190] SLOW spr round 1 (radius: 5) [04:04:49 -7998.753907] SLOW spr round 2 (radius: 5) [04:06:07 -7994.283785] SLOW spr round 3 (radius: 5) [04:07:23 -7994.282854] SLOW spr round 4 (radius: 10) [04:08:45 -7977.094198] SLOW spr round 5 (radius: 5) [04:10:08 -7973.546697] SLOW spr round 6 (radius: 5) [04:11:25 -7973.191210] SLOW spr round 7 (radius: 5) [04:12:41 -7973.190983] SLOW spr round 8 (radius: 10) [04:14:01 -7973.190982] SLOW spr round 9 (radius: 15) [04:15:36 -7830.907575] SLOW spr round 10 (radius: 5) [04:17:04 -7791.092545] SLOW spr round 11 (radius: 5) [04:18:25 -7786.444743] SLOW spr round 12 (radius: 5) [04:19:42 -7785.971233] SLOW spr round 13 (radius: 5) [04:20:57 -7785.971232] SLOW spr round 14 (radius: 10) [04:22:19 -7781.973361] SLOW spr round 15 (radius: 5) [04:23:40 -7781.973038] SLOW spr round 16 (radius: 10) [04:25:01 -7781.108023] SLOW spr round 17 (radius: 5) [04:26:22 -7781.107997] SLOW spr round 18 (radius: 10) [04:27:43 -7781.107997] SLOW spr round 19 (radius: 15) [04:29:16 -7745.619840] SLOW spr round 20 (radius: 5) [04:30:44 -7738.240831] SLOW spr round 21 (radius: 5) [04:32:04 -7736.205741] SLOW spr round 22 (radius: 5) [04:33:20 -7735.518141] SLOW spr round 23 (radius: 5) [04:34:36 -7735.517628] SLOW spr round 24 (radius: 10) [04:35:56 -7735.517620] SLOW spr round 25 (radius: 15) [04:37:28 -7735.517620] SLOW spr round 26 (radius: 20) [04:39:19 -7727.484285] SLOW spr round 27 (radius: 5) [04:40:46 -7725.204532] SLOW spr round 28 (radius: 5) [04:42:06 -7724.622300] SLOW spr round 29 (radius: 5) [04:43:24 -7724.621767] SLOW spr round 30 (radius: 10) [04:44:43 -7724.621754] SLOW spr round 31 (radius: 15) [04:46:12 -7724.621751] SLOW spr round 32 (radius: 20) [04:48:00 -7724.621751] SLOW spr round 33 (radius: 25) [04:50:11 -7641.967401] SLOW spr round 34 (radius: 5) [04:51:40 -7594.316991] SLOW spr round 35 (radius: 5) [04:53:00 -7593.714612] SLOW spr round 36 (radius: 5) [04:54:16 -7593.298181] SLOW spr round 37 (radius: 5) [04:55:31 -7593.298153] SLOW spr round 38 (radius: 10) [04:56:50 -7593.298152] SLOW spr round 39 (radius: 15) [04:58:18 -7593.233977] SLOW spr round 40 (radius: 20) [05:00:02 -7592.738184] SLOW spr round 41 (radius: 5) [05:01:28 -7592.146437] SLOW spr round 42 (radius: 5) [05:02:45 -7592.146436] SLOW spr round 43 (radius: 10) [05:04:04 -7592.146436] SLOW spr round 44 (radius: 15) [05:05:32 -7592.146436] SLOW spr round 45 (radius: 20) [05:07:17 -7592.146436] SLOW spr round 46 (radius: 25) [05:09:33 -7592.146436] Model parameter optimization (eps = 0.100000) [05:09:39] ML tree search #5, logLikelihood: -7592.107695 [05:09:39 -88014.280261] Initial branch length optimization [05:09:41 -72206.721196] Model parameter optimization (eps = 10.000000) [05:10:00 -71905.805321] AUTODETECT spr round 1 (radius: 5) [05:11:27 -36345.334218] AUTODETECT spr round 2 (radius: 10) [05:12:57 -21185.957334] AUTODETECT spr round 3 (radius: 15) [05:14:28 -14664.760652] AUTODETECT spr round 4 (radius: 20) [05:16:04 -12778.638929] AUTODETECT spr round 5 (radius: 25) [05:17:54 -10837.841775] SPR radius for FAST iterations: 25 (autodetect) [05:17:54 -10837.841775] Model parameter optimization (eps = 3.000000) [05:18:15 -10784.819120] FAST spr round 1 (radius: 25) [05:19:42 -8275.466282] FAST spr round 2 (radius: 25) [05:21:01 -7720.011780] FAST spr round 3 (radius: 25) [05:22:18 -7648.151497] FAST spr round 4 (radius: 25) [05:23:34 -7645.203545] FAST spr round 5 (radius: 25) [05:24:49 -7643.163883] FAST spr round 6 (radius: 25) [05:26:02 -7643.061356] FAST spr round 7 (radius: 25) [05:27:16 -7643.061203] Model parameter optimization (eps = 1.000000) [05:27:31 -7618.627372] SLOW spr round 1 (radius: 5) [05:28:47 -7613.320415] SLOW spr round 2 (radius: 5) [05:30:03 -7604.913867] SLOW spr round 3 (radius: 5) [05:31:19 -7585.268036] SLOW spr round 4 (radius: 5) [05:32:34 -7585.266599] SLOW spr round 5 (radius: 10) [05:33:52 -7583.979752] SLOW spr round 6 (radius: 5) [05:35:10 -7583.978314] SLOW spr round 7 (radius: 10) [05:36:30 -7582.191418] SLOW spr round 8 (radius: 5) [05:37:49 -7581.903268] SLOW spr round 9 (radius: 5) [05:39:04 -7581.902069] SLOW spr round 10 (radius: 10) [05:40:23 -7581.902029] SLOW spr round 11 (radius: 15) [05:41:53 -7561.154846] SLOW spr round 12 (radius: 5) [05:43:17 -7559.499511] SLOW spr round 13 (radius: 5) [05:44:32 -7559.499511] SLOW spr round 14 (radius: 10) [05:45:51 -7559.499511] SLOW spr round 15 (radius: 15) [05:47:20 -7559.499511] SLOW spr round 16 (radius: 20) [05:49:05 -7559.062793] SLOW spr round 17 (radius: 5) [05:50:29 -7559.062777] SLOW spr round 18 (radius: 10) [05:51:50 -7559.062777] SLOW spr round 19 (radius: 15) [05:53:18 -7559.062777] SLOW spr round 20 (radius: 20) [05:55:03 -7559.062777] SLOW spr round 21 (radius: 25) [05:57:14 -7559.062777] Model parameter optimization (eps = 0.100000) [05:57:22] ML tree search #6, logLikelihood: -7558.256477 [05:57:22 -89001.828678] Initial branch length optimization [05:57:24 -73243.513141] Model parameter optimization (eps = 10.000000) [05:57:41 -72980.101384] AUTODETECT spr round 1 (radius: 5) [05:59:08 -35115.100626] AUTODETECT spr round 2 (radius: 10) [06:00:44 -21456.435287] AUTODETECT spr round 3 (radius: 15) [06:02:16 -15055.961307] AUTODETECT spr round 4 (radius: 20) [06:03:52 -12774.304567] AUTODETECT spr round 5 (radius: 25) [06:05:27 -11657.259633] SPR radius for FAST iterations: 25 (autodetect) [06:05:27 -11657.259633] Model parameter optimization (eps = 3.000000) [06:05:47 -11569.877887] FAST spr round 1 (radius: 25) [06:07:17 -9188.841267] FAST spr round 2 (radius: 25) [06:08:36 -8833.774122] FAST spr round 3 (radius: 25) [06:09:54 -8772.173090] FAST spr round 4 (radius: 25) [06:11:13 -8675.260433] FAST spr round 5 (radius: 25) [06:12:32 -8493.522746] FAST spr round 6 (radius: 25) [06:13:47 -8422.169858] FAST spr round 7 (radius: 25) [06:15:00 -8420.856861] FAST spr round 8 (radius: 25) [06:16:14 -8420.853678] Model parameter optimization (eps = 1.000000) [06:16:25 -8419.011310] SLOW spr round 1 (radius: 5) [06:17:41 -8413.722801] SLOW spr round 2 (radius: 5) [06:18:57 -8412.711695] SLOW spr round 3 (radius: 5) [06:20:13 -8412.709716] SLOW spr round 4 (radius: 10) [06:21:34 -8411.288306] SLOW spr round 5 (radius: 