RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 05-Jul-2021 10:05:32 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6IPT4/2_msa/Q6IPT4_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6IPT4/3_mltree/Q6IPT4 --seed 2 --threads 5 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6IPT4/2_msa/Q6IPT4_trimmed_msa.fasta [00:00:00] Loaded alignment with 891 taxa and 266 sites WARNING: Sequences sp_Q1DWN4_NCB5R_COCIM_246410 and tr_E9D884_E9D884_COCPS_443226 are exactly identical! WARNING: Sequences tr_B6Q8G6_B6Q8G6_TALMQ_441960 and tr_A0A093UUU4_A0A093UUU4_TALMA_1077442 are exactly identical! WARNING: Sequences tr_B2W9Y9_B2W9Y9_PYRTR_426418 and tr_A0A2W1FXE1_A0A2W1FXE1_9PLEO_45151 are exactly identical! WARNING: Sequences tr_A0A179UPD0_A0A179UPD0_BLAGS_559298 and tr_C5GE10_C5GE10_AJEDR_559297 are exactly identical! WARNING: Sequences tr_H2PZ31_H2PZ31_PANTR_9598 and tr_A0A2R8ZW54_A0A2R8ZW54_PANPA_9597 are exactly identical! WARNING: Sequences tr_F9F614_F9F614_FUSOF_660025 and tr_N4U624_N4U624_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9F614_F9F614_FUSOF_660025 and tr_A0A2H3SWY8_A0A2H3SWY8_FUSOX_5507 are exactly identical! WARNING: Sequences tr_E9F0L4_E9F0L4_METRA_655844 and tr_A0A0B4IJT2_A0A0B4IJT2_METMF_1276143 are exactly identical! WARNING: Sequences tr_Q2UMT6_Q2UMT6_ASPOR_510516 and tr_A0A1S9D6D8_A0A1S9D6D8_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A0E0FUV5_A0A0E0FUV5_ORYNI_4536 and tr_A2WWB5_A2WWB5_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0FUV5_A0A0E0FUV5_ORYNI_4536 and tr_I1NSN6_I1NSN6_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0FUV5_A0A0E0FUV5_ORYNI_4536 and tr_A0A0E0C9G3_A0A0E0C9G3_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0FUV5_A0A0E0FUV5_ORYNI_4536 and tr_A0A0D3EVF0_A0A0D3EVF0_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0FUV5_A0A0E0FUV5_ORYNI_4536 and tr_A0A0D9YGF3_A0A0D9YGF3_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0FUV5_A0A0E0FUV5_ORYNI_4536 and tr_Q5N760_Q5N760_ORYSJ_39947 are exactly identical! WARNING: Sequences sp_A2QCV4_NCB5R_ASPNC_425011 and tr_A0A319B8G2_A0A319B8G2_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F7DD80_F7DD80_MACMU_9544 and tr_A0A096NA40_A0A096NA40_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7DD80_F7DD80_MACMU_9544 and tr_A0A2K6DFS7_A0A2K6DFS7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7DD80_F7DD80_MACMU_9544 and tr_A0A2K5ZRY5_A0A2K5ZRY5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7X562_G7X562_ASPKW_1033177 and tr_A0A117DV95_A0A117DV95_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7X562_G7X562_ASPKW_1033177 and tr_A0A146FMV0_A0A146FMV0_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7X562_G7X562_ASPKW_1033177 and tr_A0A1L9NAQ0_A0A1L9NAQ0_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A0A0E0PP91_A0A0E0PP91_ORYRU_4529 and tr_Q6AVN1_Q6AVN1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_G2YUV4_G2YUV4_BOTF4_999810 and tr_M7TTR7_M7TTR7_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_F2SL72_F2SL72_TRIRC_559305 and tr_A0A059J8L7_A0A059J8L7_9EURO_1215338 are exactly identical! WARNING: Sequences tr_S2JX37_S2JX37_MUCC1_1220926 and tr_A0A168JYY3_A0A168JYY3_MUCCL_747725 are exactly identical! WARNING: Sequences tr_V2XGQ0_V2XGQ0_MONRO_1381753 and tr_A0A0W0F8N7_A0A0W0F8N7_9AGAR_221103 are exactly identical! WARNING: Sequences tr_V2XIP2_V2XIP2_MONRO_1381753 and tr_A0A0W0F1N9_A0A0W0F1N9_9AGAR_221103 are exactly identical! WARNING: Sequences tr_A0A3B6ELC4_A0A3B6ELC4_WHEAT_4565 and tr_A0A3B6H0I7_A0A3B6H0I7_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A015L8J5_A0A015L8J5_9GLOM_1432141 and tr_A0A2H5U7U0_A0A2H5U7U0_RHIID_747089 are exactly identical! WARNING: Sequences tr_V4TCH9_V4TCH9_9ROSI_85681 and