5) [06:22:54 -8411.286276] SLOW spr round 6 (radius: 10) [06:24:15 -8410.825094] SLOW spr round 7 (radius: 5) [06:25:36 -8410.390860] SLOW spr round 8 (radius: 5) [06:26:52 -8410.390789] SLOW spr round 9 (radius: 10) [06:28:13 -8410.390684] SLOW spr round 10 (radius: 15) [06:29:46 -8085.454887] SLOW spr round 11 (radius: 5) [06:31:15 -7956.510962] SLOW spr round 12 (radius: 5) [06:32:34 -7930.987429] SLOW spr round 13 (radius: 5) [06:33:51 -7930.555564] SLOW spr round 14 (radius: 5) [06:35:05 -7930.555447] SLOW spr round 15 (radius: 10) [06:36:27 -7928.141170] SLOW spr round 16 (radius: 5) [06:37:47 -7928.140812] SLOW spr round 17 (radius: 10) [06:39:08 -7839.820561] SLOW spr round 18 (radius: 5) [06:40:28 -7809.306729] SLOW spr round 19 (radius: 5) [06:41:45 -7773.089657] SLOW spr round 20 (radius: 5) [06:43:01 -7728.585969] SLOW spr round 21 (radius: 5) [06:44:16 -7728.585202] SLOW spr round 22 (radius: 10) [06:45:37 -7685.779391] SLOW spr round 23 (radius: 5) [06:46:57 -7659.377546] SLOW spr round 24 (radius: 5) [06:48:12 -7659.377481] SLOW spr round 25 (radius: 10) [06:49:32 -7659.377422] SLOW spr round 26 (radius: 15) [06:51:03 -7610.336295] SLOW spr round 27 (radius: 5) [06:52:28 -7603.048981] SLOW spr round 28 (radius: 5) [06:53:45 -7602.604991] SLOW spr round 29 (radius: 5) [06:54:59 -7602.604844] SLOW spr round 30 (radius: 10) [06:56:18 -7602.604702] SLOW spr round 31 (radius: 15) [06:57:47 -7602.604655] SLOW spr round 32 (radius: 20) [06:59:26 -7582.693493] SLOW spr round 33 (radius: 5) [07:00:55 -7577.804754] SLOW spr round 34 (radius: 5) [07:02:14 -7577.803726] SLOW spr round 35 (radius: 10) [07:03:34 -7566.198123] SLOW spr round 36 (radius: 5) [07:04:54 -7566.196947] SLOW spr round 37 (radius: 10) [07:06:14 -7566.196849] SLOW spr round 38 (radius: 15) [07:07:43 -7566.196816] SLOW spr round 39 (radius: 20) [07:09:22 -7565.388806] SLOW spr round 40 (radius: 5) [07:10:47 -7565.388794] SLOW spr round 41 (radius: 10) [07:12:10 -7565.388754] SLOW spr round 42 (radius: 15) [07:13:39 -7565.388737] SLOW spr round 43 (radius: 20) [07:15:16 -7565.388736] SLOW spr round 44 (radius: 25) [07:17:05 -7565.388735] Model parameter optimization (eps = 0.100000) [07:17:19] ML tree search #7, logLikelihood: -7562.157609 [07:17:19 -88927.202937] Initial branch length optimization [07:17:21 -73268.341705] Model parameter optimization (eps = 10.000000) [07:17:39 -72971.538231] AUTODETECT spr round 1 (radius: 5) [07:19:06 -35560.799247] AUTODETECT spr round 2 (radius: 10) [07:20:42 -20175.777689] AUTODETECT spr round 3 (radius: 15) [07:22:13 -14156.500912] AUTODETECT spr round 4 (radius: 20) [07:23:57 -10785.389953] AUTODETECT spr round 5 (radius: 25) [07:26:01 -9411.155842] SPR radius for FAST iterations: 25 (autodetect) [07:26:01 -9411.155842] Model parameter optimization (eps = 3.000000) [07:26:16 -9371.812329] FAST spr round 1 (radius: 25) [07:27:40 -7862.320517] FAST spr round 2 (radius: 25) [07:28:57 -7673.994658] FAST spr round 3 (radius: 25) [07:30:13 -7633.276349] FAST spr round 4 (radius: 25) [07:31:26 -7632.520563] FAST spr round 5 (radius: 25) [07:32:39 -7632.520556] Model parameter optimization (eps = 1.000000) [07:33:07 -7597.375992] SLOW spr round 1 (radius: 5) [07:34:22 -7594.089661] SLOW spr round 2 (radius: 5) [07:35:38 -7593.474156] SLOW spr round 3 (radius: 5) [07:36:53 -7593.473488] SLOW spr round 4 (radius: 10) [07:38:15 -7588.018023] SLOW spr round 5 (radius: 5) [07:39:36 -7569.252280] SLOW spr round 6 (radius: 5) [07:40:54 -7568.264290] SLOW spr round 7 (radius: 5) [07:42:10 -7568.264231] SLOW spr round 8 (radius: 10) [07:43:33 -7568.128840] SLOW spr round 9 (radius: 5) [07:44:53 -7568.128767] SLOW spr round 10 (radius: 10) [07:46:15 -7568.128647] SLOW spr round 11 (radius: 15) [07:47:43 -7566.548811] SLOW spr round 12 (radius: 5) [07:49:09 -7565.235789] SLOW spr round 13 (radius: 5) [07:50:27 -7565.235006] SLOW spr round 14 (radius: 10) [07:51:49 -7565.234920] SLOW spr round 15 (radius: 15) [07:53:18 -7565.234819] SLOW spr round 16 (radius: 20) [07:55:00 -7565.234814] SLOW spr round 17 (radius: 25) [07:57:02 -7562.997375] SLOW spr round 18 (radius: 5) [07:58:30 -7561.677850] SLOW spr round 19 (radius: 5) [07:59:51 -7561.587580] SLOW spr round 20 (radius: 10) [08:01:12 -7561.559065] SLOW spr round 21 (radius: 15) [08:02:39 -7561.558943] SLOW spr round 22 (radius: 20) [08:04:18 -7561.558926] SLOW spr round 23 (radius: 25) [08:06:13 -7561.558924] Model parameter optimization (eps = 0.100000) [08:06:23] ML tree search #8, logLikelihood: -7561.369910 [08:06:23 -89829.130229] Initial branch length optimization [08:06:24 -74438.966177] Model parameter optimization (eps = 10.000000) [08:06:40 -74073.696046] AUTODETECT spr round 1 (radius: 5) [08:08:06 -34280.535112] AUTODETECT spr round 2 (radius: 10) [08:09:38 -19949.663215] AUTODETECT spr round 3 (radius: 15) [08:11:05 -14469.158213] AUTODETECT spr round 4 (radius: 20) [08:12:47 -11021.187820] AUTODETECT spr round 5 (radius: 25) [08:14:24 -9865.463357] SPR radius for FAST iterations: 25 (autodetect) [08:14:24 -9865.463357] Model parameter optimization (eps = 3.000000) [08:14:38 -9840.374492] FAST spr round 1 (radius: 25) [08:16:00 -7835.279643] FAST spr round 2 (radius: 25) [08:17:17 -7640.142737] FAST spr round 3 (radius: 25) [08:18:33 -7611.276068] FAST spr round 4 (radius: 25) [08:19:48 -7607.359983] FAST spr round 5 (radius: 25) [08:21:02 -7607.359975] Model parameter optimization (eps = 1.000000) [08:21:10 -7604.562341] SLOW spr round 1 (radius: 5) [08:22:25 -7603.409912] SLOW spr round 2 (radius: 5) [08:23:41 -7603.406744] SLOW spr round 3 (radius: 10) [08:25:02 -7602.676125] SLOW spr round 4 (radius: 5) [08:26:21 -7602.674100] SLOW spr round 5 (radius: 10) [08:27:40 -7602.353025] SLOW spr round 6 (radius: 5) [08:28:58 -7601.802481] SLOW spr round 7 (radius: 5) [08:30:12 -7601.802019] SLOW spr round 8 (radius: 10) [08:31:30 -7601.801965] SLOW spr round 9 (radius: 15) [08:33:02 -7595.908631] SLOW spr round 10 (radius: 5) [08:34:24 -7595.908575] SLOW spr round 11 (radius: 10) [08:35:45 -7595.847652] SLOW spr round 12 (radius: 15) [08:37:16 -7595.847544] SLOW spr round 13 (radius: 20) [08:39:05 -7595.847542] SLOW spr round 14 (radius: 25) [08:41:28 -7595.391345] SLOW spr round 15 (radius: 5) [08:42:54 -7595.391340] SLOW spr round 16 (radius: 10) [08:44:19 -7594.773185] SLOW spr round 17 (radius: 5) [08:45:37 -7594.773143] SLOW spr round 18 (radius: 10) [08:46:57 -7594.696073] SLOW spr round 19 (radius: 15) [08:48:27 -7594.695954] SLOW spr round 20 (radius: 20) [08:50:12 -7592.748744] SLOW spr round 21 (radius: 5) [08:51:40 -7590.761485] SLOW spr round 22 (radius: 5) [08:52:57 -7590.761453] SLOW spr round 23 (radius: 10) [08:54:17 -7590.761452] SLOW spr round 24 (radius: 15) [08:55:47 -7590.761452] SLOW spr round 25 (radius: 20) [08:57:30 -7590.761452] SLOW spr round 26 (radius: 25) [08:59:39 -7590.761452] Model parameter optimization (eps = 0.100000) [08:59:43] ML tree search #9, logLikelihood: -7590.719232 [08:59:43 -89802.068239] Initial branch length optimization [08:59:45 -73730.906131] Model parameter optimization (eps = 10.000000) [09:00:00 -73420.402406] AUTODETECT spr round 1 (radius: 5) [09:01:26 -34535.395762] AUTODETECT spr round 2 (radius: 10) [09:02:55 -22591.944811] AUTODETECT spr round 3 (radius: 15) [09:04:24 -16085.107535] AUTODETECT spr round 4 (radius: 20) [09:06:04 -13171.493326] AUTODETECT spr round 5 (radius: 25) [09:07:50 -10775.131758] SPR radius for FAST iterations: 25 (autodetect) [09:07:50 -10775.131758] Model parameter optimization (eps = 3.000000) [09:08:12 -10678.623989] FAST spr round 1 (radius: 25) [09:09:35 -7972.019959] FAST spr round 2 (radius: 25) [09:10:53 -7778.762175] FAST spr round 3 (radius: 25) [09:12:10 -7743.248909] FAST spr round 4 (radius: 25) [09:13:23 -7742.234022] FAST spr round 5 (radius: 25) [09:14:35 -7742.232823] Model parameter optimization (eps = 1.000000) [09:14:57 -7726.607138] SLOW spr round 1 (radius: 5) [09:16:12 -7725.101725] SLOW spr round 2 (radius: 5) [09:17:27 -7720.773794] SLOW spr round 3 (radius: 5) [09:18:43 -7720.772969] SLOW spr round 4 (radius: 10) [09:20:06 -7710.498516] SLOW spr round 5 (radius: 5) [09:21:27 -7702.566952] SLOW spr round 6 (radius: 5) [09:22:44 -7697.011227] SLOW spr round 7 (radius: 5) [09:24:01 -7697.001551] SLOW spr round 8 (radius: 10) [09:25:23 -7694.524927] SLOW spr round 9 (radius: 5) [09:26:44 -7694.524723] SLOW spr round 10 (radius: 10) [09:28:07 -7694.524595] SLOW spr round 11 (radius: 15) [09:29:38 -7673.579094] SLOW spr round 12 (radius: 5) [09:31:05 -7667.728972] SLOW spr round 13 (radius: 5) [09:32:23 -7667.217658] SLOW spr round 14 (radius: 5) [09:33:39 -7667.216329] SLOW spr round 15 (radius: 10) [09:35:00 -7667.216235] SLOW spr round 16 (radius: 15) [09:36:32 -7666.944251] SLOW spr round 17 (radius: 5) [09:37:57 -7666.944141] SLOW spr round 18 (radius: 10) [09:39:21 -7666.944071] SLOW spr round 19 (radius: 15) [09:40:52 -7666.944026] SLOW spr round 20 (radius: 20) [09:42:45 -7666.944021] SLOW spr round 21 (radius: 25) [09:45:07 -7666.944021] Model parameter optimization (eps = 0.100000) [09:45:13] ML tree search #10, logLikelihood: -7666.623109 [09:45:14 -89503.629502] Initial branch length optimization [09:45:16 -73749.630433] Model parameter optimization (eps = 10.000000) [09:45:38 -73453.426014] AUTODETECT spr round 1 (radius: 5) [09:47:05 -37614.588724] AUTODETECT spr round 2 (radius: 10) [09:48:39 -21515.158969] AUTODETECT spr round 3 (radius: 15) [09:50:07 -15238.170633] AUTODETECT spr round 4 (radius: 20) [09:51:47 -12616.785158] AUTODETECT spr round 5 (radius: 25) [09:53:31 -11152.208964] SPR radius for FAST iterations: 25 (autodetect) [09:53:31 -11152.208964] Model parameter optimization (eps = 3.000000) [09:53:49 -11108.673000] FAST spr round 1 (radius: 25) [09:55:14 -8418.009833] FAST spr round 2 (radius: 25) [09:56:33 -7968.738240] FAST spr round 3 (radius: 25) [09:57:52 -7941.135786] FAST spr round 4 (radius: 25) [09:59:11 -7897.674724] FAST spr round 5 (radius: 25) [10:00:27 -7808.680537] FAST spr round 6 (radius: 25) [10:01:45 -7773.593746] FAST spr round 7 (radius: 25) [10:03:00 -7753.133284] FAST spr round 8 (radius: 25) [10:04:17 -7713.467832] FAST spr round 9 (radius: 25) [10:05:33 -7702.953101] FAST spr round 10 (radius: 25) [10:06:47 -7702.951898] Model parameter optimization (eps = 1.000000) [10:07:00 -7695.515085] SLOW spr round 1 (radius: 5) [10:08:16 -7693.240591] SLOW spr round 2 (radius: 5) [10:09:33 -7673.038140] SLOW spr round 3 (radius: 5) [10:10:49 -7668.100704] SLOW spr round 4 (radius: 5) [10:12:04 -7668.100617] SLOW spr round 5 (radius: 10) [10:13:26 -7660.619143] SLOW spr round 6 (radius: 5) [10:14:48 -7653.733400] SLOW spr round 7 (radius: 5) [10:16:05 -7653.383144] SLOW spr round 8 (radius: 5) [10:17:19 -7653.381587] SLOW spr round 9 (radius: 10) [10:18:42 -7653.045666] SLOW spr round 10 (radius: 5) [10:20:02 -7653.042514] SLOW spr round 11 (radius: 10) [10:21:24 -7653.041416] SLOW spr round 12 (radius: 15) [10:22:55 -7651.941129] SLOW spr round 13 (radius: 5) [10:24:20 -7651.940697] SLOW spr round 14 (radius: 10) [10:25:43 -7651.531158] SLOW spr round 15 (radius: 5) [10:27:02 -7651.530309] SLOW spr round 16 (radius: 10) [10:28:24 -7651.530230] SLOW spr round 17 (radius: 15) [10:29:57 -7651.530216] SLOW spr round 18 (radius: 20) [10:31:53 -7646.423524] SLOW spr round 19 (radius: 5) [10:33:19 -7646.423508] SLOW spr round 20 (radius: 10) [10:34:46 -7646.423506] SLOW spr round 21 (radius: 15) [10:36:20 -7646.423496] SLOW spr round 22 (radius: 20) [10:38:14 -7646.423494] SLOW spr round 23 (radius: 25) [10:40:29 -7641.721906] SLOW spr round 24 (radius: 5) [10:41:55 -7641.721842] SLOW spr round 25 (radius: 10) [10:43:22 -7639.375334] SLOW spr round 26 (radius: 5) [10:44:42 -7585.296483] SLOW spr round 27 (radius: 5) [10:45:57 -7585.295293] SLOW spr round 28 (radius: 10) [10:47:19 -7585.295066] SLOW spr round 29 (radius: 15) [10:48:53 -7584.982494] SLOW spr round 30 (radius: 5) [10:50:18 -7584.982205] SLOW spr round 31 (radius: 10) [10:51:40 -7584.982180] SLOW spr round 32 (radius: 15) [10:53:13 -7584.982176] SLOW spr round 33 (radius: 20) [10:55:03 -7584.982174] SLOW spr round 34 (radius: 25) [10:57:17 -7584.982173] Model parameter optimization (eps = 0.100000) [10:57:22] ML tree search #11, logLikelihood: -7584.903304 [10:57:22 -89695.971822] Initial branch length optimization [10:57:25 -73621.124225] Model parameter optimization (eps = 10.000000) [10:57:41 -73322.600552] AUTODETECT spr round 1 (radius: 5) [10:59:08 -35461.992661] AUTODETECT spr round 2 (radius: 10) [11:00:43 -21813.982986] AUTODETECT spr round 3 (radius: 15) [11:02:14 -14292.093846] AUTODETECT spr round 4 (radius: 20) [11:03:50 -12397.450020] AUTODETECT spr round 5 (radius: 25) [11:05:32 -11020.036598] SPR radius for FAST iterations: 25 (autodetect) [11:05:32 -11020.036598] Model parameter optimization (eps = 3.000000) [11:05:55 -10936.563388] FAST spr round 1 (radius: 25) [11:07:20 -8797.023862] FAST spr round 2 (radius: 25) [11:08:39 -8382.942961] FAST spr round 3 (radius: 25) [11:09:57 -8158.197656] FAST spr round 4 (radius: 25) [11:11:13 -7920.167591] FAST spr round 5 (radius: 25) [11:12:31 -7786.759142] FAST spr round 6 (radius: 25) [11:13:45 -7783.309427] FAST spr round 7 (radius: 25) [11:14:58 -7783.309226] Model parameter optimization (eps = 1.000000) [11:15:08 -7779.691131] SLOW spr round 1 (radius: 5) [11:16:23 -7773.168365] SLOW spr round 2 (radius: 5) [11:17:39 -7757.653394] SLOW spr round 3 (radius: 5) [11:18:56 -7756.077246] SLOW spr round 4 (radius: 5) [11:20:12 -7756.076167] SLOW spr round 5 (radius: 10) [11:21:34 -7694.471139] SLOW spr round 6 (radius: 5) [11:22:56 -7690.399067] SLOW spr round 7 (radius: 5) [11:24:12 -7690.397261] SLOW spr round 8 (radius: 10) [11:25:33 -7689.836777] SLOW spr round 9 (radius: 5) [11:26:50 -7689.836628] SLOW spr round 10 (radius: 10) [11:28:11 -7689.836612] SLOW spr round 11 (radius: 15) [11:29:42 -7658.974209] SLOW spr round 12 (radius: 5) [11:31:06 -7658.872111] SLOW spr round 13 (radius: 5) [11:32:24 -7658.871577] SLOW spr round 14 (radius: 10) [11:33:44 -7658.871573] SLOW spr round 15 (radius: 15) [11:35:14 -7634.602840] SLOW spr round 16 (radius: 5) [11:36:41 -7557.424385] SLOW spr round 17 (radius: 5) [11:37:59 -7557.424368] SLOW spr round 18 (radius: 10) [11:39:18 -7557.424362] SLOW spr round 19 (radius: 15) [11:40:46 -7557.424362] SLOW spr round 20 (radius: 20) [11:42:31 -7557.424362] SLOW spr round 21 (radius: 25) [11:44:38 -7552.134041] SLOW spr round 22 (radius: 5) [11:46:05 -7552.133927] SLOW spr round 23 (radius: 10) [11:47:29 -7551.962845] SLOW spr round 24 (radius: 5) [11:48:48 -7551.962822] SLOW spr round 25 (radius: 10) [11:50:08 -7551.962820] SLOW spr round 26 (radius: 15) [11:51:37 -7551.962820] SLOW spr round 27 (radius: 20) [11:53:21 -7551.962820] SLOW spr round 28 (radius: 25) [11:55:24 -7551.962820] Model parameter optimization (eps = 0.100000) [11:55:35] ML tree search #12, logLikelihood: -7550.615803 [11:55:35 -89077.156070] Initial branch length optimization [11:55:36 -73845.069926] Model parameter optimization (eps = 10.000000) [11:55:55 -73514.422432] AUTODETECT spr round 1 (radius: 5) [11:57:21 -35191.166824] AUTODETECT spr round 2 (radius: 10) [11:58:57 -22537.510720] AUTODETECT spr round 3 (radius: 15) [12:00:28 -14843.837062] AUTODETECT spr round 4 (radius: 20) [12:02:05 -11991.252702] AUTODETECT spr round 5 (radius: 25) [12:03:46 -11305.865184] SPR radius for FAST iterations: 25 (autodetect) [12:03:46 -11305.865184] Model parameter optimization (eps = 3.000000) [12:04:07 -11215.022312] FAST spr round 1 (radius: 25) [12:05:33 -9046.468888] FAST spr round 2 (radius: 25) [12:06:53 -8672.801390] FAST spr round 3 (radius: 25) [12:08:14 -8467.610093] FAST spr round 4 (radius: 25) [12:09:31 -8431.600015] FAST spr round 5 (radius: 25) [12:10:47 -8431.597294] Model parameter optimization (eps = 1.000000) [12:10:58 -8426.874276] SLOW spr round 1 (radius: 5) [12:12:13 -8426.645636] SLOW spr round 2 (radius: 5) [12:13:29 -8426.643564] SLOW spr round 3 (radius: 10) [12:14:51 -8210.049096] SLOW spr round 4 (radius: 5) [12:16:13 -8031.340755] SLOW spr round 5 (radius: 5) [12:17:30 -7964.455030] SLOW spr round 6 (radius: 5) [12:18:46 -7920.516244] SLOW spr round 7 (radius: 5) [12:20:03 -7885.534892] SLOW spr round 8 (radius: 5) [12:21:20 -7862.250595] SLOW spr round 9 (radius: 5) [12:22:35 -7862.250488] SLOW spr round 10 (radius: 10) [12:23:57 -7846.687272] SLOW spr round 11 (radius: 5) [12:25:19 -7836.107753] SLOW spr round 12 (radius: 5) [12:26:37 -7836.106499] SLOW spr round 13 (radius: 10) [12:27:59 -7835.764680] SLOW spr round 14 (radius: 5) [12:29:21 -7835.763784] SLOW spr round 15 (radius: 10) [12:30:44 -7835.763204] SLOW spr round 16 (radius: 15) [12:32:18 -7714.372668] SLOW spr round 17 (radius: 5) [12:33:44 -7585.779262] SLOW spr round 18 (radius: 5) [12:35:04 -7569.257835] SLOW spr round 19 (radius: 5) [12:36:21 -7569.256483] SLOW spr round 20 (radius: 10) [12:37:41 -7569.256397] SLOW spr round 21 (radius: 15) [12:39:11 -7569.256363] SLOW spr round 22 (radius: 20) [12:40:54 -7568.988108] SLOW spr round 23 (radius: 5) [12:42:20 -7568.988107] SLOW spr round 24 (radius: 10) [12:43:44 -7568.988106] SLOW spr round 25 (radius: 15) [12:45:15 -7568.988106] SLOW spr round 26 (radius: 20) [12:46:56 -7568.988106] SLOW spr round 27 (radius: 25) [12:48:54 -7567.262836] SLOW spr round 28 (radius: 5) [12:50:20 -7567.262836] SLOW spr round 29 (radius: 10) [12:51:44 -7567.262836] SLOW spr round 30 (radius: 15) [12:53:14 -7567.262836] SLOW spr round 31 (radius: 20) [12:54:55 -7567.262836] SLOW spr round 32 (radius: 25) [12:56:53 -7567.262836] Model parameter optimization (eps = 0.100000) [12:57:03] ML tree search #13, logLikelihood: -7566.150929 [12:57:03 -89256.157585] Initial branch length optimization [12:57:04 -72660.309301] Model parameter optimization (eps = 10.000000) [12:57:31 -72339.426227] AUTODETECT spr round 1 (radius: 5) [12:58:57 -36210.675101] AUTODETECT spr round 2 (radius: 10) [13:00:28 -21020.326657] AUTODETECT spr round 3 (radius: 15) [13:01:57 -14815.185624] AUTODETECT spr round 4 (radius: 20) [13:03:31 -12153.360503] AUTODETECT spr round 5 (radius: 25) [13:05:17 -10332.960868] SPR radius for FAST iterations: 25 (autodetect) [13:05:17 -10332.960868] Model parameter optimization (eps = 3.000000) [13:05:36 -10287.612690] FAST spr round 1 (radius: 25) [13:07:01 -7965.331592] FAST spr round 2 (radius: 25) [13:08:21 -7646.712949] FAST spr round 3 (radius: 25) [13:09:38 -7624.437954] FAST spr round 4 (radius: 25) [13:10:53 -7617.413885] FAST spr round 5 (radius: 25) [13:12:07 -7617.309039] FAST spr round 6 (radius: 25) [13:13:20 -7617.308701] Model