tr_A0A2H5NNF4_A0A2H5NNF4_CITUN_55188 are exactly identical! WARNING: Sequences tr_V4VDL5_V4VDL5_9ROSI_85681 and tr_A0A2H5PEE6_A0A2H5PEE6_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0F8UNY4_A0A0F8UNY4_9EURO_308745 and tr_A0A2T5LTP2_A0A2T5LTP2_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A100IGB9_A0A100IGB9_ASPNG_5061 and tr_A0A1L9MQW5_A0A1L9MQW5_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A0A1S3WXG3_A0A1S3WXG3_TOBAC_4097 and tr_A0A1U7W268_A0A1U7W268_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3XIH4_A0A1S3XIH4_TOBAC_4097 and tr_A0A1U7Y3N0_A0A1U7Y3N0_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1L9WK94_A0A1L9WK94_ASPAC_690307 and tr_A0A2V5IBV2_A0A2V5IBV2_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A2D0RKP0_A0A2D0RKP0_ICTPU_7998 and tr_A0A2D0RL86_A0A2D0RL86_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1U8F6Y1_A0A1U8F6Y1_CAPAN_4072 and tr_A0A2G3BGV2_A0A2G3BGV2_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2U4BJF6_A0A2U4BJF6_TURTR_9739 and tr_A0A2Y9N9I6_A0A2Y9N9I6_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 40 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6IPT4/3_mltree/Q6IPT4.raxml.reduced.phy Alignment comprises 1 partitions and 266 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 266 / 266 Gaps: 7.08 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6IPT4/3_mltree/Q6IPT4.raxml.rba Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 891 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 266 / 21280 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -409450.416474] Initial branch length optimization [00:00:07 -349615.430855] Model parameter optimization (eps = 10.000000) [00:01:13 -347250.372044] AUTODETECT spr round 1 (radius: 5) [00:04:29 -274147.271062] AUTODETECT spr round 2 (radius: 10) [00:08:18 -216963.460145] AUTODETECT spr round 3 (radius: 15) [00:12:26 -184240.142437] AUTODETECT spr round 4 (radius: 20) [00:17:47 -172447.613566] AUTODETECT spr round 5 (radius: 25) [00:25:07 -171922.600709] SPR radius for FAST iterations: 25 (autodetect) [00:25:07 -171922.600709] Model parameter optimization (eps = 3.000000) [00:25:48 -171667.136277] FAST spr round 1 (radius: 25) [00:31:07 -155122.032049] FAST spr round 2 (radius: 25) [00:34:43 -154024.704187] FAST spr round 3 (radius: 25) [00:37:30 -153971.016951] FAST spr round 4 (radius: 25) [00:39:56 -153963.640557] FAST spr round 5 (radius: 25) [00:42:13 -153963.640132] Model parameter optimization (eps = 1.000000) [00:42:37 -153954.059744] SLOW spr round 1 (radius: 5) [00:46:12 -153915.715171] SLOW spr round 2 (radius: 5) [00:49:21 -153915.712589] SLOW spr round 3 (radius: 10) [00:52:38 -153914.049676] SLOW spr round 4 (radius: 5) [00:56:38 -153911.773656] SLOW spr round 5 (radius: 5) [01:00:04 -153911.773565] SLOW spr round 6 (radius: 10) [01:03:24 -153911.773552] SLOW spr round 7 (radius: 15) [01:10:04 -153911.773543] SLOW spr round 8 (radius: 20) [01:21:09 -153911.773535] SLOW spr round 9 (radius: 25) [01:34:52 -153911.590428] SLOW spr round 10 (radius: 5) [01:35:14] [worker #3] ML tree search #4, logLikelihood: -153869.119485 [01:39:06 -153911.279436] SLOW spr round 11 (radius: 5) [01:39:53] [worker #2] ML tree search #3, logLikelihood: -153862.565451 [01:40:28] [worker #1] ML tree search #2, logLikelihood: -153875.632972 [01:42:44 -153911.278699] SLOW spr round 12 (radius: 10) [01:46:11 -153911.278587] SLOW spr round 13 (radius: 15) [01:46:26] [worker #4] ML tree search #5, logLikelihood: -153849.980851 [01:52:35 -153911.278547] SLOW spr round 14 (radius: 20) [02:03:44 -153911.278530] SLOW spr round 15 (radius: 25) [02:17:28 -153911.278524] Model parameter optimization (eps = 0.100000) [02:17:36] [worker #0] ML tree search #1, logLikelihood: -153911.255529 [02:17:36 -408626.772969] Initial branch length optimization [02:17:42 -348562.603811] Model parameter optimization (eps = 10.000000) [02:19:01 -346207.612644] AUTODETECT spr round 1 (radius: 5) [02:22:19 -271622.488774] AUTODETECT spr round 2 (radius: 10) [02:26:17 -203390.361407] AUTODETECT spr round 3 (radius: 15) [02:30:22 -177552.438537] AUTODETECT spr round 4 (radius: 20) [02:35:20 -171811.989627] AUTODETECT spr round 5 (radius: 25) [02:42:17 -171070.399787] SPR radius for FAST iterations: 25 (autodetect) [02:42:17 -171070.399787] Model parameter optimization (eps = 3.000000) [02:42:57 -170835.274926] FAST spr round 1 (radius: 25) [02:48:14 -154503.676045] FAST spr round 2 (radius: 25) [02:51:45 -154026.203888] FAST spr round 3 (radius: 25) [02:54:40 -153940.345159] FAST spr round 4 (radius: 25) [02:57:09 -153928.940229] FAST spr round 5 (radius: 25) [02:59:27 -153928.039026] FAST spr round 6 (radius: 25) [03:01:35 -153928.038030] Model parameter optimization (eps = 1.000000) [03:01:52 -153923.395436] SLOW spr round 1 (radius: 5) [03:05:14 -153874.435759] SLOW spr round 2 (radius: 5) [03:08:21 -153869.891450] SLOW spr round 3 (radius: 5) [03:11:24 -153869.890927] SLOW spr round 4 (radius: 10) [03:14:35 -153866.893635] SLOW spr round 5 (radius: 5) [03:18:34 -153849.349033] SLOW spr round 6 (radius: 5) [03:22:04 -153846.617114] SLOW spr round 7 (radius: 5) [03:25:17 -153846.616880] SLOW spr round 8 (radius: 10) [03:25:34] [worker #3] ML tree search #9, logLikelihood: -153872.180022 [03:28:27 -153846.616849] SLOW spr round 9 (radius: 15) [03:28:29] [worker #1] ML tree search #7, logLikelihood: -153906.769735 [03:34:21 -153846.616829] SLOW spr round 10 (radius: 20) [03:43:20] [worker #4] ML tree search #10, logLikelihood: -153857.642837 [03:43:30 -153846.616815] SLOW spr round 11 (radius: 25) [03:48:10] [worker #2] ML tree search #8, logLikelihood: -153864.317510 [03:55:12 -153846.616805] Model parameter optimization (eps = 0.100000) [03:55:21] [worker #0] ML tree search #6, logLikelihood: -153846.445774 [03:55:21 -410879.468531] Initial branch length optimization [03:55:27 -350787.688336] Model parameter optimization (eps = 10.000000) [03:56:20 -348447.304725] AUTODETECT spr round 1 (radius: 5) [03:59:35 -273981.095478] AUTODETECT spr round 2 (radius: 10) [04:03:25 -216074.793736] AUTODETECT spr round 3 (radius: 15) [04:07:30 -185421.386216] AUTODETECT spr round 4 (radius: 20) [04:12:42 -175133.238816] AUTODETECT spr round 5 (radius: 25) [04:18:50 -172904.800255] SPR radius for FAST iterations: 25 (autodetect) [04:18:50 -172904.800255] Model parameter optimization (eps = 3.000000) [04:19:33 -172640.147798] FAST spr round 1 (radius: 25) [04:24:47 -154682.697727] FAST spr round 2 (radius: 25) [04:28:15 -154047.968104] FAST spr round 3 (radius: 25) [04:31:00 -154006.696584] FAST spr round 4 (radius: 25) [04:33:29 -153991.512425] FAST spr round 5 (radius: 25) [04:35:47 -153988.641954] FAST spr round 6 (radius: 25) [04:37:54 -153988.641733] Model parameter optimization (eps = 1.000000) [04:38:08 -153987.362136] SLOW spr round 1 (radius: 5) [04:41:33 -153919.897174] SLOW spr round 2 (radius: 5) [04:44:48 -153905.278897] SLOW spr round 3 (radius: 5) [04:47:54 -153899.824622] SLOW spr round 4 (radius: 5) [04:50:58 -153898.303269] SLOW spr round 5 (radius: 5) [04:53:53 -153898.302341] SLOW spr round 6 (radius: 10) [04:57:13 -153892.354410] SLOW spr round 7 (radius: 5) [05:01:12 -153888.243053] SLOW spr round 8 (radius: 5) [05:02:28] [worker #3] ML tree search #14, logLikelihood: -153859.762518 [05:04:34 -153887.750761] SLOW spr round 9 (radius: 5) [05:07:46 -153887.750749] SLOW spr round 10 (radius: 10) [05:08:14] [worker #1] ML tree search #12, logLikelihood: -153896.624506 [05:11:07 -153887.750747] SLOW spr round 11 (radius: 15) [05:17:11 -153887.750747] SLOW spr round 12 (radius: 20) [05:26:41 -153887.750746] SLOW spr round 13 (radius: 25) [05:38:34 -153887.750746] Model parameter optimization (eps = 0.100000) [05:38:42] [worker #0] ML tree search #11, logLikelihood: -153887.717337 [05:38:42 -411445.214175] Initial branch length optimization [05:38:46 -350532.970437] Model parameter optimization (eps = 10.000000) [05:40:01 -348101.856810] AUTODETECT spr round 1 (radius: 5) [05:43:20 -277292.921183] AUTODETECT spr round 2 (radius: 10) [05:47:09 -217549.200136] AUTODETECT spr round 3 (radius: 15) [05:51:17 -182887.122860] AUTODETECT spr round 4 (radius: 20) [05:56:21 -174545.359907] AUTODETECT spr round 5 (radius: 25) [06:02:49] [worker #4] ML tree search #15, logLikelihood: -153874.695621 [06:03:55 -173645.774089] SPR radius for FAST iterations: 25 (autodetect) [06:03:55 -173645.774089] Model parameter optimization (eps = 3.000000) [06:04:33 -173403.009795] FAST spr round 1 (radius: 25) [06:10:03 -154851.606220] FAST spr round 2 (radius: 25) [06:10:07] [worker #2] ML tree search #13, logLikelihood: -153864.227723 [06:13:39 -153978.959361] FAST spr round 3 (radius: 25) [06:16:33 -153933.164748] FAST spr round 4 (radius: 25) [06:19:01 -153924.435578] FAST spr round 5 (radius: 25) [06:21:13 -153922.208958] FAST spr round 6 (radius: 25) [06:23:27 -153922.208955] Model parameter optimization (eps = 1.000000) [06:23:46 -153919.685390] SLOW spr round 1 (radius: 5) [06:27:10 -153875.808248] SLOW spr round 2 (radius: 5) [06:30:25 -153862.502628] SLOW spr round 3 (radius: 5) [06:33:37 -153857.797394] SLOW spr round 4 (radius: 5) [06:36:37 -153854.677146] SLOW spr round 5 (radius: 5) [06:38:55] [worker #3] ML tree search #19, logLikelihood: -153892.537938 [06:39:40 -153854.271478] SLOW spr round 6 (radius: 5) [06:42:40 -153854.271472] SLOW spr round 7 (radius: 10) [06:45:43 -153853.622766] SLOW spr round 8 (radius: 5) [06:49:39 -153852.430799] SLOW spr round 9 (radius: 5) [06:53:00 -153852.101682] SLOW spr round 10 (radius: 5) [06:56:11 -153852.101579] SLOW spr round 11 (radius: 10) [06:57:42] [worker #1] ML tree search #17, logLikelihood: -153878.478244 [06:59:16 -153852.101577] SLOW spr round 12 (radius: 15) [07:05:27 -153852.101577] SLOW spr round 13 (radius: 20) [07:14:41 -153852.101577] SLOW spr round 14 (radius: 25) [07:26:27 -153852.101577] Model parameter optimization (eps = 0.100000) [07:26:34] [worker #0] ML tree search #16, logLikelihood: -153852.091191 [07:40:38] [worker #4] ML tree search #20, logLikelihood: -153863.661059 [07:49:33] [worker #2] ML tree search #18, logLikelihood: -153881.955909 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.172769,0.373538) (0.210423,0.432340) (0.333146,0.969472) (0.283663,1.838501) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -153846.445774 AIC score: 311262.891547 / AICc score: 6687282.891547 / BIC score: 317659.432458 Free parameters (model + branch lengths): 1785 WARNING: Number of free parameters (K=1785) is larger than alignment size (n=266). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 38 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6IPT4/3_mltree/Q6IPT4.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6IPT4/3_mltree/Q6IPT4.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6IPT4/3_mltree/Q6IPT4.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6IPT4/3_mltree/Q6IPT4.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q6IPT4/3_mltree/Q6IPT4.raxml.log Analysis started: 05-Jul-2021 10:05:32 / finished: 05-Jul-2021 17:55:05 Elapsed time: 28173.398 seconds Consumed energy: 2565.138 Wh (= 13 km in an electric car, or 64 km with an e-scooter!)