parameter optimization (eps = 1.000000) [13:13:35 -7613.703512] SLOW spr round 1 (radius: 5) [13:14:51 -7612.336344] SLOW spr round 2 (radius: 5) [13:16:05 -7612.287872] SLOW spr round 3 (radius: 10) [13:17:26 -7606.834359] SLOW spr round 4 (radius: 5) [13:18:46 -7606.046741] SLOW spr round 5 (radius: 5) [13:20:01 -7606.046640] SLOW spr round 6 (radius: 10) [13:21:19 -7606.046594] SLOW spr round 7 (radius: 15) [13:22:46 -7606.046564] SLOW spr round 8 (radius: 20) [13:24:25 -7598.093503] SLOW spr round 9 (radius: 5) [13:25:51 -7597.878780] SLOW spr round 10 (radius: 5) [13:27:10 -7595.877932] SLOW spr round 11 (radius: 5) [13:28:24 -7595.876961] SLOW spr round 12 (radius: 10) [13:29:43 -7595.876906] SLOW spr round 13 (radius: 15) [13:31:11 -7595.876902] SLOW spr round 14 (radius: 20) [13:32:51 -7595.876901] SLOW spr round 15 (radius: 25) [13:34:40 -7589.962318] SLOW spr round 16 (radius: 5) [13:36:07 -7586.026396] SLOW spr round 17 (radius: 5) [13:37:26 -7586.026238] SLOW spr round 18 (radius: 10) [13:38:44 -7584.055268] SLOW spr round 19 (radius: 5) [13:40:02 -7584.055268] SLOW spr round 20 (radius: 10) [13:41:21 -7584.055268] SLOW spr round 21 (radius: 15) [13:42:48 -7584.055266] SLOW spr round 22 (radius: 20) [13:44:29 -7584.055266] SLOW spr round 23 (radius: 25) [13:46:21 -7584.055266] Model parameter optimization (eps = 0.100000) [13:46:32] ML tree search #14, logLikelihood: -7583.546768 [13:46:32 -89881.689277] Initial branch length optimization [13:46:34 -74211.349825] Model parameter optimization (eps = 10.000000) [13:46:59 -73819.824110] AUTODETECT spr round 1 (radius: 5) [13:48:24 -37189.564432] AUTODETECT spr round 2 (radius: 10) [13:49:56 -20769.046085] AUTODETECT spr round 3 (radius: 15) [13:51:25 -14048.593338] AUTODETECT spr round 4 (radius: 20) [13:53:02 -11187.815059] AUTODETECT spr round 5 (radius: 25) [13:54:56 -9833.152790] SPR radius for FAST iterations: 25 (autodetect) [13:54:56 -9833.152790] Model parameter optimization (eps = 3.000000) [13:55:13 -9799.836377] FAST spr round 1 (radius: 25) [13:56:36 -7887.177564] FAST spr round 2 (radius: 25) [13:57:53 -7648.128646] FAST spr round 3 (radius: 25) [13:59:09 -7617.535777] FAST spr round 4 (radius: 25) [14:00:23 -7613.793129] FAST spr round 5 (radius: 25) [14:01:36 -7613.793058] Model parameter optimization (eps = 1.000000) [14:01:48 -7611.379126] SLOW spr round 1 (radius: 5) [14:03:04 -7611.174640] SLOW spr round 2 (radius: 5) [14:04:17 -7611.174154] SLOW spr round 3 (radius: 10) [14:05:36 -7607.911335] SLOW spr round 4 (radius: 5) [14:06:55 -7606.964915] SLOW spr round 5 (radius: 5) [14:08:09 -7606.964761] SLOW spr round 6 (radius: 10) [14:09:28 -7604.170975] SLOW spr round 7 (radius: 5) [14:10:47 -7604.170869] SLOW spr round 8 (radius: 10) [14:12:06 -7602.387225] SLOW spr round 9 (radius: 5) [14:13:26 -7600.011282] SLOW spr round 10 (radius: 5) [14:14:42 -7600.010642] SLOW spr round 11 (radius: 10) [14:16:00 -7600.010626] SLOW spr round 12 (radius: 15) [14:17:30 -7587.681799] SLOW spr round 13 (radius: 5) [14:18:53 -7587.571673] SLOW spr round 14 (radius: 5) [14:20:09 -7587.571555] SLOW spr round 15 (radius: 10) [14:21:27 -7587.571541] SLOW spr round 16 (radius: 15) [14:22:56 -7586.851777] SLOW spr round 17 (radius: 5) [14:24:20 -7586.851677] SLOW spr round 18 (radius: 10) [14:25:39 -7584.642819] SLOW spr round 19 (radius: 5) [14:27:00 -7584.328168] SLOW spr round 20 (radius: 5) [14:28:16 -7584.327576] SLOW spr round 21 (radius: 10) [14:29:33 -7584.327550] SLOW spr round 22 (radius: 15) [14:31:00 -7582.330897] SLOW spr round 23 (radius: 5) [14:32:22 -7582.330892] SLOW spr round 24 (radius: 10) [14:33:41 -7582.330890] SLOW spr round 25 (radius: 15) [14:35:08 -7582.330890] SLOW spr round 26 (radius: 20) [14:36:50 -7582.330890] SLOW spr round 27 (radius: 25) [14:38:53 -7579.740363] SLOW spr round 28 (radius: 5) [14:40:19 -7579.077748] SLOW spr round 29 (radius: 5) [14:41:37 -7579.077484] SLOW spr round 30 (radius: 10) [14:42:55 -7579.077460] SLOW spr round 31 (radius: 15) [14:44:23 -7579.077458] SLOW spr round 32 (radius: 20) [14:46:05 -7579.077458] SLOW spr round 33 (radius: 25) [14:48:10 -7579.077458] Model parameter optimization (eps = 0.100000) [14:48:17] ML tree search #15, logLikelihood: -7578.978902 [14:48:17 -89861.392871] Initial branch length optimization [14:48:19 -73441.113915] Model parameter optimization (eps = 10.000000) [14:48:36 -73148.949012] AUTODETECT spr round 1 (radius: 5) [14:50:03 -35010.255782] AUTODETECT spr round 2 (radius: 10) [14:51:41 -19539.357699] AUTODETECT spr round 3 (radius: 15) [14:53:10 -15902.072179] AUTODETECT spr round 4 (radius: 20) [14:54:51 -12746.078185] AUTODETECT spr round 5 (radius: 25) [14:56:46 -10501.501852] SPR radius for FAST iterations: 25 (autodetect) [14:56:46 -10501.501852] Model parameter optimization (eps = 3.000000) [14:57:13 -10416.023760] FAST spr round 1 (radius: 25) [14:58:38 -8095.936038] FAST spr round 2 (radius: 25) [14:59:59 -7884.488960] FAST spr round 3 (radius: 25) [15:01:20 -7829.655559] FAST spr round 4 (radius: 25) [15:02:37 -7811.552599] FAST spr round 5 (radius: 25) [15:03:52 -7810.238160] FAST spr round 6 (radius: 25) [15:05:06 -7810.237077] Model parameter optimization (eps = 1.000000) [15:05:14 -7809.000426] SLOW spr round 1 (radius: 5) [15:06:31 -7807.899210] SLOW spr round 2 (radius: 5) [15:07:47 -7807.313017] SLOW spr round 3 (radius: 5) [15:09:04 -7806.664108] SLOW spr round 4 (radius: 5) [15:10:21 -7806.663769] SLOW spr round 5 (radius: 10) [15:11:43 -7806.663444] SLOW spr round 6 (radius: 15) [15:13:13 -7806.408580] SLOW spr round 7 (radius: 5) [15:14:37 -7806.406427] SLOW spr round 8 (radius: 10) [15:15:58 -7806.406054] SLOW spr round 9 (radius: 15) [15:17:26 -7803.378178] SLOW spr round 10 (radius: 5) [15:18:50 -7798.914625] SLOW spr round 11 (radius: 5) [15:20:08 -7798.914566] SLOW spr round 12 (radius: 10) [15:21:28 -7798.914441] SLOW spr round 13 (radius: 15) [15:22:55 -7798.914387] SLOW spr round 14 (radius: 20) 330890] SLOW spr round 25 (radius: 15) [14:25:47 -7582.330890] SLOW spr round 26 (radius: 20) [14:27:30 -7582.330890] SLOW spr round 27 (radius: 25) [14:29:35 -7579.740363] SLOW spr round 28 (radius: 5) [14:31:01 -7579.077748] SLOW spr round 29 (radius: 5) [14:32:20 -7579.077484] SLOW spr round 30 (radius: 10) [14:33:38 -7579.077460] SLOW spr round 31 (radius: 15) [14:35:06 -7579.077458] SLOW spr round 32 (radius: 20) [14:36:50 -7579.077458] SLOW spr round 33 (radius: 25) [14:38:56 -7579.077458] Model parameter optimization (eps = 0.100000) [14:39:03] ML tree search #15, logLikelihood: -7578.978902 [14:39:03 -89861.392871] Initial branch length optimization [14:39:05 -73441.113915] Model parameter optimization (eps = 10.000000) [14:39:23 -73148.949012] AUTODETECT spr round 1 (radius: 5) [14:40:49 -35010.255782] AUTODETECT spr round 2 (radius: 10) [14:42:28 -19539.357699] AUTODETECT spr round 3 (radius: 15) [14:43:58 -15902.072179] AUTODETECT spr round 4 (radius: 20) [14:45:40 -12746.078185] AUTODETECT spr round 5 (radius: 25) [14:47:35 -10501.501852] SPR radius for FAST iterations: 25 (autodetect) [14:47:35 -10501.501852] Model parameter optimization (eps = 3.000000) [14:48:03 -10416.023760] FAST spr round 1 (radius: 25) [14:49:29 -8095.936038] FAST spr round 2 (radius: 25) [14:50:51 -7884.488960] FAST spr round 3 (radius: 25) [14:52:12 -7829.655559] FAST spr round 4 (radius: 25) [14:53:30 -7811.552599] FAST spr round 5 (radius: 25) [14:54:45 -7810.238160] FAST spr round 6 (radius: 25) [14:56:00 -7810.237077] Model parameter optimization (eps = 1.000000) [14:56:08 -7809.000426] SLOW spr round 1 (radius: 5) [14:57:26 -7807.899210] SLOW spr round 2 (radius: 5) [14:58:42 -7807.313017] SLOW spr round 3 (radius: 5) [15:00:00 -7806.664108] SLOW spr round 4 (radius: 5) [15:01:18 -7806.663769] SLOW spr round 5 (radius: 10) [15:02:41 -7806.663444] SLOW spr round 6 (radius: 15) [15:04:12 -7806.408580] SLOW spr round 7 (radius: 5) [15:05:37 -7806.406427] SLOW spr round 8 (radius: 10) [15:06:59 -7806.406054] SLOW spr round 9 (radius: 15) [15:08:27 -7803.378178] SLOW spr round 10 (radius: 5) [15:09:52 -7798.914625] SLOW spr round 11 (radius: 5) RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 14:47:55 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/2_msa/Q6NSW7_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential WARNING: The model you specified on the command line (LG4X) will be ignored since the binary MSA file already contains a model definition. If you want to change the model, please re-run RAxML-NG with the original PHYLIP/FASTA alignment and --redo option. [00:00:00] Loading binary alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7.raxml.rba [00:00:00] Alignment comprises 1000 taxa, 1 partitions and 63 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 63 / 63 Gaps: 0.51 % Invariant sites: 0.00 % Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] NOTE: Resuming execution from checkpoint (logLH: -7798.91, ML trees: 15, bootstraps: 0) [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 63 / 5040 [00:00:00] Data distribution: max. searches per worker: 5 Starting ML tree search with 20 distinct starting trees [00:00:00 -7798.914387] SPR radius for FAST iterations: 25 (autodetect) [00:00:00 -7798.914387] SLOW spr round 14 (radius: 20) [00:01:34 -7798.086188] SLOW spr round 15 (radius: 5) [00:02:56 -7798.086159] SLOW spr round 16 (radius: 10) RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 14:52:40 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/2_msa/Q6NSW7_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential WARNING: The model you specified on the command line (LG4X) will be ignored since the binary MSA file already contains a model definition. If you want to change the model, please re-run RAxML-NG with the original PHYLIP/FASTA alignment and --redo option. [00:00:00] Loading binary alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7.raxml.rba [00:00:00] Alignment comprises 1000 taxa, 1 partitions and 63 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 63 / 63 Gaps: 0.51 % Invariant sites: 0.00 % Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] NOTE: Resuming execution from checkpoint (logLH: -7798.09, ML trees: 15, bootstraps: 0) [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 63 / 5040 [00:00:00] Data distribution: max. searches per worker: 5 Starting ML tree search with 20 distinct starting trees [00:00:00 -7798.086159] SPR radius for FAST iterations: 25 (autodetect) [00:00:00 -7798.086159] SLOW spr round 16 (radius: 10) [00:01:20 -7798.086118] SLOW spr round 17 (radius: 15) [00:02:43 -7798.086102] SLOW spr round 18 (radius: 20) [00:04:15 -7797.450429] SLOW spr round 19 (radius: 5) [00:05:37 -7797.450358] SLOW spr round 20 (radius: 10) [00:06:55 -7797.450350] SLOW spr round 21 (radius: 15) [00:08:17 -7797.450350] SLOW spr round 22 (radius: 20) [00:09:50 -7797.450348] SLOW spr round 23 (radius: 25) [00:11:37 -7797.450348] Model parameter optimization (eps = 0.100000) [00:11:42] ML tree search #16, logLikelihood: -7797.375853 [00:11:42 -89312.063333] Initial branch length optimization [00:11:44 -72986.275686] Model parameter optimization (eps = 10.000000) [00:11:56 -72675.942862] AUTODETECT spr round 1 (radius: 5) [00:13:20 -35060.104618] AUTODETECT spr round 2 (radius: 10) [00:14:49 -21549.399860] AUTODETECT spr round 3 (radius: 15) [00:16:15 -16208.218321] AUTODETECT spr round 4 (radius: 20) [00:17:47 -13026.886001] AUTODETECT spr round 5 (radius: 25) [00:19:26 -11524.377015] SPR radius for FAST iterations: 25 (autodetect) [00:19:26 -11524.377015] Model parameter optimization (eps = 3.000000) [00:19:48 -11434.240654] FAST spr round 1 (radius: 25) [00:21:10 -8653.900008] FAST spr round 2 (radius: 25) RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 13:12:14 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/2_msa/Q6NSW7_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential WARNING: The model you specified on the command line (LG4X) will be ignored since the binary MSA file already contains a model definition. If you want to change the model, please re-run RAxML-NG with the original PHYLIP/FASTA alignment and --redo option. [00:00:00] Loading binary alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7.raxml.rba [00:00:00] Alignment comprises 1000 taxa, 1 partitions and 63 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 63 / 63 Gaps: 0.51 % Invariant sites: 0.00 % Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] NOTE: Resuming execution from checkpoint (logLH: -8653.90, ML trees: 16, bootstraps: 0) [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 63 / 5040 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -8653.900008] SPR radius for FAST iterations: 25 (autodetect) [00:00:00 -8653.900008] FAST spr round 2 (radius: 25) [00:01:19 -8174.245244] FAST spr round 3 (radius: 25) [00:02:39 -7995.637163] FAST spr round 4 (radius: 25) [00:03:56 -7937.805586] FAST spr round 5 (radius: 25) [00:05:11 -7922.732240] FAST spr round 6 (radius: 25) [00:06:26 -7919.988274] FAST spr round 7 (radius: 25) [00:07:40 -7919.362545] FAST spr round 8 (radius: 25) [00:08:53 -7919.362401] Model parameter optimization (eps = 1.000000) [00:09:05 -7917.676208] SLOW spr round 1 (radius: 5) [00:10:20 -7913.828657] SLOW spr round 2 (radius: 5) [00:11:35 -7908.629272] SLOW spr round 3 (radius: 5) [00:12:50 -7908.011404] SLOW spr round 4 (radius: 5) [00:14:05 -7906.881388] SLOW spr round 5 (radius: 5) [00:15:20 -7906.306899] SLOW spr round 6 (radius: 5) [00:16:35 -7906.306798] SLOW spr round 7 (radius: 10) [00:17:54 -7897.386011] SLOW spr round 8 (radius: 5) [00:19:14 -7889.532451] SLOW spr round 9 (radius: 5) [00:20:30 -7889.531839] SLOW spr round 10 (radius: 10) [00:21:54 -7888.114753] SLOW spr round 11 (radius: 5) [00:23:32 -7888.046594] SLOW spr round 12 (radius: 10) [00:25:07 -7880.596118] SLOW spr round 13 (radius: 5) [00:26:42 -7875.728002] SLOW spr round 14 (radius: 5) [00:28:14 -7875.727999] SLOW spr round 15 (radius: 10) [00:29:48 -7875.727964] SLOW spr round 16 (radius: 15) [00:31:56 -7781.456839] SLOW spr round 17 (radius: 5) [00:33:32 -7701.966873] SLOW spr round 18 (radius: 5) [00:35:00 -7700.420456] SLOW spr round 19 (radius: 5) [00:36:29 -7698.604264] SLOW spr round 20 (radius: 5) [00:37:54 -7698.603796] SLOW spr round 21 (radius: 10) [00:39:17 -7696.720161] SLOW spr round 22 (radius: 5) [00:40:38 -7696.720145] SLOW spr round 23 (radius: 10) [00:41:59 -7696.720122] SLOW spr round 24 (radius: 15) [00:43:32 -7616.067863] SLOW spr round 25 (radius: 5) [00:44:58 -7576.752061] SLOW spr round 26 (radius: 5) [00:46:17 -7569.795462] SLOW spr round 27 (radius: 5) [00:47:35 -7569.794334] SLOW spr round 28 (radius: 10) [00:49:01 -7568.529901] SLOW spr round 29 (radius: 5) [00:50:22 -7568.529073] SLOW spr round 30 (radius: 10) [00:51:44 -7568.528890] SLOW spr round 31 (radius: 15) [00:53:13 -7568.528874] SLOW spr round 32 (radius: 20) [00:55:00 -7558.502553] SLOW spr round 33 (radius: 5) [00:56:33 -7557.075870] SLOW spr round 34 (radius: 5) [00:57:59 -7556.254703] SLOW spr round 35 (radius: 5) [00:59:18 -7556.254311] SLOW spr round 36 (radius: 10) [01:00:42 -7556.254207] SLOW spr round 37 (radius: 15) [01:02:18 -7556.254185] SLOW spr round 38 (radius: 20) [01:04:05 -7556.254130] SLOW spr round 39 (radius: 25) [01:06:14 -7554.324480] SLOW spr round 40 (radius: 5) [01:07:49 -7554.324479] SLOW spr round 41 (radius: 10) [01:09:17 -7553.567706] SLOW spr round 42 (radius: 5) [01:10:44 -7553.567678] SLOW spr round 43 (radius: 10) [01:12:07 -7553.567674] SLOW spr round 44 (radius: 15) [01:13:35 -7553.567674] SLOW spr round 45 (radius: 20) [01:15:18 -7553.567674] SLOW spr round 46 (radius: 25) [01:17:20 -7553.567673] Model parameter optimization (eps = 0.100000) [01:17:30] ML tree search #17, logLikelihood: -7551.212821 [01:17:30 -89807.600162] Initial branch length optimization [01:17:32 -74225.430826] Model parameter optimization (eps = 10.000000) [01:17:52 -73909.546080] AUTODETECT spr round 1 (radius: 5) [01:19:19 -35400.725490] AUTODETECT spr round 2 (radius: 10) [01:20:54 -20470.867246] AUTODETECT spr round 3 (radius: 15) [01:22:28 -13541.478843] AUTODETECT spr round 4 (radius: 20) [01:24:06 -11600.132418] AUTODETECT spr round 5 (radius: 25) [01:25:48 -10991.357951] SPR radius for FAST iterations: 25 (autodetect) [01:25:48 -10991.357951] Model parameter optimization (eps = 3.000000) [01:25:56 -10966.919720] FAST spr round 1 (radius: 25) [01:27:20 -8862.786988] FAST spr round 2 (radius: 25) [01:28:36 -8388.222484] FAST spr round 3 (radius: 25) [01:29:50 -8136.475200] FAST spr round 4 (radius: 25) [01:31:07 -8080.551928] FAST spr round 5 (radius: 25) [01:32:19 -8068.302144] FAST spr round 6 (radius: 25) [01:33:30 -8067.033478] FAST spr round 7 (radius: 25) [01:34:40 -8067.033401] Model parameter optimization (eps = 1.000000) [01:34:48 -8062.841718] SLOW spr round 1 (radius: 5) [01:36:03 -8062.325465] SLOW spr round 2 (radius: 5) [01:37:17 -8059.777785] SLOW spr round 3 (radius: 5) [01:38:32 -8054.600912] SLOW spr round 4 (radius: 5) [01:39:46 -8054.276499] SLOW spr round 5 (radius: 5) [01:41:00 -8054.276397] SLOW spr round 6 (radius: 10) [01:42:20 -7930.619405] SLOW spr round 7 (radius: 5) [01:43:40 -7924.472497] SLOW spr round 8 (radius: 5) [01:44:55 -7924.289070] SLOW spr round 9 (radius: 5) [01:46:09 -7924.288992] SLOW spr round 10 (radius: 10) [01:47:28 -7924.288955] SLOW spr round 11 (radius: 15) [01:48:58 -7821.552908] SLOW spr round 12 (radius: 5) [01:50:20 -7818.894728] SLOW spr round 13 (radius: 5) [01:51:35 -7776.009953] SLOW spr round 14 (radius: 5) [01:52:49 -7692.922451] SLOW spr round 15 (radius: 5) [01:54:02 -7675.858706] SLOW spr round 16 (radius: 5) [01:55:14 -7675.858610] SLOW spr round 17 (radius: 10) [01:56:31 -7639.784722] SLOW spr round 18 (radius: 5) [01:57:49 -7618.888614] SLOW spr round 19 (radius: 5) [01:59:01 -7618.888596] SLOW spr round 20 (radius: 10) [02:00:19 -7614.319659] SLOW spr round 21 (radius: 5) [02:01:35 -7614.319646] SLOW spr round 22 (radius: 10) [02:02:52 -7614.319616] SLOW spr round 23 (radius: 15) [02:04:21 -7607.827825] SLOW spr round 24 (radius: 5) [02:05:43 -7591.281333] SLOW spr round 25 (radius: 5) [02:06:57 -7591.281284] SLOW spr round 26 (radius: 10) [02:08:15 -7591.256186] SLOW spr round 27 (radius: 15) [02:09:43 -7591.256095] SLOW spr round 28 (radius: 20) [02:11:24 -7591.256084] SLOW spr round 29 (radius: 25) [02:13:27 -7591.256068] Model parameter optimization (eps = 0.100000) [02:13:35] ML tree search #18, logLikelihood: -7589.204242 [02:13:35 -90023.276597] Initial branch length optimization [02:13:37 -74517.913839] Model parameter optimization (eps = 10.000000) [02:14:04 -74165.998803] AUTODETECT spr round 1 (radius: 5) [02:15:31 -35003.351798] AUTODETECT spr round 2 (radius: 10) [02:16:59 -20758.027885] AUTODETECT spr round 3 (radius: 15) [02:18:24 -16367.371694] AUTODETECT spr round 4 (radius: 20) [02:20:08 -12357.069343] AUTODETECT spr round 5 (radius: 25) [02:21:54 -9940.266991] SPR radius for FAST iterations: 25 (autodetect) [02:21:54 -9940.266991] Model parameter optimization (eps = 3.000000) [02:22:18 -9900.694283] FAST spr round 1 (radius: 25) [02:23:43 -8167.173648] FAST spr round 2 (radius: 25) [02:25:01 -7897.985216] FAST spr round 3 (radius: 25) [02:26:19 -7895.380769] FAST spr round 4 (radius: 25) [02:27:33 -7895.256817] FAST spr round 5 (radius: 25) [02:28:47 -7895.256775] Model parameter optimization (eps = 1.000000) [02:28:56 -7892.393221] SLOW spr round 1 (radius: 5) [02:30:12 -7892.111219] SLOW spr round 2 (radius: 5) [02:31:27 -7863.215569] SLOW spr round 3 (radius: 5) [02:32:41 -7862.517321] SLOW spr round 4 (radius: 5) [02:33:54 -7862.517274] SLOW spr round 5 (radius: 10) [02:35:14 -7858.960281] SLOW spr round 6 (radius: 5) [02:36:33 -7856.318237] SLOW spr round 7 (radius: 5) [02:37:49 -7856.004740] SLOW spr round 8 (radius: 5) [02:39:02 -7855.999458] SLOW spr round 9 (radius: 10) [02:40:21 -7855.999426] SLOW spr round 10 (radius: 15) [02:41:55 -7794.569116] SLOW spr round 11 (radius: 5) [02:43:25 -7636.805557] SLOW spr round 12 (radius: 5) [02:44:47 -7602.058660] SLOW spr round 13 (radius: 5) [02:46:03 -7601.000839] SLOW spr round 14 (radius: 5) [02:47:18 -7601.000827] SLOW spr round 15 (radius: 10) [02:48:38 -7601.000824] SLOW spr round 16 (radius: 15) [02:50:10 -7601.000820] SLOW spr round 17 (radius: 20) [02:51:59 -7596.798170] SLOW spr round 18 (radius: 5) [02:53:23 -7596.798121] SLOW spr round 19 (radius: 10) [02:54:46 -7595.896658] SLOW spr round 20 (radius: 5) [02:56:04 -7595.896600] SLOW spr round 21 (radius: 10) [02:57:22 -7595.896599] SLOW spr round 22 (radius: 15) [02:58:51 -7595.712858] SLOW spr round 23 (radius: 5) [03:00:13 -7595.712822] SLOW spr round 24 (radius: 10) [03:01:33 -7595.712820] SLOW spr round 25 (radius: 15) [03:03:01 -7595.712820] SLOW spr round 26 (radius: 20) [03:04:46 -7595.712820] SLOW spr round 27 (radius: 25) [03:06:49 -7592.553469] SLOW spr round 28 (radius: 5) [03:08:12 -7592.553287] SLOW spr round 29 (radius: 10) [03:09:34 -7592.553286] SLOW spr round 30 (radius: 15) [03:11:01 -7592.553286] SLOW spr round 31 (radius: 20) [03:12:42 -7592.553286] SLOW spr round 32 (radius: 25) [03:14:40 -7592.553286] Model parameter optimization (eps = 0.100000) [03:14:50] ML tree search #19, logLikelihood: -7592.307291 [03:14:50 -89080.356654] Initial branch length optimization [03:14:51 -72946.139657] Model parameter optimization (eps = 10.000000) [03:15:05 -72634.667545] AUTODETECT spr round 1 (radius: 5) [03:16:28 -35222.038983] AUTODETECT spr round 2 (radius: 10) [03:17:56 -20712.956529] AUTODETECT spr round 3 (radius: 15) [03:19:24 -14959.700446] AUTODETECT spr round 4 (radius: 20) [03:21:01 -12502.814140] AUTODETECT spr round 5 (radius: 25) [03:22:45 -11845.452731] SPR radius for FAST iterations: 25 (autodetect) [03:22:45 -11845.452731] Model parameter optimization (eps = 3.000000) [03:23:06 -11728.577782] FAST spr round 1 (radius: 25) [03:24:28 -8797.330133] FAST spr round 2 (radius: 25) [03:25:44 -8022.680476] FAST spr round 3 (radius: 25) [03:27:00 -7752.621731] FAST spr round 4 (radius: 25) [03:28:16 -7662.211996] FAST spr round 5 (radius: 25) [03:29:29 -7660.741097] FAST spr round 6 (radius: 25) [03:30:41 -7660.740467] Model parameter optimization (eps = 1.000000) [03:30:54 -7651.050935] SLOW spr round 1 (radius: 5) [03:32:09 -7644.771763] SLOW spr round 2 (radius: 5) [03:33:24 -7643.996484] SLOW spr round 3 (radius: 5) [03:34:37 -7643.996404] SLOW spr round 4 (radius: 10) [03:35:56 -7634.865433] SLOW spr round 5 (radius: 5) [03:37:14 -7603.911615] SLOW spr round 6 (radius: 5) [03:38:28 -7603.911011] SLOW spr round 7 (radius: 10) [03:39:46 -7603.910871] SLOW spr round 8 (radius: 15) [03:41:12 -7560.201086] SLOW spr round 9 (radius: 5) [03:42:36 -7555.289117] SLOW spr round 10 (radius: 5) [03:43:51 -7555.289117] SLOW spr round 11 (radius: 10) [03:45:09 -7553.856525] SLOW spr round 12 (radius: 5) [03:46:26 -7553.856525] SLOW spr round 13 (radius: 10) [03:47:43 -7553.725373] SLOW spr round 14 (radius: 5) [03:48:59 -7553.725373] SLOW spr round 15 (radius: 10) [03:50:17 -7553.725373] SLOW spr round 16 (radius: 15) [03:51:42 -7553.725373] SLOW spr round 17 (radius: 20) [03:53:23 -7550.895571] SLOW spr round 18 (radius: 5) [03:54:48 -7550.488488] SLOW spr round 19 (radius: 5) [03:56:04 -7550.488241] SLOW spr round 20 (radius: 10) [03:57:21 -7547.622529] SLOW spr round 21 (radius: 5) [03:58:37 -7547.620665] SLOW spr round 22 (radius: 10) [03:59:54 -7547.620659] SLOW spr round 23 (radius: 15) [04:01:19 -7547.620659] SLOW spr round 24 (radius: 20) [04:03:00 -7547.620659] SLOW spr round 25 (radius: 25) [04:05:04 -7544.406269] SLOW spr round 26 (radius: 5) [04:06:26 -7544.405655] SLOW spr round 27 (radius: 10) [04:07:46 -7543.306786] SLOW spr round 28 (radius: 5) [04:09:01 -7543.306416] SLOW spr round 29 (radius: 10) [04:10:17 -7543.306416] SLOW spr round 30 (radius: 15) [04:11:41 -7543.306416] SLOW spr round 31 (radius: 20) [04:13:23 -7543.306416] SLOW spr round 32 (radius: 25) [04:15:32 -7543.306416] Model parameter optimization (eps = 0.100000) [04:15:38] ML tree search #20, logLikelihood: -7542.979481 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.349346,0.423985) (0.254995,0.738831) (0.238235,2.256303) (0.157423,0.800093) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -7542.979481 AIC score: 19091.958962 / AICc score: 8047115.958962 / BIC score: 23384.657819 Free parameters (model + branch lengths): 2003 WARNING: Number of free parameters (K=2003) is larger than alignment size (n=63). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 753 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7.raxml.bestTreeCollapsed Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q6NSW7/3_mltree/Q6NSW7.raxml.log Analysis started: 04-Jun-2021 13:12:14 / finished: 04-Jun-2021 17:27:53 Elapsed time: 15338.994 seconds (this run) / 72162.559 seconds (total with restarts)